Multiple sequence alignment - TraesCS2D01G382000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G382000 chr2D 100.000 4487 0 0 1 4487 485998336 486002822 0.000000e+00 8287.0
1 TraesCS2D01G382000 chr2D 91.228 57 2 2 3873 3926 474500878 474500934 1.730000e-09 75.0
2 TraesCS2D01G382000 chr2B 94.486 2938 111 14 949 3863 571042578 571045487 0.000000e+00 4481.0
3 TraesCS2D01G382000 chr2B 90.343 321 16 5 4176 4487 571045958 571046272 1.500000e-109 407.0
4 TraesCS2D01G382000 chr2B 96.861 223 4 1 3925 4147 571045518 571045737 1.970000e-98 370.0
5 TraesCS2D01G382000 chr2B 89.524 210 8 9 719 917 571042023 571042229 2.070000e-63 254.0
6 TraesCS2D01G382000 chr2A 94.155 2960 105 30 719 3640 631638689 631641618 0.000000e+00 4446.0
7 TraesCS2D01G382000 chr2A 90.543 571 16 4 3925 4486 631641902 631642443 0.000000e+00 721.0
8 TraesCS2D01G382000 chr2A 93.548 248 9 2 3616 3863 631641630 631641870 3.300000e-96 363.0
9 TraesCS2D01G382000 chr2A 82.540 315 24 16 1 301 138508400 138508697 9.640000e-62 248.0
10 TraesCS2D01G382000 chr2A 83.750 240 30 8 389 625 631637982 631638215 7.560000e-53 219.0
11 TraesCS2D01G382000 chr3B 85.911 291 27 9 1 281 764073255 764072969 9.440000e-77 298.0
12 TraesCS2D01G382000 chr6B 84.429 289 29 9 3 280 701458167 701458450 2.060000e-68 270.0
13 TraesCS2D01G382000 chr6B 83.391 289 34 12 2 281 64518664 64518947 5.760000e-64 255.0
14 TraesCS2D01G382000 chr6B 94.872 39 1 1 588 626 5729731 5729694 4.850000e-05 60.2
15 TraesCS2D01G382000 chrUn 82.468 308 36 12 1 300 344662162 344661865 2.070000e-63 254.0
16 TraesCS2D01G382000 chr6D 82.927 287 35 10 3 281 460487684 460487964 3.470000e-61 246.0
17 TraesCS2D01G382000 chr6D 94.231 52 2 1 3876 3926 288470167 288470116 1.340000e-10 78.7
18 TraesCS2D01G382000 chr6D 86.765 68 4 4 3872 3936 242634230 242634295 2.240000e-08 71.3
19 TraesCS2D01G382000 chr6D 89.796 49 1 4 580 626 42415975 42416021 4.850000e-05 60.2
20 TraesCS2D01G382000 chr7A 81.849 292 40 8 17 300 49772677 49772963 2.700000e-57 233.0
21 TraesCS2D01G382000 chr7A 80.399 301 44 10 10 300 49759800 49760095 9.780000e-52 215.0
22 TraesCS2D01G382000 chr7B 82.463 268 35 7 39 300 57699364 57699103 1.620000e-54 224.0
23 TraesCS2D01G382000 chr4A 75.377 398 42 28 1 394 97814686 97814341 1.680000e-29 141.0
24 TraesCS2D01G382000 chr4A 84.211 76 6 5 3862 3932 546208007 546207933 8.050000e-08 69.4
25 TraesCS2D01G382000 chr4A 86.567 67 2 4 3864 3926 134538348 134538285 2.900000e-07 67.6
26 TraesCS2D01G382000 chr3A 86.458 96 11 2 293 387 465918263 465918357 2.210000e-18 104.0
27 TraesCS2D01G382000 chr3A 94.231 52 2 1 3876 3926 584446774 584446825 1.340000e-10 78.7
28 TraesCS2D01G382000 chr3A 97.143 35 0 1 592 626 536902524 536902491 1.740000e-04 58.4
29 TraesCS2D01G382000 chr6A 93.103 58 3 1 3870 3926 157137485 157137428 2.880000e-12 84.2
30 TraesCS2D01G382000 chr4D 90.323 62 3 3 3869 3928 39405633 39405573 1.340000e-10 78.7
31 TraesCS2D01G382000 chr5D 86.154 65 6 2 3863 3927 547276067 547276006 2.900000e-07 67.6
32 TraesCS2D01G382000 chr5D 88.235 51 4 2 577 626 255701630 255701581 4.850000e-05 60.2
33 TraesCS2D01G382000 chr5A 94.872 39 0 2 589 626 691666558 691666595 4.850000e-05 60.2
34 TraesCS2D01G382000 chr5B 94.737 38 1 1 589 626 696292032 696291996 1.740000e-04 58.4
35 TraesCS2D01G382000 chr1D 94.737 38 1 1 589 626 207012901 207012937 1.740000e-04 58.4
36 TraesCS2D01G382000 chr1B 86.538 52 5 2 576 626 112758459 112758409 6.270000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G382000 chr2D 485998336 486002822 4486 False 8287.00 8287 100.0000 1 4487 1 chr2D.!!$F2 4486
1 TraesCS2D01G382000 chr2B 571042023 571046272 4249 False 1378.00 4481 92.8035 719 4487 4 chr2B.!!$F1 3768
2 TraesCS2D01G382000 chr2A 631637982 631642443 4461 False 1437.25 4446 90.4990 389 4486 4 chr2A.!!$F2 4097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.037046 GCAGGAAACCAATGGGCTTG 60.037 55.0 3.55 0.55 37.90 4.01 F
192 193 0.037046 CAGGAAACCAATGGGCTTGC 60.037 55.0 3.55 1.85 37.90 4.01 F
193 194 0.178924 AGGAAACCAATGGGCTTGCT 60.179 50.0 3.55 4.38 36.26 3.91 F
1125 1861 0.249073 CGACCGGACCATGTGAGATC 60.249 60.0 9.46 0.00 0.00 2.75 F
1490 2238 0.599991 AGTGTGCGCGACAGAAATGA 60.600 50.0 12.10 0.00 34.28 2.57 F
2710 3458 0.250901 GCACAGGAAGAAAGCCCTCA 60.251 55.0 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1834 0.105039 GGATCTCACATGGTCCGGTC 59.895 60.000 0.0 0.0 0.00 4.79 R
1864 2612 0.108615 TCTCCAGCAGTAAAGAGCGC 60.109 55.000 0.0 0.0 35.48 5.92 R
1929 2677 0.744414 CAGGCGACGAATGGATGGTT 60.744 55.000 0.0 0.0 0.00 3.67 R
2351 3099 0.963225 GCTCCGAGGGTATCTCTTCC 59.037 60.000 0.0 0.0 40.30 3.46 R
3327 4075 1.610522 CCCTTCTGTCCTGCAACAAAG 59.389 52.381 0.0 0.0 0.00 2.77 R
3911 4722 0.386113 GCATCTACTCACTCCGTCCC 59.614 60.000 0.0 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 1.979855 AAAAACAAAATGGGCTGGCC 58.020 45.000 14.23 14.23 0.00 5.36
110 111 4.819082 CCAATCTTTGGCGCCATG 57.181 55.556 33.25 24.62 45.17 3.66
111 112 1.892338 CCAATCTTTGGCGCCATGT 59.108 52.632 33.25 13.85 45.17 3.21
112 113 0.458889 CCAATCTTTGGCGCCATGTG 60.459 55.000 33.25 22.39 45.17 3.21
113 114 0.244450 CAATCTTTGGCGCCATGTGT 59.756 50.000 33.25 14.64 0.00 3.72
114 115 0.244450 AATCTTTGGCGCCATGTGTG 59.756 50.000 33.25 17.98 0.00 3.82
123 124 2.859870 CGCCATGTGTGCAAAAATTC 57.140 45.000 0.00 0.00 0.00 2.17
124 125 2.406130 CGCCATGTGTGCAAAAATTCT 58.594 42.857 0.00 0.00 0.00 2.40
125 126 2.156117 CGCCATGTGTGCAAAAATTCTG 59.844 45.455 0.00 0.00 0.00 3.02
126 127 3.391965 GCCATGTGTGCAAAAATTCTGA 58.608 40.909 0.00 0.00 0.00 3.27
127 128 3.184986 GCCATGTGTGCAAAAATTCTGAC 59.815 43.478 0.00 0.00 0.00 3.51
128 129 4.624015 CCATGTGTGCAAAAATTCTGACT 58.376 39.130 0.00 0.00 0.00 3.41
129 130 5.771469 CCATGTGTGCAAAAATTCTGACTA 58.229 37.500 0.00 0.00 0.00 2.59
