Multiple sequence alignment - TraesCS2D01G381400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G381400 chr2D 100.000 2995 0 0 1 2995 485492077 485489083 0.000000e+00 5531.0
1 TraesCS2D01G381400 chr2D 89.610 77 8 0 2 78 485578251 485578175 6.830000e-17 99.0
2 TraesCS2D01G381400 chr2D 88.158 76 9 0 2 77 485643760 485643685 1.140000e-14 91.6
3 TraesCS2D01G381400 chr2A 93.480 2178 57 18 783 2922 630093122 630090992 0.000000e+00 3157.0
4 TraesCS2D01G381400 chr2A 85.451 488 58 9 125 606 630096727 630096247 2.070000e-136 496.0
5 TraesCS2D01G381400 chr2A 96.000 75 1 2 2922 2995 630090926 630090853 1.460000e-23 121.0
6 TraesCS2D01G381400 chr2A 95.918 49 2 0 638 686 630093917 630093869 2.470000e-11 80.5
7 TraesCS2D01G381400 chr2B 91.079 1390 75 22 777 2136 570094380 570093010 0.000000e+00 1834.0
8 TraesCS2D01G381400 chr2B 90.701 699 45 10 2156 2843 570091004 570090315 0.000000e+00 913.0
9 TraesCS2D01G381400 chr2B 92.247 503 32 5 103 603 570139438 570138941 0.000000e+00 706.0
10 TraesCS2D01G381400 chr2B 91.451 503 32 6 103 603 570117904 570117411 0.000000e+00 680.0
11 TraesCS2D01G381400 chr3B 90.265 113 4 5 2832 2940 325848093 325848202 1.120000e-29 141.0
12 TraesCS2D01G381400 chr3B 85.149 101 11 3 2841 2940 325848202 325848105 1.900000e-17 100.0
13 TraesCS2D01G381400 chr1D 87.931 116 5 7 2841 2948 23007882 23007768 8.710000e-26 128.0
14 TraesCS2D01G381400 chr6A 87.500 112 7 4 2838 2942 83356592 83356703 4.050000e-24 122.0
15 TraesCS2D01G381400 chr1A 93.333 75 4 1 2828 2901 441240928 441240854 3.160000e-20 110.0
16 TraesCS2D01G381400 chr3A 85.437 103 11 3 2842 2943 128148966 128149065 1.470000e-18 104.0
17 TraesCS2D01G381400 chr3A 86.000 100 10 3 2841 2939 128149062 128148966 1.470000e-18 104.0
18 TraesCS2D01G381400 chr6B 83.962 106 12 4 2841 2944 488218641 488218743 2.460000e-16 97.1
19 TraesCS2D01G381400 chr6D 85.915 71 8 2 13 83 262019444 262019512 1.150000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G381400 chr2D 485489083 485492077 2994 True 5531.000 5531 100.00000 1 2995 1 chr2D.!!$R1 2994
1 TraesCS2D01G381400 chr2A 630090853 630096727 5874 True 963.625 3157 92.71225 125 2995 4 chr2A.!!$R1 2870
2 TraesCS2D01G381400 chr2B 570090315 570094380 4065 True 1373.500 1834 90.89000 777 2843 2 chr2B.!!$R3 2066

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.247735 TTGTTGTGTACGTGCGTTGC 60.248 50.0 1.66 0.0 0.00 4.17 F
104 105 0.302288 GTACGTGCGTTGCTGAACAA 59.698 50.0 1.66 0.0 35.33 2.83 F
107 108 0.522286 CGTGCGTTGCTGAACAAACA 60.522 50.0 0.00 0.0 40.82 2.83 F
1286 4290 0.106369 CCCATGTGCCAGGTGATGAT 60.106 55.0 0.00 0.0 0.00 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1268 4272 1.029681 CATCATCACCTGGCACATGG 58.970 55.000 0.00 0.0 38.20 3.66 R
1286 4290 2.604686 AGGACGGCCTTGCTCTCA 60.605 61.111 2.12 0.0 43.90 3.27 R
1488 4499 6.667558 AGGTAAAGCTAAACACTAGTCAGT 57.332 37.500 0.00 0.0 34.42 3.41 R
2926 7972 1.004277 TGCAATGTACTCCCCTGTTCC 59.996 52.381 0.00 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.002797 GGCACAACCCCACAGATC 57.997 61.111 0.00 0.00 0.00 2.75
19 20 2.040544 GGCACAACCCCACAGATCG 61.041 63.158 0.00 0.00 0.00 3.69
20 21 2.690778 GCACAACCCCACAGATCGC 61.691 63.158 0.00 0.00 0.00 4.58
21 22 1.302431 CACAACCCCACAGATCGCA 60.302 57.895 0.00 0.00 0.00 5.10
22 23 0.677731 CACAACCCCACAGATCGCAT 60.678 55.000 0.00 0.00 0.00 4.73
23 24 0.908910 ACAACCCCACAGATCGCATA 59.091 50.000 0.00 0.00 0.00 3.14
24 25 1.299541 CAACCCCACAGATCGCATAC 58.700 55.000 0.00 0.00 0.00 2.39
25 26 0.908910 AACCCCACAGATCGCATACA 59.091 50.000 0.00 0.00 0.00 2.29
26 27 1.131638 ACCCCACAGATCGCATACAT 58.868 50.000 0.00 0.00 0.00 2.29
27 28 1.202687 ACCCCACAGATCGCATACATG 60.203 52.381 0.00 0.00 0.00 3.21
28 29 1.516161 CCCACAGATCGCATACATGG 58.484 55.000 0.00 0.00 0.00 3.66
29 30 1.202687 CCCACAGATCGCATACATGGT 60.203 52.381 0.00 0.00 0.00 3.55
30 31 2.564771 CCACAGATCGCATACATGGTT 58.435 47.619 0.00 0.00 0.00 3.67
31 32 3.494223 CCCACAGATCGCATACATGGTTA 60.494 47.826 0.00 0.00 0.00 2.85
32 33 3.742882 CCACAGATCGCATACATGGTTAG 59.257 47.826 0.00 0.00 0.00 2.34
33 34 3.742882 CACAGATCGCATACATGGTTAGG 59.257 47.826 0.00 0.00 0.00 2.69
34 35 3.641436 ACAGATCGCATACATGGTTAGGA 59.359 43.478 0.00 0.00 0.00 2.94
35 36 4.284490 ACAGATCGCATACATGGTTAGGAT 59.716 41.667 0.00 0.00 0.00 3.24
36 37 5.221722 ACAGATCGCATACATGGTTAGGATT 60.222 40.000 0.00 0.00 0.00 3.01
37 38 6.014584 ACAGATCGCATACATGGTTAGGATTA 60.015 38.462 0.00 0.00 0.00 1.75
38 39 6.311445 CAGATCGCATACATGGTTAGGATTAC 59.689 42.308 0.00 0.00 0.00 1.89
39 40 5.538849 TCGCATACATGGTTAGGATTACA 57.461 39.130 0.00 0.00 0.00 2.41
40 41 5.919755 TCGCATACATGGTTAGGATTACAA 58.080 37.500 0.00 0.00 0.00 2.41
41 42 5.756347 TCGCATACATGGTTAGGATTACAAC 59.244 40.000 0.00 0.00 0.00 3.32
42 43 5.758296 CGCATACATGGTTAGGATTACAACT 59.242 40.000 0.00 0.00 0.00 3.16
43 44 6.260050 CGCATACATGGTTAGGATTACAACTT 59.740 38.462 0.00 0.00 0.00 2.66
44 45 7.417612 GCATACATGGTTAGGATTACAACTTG 58.582 38.462 0.00 0.00 0.00 3.16
45 46 7.067008 GCATACATGGTTAGGATTACAACTTGT 59.933 37.037 0.00 0.00 0.00 3.16
46 47 6.817765 ACATGGTTAGGATTACAACTTGTG 57.182 37.500 4.57 0.00 0.00 3.33
47 48 6.303839 ACATGGTTAGGATTACAACTTGTGT 58.696 36.000 4.57 0.00 44.82 3.72
48 49 6.206634 ACATGGTTAGGATTACAACTTGTGTG 59.793 38.462 4.57 0.00 41.89 3.82
49 50 4.517453 TGGTTAGGATTACAACTTGTGTGC 59.483 41.667 4.57 0.00 41.89 4.57
50 51 4.082949 GGTTAGGATTACAACTTGTGTGCC 60.083 45.833 4.57 3.21 41.89 5.01
51 52 3.222173 AGGATTACAACTTGTGTGCCA 57.778 42.857 4.57 0.00 41.89 4.92
