Multiple sequence alignment - TraesCS2D01G380900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G380900 chr2D 100.000 4021 0 0 1 4021 484919797 484915777 0.000000e+00 7426.0
1 TraesCS2D01G380900 chr2D 96.464 707 23 2 1 707 101660167 101660871 0.000000e+00 1166.0
2 TraesCS2D01G380900 chr2D 96.581 702 19 4 1 701 70391232 70391929 0.000000e+00 1158.0
3 TraesCS2D01G380900 chr2D 93.714 175 9 2 3397 3569 560959649 560959475 1.110000e-65 261.0
4 TraesCS2D01G380900 chr2D 89.796 196 15 4 3397 3591 300704970 300705161 3.100000e-61 246.0
5 TraesCS2D01G380900 chr2D 93.443 61 2 2 696 754 161898455 161898515 5.540000e-14 89.8
6 TraesCS2D01G380900 chr2D 97.872 47 1 0 747 793 11871794 11871840 9.260000e-12 82.4
7 TraesCS2D01G380900 chr2D 97.872 47 1 0 747 793 629467055 629467009 9.260000e-12 82.4
8 TraesCS2D01G380900 chr2A 87.789 2596 171 69 879 3399 628751622 628749098 0.000000e+00 2904.0
9 TraesCS2D01G380900 chr2A 92.826 460 21 2 3558 4016 628749100 628748652 0.000000e+00 656.0
10 TraesCS2D01G380900 chr2B 89.895 1435 103 24 1952 3363 569529351 569527936 0.000000e+00 1808.0
11 TraesCS2D01G380900 chr2B 86.508 630 36 20 801 1427 569530732 569530149 0.000000e+00 647.0
12 TraesCS2D01G380900 chr2B 91.729 399 18 7 1388 1774 569530266 569529871 1.270000e-149 540.0
13 TraesCS2D01G380900 chr2B 87.554 466 45 9 3558 4016 569527926 569527467 9.900000e-146 527.0
14 TraesCS2D01G380900 chr2B 92.778 180 11 2 3397 3574 41791479 41791658 3.990000e-65 259.0
15 TraesCS2D01G380900 chr2B 92.778 180 11 2 3397 3574 177089638 177089817 3.990000e-65 259.0
16 TraesCS2D01G380900 chr2B 92.308 182 12 2 3397 3576 501435784 501435603 1.430000e-64 257.0
17 TraesCS2D01G380900 chr2B 95.000 60 3 0 696 755 694690238 694690297 1.190000e-15 95.3
18 TraesCS2D01G380900 chr2B 93.443 61 3 1 696 756 251367163 251367104 5.540000e-14 89.8
19 TraesCS2D01G380900 chr3A 97.454 707 16 2 1 707 660861499 660860795 0.000000e+00 1205.0
20 TraesCS2D01G380900 chr3D 97.171 707 17 3 1 707 214959015 214959718 0.000000e+00 1192.0
21 TraesCS2D01G380900 chr3D 96.333 709 20 6 1 705 191558300 191557594 0.000000e+00 1160.0
22 TraesCS2D01G380900 chr3D 95.082 61 2 1 696 756 31867828 31867887 1.190000e-15 95.3
23 TraesCS2D01G380900 chr3D 100.000 48 0 0 747 794 152686779 152686826 5.540000e-14 89.8
24 TraesCS2D01G380900 chr6D 96.888 707 20 2 1 707 464214414 464213710 0.000000e+00 1182.0
25 TraesCS2D01G380900 chr6D 98.333 60 1 0 696 755 86664516 86664575 5.500000e-19 106.0
26 TraesCS2D01G380900 chr6D 94.828 58 3 0 696 753 232765876 232765933 1.540000e-14 91.6
27 TraesCS2D01G380900 chr6D 82.796 93 9 5 669 755 446134041 446134132 4.310000e-10 76.8
28 TraesCS2D01G380900 chr7D 96.888 707 19 3 1 707 114467624 114468327 0.000000e+00 1181.0
29 TraesCS2D01G380900 chr7D 96.605 707 19 3 1 707 151540422 151541123 0.000000e+00 1168.0
30 TraesCS2D01G380900 chr7D 94.231 52 3 0 747 798 52475465 52475414 3.330000e-11 80.5
31 TraesCS2D01G380900 chr5B 96.192 709 23 4 1 707 114687620 114688326 0.000000e+00 1157.0
32 TraesCS2D01G380900 chr5B 93.443 61 4 0 696 756 669932492 669932552 1.540000e-14 91.6
33 TraesCS2D01G380900 chr4D 93.333 180 10 2 3397 3574 42629072 42628893 8.570000e-67 265.0
34 TraesCS2D01G380900 chr4D 92.778 180 11 2 3397 3574 344720726 344720905 3.990000e-65 259.0
35 TraesCS2D01G380900 chr4D 97.872 47 1 0 747 793 4643564 4643518 9.260000e-12 82.4
36 TraesCS2D01G380900 chr5D 92.778 180 11 2 3397 3574 198284391 198284212 3.990000e-65 259.0
37 TraesCS2D01G380900 chr5D 92.778 180 11 2 3397 3574 530125168 530124989 3.990000e-65 259.0
38 TraesCS2D01G380900 chr4B 100.000 44 0 0 747 790 25281602 25281559 9.260000e-12 82.4
39 TraesCS2D01G380900 chr1D 100.000 44 0 0 747 790 240600343 240600300 9.260000e-12 82.4
40 TraesCS2D01G380900 chr1D 95.918 49 1 1 747 794 490563329 490563281 1.200000e-10 78.7
41 TraesCS2D01G380900 chr3B 97.826 46 1 0 747 792 822745817 822745772 3.330000e-11 80.5
42 TraesCS2D01G380900 chr1A 84.146 82 7 4 669 744 575231823 575231904 1.550000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G380900 chr2D 484915777 484919797 4020 True 7426.0 7426 100.0000 1 4021 1 chr2D.!!$R1 4020
1 TraesCS2D01G380900 chr2D 101660167 101660871 704 False 1166.0 1166 96.4640 1 707 1 chr2D.!!$F3 706
2 TraesCS2D01G380900 chr2D 70391232 70391929 697 False 1158.0 1158 96.5810 1 701 1 chr2D.!!$F2 700
3 TraesCS2D01G380900 chr2A 628748652 628751622 2970 True 1780.0 2904 90.3075 879 4016 2 chr2A.!!$R1 3137
4 TraesCS2D01G380900 chr2B 569527467 569530732 3265 True 880.5 1808 88.9215 801 4016 4 chr2B.!!$R3 3215
5 TraesCS2D01G380900 chr3A 660860795 660861499 704 True 1205.0 1205 97.4540 1 707 1 chr3A.!!$R1 706
6 TraesCS2D01G380900 chr3D 214959015 214959718 703 False 1192.0 1192 97.1710 1 707 1 chr3D.!!$F3 706
7 TraesCS2D01G380900 chr3D 191557594 191558300 706 True 1160.0 1160 96.3330 1 705 1 chr3D.!!$R1 704
8 TraesCS2D01G380900 chr6D 464213710 464214414 704 True 1182.0 1182 96.8880 1 707 1 chr6D.!!$R1 706
9 TraesCS2D01G380900 chr7D 114467624 114468327 703 False 1181.0 1181 96.8880 1 707 1 chr7D.!!$F1 706
10 TraesCS2D01G380900 chr7D 151540422 151541123 701 False 1168.0 1168 96.6050 1 707 1 chr7D.!!$F2 706
11 TraesCS2D01G380900 chr5B 114687620 114688326 706 False 1157.0 1157 96.1920 1 707 1 chr5B.!!$F1 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 503 0.107268 GGTAAAGTGTCACGTGGGGT 59.893 55.0 17.00 0.00 0.00 4.95 F