130 131 6.392354 CCATGTGTGCAAAAATTCTGACTAT 58.608 36.000 0.00 0.00 0.00 2.12
131 132 6.869913 CCATGTGTGCAAAAATTCTGACTATT 59.130 34.615 0.00 0.00 0.00 1.73
132 133 7.385752 CCATGTGTGCAAAAATTCTGACTATTT 59.614 33.333 0.00 0.00 0.00 1.40
133 134 7.697352 TGTGTGCAAAAATTCTGACTATTTG 57.303 32.000 0.00 0.00 34.84 2.32
136 137 5.440260 GCAAAAATTCTGACTATTTGCCG 57.560 39.130 16.35 0.77 46.14 5.69
137 138 4.201618 GCAAAAATTCTGACTATTTGCCGC 60.202 41.667 16.35 5.41 46.14 6.53
138 139 3.782889 AAATTCTGACTATTTGCCGCC 57.217 42.857 0.00 0.00 0.00 6.13
139 140 1.680338 ATTCTGACTATTTGCCGCCC 58.320 50.000 0.00 0.00 0.00 6.13
140 141 0.393808 TTCTGACTATTTGCCGCCCC 60.394 55.000 0.00 0.00 0.00 5.80
141 142 1.077787 CTGACTATTTGCCGCCCCA 60.078 57.895 0.00 0.00 0.00 4.96
142 143 0.466189 CTGACTATTTGCCGCCCCAT 60.466 55.000 0.00 0.00 0.00 4.00
143 144 0.751277 TGACTATTTGCCGCCCCATG 60.751 55.000 0.00 0.00 0.00 3.66
144 145 2.075426 GACTATTTGCCGCCCCATGC 62.075 60.000 0.00 0.00 0.00 4.06
155 156 2.723124 GCCCCATGCGGTAAATAATG 57.277 50.000 0.00 0.00 0.00 1.90
156 157 2.235016 GCCCCATGCGGTAAATAATGA 58.765 47.619 0.00 0.00 0.00 2.57
157 158 2.825532 GCCCCATGCGGTAAATAATGAT 59.174 45.455 0.00 0.00 0.00 2.45
158 159 3.258123 GCCCCATGCGGTAAATAATGATT 59.742 43.478 0.00 0.00 0.00 2.57
159 160 4.618227 GCCCCATGCGGTAAATAATGATTC 60.618 45.833 0.00 0.00 0.00 2.52
160 161 4.766891 CCCCATGCGGTAAATAATGATTCT 59.233 41.667 0.00 0.00 0.00 2.40
161 162 5.106157 CCCCATGCGGTAAATAATGATTCTC 60.106 44.000 0.00 0.00 0.00 2.87
162 163 5.473162 CCCATGCGGTAAATAATGATTCTCA 59.527 40.000 0.00 0.00 0.00 3.27
163 164 6.348786 CCCATGCGGTAAATAATGATTCTCAG 60.349 42.308 0.00 0.00 0.00 3.35
164 165 6.427853 CCATGCGGTAAATAATGATTCTCAGA 59.572 38.462 0.00 0.00 0.00 3.27
165 166 7.120285 CCATGCGGTAAATAATGATTCTCAGAT 59.880 37.037 0.00 0.00 0.00 2.90
166 167 7.425577 TGCGGTAAATAATGATTCTCAGATG 57.574 36.000 0.00 0.00 0.00 2.90
167 168 6.073058 TGCGGTAAATAATGATTCTCAGATGC 60.073 38.462 0.00 0.00 0.00 3.91
168 169 6.073058 GCGGTAAATAATGATTCTCAGATGCA 60.073 38.462 0.00 0.00 0.00 3.96
169 170 7.361542 GCGGTAAATAATGATTCTCAGATGCAT 60.362 37.037 0.00 0.00 0.00 3.96
170 171 7.961283 CGGTAAATAATGATTCTCAGATGCATG 59.039 37.037 2.46 0.00 0.00 4.06
171 172 8.242053 GGTAAATAATGATTCTCAGATGCATGG 58.758 37.037 2.46 0.00 0.00 3.66
172 173 6.835819 AATAATGATTCTCAGATGCATGGG 57.164 37.500 2.46 0.00 0.00 4.00
173 174 1.977056 TGATTCTCAGATGCATGGGC 58.023 50.000 2.46 0.00 41.68 5.36
183 184 3.790223 GCATGGGCAGGAAACCAA 58.210 55.556 0.00 0.00 40.73 3.67
184 185 2.289840 GCATGGGCAGGAAACCAAT 58.710 52.632 0.00 0.00 40.73 3.16
185 186 0.108041 GCATGGGCAGGAAACCAATG 60.108 55.000 0.00 0.00 40.73 2.82
186 187 0.538118 CATGGGCAGGAAACCAATGG 59.462 55.000 0.00 0.00 40.73 3.16
187 188 0.618393 ATGGGCAGGAAACCAATGGG 60.618 55.000 3.55 0.00 40.73 4.00
188 189 2.659063 GGGCAGGAAACCAATGGGC 61.659 63.158 3.55 0.00 37.90 5.36
189 190 1.610379 GGCAGGAAACCAATGGGCT 60.610 57.895 3.55 0.00 37.90 5.19
190 191 1.194121 GGCAGGAAACCAATGGGCTT 61.194 55.000 3.55 0.00 37.90 4.35
191 192 0.037046 GCAGGAAACCAATGGGCTTG 60.037 55.000 3.55 0.55 37.90 4.01
192 193 0.037046 CAGGAAACCAATGGGCTTGC 60.037 55.000 3.55 1.85 37.90 4.01
193 194 0.178924 AGGAAACCAATGGGCTTGCT 60.179 50.000 3.55 4.38 36.26 3.91
194 195 0.686789 GGAAACCAATGGGCTTGCTT 59.313 50.000 3.55 0.00 37.90 3.91
195 196 1.072173 GGAAACCAATGGGCTTGCTTT 59.928 47.619 3.55 0.00 37.90 3.51
196 197 2.145536 GAAACCAATGGGCTTGCTTTG 58.854 47.619 3.55 0.00 37.90 2.77
197 198 0.250424 AACCAATGGGCTTGCTTTGC 60.250 50.000 3.55 0.00 37.90 3.68
198 199 1.123246 ACCAATGGGCTTGCTTTGCT 61.123 50.000 3.55 0.00 37.90 3.91
199 200 0.672401 CCAATGGGCTTGCTTTGCTG 60.672 55.000 0.00 0.00 33.20 4.41
200 201 0.672401 CAATGGGCTTGCTTTGCTGG 60.672 55.000 0.00 0.00 0.00 4.85
201 202 1.833787 AATGGGCTTGCTTTGCTGGG 61.834 55.000 0.00 0.00 0.00 4.45
202 203 4.383861 GGGCTTGCTTTGCTGGGC 62.384 66.667 0.00 0.00 0.00 5.36
203 204 3.308705 GGCTTGCTTTGCTGGGCT 61.309 61.111 0.00 0.00 0.00 5.19
204 205 2.048503 GCTTGCTTTGCTGGGCTG 60.049 61.111 0.00 0.00 0.00 4.85
205 206 2.654877 CTTGCTTTGCTGGGCTGG 59.345 61.111 0.00 0.00 0.00 4.85
206 207 1.904865 CTTGCTTTGCTGGGCTGGA 60.905 57.895 0.00 0.00 0.00 3.86
207 208 1.874345 CTTGCTTTGCTGGGCTGGAG 61.874 60.000 0.00 0.00 0.00 3.86
208 209 3.756727 GCTTTGCTGGGCTGGAGC 61.757 66.667 0.00 0.00 41.14 4.70
209 210 3.437795 CTTTGCTGGGCTGGAGCG 61.438 66.667 0.00 0.00 43.26 5.03
210 211 3.907260 CTTTGCTGGGCTGGAGCGA 62.907 63.158 0.00 0.00 43.26 4.93
211 212 3.907260 TTTGCTGGGCTGGAGCGAG 62.907 63.158 0.00 0.00 43.26 5.03
226 227 4.409218 GAGCGCGACCCACGTACA 62.409 66.667 12.10 0.00 44.60 2.90
227 228 3.902162 GAGCGCGACCCACGTACAA 62.902 63.158 12.10 0.00 44.60 2.41
228 229 3.037249 GCGCGACCCACGTACAAA 61.037 61.111 12.10 0.00 44.60 2.83
229 230 2.596795 GCGCGACCCACGTACAAAA 61.597 57.895 12.10 0.00 44.60 2.44
230 231 1.903783 GCGCGACCCACGTACAAAAT 61.904 55.000 12.10 0.00 44.60 1.82
231 232 0.513820 CGCGACCCACGTACAAAATT 59.486 50.000 0.00 0.00 44.60 1.82
232 233 1.725706 CGCGACCCACGTACAAAATTA 59.274 47.619 0.00 0.00 44.60 1.40
233 234 2.222640 CGCGACCCACGTACAAAATTAG 60.223 50.000 0.00 0.00 44.60 1.73
234 235 2.094734 GCGACCCACGTACAAAATTAGG 59.905 50.000 0.00 0.00 44.60 2.69
235 236 2.674357 CGACCCACGTACAAAATTAGGG 59.326 50.000 0.53 0.53 40.66 3.53
236 237 3.617045 CGACCCACGTACAAAATTAGGGA 60.617 47.826 8.66 0.00 38.21 4.20
237 238 3.678289 ACCCACGTACAAAATTAGGGAC 58.322 45.455 8.66 0.00 38.21 4.46
238 239 3.072768 ACCCACGTACAAAATTAGGGACA 59.927 43.478 8.66 0.00 38.21 4.02
239 240 4.263594 ACCCACGTACAAAATTAGGGACAT 60.264 41.667 8.66 0.00 38.21 3.06
240 241 5.045724 ACCCACGTACAAAATTAGGGACATA 60.046 40.000 8.66 0.00 38.21 2.29
241 242 5.881443 CCCACGTACAAAATTAGGGACATAA 59.119 40.000 0.00 0.00 36.96 1.90