52 53 3.561143 AGGATTACAACTTGTGTGCCAA 58.439 40.909 4.57 0.00 41.89 4.52
58 59 4.085876 CTTGTGTGCCAAGGGAGG 57.914 61.111 0.00 0.00 45.70 4.30
59 60 1.604593 CTTGTGTGCCAAGGGAGGG 60.605 63.158 0.00 0.00 45.70 4.30
60 61 3.145473 TTGTGTGCCAAGGGAGGGG 62.145 63.158 0.00 0.00 0.00 4.79
61 62 4.366684 GTGTGCCAAGGGAGGGGG 62.367 72.222 0.00 0.00 0.00 5.40
62 63 4.608514 TGTGCCAAGGGAGGGGGA 62.609 66.667 0.00 0.00 0.00 4.81
63 64 3.732849 GTGCCAAGGGAGGGGGAG 61.733 72.222 0.00 0.00 0.00 4.30
64 65 3.953652 TGCCAAGGGAGGGGGAGA 61.954 66.667 0.00 0.00 0.00 3.71
65 66 3.093172 GCCAAGGGAGGGGGAGAG 61.093 72.222 0.00 0.00 0.00 3.20
66 67 2.787866 CCAAGGGAGGGGGAGAGA 59.212 66.667 0.00 0.00 0.00 3.10
67 68 1.383803 CCAAGGGAGGGGGAGAGAG 60.384 68.421 0.00 0.00 0.00 3.20
68 69 1.706575 CAAGGGAGGGGGAGAGAGA 59.293 63.158 0.00 0.00 0.00 3.10
69 70 0.398381 CAAGGGAGGGGGAGAGAGAG 60.398 65.000 0.00 0.00 0.00 3.20
70 71 0.556380 AAGGGAGGGGGAGAGAGAGA 60.556 60.000 0.00 0.00 0.00 3.10
71 72 0.998945 AGGGAGGGGGAGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
72 73 0.996762 GGGAGGGGGAGAGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
73 74 0.478507 GGAGGGGGAGAGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
74 75 1.518367 GAGGGGGAGAGAGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
75 76 1.421646 GAGGGGGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
76 77 1.010793 AGGGGGAGAGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
77 78 1.421646 GGGGGAGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
78 79 2.127708 GGGGAGAGAGAGAGAGAGAGT 58.872 57.143 0.00 0.00 0.00 3.24
79 80 2.509964 GGGGAGAGAGAGAGAGAGAGTT 59.490 54.545 0.00 0.00 0.00 3.01
80 81 3.545703 GGGAGAGAGAGAGAGAGAGTTG 58.454 54.545 0.00 0.00 0.00 3.16
81 82 3.054361 GGGAGAGAGAGAGAGAGAGTTGT 60.054 52.174 0.00 0.00 0.00 3.32
82 83 4.567747 GGGAGAGAGAGAGAGAGAGTTGTT 60.568 50.000 0.00 0.00 0.00 2.83
83 84 4.396166 GGAGAGAGAGAGAGAGAGTTGTTG 59.604 50.000 0.00 0.00 0.00 3.33
84 85 4.985538 AGAGAGAGAGAGAGAGTTGTTGT 58.014 43.478 0.00 0.00 0.00 3.32
85 86 4.761739 AGAGAGAGAGAGAGAGTTGTTGTG 59.238 45.833 0.00 0.00 0.00 3.33
86 87 4.469657 AGAGAGAGAGAGAGTTGTTGTGT 58.530 43.478 0.00 0.00 0.00 3.72
87 88 5.626142 AGAGAGAGAGAGAGTTGTTGTGTA 58.374 41.667 0.00 0.00 0.00 2.90
88 89 5.472137 AGAGAGAGAGAGAGTTGTTGTGTAC 59.528 44.000 0.00 0.00 0.00 2.90
89 90 4.214545 AGAGAGAGAGAGTTGTTGTGTACG 59.785 45.833 0.00 0.00 0.00 3.67
90 91 3.884091 AGAGAGAGAGTTGTTGTGTACGT 59.116 43.478 0.00 0.00 0.00 3.57
91 92 3.966154 AGAGAGAGTTGTTGTGTACGTG 58.034 45.455 0.00 0.00 0.00 4.49
92 93 2.470821 AGAGAGTTGTTGTGTACGTGC 58.529 47.619 0.00 0.00 0.00 5.34
93 94 1.189446 GAGAGTTGTTGTGTACGTGCG 59.811 52.381 0.00 0.00 0.00 5.34
94 95 0.925466 GAGTTGTTGTGTACGTGCGT 59.075 50.000 0.00 2.05 0.00 5.24
95 96 1.325338 GAGTTGTTGTGTACGTGCGTT 59.675 47.619 1.66 0.00 0.00 4.84
96 97 1.061421 AGTTGTTGTGTACGTGCGTTG 59.939 47.619 1.66 0.00 0.00 4.10
97 98 0.247735 TTGTTGTGTACGTGCGTTGC 60.248 50.000 1.66 0.00 0.00 4.17
98 99 1.084935 TGTTGTGTACGTGCGTTGCT 61.085 50.000 1.66 0.00 0.00 3.91
99 100 0.653323 GTTGTGTACGTGCGTTGCTG 60.653 55.000 1.66 0.00 0.00 4.41
100 101 0.806492 TTGTGTACGTGCGTTGCTGA 60.806 50.000 1.66 0.00 0.00 4.26
101 102 0.806492 TGTGTACGTGCGTTGCTGAA 60.806 50.000 1.66 0.00 0.00 3.02
102 103 0.382636 GTGTACGTGCGTTGCTGAAC 60.383 55.000 1.66 0.00 0.00 3.18
103 104 0.806492 TGTACGTGCGTTGCTGAACA 60.806 50.000 1.66 0.00 31.78 3.18
104 105 0.302288 GTACGTGCGTTGCTGAACAA 59.698 50.000 1.66 0.00 35.33 2.83
105 106 1.007580 TACGTGCGTTGCTGAACAAA 58.992 45.000 1.66 0.00 40.82 2.83
106 107 0.522495 ACGTGCGTTGCTGAACAAAC 60.522 50.000 0.00 0.00 40.82 2.93
107 108 0.522286 CGTGCGTTGCTGAACAAACA 60.522 50.000 0.00 0.00 40.82 2.83
108 109 0.913876 GTGCGTTGCTGAACAAACAC 59.086 50.000 0.00 0.00 40.82 3.32
109 110 0.523519 TGCGTTGCTGAACAAACACA 59.476 45.000 0.00 0.00 40.82 3.72
110 111 1.068264 TGCGTTGCTGAACAAACACAA 60.068 42.857 0.00 0.00 40.82 3.33
111 112 1.320259 GCGTTGCTGAACAAACACAAC 59.680 47.619 0.00 0.00 40.82 3.32
112 113 2.590073 CGTTGCTGAACAAACACAACA 58.410 42.857 0.00 0.00 40.82 3.33
113 114 2.983136 CGTTGCTGAACAAACACAACAA 59.017 40.909 0.00 0.00 40.82 2.83
114 115 3.059306 CGTTGCTGAACAAACACAACAAG 59.941 43.478 0.00 0.00 40.82 3.16
115 116 4.233789 GTTGCTGAACAAACACAACAAGA 58.766 39.130 0.00 0.00 40.82 3.02
116 117 4.095410 TGCTGAACAAACACAACAAGAG 57.905 40.909 0.00 0.00 0.00 2.85
117 118 3.755905 TGCTGAACAAACACAACAAGAGA 59.244 39.130 0.00 0.00 0.00 3.10
118 119 4.398988 TGCTGAACAAACACAACAAGAGAT 59.601 37.500 0.00 0.00 0.00 2.75
119 120 4.736793 GCTGAACAAACACAACAAGAGATG 59.263 41.667 0.00 0.00 0.00 2.90
120 121 5.677091 GCTGAACAAACACAACAAGAGATGT 60.677 40.000 0.00 0.00 46.82 3.06
121 122 6.458206 GCTGAACAAACACAACAAGAGATGTA 60.458 38.462 0.00 0.00 42.99 2.29
122 123 7.384439 TGAACAAACACAACAAGAGATGTAA 57.616 32.000 0.00 0.00 42.99 2.41
123 124 7.821652 TGAACAAACACAACAAGAGATGTAAA 58.178 30.769 0.00 0.00 42.99 2.01
124 125 8.465999 TGAACAAACACAACAAGAGATGTAAAT 58.534 29.630 0.00 0.00 42.99 1.40
125 126 8.633075 AACAAACACAACAAGAGATGTAAATG 57.367 30.769 0.00 0.00 42.99 2.32
126 127 6.697019 ACAAACACAACAAGAGATGTAAATGC 59.303 34.615 0.00 0.00 42.99 3.56
127 128 6.389830 AACACAACAAGAGATGTAAATGCA 57.610 33.333 0.00 0.00 42.99 3.96
128 129 6.389830 ACACAACAAGAGATGTAAATGCAA 57.610 33.333 0.00 0.00 42.99 4.08
129 130 6.208644 ACACAACAAGAGATGTAAATGCAAC 58.791 36.000 0.00 0.00 42.99 4.17
130 131 6.183360 ACACAACAAGAGATGTAAATGCAACA 60.183 34.615 0.00 0.00 42.99 3.33