681 689 0.108585 ACAGAACGTGTGGGCAGATT 59.891 50.0 0.00 0.00 38.28 2.40 F
685 693 0.110486 AACGTGTGGGCAGATTCCTT 59.890 50.0 0.00 0.00 0.00 3.36 F
746 754 0.179119 GTGGCAGTTATCGGCGTACT 60.179 55.0 6.85 6.52 35.70 2.73 F
812 820 0.393537 ATGCTCTGTGTAGGCCAAGC 60.394 55.0 5.01 2.49 0.00 4.01 F
2264 2682 0.517755 CGGACCGAGGACGATATCAG 59.482 60.0 8.64 0.00 42.66 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2741 0.034186 AATGTGTCGCCATGACCCAT 60.034 50.000 0.00 0.0 46.01 4.00 R
2335 2759 0.249955 TGTGCGCATCAGGATCTCAA 59.750 50.000 15.91 0.0 0.00 3.02 R
2680 3106 1.134729 CCAATGGCAGTGGTTTATGGC 60.135 52.381 25.07 0.0 42.01 4.40 R
2728 3154 3.434641 AGTCACAACATCGCAGAAGATTG 59.565 43.478 0.00 0.0 43.58 2.67 R
2814 3240 2.161486 CGAACTCTAGCGCACCTGC 61.161 63.158 11.47 0.0 37.78 4.85 R
3546 3982 0.042131 TCCCATGTACTCCCTCCGTT 59.958 55.000 0.00 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
450 458 1.056660 ACAAACATGGACGAGGGTCT 58.943 50.000 0.00 0.00 42.97 3.85
451 459 2.253610 ACAAACATGGACGAGGGTCTA 58.746 47.619 0.00 0.00 42.97 2.59
495 503 0.107268 GGTAAAGTGTCACGTGGGGT 59.893 55.000 17.00 0.00 0.00 4.95
679 687 3.226242 ACAGAACGTGTGGGCAGA 58.774 55.556 0.00 0.00 38.28 4.26
680 688 1.754745 ACAGAACGTGTGGGCAGAT 59.245 52.632 0.00 0.00 38.28 2.90
681 689 0.108585 ACAGAACGTGTGGGCAGATT 59.891 50.000 0.00 0.00 38.28 2.40
682 690 0.798776 CAGAACGTGTGGGCAGATTC 59.201 55.000 0.00 0.00 0.00 2.52
683 691 0.321653 AGAACGTGTGGGCAGATTCC 60.322 55.000 0.00 0.00 0.00 3.01
684 692 0.321653 GAACGTGTGGGCAGATTCCT 60.322 55.000 0.00 0.00 0.00 3.36
685 693 0.110486 AACGTGTGGGCAGATTCCTT 59.890 50.000 0.00 0.00 0.00 3.36
686 694 0.981183 ACGTGTGGGCAGATTCCTTA 59.019 50.000 0.00 0.00 0.00 2.69
687 695 1.349688 ACGTGTGGGCAGATTCCTTAA 59.650 47.619 0.00 0.00 0.00 1.85
688 696 1.737793 CGTGTGGGCAGATTCCTTAAC 59.262 52.381 0.00 0.00 0.00 2.01
689 697 1.737793 GTGTGGGCAGATTCCTTAACG 59.262 52.381 0.00 0.00 0.00 3.18
690 698 0.733150 GTGGGCAGATTCCTTAACGC 59.267 55.000 0.00 0.00 0.00 4.84
691 699 0.393808 TGGGCAGATTCCTTAACGCC 60.394 55.000 0.00 0.00 38.85 5.68
692 700 2.405143 GGCAGATTCCTTAACGCCC 58.595 57.895 0.00 0.00 33.31 6.13
693 701 1.436983 GGCAGATTCCTTAACGCCCG 61.437 60.000 0.00 0.00 33.31 6.13
694 702 2.014594 CAGATTCCTTAACGCCCGC 58.985 57.895 0.00 0.00 0.00 6.13
695 703 0.742990 CAGATTCCTTAACGCCCGCA 60.743 55.000 0.00 0.00 0.00 5.69
696 704 0.743345 AGATTCCTTAACGCCCGCAC 60.743 55.000 0.00 0.00 0.00 5.34
697 705 2.032185 GATTCCTTAACGCCCGCACG 62.032 60.000 0.00 0.00 39.50 5.34
739 747 0.438445 CACACGTGTGGCAGTTATCG 59.562 55.000 35.65 10.61 42.10 2.92
740 748 0.669318 ACACGTGTGGCAGTTATCGG 60.669 55.000 22.71 0.00 34.19 4.18
741 749 1.740296 ACGTGTGGCAGTTATCGGC 60.740 57.895 0.00 0.00 0.00 5.54
742 750 2.798501 CGTGTGGCAGTTATCGGCG 61.799 63.158 0.00 0.00 35.70 6.46
743 751 1.740296 GTGTGGCAGTTATCGGCGT 60.740 57.895 6.85 0.00 35.70 5.68
744 752 0.458889 GTGTGGCAGTTATCGGCGTA 60.459 55.000 6.85 0.00 35.70 4.42
745 753 0.458889 TGTGGCAGTTATCGGCGTAC 60.459 55.000 6.85 4.07 35.70 3.67
746 754 0.179119 GTGGCAGTTATCGGCGTACT 60.179 55.000 6.85 6.52 35.70 2.73
747 755 0.533491 TGGCAGTTATCGGCGTACTT 59.467 50.000 6.85 0.00 35.70 2.24
748 756 1.750206 TGGCAGTTATCGGCGTACTTA 59.250 47.619 6.85 0.00 35.70 2.24
749 757 2.166050 TGGCAGTTATCGGCGTACTTAA 59.834 45.455 6.85 0.00 35.70 1.85
750 758 3.181473 TGGCAGTTATCGGCGTACTTAAT 60.181 43.478 6.85 0.00 35.70 1.40
751 759 3.805971 GGCAGTTATCGGCGTACTTAATT 59.194 43.478 6.85 0.00 35.70 1.40
752 760 4.271776 GGCAGTTATCGGCGTACTTAATTT 59.728 41.667 6.85 0.00 35.70 1.82
753 761 5.463061 GGCAGTTATCGGCGTACTTAATTTA 59.537 40.000 6.85 0.00 35.70 1.40
754 762 6.018832 GGCAGTTATCGGCGTACTTAATTTAA 60.019 38.462 6.85 0.00 35.70 1.52
755 763 7.401080 GCAGTTATCGGCGTACTTAATTTAAA 58.599 34.615 6.85 0.00 0.00 1.52
756 764 7.581600 GCAGTTATCGGCGTACTTAATTTAAAG 59.418 37.037 6.85 0.00 0.00 1.85
757 765 7.581600 CAGTTATCGGCGTACTTAATTTAAAGC 59.418 37.037 6.85 0.00 0.00 3.51
758 766 4.863152 TCGGCGTACTTAATTTAAAGCC 57.137 40.909 6.85 11.46 39.89 4.35
760 768 3.943958 GGCGTACTTAATTTAAAGCCGG 58.056 45.455 0.00 0.00 33.66 6.13
761 769 3.622612 GGCGTACTTAATTTAAAGCCGGA 59.377 43.478 5.05 0.00 33.66 5.14
762 770 4.494690 GGCGTACTTAATTTAAAGCCGGAC 60.495 45.833 5.05 0.00 33.66 4.79
763 771 4.780013 GCGTACTTAATTTAAAGCCGGACG 60.780 45.833 5.05 1.13 0.00 4.79
764 772 3.752412 ACTTAATTTAAAGCCGGACGC 57.248 42.857 5.05 0.00 37.98 5.19
781 789 3.420397 GCTCCTAGCGTCTTCGTTT 57.580 52.632 0.00 0.00 39.49 3.60
782 790 1.711206 GCTCCTAGCGTCTTCGTTTT 58.289 50.000 0.00 0.00 39.49 2.43
783 791 2.872370 GCTCCTAGCGTCTTCGTTTTA 58.128 47.619 0.00 0.00 39.49 1.52
784 792 3.248266 GCTCCTAGCGTCTTCGTTTTAA 58.752 45.455 0.00 0.00 39.49 1.52
785 793 3.676646 GCTCCTAGCGTCTTCGTTTTAAA 59.323 43.478 0.00 0.00 39.49 1.52
786 794 4.151157 GCTCCTAGCGTCTTCGTTTTAAAA 59.849 41.667 0.00 0.00 39.49 1.52
787 795 5.333568 GCTCCTAGCGTCTTCGTTTTAAAAA 60.334 40.000 1.31 0.00 39.49 1.94
809 817 2.584835 AAAATGCTCTGTGTAGGCCA 57.415 45.000 5.01 0.00 0.00 5.36
812 820 0.393537 ATGCTCTGTGTAGGCCAAGC 60.394 55.000 5.01 2.49 0.00 4.01
826 834 2.359214 GGCCAAGCCTTCTTATTACAGC 59.641 50.000 0.00 0.00 46.69 4.40
828 836 3.620488 CCAAGCCTTCTTATTACAGCCA 58.380 45.455 0.00 0.00 0.00 4.75
830 838 4.142381 CCAAGCCTTCTTATTACAGCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
874 882 2.996734 CCGGCCCCAACTGCAATT 60.997 61.111 0.00 0.00 0.00 2.32