242 243 6.183360 CCCACGTACAAAATTAGGGACATAAC 60.183 42.308 0.00 0.00 36.96 1.89
243 244 6.596497 CCACGTACAAAATTAGGGACATAACT 59.404 38.462 0.00 0.00 0.00 2.24
244 245 7.413657 CCACGTACAAAATTAGGGACATAACTG 60.414 40.741 0.00 0.00 0.00 3.16
245 246 7.118680 CACGTACAAAATTAGGGACATAACTGT 59.881 37.037 0.00 0.00 38.67 3.55
246 247 7.662669 ACGTACAAAATTAGGGACATAACTGTT 59.337 33.333 0.00 0.00 35.14 3.16
247 248 8.508875 CGTACAAAATTAGGGACATAACTGTTT 58.491 33.333 0.00 0.00 35.14 2.83
250 251 9.758651 ACAAAATTAGGGACATAACTGTTTTTC 57.241 29.630 0.00 0.00 35.14 2.29
251 252 9.981114 CAAAATTAGGGACATAACTGTTTTTCT 57.019 29.630 0.00 0.00 35.14 2.52
256 257 7.898014 AGGGACATAACTGTTTTTCTTTTCT 57.102 32.000 0.00 0.00 35.14 2.52
257 258 8.990163 AGGGACATAACTGTTTTTCTTTTCTA 57.010 30.769 0.00 0.00 35.14 2.10
258 259 9.416284 AGGGACATAACTGTTTTTCTTTTCTAA 57.584 29.630 0.00 0.00 35.14 2.10
264 265 9.893305 ATAACTGTTTTTCTTTTCTAATGGACG 57.107 29.630 0.00 0.00 0.00 4.79
265 266 6.206498 ACTGTTTTTCTTTTCTAATGGACGC 58.794 36.000 0.00 0.00 0.00 5.19
266 267 6.137794 TGTTTTTCTTTTCTAATGGACGCA 57.862 33.333 0.00 0.00 0.00 5.24
267 268 5.974751 TGTTTTTCTTTTCTAATGGACGCAC 59.025 36.000 0.00 0.00 0.00 5.34
268 269 5.759506 TTTTCTTTTCTAATGGACGCACA 57.240 34.783 0.00 0.00 0.00 4.57
269 270 5.759506 TTTCTTTTCTAATGGACGCACAA 57.240 34.783 0.00 0.00 0.00 3.33
270 271 5.759506 TTCTTTTCTAATGGACGCACAAA 57.240 34.783 0.00 0.00 0.00 2.83
271 272 5.759506 TCTTTTCTAATGGACGCACAAAA 57.240 34.783 0.00 0.00 0.00 2.44
272 273 6.137794 TCTTTTCTAATGGACGCACAAAAA 57.862 33.333 0.00 0.00 0.00 1.94
273 274 6.744112 TCTTTTCTAATGGACGCACAAAAAT 58.256 32.000 0.00 0.00 0.00 1.82
274 275 7.206687 TCTTTTCTAATGGACGCACAAAAATT 58.793 30.769 0.00 0.00 0.00 1.82
275 276 7.708752 TCTTTTCTAATGGACGCACAAAAATTT 59.291 29.630 0.00 0.00 0.00 1.82
276 277 8.873215 TTTTCTAATGGACGCACAAAAATTTA 57.127 26.923 0.00 0.00 0.00 1.40
277 278 8.514136 TTTCTAATGGACGCACAAAAATTTAG 57.486 30.769 0.00 0.00 0.00 1.85
278 279 7.209471 TCTAATGGACGCACAAAAATTTAGT 57.791 32.000 0.00 0.00 0.00 2.24
279 280 8.325421 TCTAATGGACGCACAAAAATTTAGTA 57.675 30.769 0.00 0.00 0.00 1.82
280 281 8.231837 TCTAATGGACGCACAAAAATTTAGTAC 58.768 33.333 0.00 0.00 0.00 2.73
281 282 6.569179 ATGGACGCACAAAAATTTAGTACT 57.431 33.333 0.00 0.00 0.00 2.73
282 283 6.380095 TGGACGCACAAAAATTTAGTACTT 57.620 33.333 0.00 0.00 0.00 2.24
283 284 6.432107 TGGACGCACAAAAATTTAGTACTTC 58.568 36.000 0.00 0.00 0.00 3.01
284 285 6.038382 TGGACGCACAAAAATTTAGTACTTCA 59.962 34.615 0.00 0.00 0.00 3.02
285 286 7.081976 GGACGCACAAAAATTTAGTACTTCAT 58.918 34.615 0.00 0.00 0.00 2.57
286 287 7.270579 GGACGCACAAAAATTTAGTACTTCATC 59.729 37.037 0.00 0.00 0.00 2.92
287 288 7.871853 ACGCACAAAAATTTAGTACTTCATCT 58.128 30.769 0.00 0.00 0.00 2.90
288 289 8.995220 ACGCACAAAAATTTAGTACTTCATCTA 58.005 29.630 0.00 0.00 0.00 1.98
289 290 9.988350 CGCACAAAAATTTAGTACTTCATCTAT 57.012 29.630 0.00 0.00 0.00 1.98
315 316 8.725405 AAAACAAAAATTTAGTACCACCTTGG 57.275 30.769 0.00 0.00 45.02 3.61
316 317 7.663043 AACAAAAATTTAGTACCACCTTGGA 57.337 32.000 0.00 0.00 40.96 3.53
317 318 7.849322 ACAAAAATTTAGTACCACCTTGGAT 57.151 32.000 0.00 0.00 40.96 3.41
318 319 8.943594 ACAAAAATTTAGTACCACCTTGGATA 57.056 30.769 0.00 0.00 40.96 2.59
319 320 9.020731 ACAAAAATTTAGTACCACCTTGGATAG 57.979 33.333 0.00 0.00 40.96 2.08
320 321 9.238368 CAAAAATTTAGTACCACCTTGGATAGA 57.762 33.333 0.00 0.00 40.96 1.98
321 322 9.816787 AAAAATTTAGTACCACCTTGGATAGAA 57.183 29.630 0.00 0.00 40.96 2.10
322 323 9.816787 AAAATTTAGTACCACCTTGGATAGAAA 57.183 29.630 0.00 0.00 40.96 2.52
323 324 9.816787 AAATTTAGTACCACCTTGGATAGAAAA 57.183 29.630 0.00 0.00 40.96 2.29
324 325 9.816787 AATTTAGTACCACCTTGGATAGAAAAA 57.183 29.630 0.00 0.00 40.96 1.94
346 347 5.873179 AAAAATCGATGCTAAACGGAAGA 57.127 34.783 0.00 0.00 0.00 2.87
347 348 5.873179 AAAATCGATGCTAAACGGAAGAA 57.127 34.783 0.00 0.00 0.00 2.52
348 349 5.873179 AAATCGATGCTAAACGGAAGAAA 57.127 34.783 0.00 0.00 0.00 2.52
349 350 5.873179 AATCGATGCTAAACGGAAGAAAA 57.127 34.783 0.00 0.00 0.00 2.29
350 351 5.873179 ATCGATGCTAAACGGAAGAAAAA 57.127 34.783 0.00 0.00 0.00 1.94
430 431 9.094578 AGATATAAAGACTAGGCATGCTTTCTA 57.905 33.333 18.92 9.69 33.16 2.10
433 434 6.749923 AAAGACTAGGCATGCTTTCTAAAG 57.250 37.500 18.92 6.31 39.03 1.85
512 513 3.047877 GAAACCTCACCCACGCCG 61.048 66.667 0.00 0.00 0.00 6.46
529 530 5.092781 CACGCCGTAGCTTTTTCATTTTAT 58.907 37.500 0.00 0.00 36.60 1.40
538 539 9.938280 GTAGCTTTTTCATTTTATTTTAGGGGT 57.062 29.630 0.00 0.00 0.00 4.95
548 549 9.296400 CATTTTATTTTAGGGGTTCAATACACG 57.704 33.333 0.00 0.00 0.00 4.49
552 553 6.503589 TTTTAGGGGTTCAATACACGAATG 57.496 37.500 0.00 0.00 0.00 2.67
618 620 9.956720 ATCTCAAAAATAAGTGTCTCAACTTTG 57.043 29.630 0.00 0.00 40.77 2.77
619 621 8.956426 TCTCAAAAATAAGTGTCTCAACTTTGT 58.044 29.630 0.00 0.00 40.77 2.83
621 623 9.997482 TCAAAAATAAGTGTCTCAACTTTGTAC 57.003 29.630 0.00 0.00 40.77 2.90
626 628 9.826574 AATAAGTGTCTCAACTTTGTACTAACA 57.173 29.630 0.00 0.00 40.77 2.41
635 713 3.847780 ACTTTGTACTAACATGGGCCCTA 59.152 43.478 25.70 10.18 34.97 3.53
671 893 7.470079 CATGCTATGCAGACCATAAATATGTC 58.530 38.462 0.00 0.00 43.65 3.06
680 902 6.043243 CAGACCATAAATATGTCCAGGTAGGT 59.957 42.308 0.16 0.00 39.02 3.08
689 911 3.681593 TGTCCAGGTAGGTAAAATGTGC 58.318 45.455 0.00 0.00 39.02 4.57
690 912 3.329520 TGTCCAGGTAGGTAAAATGTGCT 59.670 43.478 0.00 0.00 39.02 4.40
715 939 2.128771 ACACACCTCTGCAAGTTTGT 57.871 45.000 0.00 0.00 33.76 2.83
716 940 2.017049 ACACACCTCTGCAAGTTTGTC 58.983 47.619 0.00 0.00 33.76 3.18
717 941 2.292267 CACACCTCTGCAAGTTTGTCT 58.708 47.619 0.00 0.00 33.76 3.41
721 1103 1.072965 CCTCTGCAAGTTTGTCTCCCT 59.927 52.381 0.00 0.00 33.76 4.20
936 1343 0.396435 CCCCCAAAACCCAAAAGCTC 59.604 55.000 0.00 0.00 0.00 4.09
937 1344 1.127343 CCCCAAAACCCAAAAGCTCA 58.873 50.000 0.00 0.00 0.00 4.26