131 132 6.864685 CACAACAAGAGATGTAAATGCAACAT 59.135 34.615 2.13 2.13 42.99 2.71
132 133 8.022550 CACAACAAGAGATGTAAATGCAACATA 58.977 33.333 2.52 0.00 42.99 2.29
133 134 8.023128 ACAACAAGAGATGTAAATGCAACATAC 58.977 33.333 2.52 1.81 42.99 2.39
134 135 7.088589 ACAAGAGATGTAAATGCAACATACC 57.911 36.000 2.52 0.00 41.63 2.73
135 136 6.658816 ACAAGAGATGTAAATGCAACATACCA 59.341 34.615 2.52 0.00 41.63 3.25
136 137 7.340232 ACAAGAGATGTAAATGCAACATACCAT 59.660 33.333 2.52 0.00 41.63 3.55
137 138 7.502120 AGAGATGTAAATGCAACATACCATC 57.498 36.000 2.52 4.80 37.69 3.51
138 139 6.203530 AGAGATGTAAATGCAACATACCATCG 59.796 38.462 2.52 0.00 37.69 3.84
139 140 4.891627 TGTAAATGCAACATACCATCGG 57.108 40.909 0.00 0.00 0.00 4.18
142 143 4.370364 AAATGCAACATACCATCGGTTC 57.630 40.909 0.00 0.00 37.09 3.62
149 150 2.695666 ACATACCATCGGTTCCTCTGAG 59.304 50.000 0.00 0.00 37.09 3.35
175 176 2.489938 TGCTGGATGTCTGGTAAACC 57.510 50.000 0.00 0.00 0.00 3.27
179 180 3.681874 GCTGGATGTCTGGTAAACCCTAC 60.682 52.174 0.00 0.00 34.29 3.18
180 181 3.775316 CTGGATGTCTGGTAAACCCTACT 59.225 47.826 0.00 0.00 34.29 2.57
181 182 4.950361 TGGATGTCTGGTAAACCCTACTA 58.050 43.478 0.00 0.00 34.29 1.82
183 184 4.713321 GGATGTCTGGTAAACCCTACTACA 59.287 45.833 0.00 0.00 34.29 2.74
184 185 5.365895 GGATGTCTGGTAAACCCTACTACAT 59.634 44.000 0.00 0.00 34.29 2.29
187 188 5.544948 TGTCTGGTAAACCCTACTACATTGT 59.455 40.000 0.00 0.00 34.29 2.71
188 189 6.104665 GTCTGGTAAACCCTACTACATTGTC 58.895 44.000 0.00 0.00 34.29 3.18
190 191 6.270463 TCTGGTAAACCCTACTACATTGTCAA 59.730 38.462 0.00 0.00 34.29 3.18
191 192 6.839454 TGGTAAACCCTACTACATTGTCAAA 58.161 36.000 0.00 0.00 34.29 2.69
192 193 6.938030 TGGTAAACCCTACTACATTGTCAAAG 59.062 38.462 0.00 0.00 34.29 2.77
193 194 6.938596 GGTAAACCCTACTACATTGTCAAAGT 59.061 38.462 0.00 0.00 0.00 2.66
195 196 7.891498 AAACCCTACTACATTGTCAAAGTTT 57.109 32.000 0.00 0.00 0.00 2.66
196 197 7.891498 AACCCTACTACATTGTCAAAGTTTT 57.109 32.000 0.00 0.00 0.00 2.43
197 198 8.983702 AACCCTACTACATTGTCAAAGTTTTA 57.016 30.769 0.00 0.00 0.00 1.52
228 229 6.924913 ATAGCAGCTGTAGGAGATGATTAA 57.075 37.500 16.64 0.00 40.87 1.40
231 232 5.071519 AGCAGCTGTAGGAGATGATTAACAT 59.928 40.000 16.64 0.00 40.87 2.71
250 251 4.082125 ACATCACAGAAACCCTCCATTTC 58.918 43.478 0.00 0.00 36.49 2.17
255 256 6.493166 TCACAGAAACCCTCCATTTCAATAT 58.507 36.000 0.78 0.00 38.32 1.28
261 262 6.950860 AACCCTCCATTTCAATATTTTGGT 57.049 33.333 0.00 0.00 33.44 3.67
268 269 5.338219 CCATTTCAATATTTTGGTGGGCTGA 60.338 40.000 0.00 0.00 33.44 4.26
278 279 1.527433 GGTGGGCTGAGAAACTTGCC 61.527 60.000 0.00 0.00 44.22 4.52
306 307 9.846248 AGTTAAGCAGATGTTCACAAATTATTC 57.154 29.630 0.00 0.00 0.00 1.75
341 342 5.772825 TTTCCAGTGTCTGAATCTTTTGG 57.227 39.130 0.00 0.00 32.44 3.28
345 346 4.320788 CCAGTGTCTGAATCTTTTGGAAGC 60.321 45.833 0.00 0.00 32.44 3.86
348 349 2.493675 GTCTGAATCTTTTGGAAGCCCC 59.506 50.000 0.00 0.00 32.75 5.80
364 365 2.280186 CCGCGGGTTCCTAGCATC 60.280 66.667 20.10 0.00 0.00 3.91
371 375 1.771255 GGGTTCCTAGCATCTCATGGT 59.229 52.381 0.00 0.00 44.27 3.55
377 381 6.211584 GGTTCCTAGCATCTCATGGTAAGATA 59.788 42.308 0.00 0.00 42.06 1.98
384 388 6.552725 AGCATCTCATGGTAAGATACTGAAGA 59.447 38.462 0.00 0.00 39.58 2.87
385 389 7.235193 AGCATCTCATGGTAAGATACTGAAGAT 59.765 37.037 0.00 0.00 39.58 2.40
391 395 8.010697 TCATGGTAAGATACTGAAGATAAGGGA 58.989 37.037 0.00 0.00 0.00 4.20
394 398 9.053472 TGGTAAGATACTGAAGATAAGGGAAAA 57.947 33.333 0.00 0.00 0.00 2.29
458 463 8.543774 ACCATGTTTATGAACTTCAGTATCTCT 58.456 33.333 1.75 0.00 36.36 3.10
459 464 9.039870 CCATGTTTATGAACTTCAGTATCTCTC 57.960 37.037 1.75 0.00 36.36 3.20
460 465 9.039870 CATGTTTATGAACTTCAGTATCTCTCC 57.960 37.037 1.75 0.00 36.36 3.71
461 466 8.134202 TGTTTATGAACTTCAGTATCTCTCCA 57.866 34.615 1.75 0.00 36.70 3.86
462 467 8.593679 TGTTTATGAACTTCAGTATCTCTCCAA 58.406 33.333 1.75 0.00 36.70 3.53
469 474 9.606631 GAACTTCAGTATCTCTCCAAAACATAT 57.393 33.333 0.00 0.00 0.00 1.78
480 485 8.378565 TCTCTCCAAAACATATGAAAGACTCTT 58.621 33.333 10.38 0.00 0.00 2.85
481 486 8.327941 TCTCCAAAACATATGAAAGACTCTTG 57.672 34.615 10.38 1.31 0.00 3.02
483 488 7.874940 TCCAAAACATATGAAAGACTCTTGTG 58.125 34.615 10.38 0.00 0.00 3.33
484 489 6.583806 CCAAAACATATGAAAGACTCTTGTGC 59.416 38.462 10.38 0.00 0.00 4.57
485 490 7.365741 CAAAACATATGAAAGACTCTTGTGCT 58.634 34.615 10.38 0.00 0.00 4.40
486 491 6.492007 AACATATGAAAGACTCTTGTGCTG 57.508 37.500 10.38 0.00 0.00 4.41
487 492 5.798132 ACATATGAAAGACTCTTGTGCTGA 58.202 37.500 10.38 0.00 0.00 4.26
494 501 2.369860 AGACTCTTGTGCTGAATCCACA 59.630 45.455 0.00 0.00 41.11 4.17
528 535 5.163754 GCCAGTGTCACCATATCTGTAAAAC 60.164 44.000 0.00 0.00 0.00 2.43
531 538 7.298122 CAGTGTCACCATATCTGTAAAACAAC 58.702 38.462 0.00 0.00 0.00 3.32
537 544 9.508642 TCACCATATCTGTAAAACAACACATTA 57.491 29.630 0.00 0.00 0.00 1.90
546 553 9.729023 CTGTAAAACAACACATTAATCTCACAA 57.271 29.630 0.00 0.00 0.00 3.33
559 566 1.078918 TCACAATCTCTGCCTGCGG 60.079 57.895 0.00 0.00 0.00 5.69
569 576 4.740822 GCCTGCGGGTGATGGGTT 62.741 66.667 14.55 0.00 34.45 4.11
570 577 2.751436 CCTGCGGGTGATGGGTTG 60.751 66.667 2.29 0.00 0.00 3.77
590 597 6.405842 GGGTTGAAAGATGTTCAAGACAAAGT 60.406 38.462 1.86 0.00 42.62 2.66
603 1306 9.387123 GTTCAAGACAAAGTAATTGATCAAGAC 57.613 33.333 14.54 13.69 41.85 3.01
609 1312 9.424319 GACAAAGTAATTGATCAAGACAGAGTA 57.576 33.333 19.90 0.00 41.85 2.59
617 1320 4.223700 TGATCAAGACAGAGTATTGCAGGT 59.776 41.667 0.00 0.00 35.12 4.00
624 1327 4.290093 ACAGAGTATTGCAGGTCCTATGA 58.710 43.478 0.00 0.00 0.00 2.15