875 883 2.262292 CGGCCCCAACTGCAATTG 59.738 61.111 0.00 0.00 0.00 2.32
877 885 2.432972 GCCCCAACTGCAATTGCG 60.433 61.111 24.58 20.34 45.83 4.85
884 892 3.573558 CTGCAATTGCGGTACCGT 58.426 55.556 33.34 13.27 45.83 4.83
993 1001 4.077184 CGCCACTACCCTTCGCCA 62.077 66.667 0.00 0.00 0.00 5.69
1020 1028 4.094646 ATCATCACCACCGCCGCA 62.095 61.111 0.00 0.00 0.00 5.69
1121 1138 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
1122 1139 1.150536 CTCCTCCTCCTCCTCCTCG 59.849 68.421 0.00 0.00 0.00 4.63
1123 1140 2.197324 CCTCCTCCTCCTCCTCGG 59.803 72.222 0.00 0.00 0.00 4.63
1155 1172 4.143333 GAGGAAGCGCGGTGGCTA 62.143 66.667 13.41 0.00 43.93 3.93
1164 1181 4.124351 CGGTGGCTACGCGAGGAA 62.124 66.667 15.93 0.00 0.00 3.36
1752 1814 2.240612 GAACATGGCAGCGGTTCGAC 62.241 60.000 11.89 0.00 32.57 4.20
1786 1848 1.610522 GCTCTGTTCTGTTGGCAATGT 59.389 47.619 1.92 0.00 0.00 2.71
1788 1850 3.635331 CTCTGTTCTGTTGGCAATGTTG 58.365 45.455 1.92 0.00 0.00 3.33
1793 1855 3.883830 TCTGTTGGCAATGTTGTGTTT 57.116 38.095 1.92 0.00 0.00 2.83
1800 1889 5.843673 TGGCAATGTTGTGTTTCTTTCTA 57.156 34.783 0.00 0.00 0.00 2.10
1801 1890 5.587289 TGGCAATGTTGTGTTTCTTTCTAC 58.413 37.500 0.00 0.00 0.00 2.59
1802 1891 4.675114 GGCAATGTTGTGTTTCTTTCTACG 59.325 41.667 0.00 0.00 0.00 3.51
1814 1903 9.384682 GTGTTTCTTTCTACGTAGCTAGATATC 57.615 37.037 18.00 13.63 0.00 1.63
1850 2200 1.399791 GCAATCTGCTGTTGCTCTACC 59.600 52.381 17.30 0.00 46.34 3.18
1860 2210 4.579869 CTGTTGCTCTACCCTACATTGTT 58.420 43.478 0.00 0.00 0.00 2.83
1867 2217 5.816258 GCTCTACCCTACATTGTTAAGAACC 59.184 44.000 0.00 0.00 0.00 3.62
1868 2218 5.969423 TCTACCCTACATTGTTAAGAACCG 58.031 41.667 0.00 0.00 0.00 4.44
1869 2219 4.628963 ACCCTACATTGTTAAGAACCGT 57.371 40.909 0.00 0.00 0.00 4.83
1871 2221 3.687698 CCCTACATTGTTAAGAACCGTGG 59.312 47.826 0.00 0.00 0.00 4.94
1873 2223 2.858745 ACATTGTTAAGAACCGTGGCT 58.141 42.857 0.00 0.00 0.00 4.75
1874 2224 2.552315 ACATTGTTAAGAACCGTGGCTG 59.448 45.455 0.00 0.00 0.00 4.85
1875 2225 2.335316 TTGTTAAGAACCGTGGCTGT 57.665 45.000 0.00 0.00 0.00 4.40
1876 2226 1.588674 TGTTAAGAACCGTGGCTGTG 58.411 50.000 0.00 0.00 0.00 3.66
1879 2232 1.873698 TAAGAACCGTGGCTGTGAAC 58.126 50.000 0.00 0.00 0.00 3.18
1891 2244 4.002982 TGGCTGTGAACTAATGCACTTAG 58.997 43.478 11.86 11.86 42.26 2.18
1894 2247 4.832248 CTGTGAACTAATGCACTTAGGGA 58.168 43.478 15.67 2.50 41.07 4.20
1911 2270 9.017509 CACTTAGGGATAGTACCGATTTGTATA 57.982 37.037 0.00 0.00 0.00 1.47
1917 2277 8.308931 GGGATAGTACCGATTTGTATATGTGAA 58.691 37.037 0.00 0.00 0.00 3.18
1918 2278 9.871238 GGATAGTACCGATTTGTATATGTGAAT 57.129 33.333 0.00 0.00 0.00 2.57
1921 2281 8.365399 AGTACCGATTTGTATATGTGAATGTG 57.635 34.615 0.00 0.00 0.00 3.21
1922 2282 8.201464 AGTACCGATTTGTATATGTGAATGTGA 58.799 33.333 0.00 0.00 0.00 3.58
1923 2283 7.482654 ACCGATTTGTATATGTGAATGTGAG 57.517 36.000 0.00 0.00 0.00 3.51
1924 2284 6.017934 ACCGATTTGTATATGTGAATGTGAGC 60.018 38.462 0.00 0.00 0.00 4.26
1925 2285 6.203530 CCGATTTGTATATGTGAATGTGAGCT 59.796 38.462 0.00 0.00 0.00 4.09
1926 2286 7.384932 CCGATTTGTATATGTGAATGTGAGCTA 59.615 37.037 0.00 0.00 0.00 3.32
1936 2296 5.698089 TGTGAATGTGAGCTAGAACTTTCTG 59.302 40.000 16.55 0.00 38.19 3.02
1937 2297 5.698545 GTGAATGTGAGCTAGAACTTTCTGT 59.301 40.000 16.55 0.00 38.19 3.41
1938 2298 5.698089 TGAATGTGAGCTAGAACTTTCTGTG 59.302 40.000 16.55 0.00 38.19 3.66
1941 2301 5.529791 TGTGAGCTAGAACTTTCTGTGTAC 58.470 41.667 1.52 0.00 38.19 2.90
1942 2302 5.068591 TGTGAGCTAGAACTTTCTGTGTACA 59.931 40.000 1.52 0.00 38.19 2.90
1944 2304 6.090088 GTGAGCTAGAACTTTCTGTGTACATG 59.910 42.308 0.00 0.00 38.19 3.21
1971 2381 8.545420 GTTGTATATAAATCCAAGTGTACCGTG 58.455 37.037 0.00 0.00 0.00 4.94
2088 2498 5.822519 TCAAGACATGGCAGGTCAATATAAC 59.177 40.000 30.92 5.20 37.74 1.89
2148 2558 6.238130 GCTAACTGCTAAGCCAGTATAAACAC 60.238 42.308 0.00 0.00 44.86 3.32
2149 2559 5.160607 ACTGCTAAGCCAGTATAAACACA 57.839 39.130 0.00 0.00 43.86 3.72
2150 2560 4.935808 ACTGCTAAGCCAGTATAAACACAC 59.064 41.667 0.00 0.00 43.86 3.82
2152 2562 4.935205 TGCTAAGCCAGTATAAACACACAG 59.065 41.667 0.00 0.00 0.00 3.66
2154 2564 6.103997 GCTAAGCCAGTATAAACACACAGTA 58.896 40.000 0.00 0.00 0.00 2.74
2155 2565 6.035758 GCTAAGCCAGTATAAACACACAGTAC 59.964 42.308 0.00 0.00 0.00 2.73
2164 2582 2.340210 ACACACAGTACCACATTGCA 57.660 45.000 0.00 0.00 0.00 4.08
2165 2583 2.862541 ACACACAGTACCACATTGCAT 58.137 42.857 0.00 0.00 0.00 3.96
2169 2587 4.022935 CACACAGTACCACATTGCATTTCT 60.023 41.667 0.00 0.00 0.00 2.52
2205 2623 2.615227 TAGGGACTACGGAGGACGGC 62.615 65.000 0.00 0.00 44.39 5.68
2260 2678 1.524621 GGACGGACCGAGGACGATA 60.525 63.158 23.38 0.00 42.66 2.92
2264 2682 0.517755 CGGACCGAGGACGATATCAG 59.482 60.000 8.64 0.00 42.66 2.90
2274 2692 3.452627 AGGACGATATCAGAAAGGCAAGT 59.547 43.478 3.12 0.00 0.00 3.16
2276 2694 4.271291 GGACGATATCAGAAAGGCAAGTTC 59.729 45.833 3.12 0.00 0.00 3.01
2277 2695 3.865745 ACGATATCAGAAAGGCAAGTTCG 59.134 43.478 3.12 0.00 0.00 3.95
2292 2716 2.222027 AGTTCGGAAACTTCAAGCCAG 58.778 47.619 0.00 0.00 43.28 4.85
2299 2723 3.495100 GGAAACTTCAAGCCAGAGTCAGA 60.495 47.826 0.00 0.00 0.00 3.27
2300 2724 4.322567 GAAACTTCAAGCCAGAGTCAGAT 58.677 43.478 0.00 0.00 0.00 2.90
2315 2739 4.978099 AGTCAGATTTTCAGTGATGTGGT 58.022 39.130 0.00 0.00 0.00 4.16
2316 2740 4.999950 AGTCAGATTTTCAGTGATGTGGTC 59.000 41.667 0.00 0.00 0.00 4.02
2317 2741 4.756642 GTCAGATTTTCAGTGATGTGGTCA 59.243 41.667 0.00 0.00 0.00 4.02