978 1693 4.508124 CGCTCCATTAACAACTCCATCTAC 59.492 45.833 0.00 0.00 0.00 2.59
979 1694 5.675538 GCTCCATTAACAACTCCATCTACT 58.324 41.667 0.00 0.00 0.00 2.57
980 1695 6.461092 CGCTCCATTAACAACTCCATCTACTA 60.461 42.308 0.00 0.00 0.00 1.82
1125 1861 0.249073 CGACCGGACCATGTGAGATC 60.249 60.000 9.46 0.00 0.00 2.75
1135 1871 3.181418 ACCATGTGAGATCCCTGGTTTTT 60.181 43.478 0.00 0.00 36.86 1.94
1136 1872 3.445096 CCATGTGAGATCCCTGGTTTTTC 59.555 47.826 0.00 0.00 0.00 2.29
1137 1873 2.778299 TGTGAGATCCCTGGTTTTTCG 58.222 47.619 0.00 0.00 0.00 3.46
1139 1875 1.004277 TGAGATCCCTGGTTTTTCGGG 59.996 52.381 0.00 0.00 39.41 5.14
1142 1878 2.117423 CCCTGGTTTTTCGGGGCT 59.883 61.111 0.00 0.00 45.48 5.19
1143 1879 2.275380 CCCTGGTTTTTCGGGGCTG 61.275 63.158 0.00 0.00 45.48 4.85
1187 1927 2.203084 TTGGTTGCGGCGAGTTCA 60.203 55.556 12.98 0.00 0.00 3.18
1201 1941 2.604914 CGAGTTCATTCCTGATCGGTTG 59.395 50.000 0.00 2.76 32.69 3.77
1343 2083 4.966787 TTGGCCGTGGAGGTTGCC 62.967 66.667 0.00 0.00 43.70 4.52
1435 2175 2.651361 CTCACGGTCGCTCCTGTT 59.349 61.111 0.00 0.00 0.00 3.16
1458 2198 4.584743 TCTCGGATGCTCATGTTATGTACT 59.415 41.667 0.00 0.00 0.00 2.73
1490 2238 0.599991 AGTGTGCGCGACAGAAATGA 60.600 50.000 12.10 0.00 34.28 2.57
1633 2381 1.070134 AGTTGCCGTTCTTACTGCTGA 59.930 47.619 0.00 0.00 35.73 4.26
1637 2385 3.932822 TGCCGTTCTTACTGCTGATTTA 58.067 40.909 0.00 0.00 35.73 1.40
1718 2466 2.122413 AGGAGGTGGTCACTGCCA 60.122 61.111 12.52 0.00 35.93 4.92
1929 2677 2.294449 AGAGAGCTGAGGTGTGTGTA 57.706 50.000 0.00 0.00 0.00 2.90
1941 2689 2.418628 GGTGTGTGTAACCATCCATTCG 59.581 50.000 0.00 0.00 37.65 3.34
1988 2736 5.088739 GCATGTTTACGGATTCTTTCAGTG 58.911 41.667 0.00 0.00 34.42 3.66
2022 2770 6.966021 TGCTGTGGTGTTTCTTACTTAATTC 58.034 36.000 0.00 0.00 0.00 2.17
2136 2884 4.994471 TCACCTGTGGCAGCAGCG 62.994 66.667 10.40 7.41 43.41 5.18
2230 2978 5.756195 TGCAGATTATGTGCCTGTTAATC 57.244 39.130 11.79 0.00 40.43 1.75
2351 3099 3.526931 AATACATCGTCACCTGACCAG 57.473 47.619 0.00 0.00 41.86 4.00
2462 3210 1.237285 ACGGGAATTGCACAGACAGC 61.237 55.000 0.00 0.00 0.00 4.40
2710 3458 0.250901 GCACAGGAAGAAAGCCCTCA 60.251 55.000 0.00 0.00 0.00 3.86
2719 3467 1.713078 AGAAAGCCCTCAAATCCAGGT 59.287 47.619 0.00 0.00 0.00 4.00
2906 3654 2.290260 TGCAAATCAGACGAAGATGGGT 60.290 45.455 0.00 0.00 0.00 4.51
2961 3709 1.279496 TGCAAGCCTCTCTACATGGT 58.721 50.000 0.00 0.00 0.00 3.55
2964 3712 3.263170 TGCAAGCCTCTCTACATGGTTAA 59.737 43.478 0.00 0.00 0.00 2.01
3147 3895 1.066858 GTGAAGAGGTGCCGATCTTGA 60.067 52.381 0.00 0.00 35.93 3.02
3227 3975 3.879892 GGTCTGATTCAGGAACTAATGGC 59.120 47.826 13.59 0.00 36.02 4.40
3266 4014 3.868077 GCAAATACAGAGAGGTGCACTAG 59.132 47.826 17.98 3.22 32.29 2.57
3278 4026 0.812549 TGCACTAGACACGCCGAATA 59.187 50.000 0.00 0.00 0.00 1.75
3305 4053 8.927721 CAATCATGTATTTCTTGCAATTGTGAA 58.072 29.630 7.40 6.90 0.00 3.18
3306 4054 7.872163 TCATGTATTTCTTGCAATTGTGAAC 57.128 32.000 7.40 0.00 0.00 3.18
3327 4075 8.371053 GTGAACGATATACTTATCCGTTAATGC 58.629 37.037 0.00 0.00 34.61 3.56
3442 4190 4.578105 GGCACTGCTGCTAAAGATCTTTAT 59.422 41.667 24.56 8.55 43.66 1.40
3445 4193 7.040823 GGCACTGCTGCTAAAGATCTTTATTAT 60.041 37.037 24.56 5.20 43.66 1.28
3446 4194 8.348507 GCACTGCTGCTAAAGATCTTTATTATT 58.651 33.333 24.56 4.50 40.63 1.40
3493 4256 6.759497 AAAGAATATCCCACTTTGTGTAGC 57.241 37.500 0.00 0.00 33.49 3.58
3494 4257 5.435686 AGAATATCCCACTTTGTGTAGCA 57.564 39.130 0.00 0.00 0.00 3.49
3495 4258 5.815581 AGAATATCCCACTTTGTGTAGCAA 58.184 37.500 0.00 0.00 34.87 3.91
3496 4259 6.245408 AGAATATCCCACTTTGTGTAGCAAA 58.755 36.000 0.00 0.00 44.05 3.68
3497 4260 6.719370 AGAATATCCCACTTTGTGTAGCAAAA 59.281 34.615 0.00 0.00 45.35 2.44
3498 4261 6.909550 ATATCCCACTTTGTGTAGCAAAAA 57.090 33.333 0.00 0.00 45.35 1.94
3675 4468 5.774690 TGGTTATTGGTTGCTCATCTTTTCT 59.225 36.000 0.00 0.00 0.00 2.52
3704 4497 6.591448 CCCATGTTTCTTAAAATTTCCAGCTC 59.409 38.462 0.00 0.00 0.00 4.09
3725 4518 5.509622 GCTCGCTTTCATTTTTCTATGACAC 59.490 40.000 0.00 0.00 34.41 3.67
3727 4520 4.788100 CGCTTTCATTTTTCTATGACACCG 59.212 41.667 0.00 0.00 34.41 4.94
3793 4586 0.109597 GCTGGCACAACCTCGATTTG 60.110 55.000 5.57 5.57 38.70 2.32
3844 4637 1.623811 GAACAAGGTAGTCCTGGCAGA 59.376 52.381 17.94 0.00 44.35 4.26
3886 4697 4.563140 TTTTAAATGCTACTCCCTCCGT 57.437 40.909 0.00 0.00 0.00 4.69
3887 4698 5.680594 TTTTAAATGCTACTCCCTCCGTA 57.319 39.130 0.00 0.00 0.00 4.02
3888 4699 4.931661 TTAAATGCTACTCCCTCCGTAG 57.068 45.455 0.00 0.00 37.88 3.51
3889 4700 2.456073 AATGCTACTCCCTCCGTAGT 57.544 50.000 0.00 0.00 37.31 2.73
3890 4701 1.693627 ATGCTACTCCCTCCGTAGTG 58.306 55.000 0.00 0.00 37.31 2.74
3891 4702 0.330604 TGCTACTCCCTCCGTAGTGT 59.669 55.000 0.00 0.00 37.31 3.55
3892 4703 1.561076 TGCTACTCCCTCCGTAGTGTA 59.439 52.381 0.00 0.00 37.31 2.90
3893 4704 2.025981 TGCTACTCCCTCCGTAGTGTAA 60.026 50.000 0.00 0.00 37.31 2.41
3894 4705 3.019564 GCTACTCCCTCCGTAGTGTAAA 58.980 50.000 0.00 0.00 37.31 2.01
3895 4706 3.445096 GCTACTCCCTCCGTAGTGTAAAA 59.555 47.826 0.00 0.00 37.31 1.52
3896 4707 4.082026 GCTACTCCCTCCGTAGTGTAAAAA 60.082 45.833 0.00 0.00 37.31 1.94
3897 4708 4.263018 ACTCCCTCCGTAGTGTAAAAAC 57.737 45.455 0.00 0.00 0.00 2.43
3898 4709 3.248266 CTCCCTCCGTAGTGTAAAAACG 58.752 50.000 0.00 0.00 36.42 3.60
3899 4710 1.728425 CCCTCCGTAGTGTAAAAACGC 59.272 52.381 0.00 0.00 35.36 4.84
3900 4711 2.611224 CCCTCCGTAGTGTAAAAACGCT 60.611 50.000 0.00 0.00 35.36 5.07
3901 4712 2.665052 CCTCCGTAGTGTAAAAACGCTC 59.335 50.000 0.00 0.00 35.36 5.03
3902 4713 3.572584 CTCCGTAGTGTAAAAACGCTCT 58.427 45.455 0.00 0.00 35.36 4.09
3903 4714 3.981211 TCCGTAGTGTAAAAACGCTCTT 58.019 40.909 0.00 0.00 35.36 2.85
3904 4715 5.119931 TCCGTAGTGTAAAAACGCTCTTA 57.880 39.130 0.00 0.00 35.36 2.10
3905 4716 5.713025 TCCGTAGTGTAAAAACGCTCTTAT 58.287 37.500 0.00 0.00 35.36 1.73