627 1330 5.536538 CAGAGTATTGCAGGTCCTATGAGTA 59.463 44.000 0.00 0.00 0.00 2.59
629 1332 6.784969 AGAGTATTGCAGGTCCTATGAGTATT 59.215 38.462 0.00 0.00 0.00 1.89
630 1333 6.763355 AGTATTGCAGGTCCTATGAGTATTG 58.237 40.000 0.00 0.00 0.00 1.90
631 1334 3.475566 TGCAGGTCCTATGAGTATTGC 57.524 47.619 0.00 0.00 0.00 3.56
632 1335 2.771372 TGCAGGTCCTATGAGTATTGCA 59.229 45.455 0.00 0.00 37.91 4.08
633 1336 3.199727 TGCAGGTCCTATGAGTATTGCAA 59.800 43.478 0.00 0.00 37.37 4.08
634 1337 3.812053 GCAGGTCCTATGAGTATTGCAAG 59.188 47.826 4.94 0.00 0.00 4.01
635 1338 4.443457 GCAGGTCCTATGAGTATTGCAAGA 60.443 45.833 4.94 0.00 0.00 3.02
636 1339 5.053145 CAGGTCCTATGAGTATTGCAAGAC 58.947 45.833 16.35 16.35 0.00 3.01
651 2956 7.772332 ATTGCAAGACTAAGTAATAACCTCG 57.228 36.000 4.94 0.00 0.00 4.63
695 3000 9.491675 AGAAGTTTTTAGAACTTACTAAGCCTC 57.508 33.333 0.77 0.00 40.27 4.70
696 3001 9.491675 GAAGTTTTTAGAACTTACTAAGCCTCT 57.508 33.333 0.77 1.91 40.27 3.69
697 3002 9.491675 AAGTTTTTAGAACTTACTAAGCCTCTC 57.508 33.333 0.00 0.00 38.58 3.20
698 3003 8.872134 AGTTTTTAGAACTTACTAAGCCTCTCT 58.128 33.333 4.88 1.90 34.51 3.10
699 3004 8.927721 GTTTTTAGAACTTACTAAGCCTCTCTG 58.072 37.037 4.88 0.00 34.51 3.35
700 3005 8.418597 TTTTAGAACTTACTAAGCCTCTCTGA 57.581 34.615 4.88 0.00 34.51 3.27
701 3006 8.418597 TTTAGAACTTACTAAGCCTCTCTGAA 57.581 34.615 4.88 0.46 34.51 3.02
702 3007 6.275494 AGAACTTACTAAGCCTCTCTGAAC 57.725 41.667 0.00 0.00 0.00 3.18
703 3008 6.014012 AGAACTTACTAAGCCTCTCTGAACT 58.986 40.000 0.00 0.00 0.00 3.01
709 3014 8.874744 TTACTAAGCCTCTCTGAACTTACTTA 57.125 34.615 0.00 0.00 0.00 2.24
715 3020 5.972382 GCCTCTCTGAACTTACTTATACACG 59.028 44.000 0.00 0.00 0.00 4.49
722 3027 9.350357 TCTGAACTTACTTATACACGTGATTTC 57.650 33.333 25.01 7.57 0.00 2.17
764 3079 8.610248 TCACCAATATTTATAACATGGTACGG 57.390 34.615 0.00 0.00 39.05 4.02
766 3744 8.500773 CACCAATATTTATAACATGGTACGGAC 58.499 37.037 0.00 0.00 39.05 4.79
771 3749 0.538118 TAACATGGTACGGACTGGCC 59.462 55.000 0.00 0.00 0.00 5.36
772 3750 2.189521 CATGGTACGGACTGGCCC 59.810 66.667 0.00 0.00 0.00 5.80
773 3751 2.040606 ATGGTACGGACTGGCCCT 59.959 61.111 0.00 0.00 0.00 5.19
775 3753 3.001406 GGTACGGACTGGCCCTGT 61.001 66.667 0.00 0.00 0.00 4.00
807 3785 7.279750 ACGATTTGTTTTGGGTGTAATTACT 57.720 32.000 16.33 0.00 0.00 2.24
1063 4067 1.677966 ACCTTCTGCCGCGTCTCTA 60.678 57.895 4.92 0.00 0.00 2.43
1094 4098 2.904131 CGCTTTCCCCTCCTCCTC 59.096 66.667 0.00 0.00 0.00 3.71
1106 4110 1.612442 CCTCCTCCCCCGTCAGAAA 60.612 63.158 0.00 0.00 0.00 2.52
1180 4184 1.271871 CCAAAGCAGGTACATCCACCA 60.272 52.381 0.00 0.00 41.40 4.17
1212 4216 0.814010 CCCGCCGTCCTTTGAATAGG 60.814 60.000 0.00 0.00 36.59 2.57
1214 4218 1.677820 CCGCCGTCCTTTGAATAGGTT 60.678 52.381 0.00 0.00 36.63 3.50
1238 4242 3.451894 GGCATTTCGGGCTGGGTG 61.452 66.667 0.00 0.00 0.00 4.61
1239 4243 2.676471 GCATTTCGGGCTGGGTGT 60.676 61.111 0.00 0.00 0.00 4.16
1264 4268 1.276421 CTCCATCCTCCGTTGTTCTGT 59.724 52.381 0.00 0.00 0.00 3.41
1268 4272 0.534203 TCCTCCGTTGTTCTGTTGCC 60.534 55.000 0.00 0.00 0.00 4.52
1286 4290 0.106369 CCCATGTGCCAGGTGATGAT 60.106 55.000 0.00 0.00 0.00 2.45
1444 4448 2.156098 GGAATTTCAGGTACGGCACAA 58.844 47.619 0.00 0.00 0.00 3.33
1447 4451 0.535553 TTTCAGGTACGGCACAACCC 60.536 55.000 0.00 0.00 34.89 4.11
1449 4453 3.643554 AGGTACGGCACAACCCCC 61.644 66.667 0.00 0.00 34.89 5.40
1466 4470 4.107051 CGCCCTTGCTTTGCTCCG 62.107 66.667 0.00 0.00 34.43 4.63
1479 4490 3.769739 TTGCTCCGCATGGATAGTATT 57.230 42.857 0.00 0.00 45.33 1.89
1480 4491 4.882842 TTGCTCCGCATGGATAGTATTA 57.117 40.909 0.00 0.00 45.33 0.98
1481 4492 4.456280 TGCTCCGCATGGATAGTATTAG 57.544 45.455 0.00 0.00 45.33 1.73
1482 4493 3.195610 TGCTCCGCATGGATAGTATTAGG 59.804 47.826 0.00 0.00 45.33 2.69
1483 4494 3.430929 GCTCCGCATGGATAGTATTAGGG 60.431 52.174 0.00 0.00 45.33 3.53
1484 4495 4.023980 CTCCGCATGGATAGTATTAGGGA 58.976 47.826 0.00 0.00 45.33 4.20
1485 4496 4.620723 TCCGCATGGATAGTATTAGGGAT 58.379 43.478 0.00 0.00 40.17 3.85
1486 4497 5.773091 TCCGCATGGATAGTATTAGGGATA 58.227 41.667 0.00 0.00 40.17 2.59
1487 4498 6.382087 TCCGCATGGATAGTATTAGGGATAT 58.618 40.000 0.00 0.00 40.17 1.63
1488 4499 7.532199 TCCGCATGGATAGTATTAGGGATATA 58.468 38.462 0.00 0.00 40.17 0.86
1489 4500 7.450634 TCCGCATGGATAGTATTAGGGATATAC 59.549 40.741 0.00 0.00 40.17 1.47
1490 4501 7.451877 CCGCATGGATAGTATTAGGGATATACT 59.548 40.741 0.00 0.00 38.67 2.12
1491 4502 8.300286 CGCATGGATAGTATTAGGGATATACTG 58.700 40.741 0.00 0.00 38.79 2.74
2346 7379 3.814504 AAGGACATGTGAAAGGGTGAT 57.185 42.857 1.15 0.00 0.00 3.06
2347 7380 3.814504 AGGACATGTGAAAGGGTGATT 57.185 42.857 1.15 0.00 0.00 2.57
2348 7381 3.690460 AGGACATGTGAAAGGGTGATTC 58.310 45.455 1.15 0.00 0.00 2.52
2349 7382 2.420022 GGACATGTGAAAGGGTGATTCG 59.580 50.000 1.15 0.00 0.00 3.34
2350 7383 3.334691 GACATGTGAAAGGGTGATTCGA 58.665 45.455 1.15 0.00 0.00 3.71
2351 7384 3.941483 GACATGTGAAAGGGTGATTCGAT 59.059 43.478 1.15 0.00 0.00 3.59
2352 7385 3.941483 ACATGTGAAAGGGTGATTCGATC 59.059 43.478 0.00 0.00 0.00 3.69
2353 7386 3.694043 TGTGAAAGGGTGATTCGATCA 57.306 42.857 0.00 0.00 36.84 2.92
2354 7387 4.220693 TGTGAAAGGGTGATTCGATCAT 57.779 40.909 0.00 0.00 42.04 2.45
2355 7388 4.191544 TGTGAAAGGGTGATTCGATCATC 58.808 43.478 0.00 0.00 42.04 2.92
2356 7389 4.191544 GTGAAAGGGTGATTCGATCATCA 58.808 43.478 9.37 3.61 42.22 3.07
2357 7390 4.635765 GTGAAAGGGTGATTCGATCATCAA 59.364 41.667 1.39 0.00 42.22 2.57
2358 7391 5.123820 GTGAAAGGGTGATTCGATCATCAAA 59.876 40.000 1.39 0.00 42.22 2.69