2318 2742 5.413833 GTCAGATTTTCAGTGATGTGGTCAT 59.586 40.000 0.00 0.00 39.48 3.06
2319 2743 5.413523 TCAGATTTTCAGTGATGTGGTCATG 59.586 40.000 0.00 0.00 39.48 3.07
2320 2744 4.703575 AGATTTTCAGTGATGTGGTCATGG 59.296 41.667 0.00 0.00 39.48 3.66
2321 2745 2.495155 TTCAGTGATGTGGTCATGGG 57.505 50.000 0.00 0.00 39.48 4.00
2322 2746 1.361204 TCAGTGATGTGGTCATGGGT 58.639 50.000 0.00 0.00 39.48 4.51
2330 2754 2.297129 TGGTCATGGGTCATGGCGA 61.297 57.895 7.88 1.01 46.13 5.54
2332 2756 2.535485 GGTCATGGGTCATGGCGACA 62.535 60.000 0.00 0.00 46.13 4.35
2350 2774 2.543012 GACACATTGAGATCCTGATGCG 59.457 50.000 0.00 0.00 0.00 4.73
2353 2777 1.263484 CATTGAGATCCTGATGCGCAC 59.737 52.381 14.90 7.75 0.00 5.34
2364 2788 3.061093 ATGCGCACATCTGAGACTG 57.939 52.632 14.90 0.00 0.00 3.51
2429 2853 4.497291 TGTTCCACCTGTAACAGAAACT 57.503 40.909 0.00 0.00 32.44 2.66
2647 3073 4.221703 AGTCACTGCTGCTTAACTCTACAT 59.778 41.667 0.00 0.00 0.00 2.29
2659 3085 8.414003 TGCTTAACTCTACATTGGTATCTAGTG 58.586 37.037 0.00 0.00 0.00 2.74
2660 3086 8.414778 GCTTAACTCTACATTGGTATCTAGTGT 58.585 37.037 0.00 0.00 0.00 3.55
2674 3100 3.995636 TCTAGTGTAAATCCCAGCCTCT 58.004 45.455 0.00 0.00 0.00 3.69
2687 3113 0.698238 AGCCTCTGGTGTGCCATAAA 59.302 50.000 0.00 0.00 45.05 1.40
2715 3141 3.679389 CCATTGGCTTGACTTCTGTACT 58.321 45.455 0.00 0.00 0.00 2.73
2716 3142 4.832248 CCATTGGCTTGACTTCTGTACTA 58.168 43.478 0.00 0.00 0.00 1.82
2717 3143 4.631813 CCATTGGCTTGACTTCTGTACTAC 59.368 45.833 0.00 0.00 0.00 2.73
2718 3144 5.482908 CATTGGCTTGACTTCTGTACTACT 58.517 41.667 0.00 0.00 0.00 2.57
2814 3240 0.240945 GTGAGCCCAACATTGAACCG 59.759 55.000 0.00 0.00 0.00 4.44
2862 3288 6.035843 CAGAAGCGCACCATGTTATTAATTT 58.964 36.000 11.47 0.00 0.00 1.82
2898 3329 9.932207 ATTTCTTCTCAAACATGCATTTAATCA 57.068 25.926 0.00 0.00 0.00 2.57
3005 3437 7.722949 ATGTGATGTTTGTCAAGGGATTAAT 57.277 32.000 0.00 0.00 0.00 1.40
3017 3449 3.545703 AGGGATTAATACAGTGCACAGC 58.454 45.455 21.04 0.00 0.00 4.40
3025 3457 1.233019 ACAGTGCACAGCTAAAGCAG 58.767 50.000 21.04 0.00 45.16 4.24
3030 3462 2.549754 GTGCACAGCTAAAGCAGAAGAA 59.450 45.455 13.17 0.00 45.16 2.52
3031 3463 2.810274 TGCACAGCTAAAGCAGAAGAAG 59.190 45.455 4.54 0.00 45.16 2.85
3032 3464 3.070018 GCACAGCTAAAGCAGAAGAAGA 58.930 45.455 4.54 0.00 45.16 2.87
3056 3488 3.753272 TGAGCAACATTCAGCCTTAGTTC 59.247 43.478 0.00 0.00 0.00 3.01
3066 3498 4.744570 TCAGCCTTAGTTCAACGTCTATG 58.255 43.478 0.00 0.00 0.00 2.23
3111 3543 4.483476 ACTATTCCAGTTTTGTCGCAAC 57.517 40.909 0.00 0.00 31.59 4.17
3289 3725 9.252962 GCCTTCAAATATTTTCACCATTCATAG 57.747 33.333 0.00 0.00 0.00 2.23
3396 3832 3.140623 GGTTGATTTTGCCATGCAGTTT 58.859 40.909 0.00 0.00 40.61 2.66
3397 3833 4.202295 TGGTTGATTTTGCCATGCAGTTTA 60.202 37.500 0.00 0.00 40.61 2.01
3398 3834 4.152223 GGTTGATTTTGCCATGCAGTTTAC 59.848 41.667 0.00 0.00 40.61 2.01
3399 3835 4.870123 TGATTTTGCCATGCAGTTTACT 57.130 36.364 0.00 0.00 40.61 2.24
3400 3836 4.808558 TGATTTTGCCATGCAGTTTACTC 58.191 39.130 0.00 0.00 40.61 2.59
3401 3837 3.658757 TTTTGCCATGCAGTTTACTCC 57.341 42.857 0.00 0.00 40.61 3.85
3402 3838 1.544724 TTGCCATGCAGTTTACTCCC 58.455 50.000 0.00 0.00 40.61 4.30
3403 3839 0.698238 TGCCATGCAGTTTACTCCCT 59.302 50.000 0.00 0.00 33.32 4.20
3404 3840 1.340017 TGCCATGCAGTTTACTCCCTC 60.340 52.381 0.00 0.00 33.32 4.30
3405 3841 2.019156 GCCATGCAGTTTACTCCCTCC 61.019 57.143 0.00 0.00 0.00 4.30
3406 3842 1.656652 CATGCAGTTTACTCCCTCCG 58.343 55.000 0.00 0.00 0.00 4.63
3407 3843 1.066143 CATGCAGTTTACTCCCTCCGT 60.066 52.381 0.00 0.00 0.00 4.69
3408 3844 1.053424 TGCAGTTTACTCCCTCCGTT 58.947 50.000 0.00 0.00 0.00 4.44
3409 3845 1.001633 TGCAGTTTACTCCCTCCGTTC 59.998 52.381 0.00 0.00 0.00 3.95
3410 3846 1.675116 GCAGTTTACTCCCTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
3411 3847 1.900486 CAGTTTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
3412 3848 3.094572 CAGTTTACTCCCTCCGTTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
3413 3849 3.512724 CAGTTTACTCCCTCCGTTCCTAA 59.487 47.826 0.00 0.00 0.00 2.69
3414 3850 4.020839 CAGTTTACTCCCTCCGTTCCTAAA 60.021 45.833 0.00 0.00 0.00 1.85
3415 3851 4.781621 AGTTTACTCCCTCCGTTCCTAAAT 59.218 41.667 0.00 0.00 0.00 1.40
3416 3852 5.960202 AGTTTACTCCCTCCGTTCCTAAATA 59.040 40.000 0.00 0.00 0.00 1.40
3417 3853 6.614496 AGTTTACTCCCTCCGTTCCTAAATAT 59.386 38.462 0.00 0.00 0.00 1.28
3418 3854 7.126879 AGTTTACTCCCTCCGTTCCTAAATATT 59.873 37.037 0.00 0.00 0.00 1.28
3419 3855 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3420 3856 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3421 3857 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3422 3858 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3423 3859 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3424 3860 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3425 3861 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3426 3862 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3427 3863 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3428 3864 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3429 3865 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3430 3866 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3440 3876 9.793259 ATATTTGTCTTTCTAGAGGTTTCAACA 57.207 29.630 0.00 0.00 0.00 3.33
3441 3877 7.931578 TTTGTCTTTCTAGAGGTTTCAACAA 57.068 32.000 0.00 0.00 0.00 2.83
3442 3878 7.553881 TTGTCTTTCTAGAGGTTTCAACAAG 57.446 36.000 0.00 0.00 0.00 3.16