3906 4717 6.851609 TCCGTAGTGTAAAAACGCTCTTATA 58.148 36.000 0.00 0.00 35.36 0.98
3907 4718 7.483307 TCCGTAGTGTAAAAACGCTCTTATAT 58.517 34.615 0.00 0.00 35.36 0.86
3908 4719 7.975616 TCCGTAGTGTAAAAACGCTCTTATATT 59.024 33.333 0.00 0.00 35.36 1.28
3909 4720 9.236691 CCGTAGTGTAAAAACGCTCTTATATTA 57.763 33.333 0.00 0.00 35.36 0.98
3913 4724 9.052759 AGTGTAAAAACGCTCTTATATTATGGG 57.947 33.333 0.00 0.00 0.00 4.00
3914 4725 9.048446 GTGTAAAAACGCTCTTATATTATGGGA 57.952 33.333 0.00 0.00 0.00 4.37
3915 4726 9.048446 TGTAAAAACGCTCTTATATTATGGGAC 57.952 33.333 0.00 0.00 0.00 4.46
3916 4727 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3917 4728 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3918 4729 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3919 4730 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4020 4831 8.221766 CCTGTCTTATTGTTTCTTCGAACTAAC 58.778 37.037 0.00 2.21 0.00 2.34
4126 4937 6.574462 GCAAACATTGTGTTCATATTGCAAAC 59.426 34.615 1.71 0.00 40.14 2.93
4151 4962 4.202080 ATGGTTCACATGATGCAATACTGC 60.202 41.667 0.00 0.00 43.16 4.40
4188 5191 1.899054 TTTTGCGGCGACCAATGGA 60.899 52.632 12.98 0.00 0.00 3.41
4202 5205 5.622007 CGACCAATGGAATTTGTTGCATACT 60.622 40.000 6.16 0.00 31.63 2.12
4251 5258 5.617528 TGAAGTAGTGTGACCCTTTGTAA 57.382 39.130 0.00 0.00 0.00 2.41
4277 5284 6.703319 TGTTATCCATGTAGAGAAAACCGAA 58.297 36.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.979855 GGCCAGCCCATTTTGTTTTT 58.020 45.000 0.00 0.00 0.00 1.94
75 76 3.723772 GGCCAGCCCATTTTGTTTT 57.276 47.368 0.00 0.00 0.00 2.43
94 95 0.244450 ACACATGGCGCCAAAGATTG 59.756 50.000 36.33 28.27 0.00 2.67
95 96 0.244450 CACACATGGCGCCAAAGATT 59.756 50.000 36.33 14.67 0.00 2.40
96 97 1.885157 CACACATGGCGCCAAAGAT 59.115 52.632 36.33 15.14 0.00 2.40
97 98 2.918345 GCACACATGGCGCCAAAGA 61.918 57.895 36.33 10.72 0.00 2.52
98 99 2.431260 GCACACATGGCGCCAAAG 60.431 61.111 36.33 29.89 0.00 2.77
99 100 2.302199 TTTGCACACATGGCGCCAAA 62.302 50.000 36.33 18.90 0.00 3.28
100 101 2.302199 TTTTGCACACATGGCGCCAA 62.302 50.000 36.33 17.74 0.00 4.52
101 102 2.302199 TTTTTGCACACATGGCGCCA 62.302 50.000 34.80 34.80 0.00 5.69
102 103 0.950071 ATTTTTGCACACATGGCGCC 60.950 50.000 22.73 22.73 0.00 6.53
103 104 0.867086 AATTTTTGCACACATGGCGC 59.133 45.000 0.00 0.00 0.00 6.53
104 105 2.156117 CAGAATTTTTGCACACATGGCG 59.844 45.455 0.00 0.00 0.00 5.69
105 106 3.184986 GTCAGAATTTTTGCACACATGGC 59.815 43.478 0.00 0.00 0.00 4.40
106 107 4.624015 AGTCAGAATTTTTGCACACATGG 58.376 39.130 0.00 0.00 0.00 3.66
107 108 7.878477 AATAGTCAGAATTTTTGCACACATG 57.122 32.000 0.00 0.00 0.00 3.21
108 109 7.095523 GCAAATAGTCAGAATTTTTGCACACAT 60.096 33.333 24.78 0.00 46.96 3.21
109 110 6.200665 GCAAATAGTCAGAATTTTTGCACACA 59.799 34.615 24.78 0.00 46.96 3.72
110 111 6.584056 GCAAATAGTCAGAATTTTTGCACAC 58.416 36.000 24.78 4.44 46.96 3.82
111 112 6.768029 GCAAATAGTCAGAATTTTTGCACA 57.232 33.333 24.78 0.00 46.96 4.57
115 116 4.327087 GGCGGCAAATAGTCAGAATTTTTG 59.673 41.667 3.07 8.83 0.00 2.44
116 117 4.494484 GGCGGCAAATAGTCAGAATTTTT 58.506 39.130 3.07 0.00 0.00 1.94
117 118 3.119137 GGGCGGCAAATAGTCAGAATTTT 60.119 43.478 12.47 0.00 0.00 1.82
118 119 2.427095 GGGCGGCAAATAGTCAGAATTT 59.573 45.455 12.47 0.00 0.00 1.82
119 120 2.024414 GGGCGGCAAATAGTCAGAATT 58.976 47.619 12.47 0.00 0.00 2.17
120 121 1.680338 GGGCGGCAAATAGTCAGAAT 58.320 50.000 12.47 0.00 0.00 2.40
121 122 0.393808 GGGGCGGCAAATAGTCAGAA 60.394 55.000 12.47 0.00 0.00 3.02
122 123 1.223487 GGGGCGGCAAATAGTCAGA 59.777 57.895 12.47 0.00 0.00 3.27
123 124 0.466189 ATGGGGCGGCAAATAGTCAG 60.466 55.000 12.47 0.00 0.00 3.51
124 125 0.751277 CATGGGGCGGCAAATAGTCA 60.751 55.000 12.47 0.00 0.00 3.41
125 126 2.032981 CATGGGGCGGCAAATAGTC 58.967 57.895 12.47 0.00 0.00 2.59
126 127 2.127232 GCATGGGGCGGCAAATAGT 61.127 57.895 12.47 0.00 0.00 2.12
127 128 2.730094 GCATGGGGCGGCAAATAG 59.270 61.111 12.47 0.00 0.00 1.73
136 137 2.235016 TCATTATTTACCGCATGGGGC 58.765 47.619 27.59 0.00 41.60 5.80
137 138 4.766891 AGAATCATTATTTACCGCATGGGG 59.233 41.667 26.22 26.22 41.60 4.96
138 139 5.473162 TGAGAATCATTATTTACCGCATGGG 59.527 40.000 2.06 2.06 42.56 4.00
139 140 6.558771 TGAGAATCATTATTTACCGCATGG 57.441 37.500 0.00 0.00 42.56 3.66
147 148 7.094075 GCCCATGCATCTGAGAATCATTATTTA 60.094 37.037 0.00 0.00 40.69 1.40
148 149 6.295123 GCCCATGCATCTGAGAATCATTATTT 60.295 38.462 0.00 0.00 40.69 1.40
149 150 5.185249 GCCCATGCATCTGAGAATCATTATT 59.815 40.000 0.00 0.00 40.69 1.40
150 151 4.705507 GCCCATGCATCTGAGAATCATTAT 59.294 41.667 0.00 0.00 40.69 1.28
151 152 4.077108 GCCCATGCATCTGAGAATCATTA 58.923 43.478 0.00 0.00 40.69 1.90
152 153 2.891580 GCCCATGCATCTGAGAATCATT 59.108 45.455 0.00 0.00 40.69 2.57
153 154 2.158519 TGCCCATGCATCTGAGAATCAT 60.159 45.455 0.00 0.00 44.37 2.45
154 155 1.213430 TGCCCATGCATCTGAGAATCA 59.787 47.619 0.00 0.00 43.53 2.57
155 156 1.977056 TGCCCATGCATCTGAGAATC 58.023 50.000 0.00 0.00 44.23 2.52
166 167 0.108041 CATTGGTTTCCTGCCCATGC 60.108 55.000 0.00 0.00 38.26 4.06
167 168 0.538118 CCATTGGTTTCCTGCCCATG 59.462 55.000 0.00 0.00 0.00 3.66
168 169 0.618393 CCCATTGGTTTCCTGCCCAT 60.618 55.000 1.20 0.00 0.00 4.00
169 170 1.229145 CCCATTGGTTTCCTGCCCA 60.229 57.895 1.20 0.00 0.00 5.36
170 171 2.659063 GCCCATTGGTTTCCTGCCC 61.659 63.158 1.20 0.00 0.00 5.36
171 172 1.194121 AAGCCCATTGGTTTCCTGCC 61.194 55.000 1.20 0.00 26.98 4.85
172 173 0.037046 CAAGCCCATTGGTTTCCTGC 60.037 55.000 1.20 0.00 31.91 4.85
173 174 0.037046 GCAAGCCCATTGGTTTCCTG 60.037 55.000 1.20 0.00 39.47 3.86
174 175 2.365410 GCAAGCCCATTGGTTTCCT 58.635 52.632 1.20 0.00 39.47 3.36
180 181 0.672401 CAGCAAAGCAAGCCCATTGG 60.672 55.000 0.00 0.00 39.47 3.16
181 182 0.672401 CCAGCAAAGCAAGCCCATTG 60.672 55.000 0.00 0.00 42.20 2.82
182 183 1.675219 CCAGCAAAGCAAGCCCATT 59.325 52.632 0.00 0.00 0.00 3.16