2359 7392 5.887598 TGAAAGGGTGATTCGATCATCAAAT 59.112 36.000 1.39 0.00 42.22 2.32
2360 7393 7.012327 GTGAAAGGGTGATTCGATCATCAAATA 59.988 37.037 1.39 0.00 42.22 1.40
2361 7394 7.555914 TGAAAGGGTGATTCGATCATCAAATAA 59.444 33.333 1.39 0.00 42.22 1.40
2682 7725 5.109210 CAGACTAACGCAGATTATGTTGGA 58.891 41.667 0.00 0.00 0.00 3.53
2729 7775 3.275999 TCCAACTGATGCACTGATGATG 58.724 45.455 0.00 0.00 0.00 3.07
2732 7778 4.412207 CAACTGATGCACTGATGATGTTG 58.588 43.478 0.00 0.00 0.00 3.33
2734 7780 4.329392 ACTGATGCACTGATGATGTTGAA 58.671 39.130 0.00 0.00 0.00 2.69
2737 7783 6.071560 ACTGATGCACTGATGATGTTGAAAAT 60.072 34.615 0.00 0.00 0.00 1.82
2918 7964 4.403113 ACGGAGGGATCTCTAAAAAGACTC 59.597 45.833 0.00 0.00 39.86 3.36
2922 7968 7.039363 CGGAGGGATCTCTAAAAAGACTCATAT 60.039 40.741 0.00 0.00 39.86 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.690778 GCGATCTGTGGGGTTGTGC 61.691 63.158 0.00 0.00 0.00 4.57
3 4 0.677731 ATGCGATCTGTGGGGTTGTG 60.678 55.000 0.00 0.00 0.00 3.33
7 8 1.131638 ATGTATGCGATCTGTGGGGT 58.868 50.000 0.00 0.00 0.00 4.95
8 9 1.516161 CATGTATGCGATCTGTGGGG 58.484 55.000 0.00 0.00 0.00 4.96
9 10 1.202687 ACCATGTATGCGATCTGTGGG 60.203 52.381 0.00 0.00 0.00 4.61
11 12 3.742882 CCTAACCATGTATGCGATCTGTG 59.257 47.826 0.00 0.00 0.00 3.66
12 13 3.641436 TCCTAACCATGTATGCGATCTGT 59.359 43.478 0.00 0.00 0.00 3.41
13 14 4.257267 TCCTAACCATGTATGCGATCTG 57.743 45.455 0.00 0.00 0.00 2.90
14 15 5.489792 AATCCTAACCATGTATGCGATCT 57.510 39.130 0.00 0.00 0.00 2.75
15 16 6.163476 TGTAATCCTAACCATGTATGCGATC 58.837 40.000 0.00 0.00 0.00 3.69
16 17 6.109156 TGTAATCCTAACCATGTATGCGAT 57.891 37.500 0.00 0.00 0.00 4.58
17 18 5.538849 TGTAATCCTAACCATGTATGCGA 57.461 39.130 0.00 0.00 0.00 5.10
18 19 5.758296 AGTTGTAATCCTAACCATGTATGCG 59.242 40.000 0.00 0.00 0.00 4.73
19 20 7.067008 ACAAGTTGTAATCCTAACCATGTATGC 59.933 37.037 6.75 0.00 30.45 3.14
20 21 8.397906 CACAAGTTGTAATCCTAACCATGTATG 58.602 37.037 8.49 0.00 30.81 2.39
21 22 8.107095 ACACAAGTTGTAATCCTAACCATGTAT 58.893 33.333 8.49 0.00 36.32 2.29
22 23 7.389330 CACACAAGTTGTAATCCTAACCATGTA 59.611 37.037 8.49 0.00 35.67 2.29
23 24 6.206634 CACACAAGTTGTAATCCTAACCATGT 59.793 38.462 8.49 0.00 35.67 3.21
24 25 6.611381 CACACAAGTTGTAATCCTAACCATG 58.389 40.000 8.49 0.00 35.67 3.66
25 26 5.183140 GCACACAAGTTGTAATCCTAACCAT 59.817 40.000 8.49 0.00 35.67 3.55
26 27 4.517453 GCACACAAGTTGTAATCCTAACCA 59.483 41.667 8.49 0.00 35.67 3.67
27 28 4.082949 GGCACACAAGTTGTAATCCTAACC 60.083 45.833 8.49 0.00 35.67 2.85
28 29 4.517453 TGGCACACAAGTTGTAATCCTAAC 59.483 41.667 8.49 0.00 35.67 2.34
29 30 4.720046 TGGCACACAAGTTGTAATCCTAA 58.280 39.130 8.49 0.00 35.67 2.69
30 31 4.359434 TGGCACACAAGTTGTAATCCTA 57.641 40.909 8.49 0.00 35.67 2.94
31 32 3.222173 TGGCACACAAGTTGTAATCCT 57.778 42.857 8.49 0.00 35.67 3.24
42 43 2.520458 CCCTCCCTTGGCACACAA 59.480 61.111 0.00 0.00 39.29 3.33
43 44 3.579302 CCCCTCCCTTGGCACACA 61.579 66.667 0.00 0.00 39.29 3.72
44 45 4.366684 CCCCCTCCCTTGGCACAC 62.367 72.222 0.00 0.00 39.29 3.82
45 46 4.608514 TCCCCCTCCCTTGGCACA 62.609 66.667 0.00 0.00 0.00 4.57
46 47 3.732849 CTCCCCCTCCCTTGGCAC 61.733 72.222 0.00 0.00 0.00 5.01
47 48 3.950861 CTCTCCCCCTCCCTTGGCA 62.951 68.421 0.00 0.00 0.00 4.92
48 49 3.093172 CTCTCCCCCTCCCTTGGC 61.093 72.222 0.00 0.00 0.00 4.52
49 50 1.383803 CTCTCTCCCCCTCCCTTGG 60.384 68.421 0.00 0.00 0.00 3.61
50 51 0.398381 CTCTCTCTCCCCCTCCCTTG 60.398 65.000 0.00 0.00 0.00 3.61
51 52 0.556380 TCTCTCTCTCCCCCTCCCTT 60.556 60.000 0.00 0.00 0.00 3.95
52 53 0.998945 CTCTCTCTCTCCCCCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
53 54 0.996762 TCTCTCTCTCTCCCCCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
54 55 0.478507 CTCTCTCTCTCTCCCCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
55 56 1.421646 CTCTCTCTCTCTCTCCCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
56 57 1.010793 TCTCTCTCTCTCTCTCCCCCT 59.989 57.143 0.00 0.00 0.00 4.79
57 58 1.421646 CTCTCTCTCTCTCTCTCCCCC 59.578 61.905 0.00 0.00 0.00 5.40
58 59 2.127708 ACTCTCTCTCTCTCTCTCCCC 58.872 57.143 0.00 0.00 0.00 4.81
59 60 3.054361 ACAACTCTCTCTCTCTCTCTCCC 60.054 52.174 0.00 0.00 0.00 4.30
60 61 4.222124 ACAACTCTCTCTCTCTCTCTCC 57.778 50.000 0.00 0.00 0.00 3.71
61 62 5.003804 ACAACAACTCTCTCTCTCTCTCTC 58.996 45.833 0.00 0.00 0.00 3.20
62 63 4.761739 CACAACAACTCTCTCTCTCTCTCT 59.238 45.833 0.00 0.00 0.00 3.10
63 64 4.518970 ACACAACAACTCTCTCTCTCTCTC 59.481 45.833 0.00 0.00 0.00 3.20
64 65 4.469657 ACACAACAACTCTCTCTCTCTCT 58.530 43.478 0.00 0.00 0.00 3.10
65 66 4.846779 ACACAACAACTCTCTCTCTCTC 57.153 45.455 0.00 0.00 0.00 3.20
66 67 4.214545 CGTACACAACAACTCTCTCTCTCT 59.785 45.833 0.00 0.00 0.00 3.10
67 68 4.023878 ACGTACACAACAACTCTCTCTCTC 60.024 45.833 0.00 0.00 0.00 3.20
68 69 3.884091 ACGTACACAACAACTCTCTCTCT 59.116 43.478 0.00 0.00 0.00 3.10
69 70 3.975670 CACGTACACAACAACTCTCTCTC 59.024 47.826 0.00 0.00 0.00 3.20
70 71 3.795826 GCACGTACACAACAACTCTCTCT 60.796 47.826 0.00 0.00 0.00 3.10
71 72 2.471743 GCACGTACACAACAACTCTCTC 59.528 50.000 0.00 0.00 0.00 3.20
72 73 2.470821 GCACGTACACAACAACTCTCT 58.529 47.619 0.00 0.00 0.00 3.10
73 74 1.189446 CGCACGTACACAACAACTCTC 59.811 52.381 0.00 0.00 0.00 3.20
74 75 1.205657 CGCACGTACACAACAACTCT 58.794 50.000 0.00 0.00 0.00 3.24
75 76 0.925466 ACGCACGTACACAACAACTC 59.075 50.000 0.00 0.00 0.00 3.01
76 77 1.061421 CAACGCACGTACACAACAACT 59.939 47.619 0.00 0.00 0.00 3.16
77 78 1.448722 CAACGCACGTACACAACAAC 58.551 50.000 0.00 0.00 0.00 3.32
78 79 0.247735 GCAACGCACGTACACAACAA 60.248 50.000 0.00 0.00 0.00 2.83
79 80 1.084935 AGCAACGCACGTACACAACA 61.085 50.000 0.00 0.00 0.00 3.33