3443 3879 6.650120 TGTCTTTCTAGAGGTTTCAACAAGT 58.350 36.000 0.00 0.00 0.00 3.16
3444 3880 6.538742 TGTCTTTCTAGAGGTTTCAACAAGTG 59.461 38.462 0.00 0.00 0.00 3.16
3445 3881 6.761714 GTCTTTCTAGAGGTTTCAACAAGTGA 59.238 38.462 0.00 0.00 0.00 3.41
3446 3882 6.761714 TCTTTCTAGAGGTTTCAACAAGTGAC 59.238 38.462 0.00 0.00 35.39 3.67
3447 3883 5.871396 TCTAGAGGTTTCAACAAGTGACT 57.129 39.130 0.00 0.00 35.39 3.41
3448 3884 6.971726 TCTAGAGGTTTCAACAAGTGACTA 57.028 37.500 0.00 0.00 35.39 2.59
3449 3885 7.540474 TCTAGAGGTTTCAACAAGTGACTAT 57.460 36.000 0.00 0.00 35.39 2.12
3450 3886 8.645814 TCTAGAGGTTTCAACAAGTGACTATA 57.354 34.615 0.00 0.00 35.39 1.31
3451 3887 9.256228 TCTAGAGGTTTCAACAAGTGACTATAT 57.744 33.333 0.00 0.00 35.39 0.86
3454 3890 7.974501 AGAGGTTTCAACAAGTGACTATATACG 59.025 37.037 0.00 0.00 35.39 3.06
3455 3891 7.039882 AGGTTTCAACAAGTGACTATATACGG 58.960 38.462 0.00 0.00 35.39 4.02
3456 3892 7.037438 GGTTTCAACAAGTGACTATATACGGA 58.963 38.462 0.00 0.00 35.39 4.69
3457 3893 7.546667 GGTTTCAACAAGTGACTATATACGGAA 59.453 37.037 0.00 0.00 35.39 4.30
3458 3894 8.378421 GTTTCAACAAGTGACTATATACGGAAC 58.622 37.037 0.00 0.00 35.39 3.62
3459 3895 7.160547 TCAACAAGTGACTATATACGGAACA 57.839 36.000 0.00 0.00 0.00 3.18
3460 3896 7.604549 TCAACAAGTGACTATATACGGAACAA 58.395 34.615 0.00 0.00 0.00 2.83
3461 3897 8.089597 TCAACAAGTGACTATATACGGAACAAA 58.910 33.333 0.00 0.00 0.00 2.83
3462 3898 8.714179 CAACAAGTGACTATATACGGAACAAAA 58.286 33.333 0.00 0.00 0.00 2.44
3463 3899 9.444600 AACAAGTGACTATATACGGAACAAAAT 57.555 29.630 0.00 0.00 0.00 1.82
3464 3900 8.879759 ACAAGTGACTATATACGGAACAAAATG 58.120 33.333 0.00 0.00 0.00 2.32
3465 3901 9.093970 CAAGTGACTATATACGGAACAAAATGA 57.906 33.333 0.00 0.00 0.00 2.57
3466 3902 8.873215 AGTGACTATATACGGAACAAAATGAG 57.127 34.615 0.00 0.00 0.00 2.90
3467 3903 8.475639 AGTGACTATATACGGAACAAAATGAGT 58.524 33.333 0.00 0.00 0.00 3.41
3468 3904 8.540492 GTGACTATATACGGAACAAAATGAGTG 58.460 37.037 0.00 0.00 0.00 3.51
3469 3905 7.709182 TGACTATATACGGAACAAAATGAGTGG 59.291 37.037 0.00 0.00 0.00 4.00
3470 3906 7.788026 ACTATATACGGAACAAAATGAGTGGA 58.212 34.615 0.00 0.00 0.00 4.02
3471 3907 8.429641 ACTATATACGGAACAAAATGAGTGGAT 58.570 33.333 0.00 0.00 0.00 3.41
3472 3908 7.730364 ATATACGGAACAAAATGAGTGGATC 57.270 36.000 0.00 0.00 0.00 3.36
3473 3909 4.021102 ACGGAACAAAATGAGTGGATCT 57.979 40.909 0.00 0.00 0.00 2.75
3474 3910 5.160607 ACGGAACAAAATGAGTGGATCTA 57.839 39.130 0.00 0.00 0.00 1.98
3475 3911 4.935808 ACGGAACAAAATGAGTGGATCTAC 59.064 41.667 0.00 0.00 0.00 2.59
3476 3912 4.935205 CGGAACAAAATGAGTGGATCTACA 59.065 41.667 12.16 0.00 0.00 2.74
3477 3913 5.163854 CGGAACAAAATGAGTGGATCTACAC 60.164 44.000 12.16 5.82 41.63 2.90
3509 3945 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3511 3947 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
3512 3948 8.733458 TGTCTATATACATCCGTATGTGGTAAC 58.267 37.037 3.56 0.00 45.99 2.50
3513 3949 8.186821 GTCTATATACATCCGTATGTGGTAACC 58.813 40.741 3.56 0.00 45.99 2.85
3514 3950 6.921486 ATATACATCCGTATGTGGTAACCA 57.079 37.500 3.56 0.00 45.99 3.67
3515 3951 5.818678 ATACATCCGTATGTGGTAACCAT 57.181 39.130 3.56 0.00 45.99 3.55
3516 3952 4.497291 ACATCCGTATGTGGTAACCATT 57.503 40.909 0.00 0.00 44.79 3.16
3517 3953 4.850680 ACATCCGTATGTGGTAACCATTT 58.149 39.130 0.00 0.00 44.79 2.32
3518 3954 4.638421 ACATCCGTATGTGGTAACCATTTG 59.362 41.667 0.00 0.00 44.79 2.32
3519 3955 4.554960 TCCGTATGTGGTAACCATTTGA 57.445 40.909 0.00 0.00 35.28 2.69
3520 3956 4.907809 TCCGTATGTGGTAACCATTTGAA 58.092 39.130 0.00 0.00 35.28 2.69
3521 3957 5.314529 TCCGTATGTGGTAACCATTTGAAA 58.685 37.500 0.00 0.00 35.28 2.69
3522 3958 5.946972 TCCGTATGTGGTAACCATTTGAAAT 59.053 36.000 0.00 0.00 35.28 2.17
3523 3959 6.094325 TCCGTATGTGGTAACCATTTGAAATC 59.906 38.462 0.00 0.00 35.28 2.17
3524 3960 6.094881 CCGTATGTGGTAACCATTTGAAATCT 59.905 38.462 0.00 0.00 35.28 2.40
3525 3961 7.362574 CCGTATGTGGTAACCATTTGAAATCTT 60.363 37.037 0.00 0.00 35.28 2.40
3526 3962 8.026607 CGTATGTGGTAACCATTTGAAATCTTT 58.973 33.333 0.00 0.00 35.28 2.52
3554 3990 6.769134 AAACAAATATTTAGGAACGGAGGG 57.231 37.500 0.00 0.00 0.00 4.30
3555 3991 5.703730 ACAAATATTTAGGAACGGAGGGA 57.296 39.130 0.00 0.00 0.00 4.20
3556 3992 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3641 4077 4.529769 ACCATGAGAGATTGAGAGTGAACA 59.470 41.667 0.00 0.00 0.00 3.18
3728 4170 1.009675 GCACAGCACAAGGTGAACG 60.010 57.895 0.00 0.00 45.95 3.95
3740 4182 0.179124 GGTGAACGTTGCCTGCAAAA 60.179 50.000 5.00 0.00 37.70 2.44
3786 4228 3.376546 GTGAGAACAGATGCTGATTTCCC 59.623 47.826 0.82 0.00 35.18 3.97
3828 4270 7.624549 ACAGGAGATAGAACATACAACACATT 58.375 34.615 0.00 0.00 0.00 2.71
3853 4295 8.612486 TGATGGAGTTAACCAACCTATTACTA 57.388 34.615 0.88 0.00 43.47 1.82
3996 4438 4.401925 AGAAGGAACAGAAATTGGGACAG 58.598 43.478 0.00 0.00 42.39 3.51
4005 4447 4.082081 CAGAAATTGGGACAGCAGCAATAA 60.082 41.667 0.00 0.00 42.39 1.40
4016 4458 6.246420 ACAGCAGCAATAACTTGTTCTAAG 57.754 37.500 0.00 0.00 34.69 2.18
4017 4459 5.997746 ACAGCAGCAATAACTTGTTCTAAGA 59.002 36.000 0.00 0.00 34.69 2.10
4018 4460 6.148480 ACAGCAGCAATAACTTGTTCTAAGAG 59.852 38.462 0.00 0.00 34.69 2.85
4019 4461 5.645497 AGCAGCAATAACTTGTTCTAAGAGG 59.355 40.000 0.00 0.00 34.69 3.69
4020 4462 5.674820 GCAGCAATAACTTGTTCTAAGAGGC 60.675 44.000 0.00 0.00 34.69 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
332 340 3.228188 TGCCATCTCAGGTCAAAGTTT 57.772 42.857 0.00 0.00 0.00 2.66