183 184 2.288025 CCCAGCAAAGCAAGCCCAT 61.288 57.895 0.00 0.00 0.00 4.00
184 185 2.918802 CCCAGCAAAGCAAGCCCA 60.919 61.111 0.00 0.00 0.00 5.36
185 186 4.383861 GCCCAGCAAAGCAAGCCC 62.384 66.667 0.00 0.00 0.00 5.19
186 187 3.308705 AGCCCAGCAAAGCAAGCC 61.309 61.111 0.00 0.00 0.00 4.35
187 188 2.048503 CAGCCCAGCAAAGCAAGC 60.049 61.111 0.00 0.00 0.00 4.01
188 189 1.874345 CTCCAGCCCAGCAAAGCAAG 61.874 60.000 0.00 0.00 0.00 4.01
189 190 1.904865 CTCCAGCCCAGCAAAGCAA 60.905 57.895 0.00 0.00 0.00 3.91
190 191 2.282674 CTCCAGCCCAGCAAAGCA 60.283 61.111 0.00 0.00 0.00 3.91
191 192 3.756727 GCTCCAGCCCAGCAAAGC 61.757 66.667 0.00 0.00 36.82 3.51
192 193 3.437795 CGCTCCAGCCCAGCAAAG 61.438 66.667 0.00 0.00 36.61 2.77
193 194 3.907260 CTCGCTCCAGCCCAGCAAA 62.907 63.158 0.00 0.00 36.61 3.68
194 195 4.399395 CTCGCTCCAGCCCAGCAA 62.399 66.667 0.00 0.00 36.61 3.91
209 210 3.902162 TTGTACGTGGGTCGCGCTC 62.902 63.158 5.56 0.00 44.19 5.03
210 211 2.974935 TTTTGTACGTGGGTCGCGCT 62.975 55.000 5.56 0.00 44.19 5.92
211 212 1.903783 ATTTTGTACGTGGGTCGCGC 61.904 55.000 0.00 0.00 44.19 6.86
212 213 0.513820 AATTTTGTACGTGGGTCGCG 59.486 50.000 0.00 0.00 44.19 5.87
213 214 2.094734 CCTAATTTTGTACGTGGGTCGC 59.905 50.000 0.00 0.00 44.19 5.19
214 215 2.674357 CCCTAATTTTGTACGTGGGTCG 59.326 50.000 0.00 0.00 46.00 4.79
215 216 3.686241 GTCCCTAATTTTGTACGTGGGTC 59.314 47.826 0.00 0.00 35.00 4.46
216 217 3.072768 TGTCCCTAATTTTGTACGTGGGT 59.927 43.478 0.00 0.00 35.00 4.51
217 218 3.677190 TGTCCCTAATTTTGTACGTGGG 58.323 45.455 0.00 0.00 34.76 4.61
218 219 6.596497 AGTTATGTCCCTAATTTTGTACGTGG 59.404 38.462 0.00 0.00 0.00 4.94
219 220 7.118680 ACAGTTATGTCCCTAATTTTGTACGTG 59.881 37.037 0.00 0.00 32.99 4.49
220 221 7.163441 ACAGTTATGTCCCTAATTTTGTACGT 58.837 34.615 0.00 0.00 32.99 3.57
221 222 7.605410 ACAGTTATGTCCCTAATTTTGTACG 57.395 36.000 0.00 0.00 32.99 3.67
224 225 9.758651 GAAAAACAGTTATGTCCCTAATTTTGT 57.241 29.630 0.00 0.00 39.29 2.83
225 226 9.981114 AGAAAAACAGTTATGTCCCTAATTTTG 57.019 29.630 0.00 0.00 39.29 2.44
230 231 9.416284 AGAAAAGAAAAACAGTTATGTCCCTAA 57.584 29.630 0.00 0.00 39.29 2.69
231 232 8.990163 AGAAAAGAAAAACAGTTATGTCCCTA 57.010 30.769 0.00 0.00 39.29 3.53
232 233 7.898014 AGAAAAGAAAAACAGTTATGTCCCT 57.102 32.000 0.00 0.00 39.29 4.20
238 239 9.893305 CGTCCATTAGAAAAGAAAAACAGTTAT 57.107 29.630 0.00 0.00 0.00 1.89
239 240 7.858879 GCGTCCATTAGAAAAGAAAAACAGTTA 59.141 33.333 0.00 0.00 0.00 2.24
240 241 6.695713 GCGTCCATTAGAAAAGAAAAACAGTT 59.304 34.615 0.00 0.00 0.00 3.16
241 242 6.183360 TGCGTCCATTAGAAAAGAAAAACAGT 60.183 34.615 0.00 0.00 0.00 3.55
242 243 6.142320 GTGCGTCCATTAGAAAAGAAAAACAG 59.858 38.462 0.00 0.00 0.00 3.16
243 244 5.974751 GTGCGTCCATTAGAAAAGAAAAACA 59.025 36.000 0.00 0.00 0.00 2.83
244 245 5.974751 TGTGCGTCCATTAGAAAAGAAAAAC 59.025 36.000 0.00 0.00 0.00 2.43
245 246 6.137794 TGTGCGTCCATTAGAAAAGAAAAA 57.862 33.333 0.00 0.00 0.00 1.94
246 247 5.759506 TGTGCGTCCATTAGAAAAGAAAA 57.240 34.783 0.00 0.00 0.00 2.29
247 248 5.759506 TTGTGCGTCCATTAGAAAAGAAA 57.240 34.783 0.00 0.00 0.00 2.52
248 249 5.759506 TTTGTGCGTCCATTAGAAAAGAA 57.240 34.783 0.00 0.00 0.00 2.52
249 250 5.759506 TTTTGTGCGTCCATTAGAAAAGA 57.240 34.783 0.00 0.00 0.00 2.52
250 251 7.406799 AATTTTTGTGCGTCCATTAGAAAAG 57.593 32.000 0.00 0.00 0.00 2.27
251 252 7.778470 AAATTTTTGTGCGTCCATTAGAAAA 57.222 28.000 0.00 0.00 0.00 2.29
252 253 8.138712 ACTAAATTTTTGTGCGTCCATTAGAAA 58.861 29.630 0.00 0.00 0.00 2.52
253 254 7.653647 ACTAAATTTTTGTGCGTCCATTAGAA 58.346 30.769 0.00 0.00 0.00 2.10
254 255 7.209471 ACTAAATTTTTGTGCGTCCATTAGA 57.791 32.000 0.00 0.00 0.00 2.10
255 256 8.234546 AGTACTAAATTTTTGTGCGTCCATTAG 58.765 33.333 0.00 0.00 0.00 1.73
256 257 8.101654 AGTACTAAATTTTTGTGCGTCCATTA 57.898 30.769 0.00 0.00 0.00 1.90
257 258 6.977213 AGTACTAAATTTTTGTGCGTCCATT 58.023 32.000 0.00 0.00 0.00 3.16
258 259 6.569179 AGTACTAAATTTTTGTGCGTCCAT 57.431 33.333 0.00 0.00 0.00 3.41
259 260 6.038382 TGAAGTACTAAATTTTTGTGCGTCCA 59.962 34.615 17.99 10.20 0.00 4.02
260 261 6.432107 TGAAGTACTAAATTTTTGTGCGTCC 58.568 36.000 17.99 8.53 0.00 4.79
261 262 8.015658 AGATGAAGTACTAAATTTTTGTGCGTC 58.984 33.333 15.60 15.60 0.00 5.19
262 263 7.871853 AGATGAAGTACTAAATTTTTGTGCGT 58.128 30.769 0.00 3.75 0.00 5.24
263 264 9.988350 ATAGATGAAGTACTAAATTTTTGTGCG 57.012 29.630 0.00 0.00 0.00 5.34
289 290 9.819267 CCAAGGTGGTACTAAATTTTTGTTTTA 57.181 29.630 0.00 0.00 31.35 1.52
290 291 8.541234 TCCAAGGTGGTACTAAATTTTTGTTTT 58.459 29.630 0.00 0.00 39.03 2.43
291 292 8.080363 TCCAAGGTGGTACTAAATTTTTGTTT 57.920 30.769 0.00 0.00 39.03 2.83
292 293 7.663043 TCCAAGGTGGTACTAAATTTTTGTT 57.337 32.000 0.00 0.00 39.03 2.83
293 294 7.849322 ATCCAAGGTGGTACTAAATTTTTGT 57.151 32.000 0.00 2.00 39.03 2.83
294 295 9.238368 TCTATCCAAGGTGGTACTAAATTTTTG 57.762 33.333 0.00 0.00 39.03 2.44
295 296 9.816787 TTCTATCCAAGGTGGTACTAAATTTTT 57.183 29.630 0.00 0.00 39.03 1.94
296 297 9.816787 TTTCTATCCAAGGTGGTACTAAATTTT 57.183 29.630 0.00 0.00 39.03 1.82
297 298 9.816787 TTTTCTATCCAAGGTGGTACTAAATTT 57.183 29.630 0.00 0.00 39.03 1.82
298 299 9.816787 TTTTTCTATCCAAGGTGGTACTAAATT 57.183 29.630 0.00 0.00 39.03 1.82
324 325 5.873179 TCTTCCGTTTAGCATCGATTTTT 57.127 34.783 0.00 0.00 0.00 1.94
325 326 5.873179 TTCTTCCGTTTAGCATCGATTTT 57.127 34.783 0.00 0.00 0.00 1.82
326 327 5.873179 TTTCTTCCGTTTAGCATCGATTT 57.127 34.783 0.00 0.00 0.00 2.17
327 328 5.873179 TTTTCTTCCGTTTAGCATCGATT 57.127 34.783 0.00 0.00 0.00 3.34
328 329 5.873179 TTTTTCTTCCGTTTAGCATCGAT 57.127 34.783 0.00 0.00 0.00 3.59
398 399 8.637986 GCATGCCTAGTCTTTATATCTATAGCT 58.362 37.037 6.36 0.00 0.00 3.32
399 400 8.637986 AGCATGCCTAGTCTTTATATCTATAGC 58.362 37.037 15.66 0.00 0.00 2.97
402 403 9.883142 GAAAGCATGCCTAGTCTTTATATCTAT 57.117 33.333 15.66 0.00 0.00 1.98
403 404 9.094578 AGAAAGCATGCCTAGTCTTTATATCTA 57.905 33.333 15.66 0.00 0.00 1.98