80 81 0.653323 CAGCAACGCACGTACACAAC 60.653 55.000 0.00 0.00 0.00 3.32
81 82 0.806492 TCAGCAACGCACGTACACAA 60.806 50.000 0.00 0.00 0.00 3.33
82 83 0.806492 TTCAGCAACGCACGTACACA 60.806 50.000 0.00 0.00 0.00 3.72
83 84 0.382636 GTTCAGCAACGCACGTACAC 60.383 55.000 0.00 0.00 0.00 2.90
84 85 0.806492 TGTTCAGCAACGCACGTACA 60.806 50.000 0.00 0.00 34.95 2.90
85 86 0.302288 TTGTTCAGCAACGCACGTAC 59.698 50.000 0.00 0.00 34.95 3.67
86 87 1.007580 TTTGTTCAGCAACGCACGTA 58.992 45.000 0.00 0.00 36.72 3.57
87 88 0.522495 GTTTGTTCAGCAACGCACGT 60.522 50.000 0.00 0.00 36.72 4.49
88 89 0.522286 TGTTTGTTCAGCAACGCACG 60.522 50.000 0.00 0.00 36.72 5.34
89 90 0.913876 GTGTTTGTTCAGCAACGCAC 59.086 50.000 0.00 0.00 36.72 5.34
90 91 0.523519 TGTGTTTGTTCAGCAACGCA 59.476 45.000 0.00 0.00 36.72 5.24
91 92 1.320259 GTTGTGTTTGTTCAGCAACGC 59.680 47.619 0.00 0.00 36.72 4.84
92 93 2.590073 TGTTGTGTTTGTTCAGCAACG 58.410 42.857 0.00 0.00 41.38 4.10
93 94 4.233789 TCTTGTTGTGTTTGTTCAGCAAC 58.766 39.130 0.00 0.00 39.62 4.17
94 95 4.217334 TCTCTTGTTGTGTTTGTTCAGCAA 59.783 37.500 0.00 0.00 34.65 3.91
95 96 3.755905 TCTCTTGTTGTGTTTGTTCAGCA 59.244 39.130 0.00 0.00 0.00 4.41
96 97 4.355543 TCTCTTGTTGTGTTTGTTCAGC 57.644 40.909 0.00 0.00 0.00 4.26
97 98 5.883661 ACATCTCTTGTTGTGTTTGTTCAG 58.116 37.500 0.00 0.00 33.74 3.02
98 99 5.895636 ACATCTCTTGTTGTGTTTGTTCA 57.104 34.783 0.00 0.00 33.74 3.18
99 100 8.745837 CATTTACATCTCTTGTTGTGTTTGTTC 58.254 33.333 0.00 0.00 39.87 3.18
100 101 7.222611 GCATTTACATCTCTTGTTGTGTTTGTT 59.777 33.333 0.00 0.00 39.87 2.83
101 102 6.697019 GCATTTACATCTCTTGTTGTGTTTGT 59.303 34.615 0.00 0.00 39.87 2.83
102 103 6.696583 TGCATTTACATCTCTTGTTGTGTTTG 59.303 34.615 0.00 0.00 39.87 2.93
103 104 6.804677 TGCATTTACATCTCTTGTTGTGTTT 58.195 32.000 0.00 0.00 39.87 2.83
104 105 6.389830 TGCATTTACATCTCTTGTTGTGTT 57.610 33.333 0.00 0.00 39.87 3.32
105 106 6.183360 TGTTGCATTTACATCTCTTGTTGTGT 60.183 34.615 0.00 0.00 39.87 3.72
106 107 6.207928 TGTTGCATTTACATCTCTTGTTGTG 58.792 36.000 0.00 0.00 39.87 3.33
107 108 6.389830 TGTTGCATTTACATCTCTTGTTGT 57.610 33.333 0.00 0.00 39.87 3.32
108 109 7.485913 GGTATGTTGCATTTACATCTCTTGTTG 59.514 37.037 5.79 0.00 39.87 3.33
109 110 7.176515 TGGTATGTTGCATTTACATCTCTTGTT 59.823 33.333 5.79 0.00 39.87 2.83
110 111 6.658816 TGGTATGTTGCATTTACATCTCTTGT 59.341 34.615 5.79 0.00 42.62 3.16
111 112 7.087409 TGGTATGTTGCATTTACATCTCTTG 57.913 36.000 5.79 0.00 37.42 3.02
112 113 7.254898 CGATGGTATGTTGCATTTACATCTCTT 60.255 37.037 5.79 0.00 37.42 2.85
113 114 6.203530 CGATGGTATGTTGCATTTACATCTCT 59.796 38.462 5.79 0.00 37.42 3.10
114 115 6.365839 CGATGGTATGTTGCATTTACATCTC 58.634 40.000 5.79 2.20 37.42 2.75
115 116 5.239306 CCGATGGTATGTTGCATTTACATCT 59.761 40.000 5.79 0.00 37.42 2.90
116 117 5.008613 ACCGATGGTATGTTGCATTTACATC 59.991 40.000 5.79 6.25 37.42 3.06
117 118 4.887071 ACCGATGGTATGTTGCATTTACAT 59.113 37.500 7.60 7.60 39.44 2.29
118 119 4.265893 ACCGATGGTATGTTGCATTTACA 58.734 39.130 0.00 0.00 32.11 2.41
119 120 4.893424 ACCGATGGTATGTTGCATTTAC 57.107 40.909 0.00 0.00 32.11 2.01
120 121 4.336993 GGAACCGATGGTATGTTGCATTTA 59.663 41.667 0.00 0.00 33.12 1.40
121 122 3.130340 GGAACCGATGGTATGTTGCATTT 59.870 43.478 0.00 0.00 33.12 2.32
122 123 2.687935 GGAACCGATGGTATGTTGCATT 59.312 45.455 0.00 0.00 33.12 3.56
123 124 2.092429 AGGAACCGATGGTATGTTGCAT 60.092 45.455 0.00 0.00 33.12 3.96
124 125 1.280710 AGGAACCGATGGTATGTTGCA 59.719 47.619 0.00 0.00 33.12 4.08
125 126 1.940613 GAGGAACCGATGGTATGTTGC 59.059 52.381 0.00 0.00 33.12 4.17
126 127 3.118775 TCAGAGGAACCGATGGTATGTTG 60.119 47.826 0.00 0.00 33.12 3.33
127 128 3.104512 TCAGAGGAACCGATGGTATGTT 58.895 45.455 0.00 0.00 33.12 2.71
128 129 2.695666 CTCAGAGGAACCGATGGTATGT 59.304 50.000 0.00 0.00 33.12 2.29
129 130 2.036475 CCTCAGAGGAACCGATGGTATG 59.964 54.545 11.62 0.00 37.67 2.39
130 131 2.320781 CCTCAGAGGAACCGATGGTAT 58.679 52.381 11.62 0.00 37.67 2.73
131 132 1.006758 ACCTCAGAGGAACCGATGGTA 59.993 52.381 24.45 0.00 37.67 3.25
132 133 0.252284 ACCTCAGAGGAACCGATGGT 60.252 55.000 24.45 0.00 37.67 3.55
133 134 1.409427 GTACCTCAGAGGAACCGATGG 59.591 57.143 24.45 0.00 37.67 3.51
134 135 2.100197 TGTACCTCAGAGGAACCGATG 58.900 52.381 24.45 0.00 37.67 3.84
135 136 2.526888 TGTACCTCAGAGGAACCGAT 57.473 50.000 24.45 1.52 37.67 4.18
136 137 2.496070 CAATGTACCTCAGAGGAACCGA 59.504 50.000 24.45 2.36 37.67 4.69
137 138 2.893637 CAATGTACCTCAGAGGAACCG 58.106 52.381 24.45 2.45 37.67 4.44
138 139 2.237392 AGCAATGTACCTCAGAGGAACC 59.763 50.000 24.45 10.27 37.67 3.62
139 140 3.265791 CAGCAATGTACCTCAGAGGAAC 58.734 50.000 24.45 4.02 37.67 3.62
142 143 1.833630 TCCAGCAATGTACCTCAGAGG 59.166 52.381 15.72 15.72 42.49 3.69
149 150 2.292267 CCAGACATCCAGCAATGTACC 58.708 52.381 0.08 0.00 39.93 3.34
192 193 9.884465 CCTACAGCTGCTATTATTTCATAAAAC 57.116 33.333 15.27 0.00 0.00 2.43
193 194 9.845740 TCCTACAGCTGCTATTATTTCATAAAA 57.154 29.630 15.27 0.00 0.00 1.52
195 196 8.870116 TCTCCTACAGCTGCTATTATTTCATAA 58.130 33.333 15.27 0.00 0.00 1.90
196 197 8.422577 TCTCCTACAGCTGCTATTATTTCATA 57.577 34.615 15.27 0.00 0.00 2.15
197 198 7.308450 TCTCCTACAGCTGCTATTATTTCAT 57.692 36.000 15.27 0.00 0.00 2.57
228 229 3.814504 AATGGAGGGTTTCTGTGATGT 57.185 42.857 0.00 0.00 0.00 3.06
231 232 3.874383 TGAAATGGAGGGTTTCTGTGA 57.126 42.857 0.00 0.00 36.71 3.58
250 251 5.047092 AGTTTCTCAGCCCACCAAAATATTG 60.047 40.000 0.00 0.00 36.25 1.90
255 256 2.430332 CAAGTTTCTCAGCCCACCAAAA 59.570 45.455 0.00 0.00 0.00 2.44
261 262 1.600636 CGGCAAGTTTCTCAGCCCA 60.601 57.895 0.00 0.00 44.18 5.36