675 683 2.014594 CGGGCGTTAAGGAATCTGC 58.985 57.895 0.00 0.00 0.00 4.26
676 684 0.742990 TGCGGGCGTTAAGGAATCTG 60.743 55.000 0.00 0.00 0.00 2.90
677 685 0.743345 GTGCGGGCGTTAAGGAATCT 60.743 55.000 0.00 0.00 0.00 2.40
678 686 1.719709 GTGCGGGCGTTAAGGAATC 59.280 57.895 0.00 0.00 0.00 2.52
679 687 2.104253 CGTGCGGGCGTTAAGGAAT 61.104 57.895 0.00 0.00 0.00 3.01
680 688 2.739287 CGTGCGGGCGTTAAGGAA 60.739 61.111 0.00 0.00 0.00 3.36
681 689 3.993584 ACGTGCGGGCGTTAAGGA 61.994 61.111 0.00 0.00 43.04 3.36
682 690 3.784412 CACGTGCGGGCGTTAAGG 61.784 66.667 0.82 0.00 43.83 2.69
683 691 3.039588 ACACGTGCGGGCGTTAAG 61.040 61.111 17.22 0.00 43.83 1.85
684 692 3.339464 CACACGTGCGGGCGTTAA 61.339 61.111 17.22 0.00 43.83 2.01
692 700 3.027170 GAATCTGCCCACACGTGCG 62.027 63.158 17.22 5.90 0.00 5.34
693 701 2.690778 GGAATCTGCCCACACGTGC 61.691 63.158 17.22 1.22 0.00 5.34
694 702 0.606401 AAGGAATCTGCCCACACGTG 60.606 55.000 15.48 15.48 0.00 4.49
695 703 0.981183 TAAGGAATCTGCCCACACGT 59.019 50.000 0.00 0.00 0.00 4.49
696 704 1.737793 GTTAAGGAATCTGCCCACACG 59.262 52.381 0.00 0.00 0.00 4.49
697 705 1.737793 CGTTAAGGAATCTGCCCACAC 59.262 52.381 0.00 0.00 0.00 3.82
698 706 1.948611 GCGTTAAGGAATCTGCCCACA 60.949 52.381 0.00 0.00 0.00 4.17
699 707 0.733150 GCGTTAAGGAATCTGCCCAC 59.267 55.000 0.00 0.00 0.00 4.61
700 708 0.393808 GGCGTTAAGGAATCTGCCCA 60.394 55.000 0.00 0.00 36.51 5.36
701 709 2.405143 GGCGTTAAGGAATCTGCCC 58.595 57.895 0.00 0.00 36.51 5.36
702 710 0.393808 TGGGCGTTAAGGAATCTGCC 60.394 55.000 0.00 0.00 41.72 4.85
734 742 6.947258 GGCTTTAAATTAAGTACGCCGATAA 58.053 36.000 0.00 0.00 0.00 1.75
735 743 6.529463 GGCTTTAAATTAAGTACGCCGATA 57.471 37.500 0.00 0.00 0.00 2.92
736 744 5.413969 GGCTTTAAATTAAGTACGCCGAT 57.586 39.130 0.00 0.00 0.00 4.18
737 745 4.863152 GGCTTTAAATTAAGTACGCCGA 57.137 40.909 0.00 0.00 0.00 5.54
739 747 3.622612 TCCGGCTTTAAATTAAGTACGCC 59.377 43.478 0.00 1.74 0.00 5.68
740 748 4.581493 GTCCGGCTTTAAATTAAGTACGC 58.419 43.478 0.00 0.00 0.00 4.42
741 749 4.780013 GCGTCCGGCTTTAAATTAAGTACG 60.780 45.833 0.00 0.00 39.11 3.67
742 750 4.581493 GCGTCCGGCTTTAAATTAAGTAC 58.419 43.478 0.00 0.00 39.11 2.73
743 751 4.863152 GCGTCCGGCTTTAAATTAAGTA 57.137 40.909 0.00 0.00 39.11 2.24
744 752 3.752412 GCGTCCGGCTTTAAATTAAGT 57.248 42.857 0.00 0.00 39.11 2.24
763 771 1.711206 AAAACGAAGACGCTAGGAGC 58.289 50.000 0.00 0.00 43.96 4.70
764 772 5.834239 TTTTAAAACGAAGACGCTAGGAG 57.166 39.130 0.00 0.00 43.96 3.69
789 797 2.875296 TGGCCTACACAGAGCATTTTT 58.125 42.857 3.32 0.00 0.00 1.94
790 798 2.584835 TGGCCTACACAGAGCATTTT 57.415 45.000 3.32 0.00 0.00 1.82
791 799 2.440409 CTTGGCCTACACAGAGCATTT 58.560 47.619 3.32 0.00 0.00 2.32
792 800 1.952367 GCTTGGCCTACACAGAGCATT 60.952 52.381 3.32 0.00 0.00 3.56
793 801 0.393537 GCTTGGCCTACACAGAGCAT 60.394 55.000 3.32 0.00 0.00 3.79
794 802 1.003355 GCTTGGCCTACACAGAGCA 60.003 57.895 3.32 0.00 0.00 4.26
795 803 1.746991 GGCTTGGCCTACACAGAGC 60.747 63.158 3.32 2.01 46.69 4.09
796 804 4.625800 GGCTTGGCCTACACAGAG 57.374 61.111 3.32 0.00 46.69 3.35
809 817 4.702131 CAGTTGGCTGTAATAAGAAGGCTT 59.298 41.667 0.00 0.00 37.92 4.35
812 820 3.947834 CCCAGTTGGCTGTAATAAGAAGG 59.052 47.826 0.00 0.00 41.02 3.46
826 834 1.411977 TGTGAACATTTGCCCAGTTGG 59.588 47.619 0.00 0.00 37.09 3.77
828 836 3.902881 TTTGTGAACATTTGCCCAGTT 57.097 38.095 0.00 0.00 0.00 3.16
830 838 2.988493 CGATTTGTGAACATTTGCCCAG 59.012 45.455 0.00 0.00 0.00 4.45
841 849 3.059386 GGCGGCCCGATTTGTGAA 61.059 61.111 7.68 0.00 0.00 3.18
862 870 0.109319 GTACCGCAATTGCAGTTGGG 60.109 55.000 28.77 25.90 42.21 4.12
868 876 1.020333 GGTACGGTACCGCAATTGCA 61.020 55.000 33.62 8.07 44.19 4.08
993 1001 0.921166 TGGTGATGATCATGGCTGGT 59.079 50.000 14.30 0.00 0.00 4.00
1020 1028 1.757340 GGAGGAGACGGACGGGAAT 60.757 63.158 0.00 0.00 0.00 3.01
1077 1085 3.753434 CGGACGAGCTGGAGCACT 61.753 66.667 1.44 0.00 45.16 4.40
1080 1088 4.500116 GACCGGACGAGCTGGAGC 62.500 72.222 9.46 0.00 46.81 4.70
1450 1512 4.021925 AGGCGGAGGTGGAGCAAC 62.022 66.667 0.00 0.00 0.00 4.17
1451 1513 4.020617 CAGGCGGAGGTGGAGCAA 62.021 66.667 0.00 0.00 0.00 3.91
1513 1575 3.827898 CACCTCGACCTCCTCCGC 61.828 72.222 0.00 0.00 0.00 5.54
1514 1576 2.045242 TCACCTCGACCTCCTCCG 60.045 66.667 0.00 0.00 0.00 4.63
1635 1697 4.514577 ATCGCCCGCACTTCCTCG 62.515 66.667 0.00 0.00 0.00 4.63
1740 1802 1.372499 TAGTGTGTCGAACCGCTGC 60.372 57.895 8.48 0.00 0.00 5.25
1786 1848 6.973843 TCTAGCTACGTAGAAAGAAACACAA 58.026 36.000 26.53 1.99 0.00 3.33
1788 1850 9.384682 GATATCTAGCTACGTAGAAAGAAACAC 57.615 37.037 26.53 14.29 32.72 3.32
1793 1855 7.603404 GTGAGGATATCTAGCTACGTAGAAAGA 59.397 40.741 26.53 23.89 32.72 2.52
1800 1889 3.754323 GCAGTGAGGATATCTAGCTACGT 59.246 47.826 2.05 0.00 0.00 3.57
1801 1890 3.753797 TGCAGTGAGGATATCTAGCTACG 59.246 47.826 2.05 0.00 0.00 3.51
1802 1891 5.242838 ACTTGCAGTGAGGATATCTAGCTAC 59.757 44.000 2.05 0.00 0.00 3.58
1850 2200 3.126343 GCCACGGTTCTTAACAATGTAGG 59.874 47.826 0.00 0.00 0.00 3.18
1860 2210 1.414919 AGTTCACAGCCACGGTTCTTA 59.585 47.619 0.00 0.00 0.00 2.10
1867 2217 1.135972 GTGCATTAGTTCACAGCCACG 60.136 52.381 0.00 0.00 33.63 4.94
1868 2218 2.154462 AGTGCATTAGTTCACAGCCAC 58.846 47.619 0.00 0.00 35.76 5.01
1869 2219 2.566833 AGTGCATTAGTTCACAGCCA 57.433 45.000 0.00 0.00 35.76 4.75
1871 2221 3.375299 CCCTAAGTGCATTAGTTCACAGC 59.625 47.826 12.12 0.00 39.50 4.40
1873 2223 4.901197 TCCCTAAGTGCATTAGTTCACA 57.099 40.909 12.12 0.00 39.50 3.58