430 431 2.039879 AGGCCGGTGATGTTTCTACTTT 59.960 45.455 1.90 0.00 0.00 2.66
432 433 1.066143 CAGGCCGGTGATGTTTCTACT 60.066 52.381 1.90 0.00 0.00 2.57
433 434 1.369625 CAGGCCGGTGATGTTTCTAC 58.630 55.000 1.90 0.00 0.00 2.59
482 483 2.613506 GGTTTCGAACCCACGGCTG 61.614 63.158 6.89 0.00 46.12 4.85
495 496 2.438951 TACGGCGTGGGTGAGGTTTC 62.439 60.000 24.86 0.00 0.00 2.78
496 497 2.444700 CTACGGCGTGGGTGAGGTTT 62.445 60.000 24.86 0.00 0.00 3.27
501 502 2.386064 AAAAGCTACGGCGTGGGTGA 62.386 55.000 27.92 3.82 44.37 4.02
508 509 6.626199 AAATAAAATGAAAAAGCTACGGCG 57.374 33.333 4.80 4.80 44.37 6.46
512 513 9.938280 ACCCCTAAAATAAAATGAAAAAGCTAC 57.062 29.630 0.00 0.00 0.00 3.58
529 530 6.239396 TCATTCGTGTATTGAACCCCTAAAA 58.761 36.000 0.00 0.00 0.00 1.52
592 594 9.956720 CAAAGTTGAGACACTTATTTTTGAGAT 57.043 29.630 0.00 0.00 35.87 2.75
593 595 8.956426 ACAAAGTTGAGACACTTATTTTTGAGA 58.044 29.630 0.00 0.00 35.87 3.27
595 597 9.997482 GTACAAAGTTGAGACACTTATTTTTGA 57.003 29.630 0.00 0.00 35.87 2.69
615 617 3.371166 GCTAGGGCCCATGTTAGTACAAA 60.371 47.826 27.56 0.00 37.91 2.83
618 620 2.545537 GCTAGGGCCCATGTTAGTAC 57.454 55.000 27.56 1.04 0.00 2.73
658 736 7.941053 TTACCTACCTGGACATATTTATGGT 57.059 36.000 0.00 0.00 37.35 3.55
662 740 9.621629 CACATTTTACCTACCTGGACATATTTA 57.378 33.333 0.00 0.00 39.71 1.40
671 893 3.950397 TGAGCACATTTTACCTACCTGG 58.050 45.455 0.00 0.00 42.93 4.45
689 911 4.067896 ACTTGCAGAGGTGTGTAAATGAG 58.932 43.478 0.00 0.00 0.00 2.90
690 912 4.085357 ACTTGCAGAGGTGTGTAAATGA 57.915 40.909 0.00 0.00 0.00 2.57
697 921 2.289002 GAGACAAACTTGCAGAGGTGTG 59.711 50.000 10.15 8.04 30.51 3.82
700 924 1.202818 GGGAGACAAACTTGCAGAGGT 60.203 52.381 0.00 0.00 0.00 3.85
701 925 1.072965 AGGGAGACAAACTTGCAGAGG 59.927 52.381 0.00 0.00 0.00 3.69
702 926 2.557920 AGGGAGACAAACTTGCAGAG 57.442 50.000 0.00 0.00 0.00 3.35
703 927 3.214328 GAAAGGGAGACAAACTTGCAGA 58.786 45.455 0.00 0.00 0.00 4.26
704 928 2.951642 TGAAAGGGAGACAAACTTGCAG 59.048 45.455 0.00 0.00 0.00 4.41
715 939 1.724545 TCGGGAGTTTGAAAGGGAGA 58.275 50.000 0.00 0.00 0.00 3.71
716 940 2.561478 TTCGGGAGTTTGAAAGGGAG 57.439 50.000 0.00 0.00 0.00 4.30
717 941 4.644163 TTATTCGGGAGTTTGAAAGGGA 57.356 40.909 0.00 0.00 0.00 4.20
721 1103 7.576098 GCCAGTATTTTATTCGGGAGTTTGAAA 60.576 37.037 0.00 0.00 0.00 2.69
730 1112 3.199677 TCGTGCCAGTATTTTATTCGGG 58.800 45.455 0.00 0.00 0.00 5.14
808 1190 3.407083 TGGCTGCGCTGGGGAATA 61.407 61.111 16.47 0.00 0.00 1.75
922 1320 3.513515 TGAACTGTGAGCTTTTGGGTTTT 59.486 39.130 0.00 0.00 0.00 2.43
923 1321 3.096092 TGAACTGTGAGCTTTTGGGTTT 58.904 40.909 0.00 0.00 0.00 3.27
924 1322 2.733956 TGAACTGTGAGCTTTTGGGTT 58.266 42.857 0.00 0.00 0.00 4.11
936 1343 1.594518 CGTGCTTCGGTTTGAACTGTG 60.595 52.381 2.88 0.00 36.65 3.66
937 1344 0.655733 CGTGCTTCGGTTTGAACTGT 59.344 50.000 2.88 0.00 36.65 3.55
978 1693 2.222027 GGGCTGTGGGATTCGATTTAG 58.778 52.381 0.00 0.00 0.00 1.85
979 1694 1.562008 TGGGCTGTGGGATTCGATTTA 59.438 47.619 0.00 0.00 0.00 1.40
980 1695 0.331278 TGGGCTGTGGGATTCGATTT 59.669 50.000 0.00 0.00 0.00 2.17
1107 1834 0.105039 GGATCTCACATGGTCCGGTC 59.895 60.000 0.00 0.00 0.00 4.79
1108 1835 1.338136 GGGATCTCACATGGTCCGGT 61.338 60.000 0.00 0.00 0.00 5.28
1125 1861 2.117423 AGCCCCGAAAAACCAGGG 59.883 61.111 0.00 0.00 44.67 4.45
1155 1895 1.147153 CCAAGGTGCCCTAGCTAGC 59.853 63.158 15.74 6.62 40.80 3.42
1167 1907 3.767630 AACTCGCCGCAACCAAGGT 62.768 57.895 0.00 0.00 0.00 3.50
1187 1927 0.991920 ACCCACAACCGATCAGGAAT 59.008 50.000 10.05 0.00 45.00 3.01
1238 1978 4.063967 ACATCCGCCAGCGACGAA 62.064 61.111 14.67 0.00 42.83 3.85
1258 1998 2.738521 CCGACACCTGCTTCACCG 60.739 66.667 0.00 0.00 0.00 4.94
1326 2066 4.966787 GGCAACCTCCACGGCCAA 62.967 66.667 2.24 0.00 45.70 4.52
1343 2083 4.803426 GCAGCGACCACCTCCTCG 62.803 72.222 0.00 0.00 0.00 4.63
1392 2132 3.369756 ACAACGACGCAATGTAGGTTATG 59.630 43.478 0.00 0.00 0.00 1.90
1435 2175 4.584743 AGTACATAACATGAGCATCCGAGA 59.415 41.667 0.00 0.00 0.00 4.04
1458 2198 2.860971 GCGCACACTCACACAAGTACTA 60.861 50.000 0.30 0.00 0.00 1.82
1490 2238 5.738909 CAATTCTCTCCTAACCAGTCATGT 58.261 41.667 0.00 0.00 0.00 3.21
1531 2279 1.200948 GGTGCTTCTCTGTGGCATTTC 59.799 52.381 0.00 0.00 38.27 2.17
1633 2381 3.019564 GCTCAACTCCCTGCACATAAAT 58.980 45.455 0.00 0.00 0.00 1.40
1637 2385 1.376424 CGCTCAACTCCCTGCACAT 60.376 57.895 0.00 0.00 0.00 3.21
1689 2437 2.052690 ACCTCCTCCACGACATCCG 61.053 63.158 0.00 0.00 45.44 4.18
1695 2443 1.906824 GTGACCACCTCCTCCACGA 60.907 63.158 0.00 0.00 0.00 4.35
1718 2466 2.355193 GCTCTCTTCCAGGGCTCGT 61.355 63.158 0.00 0.00 46.57 4.18
1864 2612 0.108615 TCTCCAGCAGTAAAGAGCGC 60.109 55.000 0.00 0.00 35.48 5.92
1929 2677 0.744414 CAGGCGACGAATGGATGGTT 60.744 55.000 0.00 0.00 0.00 3.67
1941 2689 1.495951 CAACGTAAAGGCAGGCGAC 59.504 57.895 0.00 0.00 0.00 5.19
1988 2736 1.472480 ACACCACAGCAAACACAAGTC 59.528 47.619 0.00 0.00 0.00 3.01
2022 2770 2.360165 ACTCAACTGCCTGCAAAGAAAG 59.640 45.455 0.00 0.00 0.00 2.62
2136 2884 3.629398 CCATATCAGGAGTTGAAGCAACC 59.371 47.826 6.67 0.00 44.49 3.77
2230 2978 3.873361 ACACATCATGAAAGACGGCATAG 59.127 43.478 0.00 0.00 0.00 2.23
2351 3099 0.963225 GCTCCGAGGGTATCTCTTCC 59.037 60.000 0.00 0.00 40.30 3.46
2462 3210 4.629092 ACTCATCTCCATTGTCATCATCG 58.371 43.478 0.00 0.00 0.00 3.84
2719 3467 3.932710 GCTTCTATCACGGTGATTGTTCA 59.067 43.478 26.94 9.37 38.26 3.18
2874 3622 4.229876 GTCTGATTTGCAACCTTACAAGC 58.770 43.478 0.00 0.00 0.00 4.01
2961 3709 8.506168 ACTGTTGAGTTGTCTGAAGAAATTAA 57.494 30.769 0.00 0.00 0.00 1.40
3147 3895 1.897802 CCAGTAACTTCCCACCGTACT 59.102 52.381 0.00 0.00 0.00 2.73
3227 3975 3.681593 TTGCTTGTTGAATTGGGGATG 57.318 42.857 0.00 0.00 0.00 3.51
3266 4014 2.607635 ACATGATTGTATTCGGCGTGTC 59.392 45.455 6.85 0.00 33.16 3.67