268 269 2.808543 CTGCTTAACTCGGCAAGTTTCT 59.191 45.455 8.78 0.00 46.26 2.52
278 279 4.990543 TTGTGAACATCTGCTTAACTCG 57.009 40.909 0.00 0.00 0.00 4.18
306 307 7.337689 TCAGACACTGGAAATCCATGAATAAAG 59.662 37.037 1.93 0.00 46.46 1.85
310 311 5.183530 TCAGACACTGGAAATCCATGAAT 57.816 39.130 1.93 0.00 46.46 2.57
311 312 4.639078 TCAGACACTGGAAATCCATGAA 57.361 40.909 1.93 0.00 46.46 2.57
328 329 2.807676 GGGGCTTCCAAAAGATTCAGA 58.192 47.619 0.00 0.00 34.14 3.27
348 349 1.300233 GAGATGCTAGGAACCCGCG 60.300 63.158 0.00 0.00 0.00 6.46
353 354 5.537300 TCTTACCATGAGATGCTAGGAAC 57.463 43.478 0.00 0.00 0.00 3.62
356 357 6.435591 TCAGTATCTTACCATGAGATGCTAGG 59.564 42.308 11.47 3.76 42.31 3.02
364 365 8.310382 CCCTTATCTTCAGTATCTTACCATGAG 58.690 40.741 0.00 0.00 0.00 2.90
377 381 6.498303 AGCCAAAATTTTCCCTTATCTTCAGT 59.502 34.615 0.00 0.00 0.00 3.41
384 388 6.686484 ACTGAAGCCAAAATTTTCCCTTAT 57.314 33.333 0.00 0.00 0.00 1.73
385 389 6.493189 AACTGAAGCCAAAATTTTCCCTTA 57.507 33.333 0.00 0.00 0.00 2.69
391 395 6.239217 AGAGGAAACTGAAGCCAAAATTTT 57.761 33.333 0.00 0.00 44.43 1.82
394 398 3.829026 GGAGAGGAAACTGAAGCCAAAAT 59.171 43.478 0.00 0.00 44.43 1.82
397 401 1.073923 GGGAGAGGAAACTGAAGCCAA 59.926 52.381 0.00 0.00 44.43 4.52
441 446 7.453393 TGTTTTGGAGAGATACTGAAGTTCAT 58.547 34.615 5.91 0.00 0.00 2.57
458 463 7.522073 GCACAAGAGTCTTTCATATGTTTTGGA 60.522 37.037 1.56 0.00 0.00 3.53
459 464 6.583806 GCACAAGAGTCTTTCATATGTTTTGG 59.416 38.462 1.56 0.00 0.00 3.28
460 465 7.325338 CAGCACAAGAGTCTTTCATATGTTTTG 59.675 37.037 1.56 0.00 0.00 2.44
461 466 7.229306 TCAGCACAAGAGTCTTTCATATGTTTT 59.771 33.333 1.56 0.00 0.00 2.43
462 467 6.712095 TCAGCACAAGAGTCTTTCATATGTTT 59.288 34.615 1.56 0.00 0.00 2.83
469 474 4.067896 GGATTCAGCACAAGAGTCTTTCA 58.932 43.478 1.56 0.00 0.00 2.69
484 489 2.625737 CTACAGTGGCTGTGGATTCAG 58.374 52.381 11.57 0.00 44.01 3.02
485 490 1.339055 GCTACAGTGGCTGTGGATTCA 60.339 52.381 15.17 0.00 44.01 2.57
486 491 1.373570 GCTACAGTGGCTGTGGATTC 58.626 55.000 15.17 0.00 44.01 2.52
487 492 0.035056 GGCTACAGTGGCTGTGGATT 60.035 55.000 15.17 0.00 44.01 3.01
510 517 7.197071 TGTGTTGTTTTACAGATATGGTGAC 57.803 36.000 0.00 0.00 0.00 3.67
528 535 6.965500 GCAGAGATTGTGAGATTAATGTGTTG 59.035 38.462 0.00 0.00 0.00 3.33
531 538 5.821470 AGGCAGAGATTGTGAGATTAATGTG 59.179 40.000 0.00 0.00 0.00 3.21
537 544 2.641305 GCAGGCAGAGATTGTGAGATT 58.359 47.619 0.00 0.00 0.00 2.40
559 566 3.826157 TGAACATCTTTCAACCCATCACC 59.174 43.478 0.00 0.00 0.00 4.02
567 574 9.736023 ATTACTTTGTCTTGAACATCTTTCAAC 57.264 29.630 0.00 0.00 37.82 3.18
569 576 9.734620 CAATTACTTTGTCTTGAACATCTTTCA 57.265 29.630 0.00 0.00 37.82 2.69
570 577 9.950680 TCAATTACTTTGTCTTGAACATCTTTC 57.049 29.630 0.00 0.00 37.82 2.62
590 597 7.496920 CCTGCAATACTCTGTCTTGATCAATTA 59.503 37.037 8.96 0.00 0.00 1.40
597 604 3.055819 GGACCTGCAATACTCTGTCTTGA 60.056 47.826 0.00 0.00 0.00 3.02
598 605 3.055530 AGGACCTGCAATACTCTGTCTTG 60.056 47.826 0.00 0.00 0.00 3.02
603 1306 4.343526 ACTCATAGGACCTGCAATACTCTG 59.656 45.833 3.53 0.00 0.00 3.35
609 1312 4.141413 TGCAATACTCATAGGACCTGCAAT 60.141 41.667 3.53 0.00 35.75 3.56
611 1314 2.771372 TGCAATACTCATAGGACCTGCA 59.229 45.455 3.53 0.00 36.28 4.41
617 1320 7.661536 ACTTAGTCTTGCAATACTCATAGGA 57.338 36.000 19.57 0.16 0.00 2.94
624 1327 9.819267 GAGGTTATTACTTAGTCTTGCAATACT 57.181 33.333 19.84 19.84 0.00 2.12
627 1330 7.328737 ACGAGGTTATTACTTAGTCTTGCAAT 58.671 34.615 0.00 0.00 0.00 3.56
629 1332 6.071784 TGACGAGGTTATTACTTAGTCTTGCA 60.072 38.462 8.28 0.00 37.07 4.08
630 1333 6.327934 TGACGAGGTTATTACTTAGTCTTGC 58.672 40.000 8.28 0.00 37.07 4.01
631 1334 9.448294 GTATGACGAGGTTATTACTTAGTCTTG 57.552 37.037 8.28 0.00 37.07 3.02
632 1335 9.182214 TGTATGACGAGGTTATTACTTAGTCTT 57.818 33.333 8.28 5.29 37.07 3.01
633 1336 8.743085 TGTATGACGAGGTTATTACTTAGTCT 57.257 34.615 8.28 0.00 37.07 3.24
634 1337 9.395707 CATGTATGACGAGGTTATTACTTAGTC 57.604 37.037 0.00 1.23 36.81 2.59
635 1338 7.866393 GCATGTATGACGAGGTTATTACTTAGT 59.134 37.037 0.00 0.00 0.00 2.24
636 1339 7.865889 TGCATGTATGACGAGGTTATTACTTAG 59.134 37.037 0.00 0.00 0.00 2.18
651 2956 8.970691 AAACTTCTAAAATGTGCATGTATGAC 57.029 30.769 0.00 0.00 0.00 3.06
681 2986 6.673839 AAGTTCAGAGAGGCTTAGTAAGTT 57.326 37.500 11.51 0.69 0.00 2.66
682 2987 6.949463 AGTAAGTTCAGAGAGGCTTAGTAAGT 59.051 38.462 11.51 0.00 0.00 2.24
683 2988 7.399245 AGTAAGTTCAGAGAGGCTTAGTAAG 57.601 40.000 5.47 5.47 0.00 2.34
684 2989 7.778185 AAGTAAGTTCAGAGAGGCTTAGTAA 57.222 36.000 0.00 0.00 0.00 2.24
686 2991 7.964666 ATAAGTAAGTTCAGAGAGGCTTAGT 57.035 36.000 0.00 0.00 0.00 2.24
687 2992 8.904834 TGTATAAGTAAGTTCAGAGAGGCTTAG 58.095 37.037 0.00 0.00 0.00 2.18
688 2993 8.684520 GTGTATAAGTAAGTTCAGAGAGGCTTA 58.315 37.037 0.00 0.00 0.00 3.09
689 2994 7.548967 GTGTATAAGTAAGTTCAGAGAGGCTT 58.451 38.462 0.00 0.00 0.00 4.35
690 2995 6.183360 CGTGTATAAGTAAGTTCAGAGAGGCT 60.183 42.308 0.00 0.00 0.00 4.58
691 2996 5.972382 CGTGTATAAGTAAGTTCAGAGAGGC 59.028 44.000 0.00 0.00 0.00 4.70
692 2997 6.967767 CACGTGTATAAGTAAGTTCAGAGAGG 59.032 42.308 7.58 0.00 0.00 3.69
693 2998 7.749808 TCACGTGTATAAGTAAGTTCAGAGAG 58.250 38.462 16.51 0.00 0.00 3.20
694 2999 7.677454 TCACGTGTATAAGTAAGTTCAGAGA 57.323 36.000 16.51 0.00 0.00 3.10
695 3000 8.912787 AATCACGTGTATAAGTAAGTTCAGAG 57.087 34.615 16.51 0.00 0.00 3.35
696 3001 9.350357 GAAATCACGTGTATAAGTAAGTTCAGA 57.650 33.333 16.51 0.00 0.00 3.27
697 3002 8.311822 CGAAATCACGTGTATAAGTAAGTTCAG 58.688 37.037 16.51 2.25 0.00 3.02