1874 2224 6.583562 ACTATCCCTAAGTGCATTAGTTCAC 58.416 40.000 12.12 0.00 39.50 3.18
1875 2225 6.808321 ACTATCCCTAAGTGCATTAGTTCA 57.192 37.500 12.12 1.13 39.50 3.18
1876 2226 7.153315 GGTACTATCCCTAAGTGCATTAGTTC 58.847 42.308 12.12 0.00 39.50 3.01
1879 2232 5.475909 TCGGTACTATCCCTAAGTGCATTAG 59.524 44.000 0.00 0.00 40.63 1.73
1891 2244 7.833786 TCACATATACAAATCGGTACTATCCC 58.166 38.462 0.00 0.00 0.00 3.85
1911 2270 6.370994 CAGAAAGTTCTAGCTCACATTCACAT 59.629 38.462 0.00 0.00 35.34 3.21
1917 2277 5.220710 ACACAGAAAGTTCTAGCTCACAT 57.779 39.130 0.00 0.00 35.34 3.21
1918 2278 4.672587 ACACAGAAAGTTCTAGCTCACA 57.327 40.909 0.00 0.00 35.34 3.58
1919 2279 5.529791 TGTACACAGAAAGTTCTAGCTCAC 58.470 41.667 0.00 0.00 35.34 3.51
1921 2281 5.578727 CCATGTACACAGAAAGTTCTAGCTC 59.421 44.000 0.00 0.00 35.34 4.09
1922 2282 5.012148 ACCATGTACACAGAAAGTTCTAGCT 59.988 40.000 0.00 0.00 35.34 3.32
1923 2283 5.238583 ACCATGTACACAGAAAGTTCTAGC 58.761 41.667 0.00 0.00 35.34 3.42
1924 2284 6.706270 ACAACCATGTACACAGAAAGTTCTAG 59.294 38.462 0.00 0.00 38.24 2.43
1925 2285 6.588204 ACAACCATGTACACAGAAAGTTCTA 58.412 36.000 0.00 0.00 38.24 2.10
1926 2286 5.437060 ACAACCATGTACACAGAAAGTTCT 58.563 37.500 0.00 0.00 38.24 3.01
1942 2302 9.569122 GGTACACTTGGATTTATATACAACCAT 57.431 33.333 0.00 0.00 31.25 3.55
1944 2304 7.712205 ACGGTACACTTGGATTTATATACAACC 59.288 37.037 0.00 0.00 31.25 3.77
1971 2381 0.102481 CAAGGCTTCCTGCATGATGC 59.898 55.000 17.86 17.86 45.15 3.91
2135 2545 4.390909 GTGGTACTGTGTGTTTATACTGGC 59.609 45.833 0.00 0.00 0.00 4.85
2148 2558 4.771590 AGAAATGCAATGTGGTACTGTG 57.228 40.909 0.00 0.00 0.00 3.66
2149 2559 4.584325 ACAAGAAATGCAATGTGGTACTGT 59.416 37.500 0.00 0.00 0.00 3.55
2150 2560 5.125100 ACAAGAAATGCAATGTGGTACTG 57.875 39.130 0.00 0.00 0.00 2.74
2152 2562 5.333263 GCAAACAAGAAATGCAATGTGGTAC 60.333 40.000 0.00 0.00 39.81 3.34
2154 2564 3.560896 GCAAACAAGAAATGCAATGTGGT 59.439 39.130 0.00 0.00 39.81 4.16
2155 2565 3.560481 TGCAAACAAGAAATGCAATGTGG 59.440 39.130 0.00 0.00 46.23 4.17
2164 2582 2.557924 TCGATGCCTGCAAACAAGAAAT 59.442 40.909 0.00 0.00 0.00 2.17
2165 2583 1.952990 TCGATGCCTGCAAACAAGAAA 59.047 42.857 0.00 0.00 0.00 2.52
2169 2587 2.016318 CCTATCGATGCCTGCAAACAA 58.984 47.619 8.54 0.00 0.00 2.83
2196 2614 1.519455 CGTCATCAAGCCGTCCTCC 60.519 63.158 0.00 0.00 0.00 4.30
2202 2620 1.874019 CTCCGACGTCATCAAGCCG 60.874 63.158 17.16 0.00 0.00 5.52
2205 2623 1.402259 AGTAGCTCCGACGTCATCAAG 59.598 52.381 17.16 7.66 0.00 3.02
2206 2624 1.400846 GAGTAGCTCCGACGTCATCAA 59.599 52.381 17.16 0.00 0.00 2.57
2260 2678 2.859165 TCCGAACTTGCCTTTCTGAT 57.141 45.000 0.00 0.00 0.00 2.90
2274 2692 2.158813 ACTCTGGCTTGAAGTTTCCGAA 60.159 45.455 0.00 0.00 0.00 4.30
2276 2694 1.801178 GACTCTGGCTTGAAGTTTCCG 59.199 52.381 0.00 0.00 0.00 4.30
2277 2695 2.810852 CTGACTCTGGCTTGAAGTTTCC 59.189 50.000 0.00 0.00 0.00 3.13
2284 2708 4.202398 ACTGAAAATCTGACTCTGGCTTGA 60.202 41.667 0.00 0.00 0.00 3.02
2292 2716 4.999950 ACCACATCACTGAAAATCTGACTC 59.000 41.667 0.00 0.00 0.00 3.36
2299 2723 3.765511 CCCATGACCACATCACTGAAAAT 59.234 43.478 0.00 0.00 41.24 1.82
2300 2724 3.156293 CCCATGACCACATCACTGAAAA 58.844 45.455 0.00 0.00 41.24 2.29
2315 2739 3.132143 ATGTGTCGCCATGACCCATGA 62.132 52.381 8.38 0.00 43.01 3.07
2316 2740 0.749091 ATGTGTCGCCATGACCCATG 60.749 55.000 0.00 0.00 43.01 3.66
2317 2741 0.034186 AATGTGTCGCCATGACCCAT 60.034 50.000 0.00 0.00 46.01 4.00
2322 2746 2.554142 GATCTCAATGTGTCGCCATGA 58.446 47.619 0.00 0.00 0.00 3.07
2330 2754 2.558378 CGCATCAGGATCTCAATGTGT 58.442 47.619 0.00 0.00 0.00 3.72
2332 2756 1.134310 TGCGCATCAGGATCTCAATGT 60.134 47.619 5.66 0.00 0.00 2.71
2335 2759 0.249955 TGTGCGCATCAGGATCTCAA 59.750 50.000 15.91 0.00 0.00 3.02
2350 2774 6.475076 CAGAAGTATAACAGTCTCAGATGTGC 59.525 42.308 0.00 0.00 0.00 4.57
2353 2777 8.994429 AAACAGAAGTATAACAGTCTCAGATG 57.006 34.615 0.00 0.00 0.00 2.90
2362 2786 8.230486 CCTGCAAGTAAAACAGAAGTATAACAG 58.770 37.037 0.00 0.00 33.10 3.16
2363 2787 7.934665 TCCTGCAAGTAAAACAGAAGTATAACA 59.065 33.333 0.00 0.00 33.10 2.41
2364 2788 8.319143 TCCTGCAAGTAAAACAGAAGTATAAC 57.681 34.615 0.00 0.00 33.10 1.89
2447 2871 4.069304 TGTAGTCAATTTTTCCCTCCACG 58.931 43.478 0.00 0.00 0.00 4.94
2455 2879 6.972328 TCTGTGCTTGTTGTAGTCAATTTTTC 59.028 34.615 0.00 0.00 35.92 2.29
2561 2985 2.881266 GCACTGCTTTGTCGACGCA 61.881 57.895 14.56 14.56 0.00 5.24
2647 3073 5.163237 GGCTGGGATTTACACTAGATACCAA 60.163 44.000 0.00 0.00 33.48 3.67
2680 3106 1.134729 CCAATGGCAGTGGTTTATGGC 60.135 52.381 25.07 0.00 42.01 4.40
2715 3141 7.768240 TCGCAGAAGATTGACAGTAATAAGTA 58.232 34.615 0.00 0.00 0.00 2.24
2716 3142 6.631016 TCGCAGAAGATTGACAGTAATAAGT 58.369 36.000 0.00 0.00 0.00 2.24
2717 3143 7.223582 ACATCGCAGAAGATTGACAGTAATAAG 59.776 37.037 0.00 0.00 43.58 1.73
2718 3144 7.041721 ACATCGCAGAAGATTGACAGTAATAA 58.958 34.615 0.00 0.00 43.58 1.40
2728 3154 3.434641 AGTCACAACATCGCAGAAGATTG 59.565 43.478 0.00 0.00 43.58 2.67
2814 3240 2.161486 CGAACTCTAGCGCACCTGC 61.161 63.158 11.47 0.00 37.78 4.85
3005 3437 2.037121 TCTGCTTTAGCTGTGCACTGTA 59.963 45.455 22.70 12.19 42.66 2.74
3017 3449 6.072838 TGTTGCTCATTCTTCTTCTGCTTTAG 60.073 38.462 0.00 0.00 0.00 1.85
3056 3488 6.621613 TCTATATAAGCTGCCATAGACGTTG 58.378 40.000 0.00 0.00 0.00 4.10
3066 3498 9.930693 AGTTAGTTAACATCTATATAAGCTGCC 57.069 33.333 8.61 0.00 38.62 4.85
3204 3640 5.660460 GCTTCATTCGTTATTTTCCCCATT 58.340 37.500 0.00 0.00 0.00 3.16