3278 4026 8.089597 TCACAATTGCAAGAAATACATGATTGT 58.910 29.630 4.94 3.06 39.98 2.71
3305 4053 8.922676 CAAAGCATTAACGGATAAGTATATCGT 58.077 33.333 0.00 0.00 39.10 3.73
3306 4054 8.922676 ACAAAGCATTAACGGATAAGTATATCG 58.077 33.333 0.00 0.00 39.10 2.92
3327 4075 1.610522 CCCTTCTGTCCTGCAACAAAG 59.389 52.381 0.00 0.00 0.00 2.77
3495 4258 6.698380 TCAGCTCTAAATCTACGGACTTTTT 58.302 36.000 0.00 0.00 0.00 1.94
3496 4259 6.282199 TCAGCTCTAAATCTACGGACTTTT 57.718 37.500 0.00 0.00 0.00 2.27
3497 4260 5.916661 TCAGCTCTAAATCTACGGACTTT 57.083 39.130 0.00 0.00 0.00 2.66
3498 4261 5.916661 TTCAGCTCTAAATCTACGGACTT 57.083 39.130 0.00 0.00 0.00 3.01
3499 4262 5.010213 GGATTCAGCTCTAAATCTACGGACT 59.990 44.000 11.01 0.00 33.36 3.85
3500 4263 5.221263 TGGATTCAGCTCTAAATCTACGGAC 60.221 44.000 11.01 0.00 33.36 4.79
3501 4264 4.893524 TGGATTCAGCTCTAAATCTACGGA 59.106 41.667 11.01 0.00 33.36 4.69
3502 4265 5.201713 TGGATTCAGCTCTAAATCTACGG 57.798 43.478 11.01 0.00 33.36 4.02
3503 4266 5.837437 ACTGGATTCAGCTCTAAATCTACG 58.163 41.667 0.00 0.00 44.59 3.51
3504 4267 7.766278 TCAAACTGGATTCAGCTCTAAATCTAC 59.234 37.037 0.00 0.35 44.59 2.59
3505 4268 7.851228 TCAAACTGGATTCAGCTCTAAATCTA 58.149 34.615 0.00 6.12 44.59 1.98
3506 4269 6.715280 TCAAACTGGATTCAGCTCTAAATCT 58.285 36.000 0.00 0.00 44.59 2.40
3507 4270 6.992063 TCAAACTGGATTCAGCTCTAAATC 57.008 37.500 0.00 4.97 44.59 2.17
3513 4276 8.031277 ACATAAAATTCAAACTGGATTCAGCTC 58.969 33.333 0.00 0.00 44.59 4.09
3515 4278 9.807649 ATACATAAAATTCAAACTGGATTCAGC 57.192 29.630 0.00 0.00 44.59 4.26
3650 4443 6.438425 AGAAAAGATGAGCAACCAATAACCAT 59.562 34.615 0.00 0.00 0.00 3.55
3659 4452 3.057245 GGGACAAGAAAAGATGAGCAACC 60.057 47.826 0.00 0.00 0.00 3.77
3727 4520 2.283173 CAGAACCCACAAGGCCCC 60.283 66.667 0.00 0.00 40.58 5.80
3793 4586 4.053295 TGTGCTTTACTCAACTTACGGTC 58.947 43.478 0.00 0.00 0.00 4.79
3875 4686 4.082787 CGTTTTTACACTACGGAGGGAGTA 60.083 45.833 2.30 0.00 0.00 2.59
3876 4687 3.305608 CGTTTTTACACTACGGAGGGAGT 60.306 47.826 2.30 0.00 0.00 3.85
3877 4688 3.248266 CGTTTTTACACTACGGAGGGAG 58.752 50.000 2.30 0.00 0.00 4.30
3878 4689 2.610232 GCGTTTTTACACTACGGAGGGA 60.610 50.000 2.30 0.00 35.91 4.20
3879 4690 1.728425 GCGTTTTTACACTACGGAGGG 59.272 52.381 0.00 0.00 35.91 4.30
3880 4691 2.665052 GAGCGTTTTTACACTACGGAGG 59.335 50.000 0.00 0.00 35.91 4.30
3881 4692 3.572584 AGAGCGTTTTTACACTACGGAG 58.427 45.455 0.00 0.00 35.91 4.63
3882 4693 3.648339 AGAGCGTTTTTACACTACGGA 57.352 42.857 0.00 0.00 35.91 4.69
3883 4694 7.689953 ATATAAGAGCGTTTTTACACTACGG 57.310 36.000 0.00 0.00 35.91 4.02
3887 4698 9.052759 CCCATAATATAAGAGCGTTTTTACACT 57.947 33.333 0.00 0.00 0.00 3.55
3888 4699 9.048446 TCCCATAATATAAGAGCGTTTTTACAC 57.952 33.333 0.00 0.00 0.00 2.90
3889 4700 9.048446 GTCCCATAATATAAGAGCGTTTTTACA 57.952 33.333 0.00 0.00 0.00 2.41
3890 4701 8.219105 CGTCCCATAATATAAGAGCGTTTTTAC 58.781 37.037 0.00 0.00 0.00 2.01
3891 4702 7.385752 CCGTCCCATAATATAAGAGCGTTTTTA 59.614 37.037 0.00 0.00 0.00 1.52
3892 4703 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3893 4704 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3894 4705 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3895 4706 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3896 4707 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3897 4708 4.158025 ACTCCGTCCCATAATATAAGAGCG 59.842 45.833 0.00 0.00 0.00 5.03
3898 4709 5.185249 TCACTCCGTCCCATAATATAAGAGC 59.815 44.000 0.00 0.00 0.00 4.09
3899 4710 6.434652 ACTCACTCCGTCCCATAATATAAGAG 59.565 42.308 0.00 0.00 0.00 2.85
3900 4711 6.312529 ACTCACTCCGTCCCATAATATAAGA 58.687 40.000 0.00 0.00 0.00 2.10
3901 4712 6.591750 ACTCACTCCGTCCCATAATATAAG 57.408 41.667 0.00 0.00 0.00 1.73
3902 4713 7.464273 TCTACTCACTCCGTCCCATAATATAA 58.536 38.462 0.00 0.00 0.00 0.98
3903 4714 7.024345 TCTACTCACTCCGTCCCATAATATA 57.976 40.000 0.00 0.00 0.00 0.86
3904 4715 5.888901 TCTACTCACTCCGTCCCATAATAT 58.111 41.667 0.00 0.00 0.00 1.28
3905 4716 5.314718 TCTACTCACTCCGTCCCATAATA 57.685 43.478 0.00 0.00 0.00 0.98
3906 4717 4.180377 TCTACTCACTCCGTCCCATAAT 57.820 45.455 0.00 0.00 0.00 1.28
3907 4718 3.657398 TCTACTCACTCCGTCCCATAA 57.343 47.619 0.00 0.00 0.00 1.90
3908 4719 3.487372 CATCTACTCACTCCGTCCCATA 58.513 50.000 0.00 0.00 0.00 2.74
3909 4720 2.311463 CATCTACTCACTCCGTCCCAT 58.689 52.381 0.00 0.00 0.00 4.00
3910 4721 1.763968 CATCTACTCACTCCGTCCCA 58.236 55.000 0.00 0.00 0.00 4.37
3911 4722 0.386113 GCATCTACTCACTCCGTCCC 59.614 60.000 0.00 0.00 0.00 4.46
3912 4723 1.394618 AGCATCTACTCACTCCGTCC 58.605 55.000 0.00 0.00 0.00 4.79
3913 4724 3.628487 AGTAAGCATCTACTCACTCCGTC 59.372 47.826 0.00 0.00 0.00 4.79
3914 4725 3.622630 AGTAAGCATCTACTCACTCCGT 58.377 45.455 0.00 0.00 0.00 4.69
3915 4726 3.303461 CGAGTAAGCATCTACTCACTCCG 60.303 52.174 16.32 4.03 45.49 4.63
3916 4727 3.003897 CCGAGTAAGCATCTACTCACTCC 59.996 52.174 16.32 0.00 45.49 3.85
3917 4728 3.628487 ACCGAGTAAGCATCTACTCACTC 59.372 47.826 16.32 0.78 45.49 3.51
3918 4729 3.622630 ACCGAGTAAGCATCTACTCACT 58.377 45.455 16.32 3.00 45.49 3.41
3919 4730 3.628487 AGACCGAGTAAGCATCTACTCAC 59.372 47.826 16.32 9.55 45.49 3.51
3920 4731 3.878103 GAGACCGAGTAAGCATCTACTCA 59.122 47.826 16.32 0.00 45.49 3.41
3921 4732 3.878103 TGAGACCGAGTAAGCATCTACTC 59.122 47.826 9.47 9.47 42.94 2.59
3922 4733 3.628487 GTGAGACCGAGTAAGCATCTACT 59.372 47.826 0.00 0.00 34.76 2.57
3923 4734 3.377485 TGTGAGACCGAGTAAGCATCTAC 59.623 47.826 0.00 0.00 0.00 2.59
4126 4937 3.703286 ATTGCATCATGTGAACCATCG 57.297 42.857 0.00 0.00 0.00 3.84
4151 4962 0.753262 ACCCCCGAGAAGAATCATCG 59.247 55.000 0.00 0.00 36.24 3.84
4155 4966 1.472878 GCAAAACCCCCGAGAAGAATC 59.527 52.381 0.00 0.00 0.00 2.52
4251 5258 7.335627 TCGGTTTTCTCTACATGGATAACATT 58.664 34.615 0.00 0.00 37.84 2.71
4277 5284 1.214589 GTCCATGTACCACGTCGCT 59.785 57.895 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.