698 3003 8.022550 TCGAAATCACGTGTATAAGTAAGTTCA 58.977 33.333 16.51 0.00 34.70 3.18
699 3004 8.385789 TCGAAATCACGTGTATAAGTAAGTTC 57.614 34.615 16.51 7.51 34.70 3.01
700 3005 8.239314 TCTCGAAATCACGTGTATAAGTAAGTT 58.761 33.333 16.51 0.00 34.70 2.66
701 3006 7.755591 TCTCGAAATCACGTGTATAAGTAAGT 58.244 34.615 16.51 0.00 34.70 2.24
702 3007 7.909121 ACTCTCGAAATCACGTGTATAAGTAAG 59.091 37.037 16.51 8.92 34.70 2.34
703 3008 7.755591 ACTCTCGAAATCACGTGTATAAGTAA 58.244 34.615 16.51 0.00 34.70 2.24
709 3014 4.625742 CCAAACTCTCGAAATCACGTGTAT 59.374 41.667 16.51 5.06 34.70 2.29
715 3020 3.139077 ACCACCAAACTCTCGAAATCAC 58.861 45.455 0.00 0.00 0.00 3.06
722 3027 3.334272 GTGAAAACCACCAAACTCTCG 57.666 47.619 0.00 0.00 39.86 4.04
755 3070 2.189521 GGGCCAGTCCGTACCATG 59.810 66.667 4.39 0.00 34.94 3.66
756 3071 2.040606 AGGGCCAGTCCGTACCAT 59.959 61.111 6.18 0.00 34.94 3.55
757 3072 3.000819 CAGGGCCAGTCCGTACCA 61.001 66.667 6.18 0.00 34.94 3.25
758 3073 3.001406 ACAGGGCCAGTCCGTACC 61.001 66.667 6.18 0.00 34.94 3.34
759 3074 1.946475 GAGACAGGGCCAGTCCGTAC 61.946 65.000 23.71 10.57 36.68 3.67
761 3076 2.997897 GAGACAGGGCCAGTCCGT 60.998 66.667 23.71 7.97 36.68 4.69
762 3077 4.135153 CGAGACAGGGCCAGTCCG 62.135 72.222 23.71 21.28 36.68 4.79
763 3078 2.680352 TCGAGACAGGGCCAGTCC 60.680 66.667 23.71 14.69 36.68 3.85
764 3079 2.574399 GTCGAGACAGGGCCAGTC 59.426 66.667 20.42 20.42 36.26 3.51
766 3744 3.062466 TCGTCGAGACAGGGCCAG 61.062 66.667 6.18 0.00 0.00 4.85
807 3785 1.915266 CAGAGACAGGGCCAGTCCA 60.915 63.158 23.71 0.00 36.68 4.02
1094 4098 1.375523 CGAAGGTTTCTGACGGGGG 60.376 63.158 0.00 0.00 0.00 5.40
1207 4211 3.685550 CGAAATGCCCCTCTCAACCTATT 60.686 47.826 0.00 0.00 0.00 1.73
1212 4216 1.032114 CCCGAAATGCCCCTCTCAAC 61.032 60.000 0.00 0.00 0.00 3.18
1214 4218 2.998097 CCCGAAATGCCCCTCTCA 59.002 61.111 0.00 0.00 0.00 3.27
1238 4242 2.496470 ACAACGGAGGATGGAGTAAGAC 59.504 50.000 0.00 0.00 0.00 3.01
1239 4243 2.816411 ACAACGGAGGATGGAGTAAGA 58.184 47.619 0.00 0.00 0.00 2.10
1268 4272 1.029681 CATCATCACCTGGCACATGG 58.970 55.000 0.00 0.00 38.20 3.66
1286 4290 2.604686 AGGACGGCCTTGCTCTCA 60.605 61.111 2.12 0.00 43.90 3.27
1466 4470 9.368416 TCAGTATATCCCTAATACTATCCATGC 57.632 37.037 0.00 0.00 37.93 4.06
1479 4490 8.446394 AGCTAAACACTAGTCAGTATATCCCTA 58.554 37.037 0.00 0.00 32.21 3.53
1480 4491 7.299134 AGCTAAACACTAGTCAGTATATCCCT 58.701 38.462 0.00 0.00 32.21 4.20
1481 4492 7.527568 AGCTAAACACTAGTCAGTATATCCC 57.472 40.000 0.00 0.00 32.21 3.85
1485 4496 9.471702 AGGTAAAGCTAAACACTAGTCAGTATA 57.528 33.333 0.00 0.00 32.21 1.47
1486 4497 8.363761 AGGTAAAGCTAAACACTAGTCAGTAT 57.636 34.615 0.00 0.00 32.21 2.12
1487 4498 7.771927 AGGTAAAGCTAAACACTAGTCAGTA 57.228 36.000 0.00 0.00 32.21 2.74
1488 4499 6.667558 AGGTAAAGCTAAACACTAGTCAGT 57.332 37.500 0.00 0.00 34.42 3.41
1489 4500 7.152645 TGAAGGTAAAGCTAAACACTAGTCAG 58.847 38.462 0.00 0.00 0.00 3.51
1490 4501 7.058023 TGAAGGTAAAGCTAAACACTAGTCA 57.942 36.000 0.00 0.00 0.00 3.41
1491 4502 7.958053 TTGAAGGTAAAGCTAAACACTAGTC 57.042 36.000 0.00 0.00 0.00 2.59
2346 7379 7.041721 ACTGCTACAGTTATTTGATGATCGAA 58.958 34.615 0.00 0.00 42.59 3.71
2347 7380 6.573434 ACTGCTACAGTTATTTGATGATCGA 58.427 36.000 0.00 0.00 42.59 3.59
2348 7381 6.834959 ACTGCTACAGTTATTTGATGATCG 57.165 37.500 0.00 0.00 42.59 3.69
2349 7382 9.534565 TTCTACTGCTACAGTTATTTGATGATC 57.465 33.333 5.44 0.00 42.59 2.92
2350 7383 9.319143 GTTCTACTGCTACAGTTATTTGATGAT 57.681 33.333 5.44 0.00 42.59 2.45
2351 7384 7.764443 GGTTCTACTGCTACAGTTATTTGATGA 59.236 37.037 5.44 0.00 42.59 2.92
2352 7385 7.011482 GGGTTCTACTGCTACAGTTATTTGATG 59.989 40.741 5.44 0.00 42.59 3.07
2353 7386 7.048512 GGGTTCTACTGCTACAGTTATTTGAT 58.951 38.462 5.44 0.00 42.59 2.57
2354 7387 6.403878 GGGTTCTACTGCTACAGTTATTTGA 58.596 40.000 5.44 0.00 42.59 2.69
2355 7388 5.585047 GGGGTTCTACTGCTACAGTTATTTG 59.415 44.000 5.44 0.00 42.59 2.32
2356 7389 5.249852 TGGGGTTCTACTGCTACAGTTATTT 59.750 40.000 5.44 0.00 42.59 1.40
2357 7390 4.781087 TGGGGTTCTACTGCTACAGTTATT 59.219 41.667 5.44 0.00 42.59 1.40
2358 7391 4.359105 TGGGGTTCTACTGCTACAGTTAT 58.641 43.478 5.44 0.00 42.59 1.89
2359 7392 3.781808 TGGGGTTCTACTGCTACAGTTA 58.218 45.455 5.44 0.00 42.59 2.24
2360 7393 2.616524 TGGGGTTCTACTGCTACAGTT 58.383 47.619 5.44 0.00 42.59 3.16
2729 7775 7.914346 TCACAATGATTTTGGCAAATTTTCAAC 59.086 29.630 14.29 0.00 32.35 3.18
2732 7778 8.344098 TCTTCACAATGATTTTGGCAAATTTTC 58.656 29.630 14.29 11.49 32.35 2.29
2734 7780 7.804843 TCTTCACAATGATTTTGGCAAATTT 57.195 28.000 14.29 4.53 32.35 1.82
2737 7783 7.814107 GTCTATCTTCACAATGATTTTGGCAAA 59.186 33.333 8.93 8.93 0.00 3.68
2891 7937 4.602340 TTTTAGAGATCCCTCCGTATGC 57.398 45.455 0.00 0.00 40.30 3.14
2918 7964 6.494666 TGTACTCCCCTGTTCCTAAATATG 57.505 41.667 0.00 0.00 0.00 1.78
2922 7968 4.566907 GCAATGTACTCCCCTGTTCCTAAA 60.567 45.833 0.00 0.00 0.00 1.85
2924 7970 2.504175 GCAATGTACTCCCCTGTTCCTA 59.496 50.000 0.00 0.00 0.00 2.94
2925 7971 1.282157 GCAATGTACTCCCCTGTTCCT 59.718 52.381 0.00 0.00 0.00 3.36
2926 7972 1.004277 TGCAATGTACTCCCCTGTTCC 59.996 52.381 0.00 0.00 0.00 3.62
2927 7973 2.489938 TGCAATGTACTCCCCTGTTC 57.510 50.000 0.00 0.00 0.00 3.18
2928 7974 3.371595 GGTATGCAATGTACTCCCCTGTT 60.372 47.826 0.00 0.00 0.00 3.16
2929 7975 2.172717 GGTATGCAATGTACTCCCCTGT 59.827 50.000 0.00 0.00 0.00 4.00
2930 7976 2.439507 AGGTATGCAATGTACTCCCCTG 59.560 50.000 0.00 0.00 0.00 4.45
2931 7977 2.439507 CAGGTATGCAATGTACTCCCCT 59.560 50.000 0.00 0.00 0.00 4.79
2932 7978 2.851195 CAGGTATGCAATGTACTCCCC 58.149 52.381 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.