3300 3736 9.988350 CTTGCTGACAGATATAAATACGTTTTT 57.012 29.630 6.65 8.98 0.00 1.94
3396 3832 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3397 3833 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3398 3834 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3399 3835 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3400 3836 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3401 3837 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3402 3838 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3403 3839 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3404 3840 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3414 3850 9.793259 TGTTGAAACCTCTAGAAAGACAAATAT 57.207 29.630 0.00 0.00 0.00 1.28
3415 3851 9.621629 TTGTTGAAACCTCTAGAAAGACAAATA 57.378 29.630 0.00 0.00 0.00 1.40
3416 3852 8.519799 TTGTTGAAACCTCTAGAAAGACAAAT 57.480 30.769 0.00 0.00 0.00 2.32
3417 3853 7.610305 ACTTGTTGAAACCTCTAGAAAGACAAA 59.390 33.333 0.00 0.00 0.00 2.83
3418 3854 7.065803 CACTTGTTGAAACCTCTAGAAAGACAA 59.934 37.037 0.00 0.00 0.00 3.18
3419 3855 6.538742 CACTTGTTGAAACCTCTAGAAAGACA 59.461 38.462 0.00 0.00 0.00 3.41
3420 3856 6.761714 TCACTTGTTGAAACCTCTAGAAAGAC 59.238 38.462 0.00 0.00 0.00 3.01
3421 3857 6.761714 GTCACTTGTTGAAACCTCTAGAAAGA 59.238 38.462 0.00 0.00 35.39 2.52
3422 3858 6.763610 AGTCACTTGTTGAAACCTCTAGAAAG 59.236 38.462 0.00 0.00 35.39 2.62
3423 3859 6.650120 AGTCACTTGTTGAAACCTCTAGAAA 58.350 36.000 0.00 0.00 35.39 2.52
3424 3860 6.235231 AGTCACTTGTTGAAACCTCTAGAA 57.765 37.500 0.00 0.00 35.39 2.10
3425 3861 5.871396 AGTCACTTGTTGAAACCTCTAGA 57.129 39.130 0.00 0.00 35.39 2.43
3428 3864 7.974501 CGTATATAGTCACTTGTTGAAACCTCT 59.025 37.037 0.00 0.00 35.39 3.69
3429 3865 7.222224 CCGTATATAGTCACTTGTTGAAACCTC 59.778 40.741 0.00 0.00 35.39 3.85
3430 3866 7.039882 CCGTATATAGTCACTTGTTGAAACCT 58.960 38.462 0.00 0.00 35.39 3.50
3431 3867 7.037438 TCCGTATATAGTCACTTGTTGAAACC 58.963 38.462 0.00 0.00 35.39 3.27
3432 3868 8.378421 GTTCCGTATATAGTCACTTGTTGAAAC 58.622 37.037 0.00 0.00 35.39 2.78
3433 3869 8.089597 TGTTCCGTATATAGTCACTTGTTGAAA 58.910 33.333 0.00 0.00 35.39 2.69
3434 3870 7.604549 TGTTCCGTATATAGTCACTTGTTGAA 58.395 34.615 0.00 0.00 35.39 2.69
3435 3871 7.160547 TGTTCCGTATATAGTCACTTGTTGA 57.839 36.000 0.00 0.00 0.00 3.18
3436 3872 7.821595 TTGTTCCGTATATAGTCACTTGTTG 57.178 36.000 0.00 0.00 0.00 3.33
3437 3873 8.836268 TTTTGTTCCGTATATAGTCACTTGTT 57.164 30.769 0.00 0.00 0.00 2.83
3438 3874 8.879759 CATTTTGTTCCGTATATAGTCACTTGT 58.120 33.333 0.00 0.00 0.00 3.16
3439 3875 9.093970 TCATTTTGTTCCGTATATAGTCACTTG 57.906 33.333 0.00 0.00 0.00 3.16
3440 3876 9.314321 CTCATTTTGTTCCGTATATAGTCACTT 57.686 33.333 0.00 0.00 0.00 3.16
3441 3877 8.475639 ACTCATTTTGTTCCGTATATAGTCACT 58.524 33.333 0.00 0.00 0.00 3.41
3442 3878 8.540492 CACTCATTTTGTTCCGTATATAGTCAC 58.460 37.037 0.00 0.00 0.00 3.67
3443 3879 7.709182 CCACTCATTTTGTTCCGTATATAGTCA 59.291 37.037 0.00 0.00 0.00 3.41
3444 3880 7.924412 TCCACTCATTTTGTTCCGTATATAGTC 59.076 37.037 0.00 0.00 0.00 2.59
3445 3881 7.788026 TCCACTCATTTTGTTCCGTATATAGT 58.212 34.615 0.00 0.00 0.00 2.12
3446 3882 8.833231 ATCCACTCATTTTGTTCCGTATATAG 57.167 34.615 0.00 0.00 0.00 1.31
3447 3883 8.647796 AGATCCACTCATTTTGTTCCGTATATA 58.352 33.333 0.00 0.00 0.00 0.86
3448 3884 7.509546 AGATCCACTCATTTTGTTCCGTATAT 58.490 34.615 0.00 0.00 0.00 0.86
3449 3885 6.884832 AGATCCACTCATTTTGTTCCGTATA 58.115 36.000 0.00 0.00 0.00 1.47
3450 3886 5.745227 AGATCCACTCATTTTGTTCCGTAT 58.255 37.500 0.00 0.00 0.00 3.06
3451 3887 5.160607 AGATCCACTCATTTTGTTCCGTA 57.839 39.130 0.00 0.00 0.00 4.02
3452 3888 4.021102 AGATCCACTCATTTTGTTCCGT 57.979 40.909 0.00 0.00 0.00 4.69
3453 3889 4.935205 TGTAGATCCACTCATTTTGTTCCG 59.065 41.667 0.00 0.00 0.00 4.30
3454 3890 5.940470 AGTGTAGATCCACTCATTTTGTTCC 59.060 40.000 0.00 0.00 41.84 3.62
3483 3919 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3485 3921 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3486 3922 8.733458 GTTACCACATACGGATGTATATAGACA 58.267 37.037 14.23 2.07 44.82 3.41
3487 3923 8.186821 GGTTACCACATACGGATGTATATAGAC 58.813 40.741 14.23 7.65 44.82 2.59
3488 3924 7.889600 TGGTTACCACATACGGATGTATATAGA 59.110 37.037 14.23 0.00 44.82 1.98
3489 3925 8.058667 TGGTTACCACATACGGATGTATATAG 57.941 38.462 14.23 0.00 44.82 1.31
3490 3926 8.598202 ATGGTTACCACATACGGATGTATATA 57.402 34.615 14.23 3.33 44.82 0.86
3491 3927 6.921486 TGGTTACCACATACGGATGTATAT 57.079 37.500 14.23 4.37 44.82 0.86
3492 3928 6.921486 ATGGTTACCACATACGGATGTATA 57.079 37.500 14.23 6.38 44.82 1.47
3493 3929 5.818678 ATGGTTACCACATACGGATGTAT 57.181 39.130 14.23 7.46 44.82 2.29
3494 3930 5.617528 AATGGTTACCACATACGGATGTA 57.382 39.130 14.23 0.00 44.82 2.29
3496 3932 4.878971 TCAAATGGTTACCACATACGGATG 59.121 41.667 6.10 5.94 35.80 3.51
3497 3933 5.105567 TCAAATGGTTACCACATACGGAT 57.894 39.130 6.10 0.00 35.80 4.18
3498 3934 4.554960 TCAAATGGTTACCACATACGGA 57.445 40.909 6.10 0.00 35.80 4.69
3499 3935 5.630661 TTTCAAATGGTTACCACATACGG 57.369 39.130 6.10 0.00 35.80 4.02
3500 3936 7.083875 AGATTTCAAATGGTTACCACATACG 57.916 36.000 6.10 0.00 35.80 3.06
3529 3965 7.452189 TCCCTCCGTTCCTAAATATTTGTTTTT 59.548 33.333 11.05 0.00 0.00 1.94
3530 3966 6.949463 TCCCTCCGTTCCTAAATATTTGTTTT 59.051 34.615 11.05 0.00 0.00 2.43
3531 3967 6.486941 TCCCTCCGTTCCTAAATATTTGTTT 58.513 36.000 11.05 0.00 0.00 2.83
3532 3968 6.069705 TCCCTCCGTTCCTAAATATTTGTT 57.930 37.500 11.05 0.00 0.00 2.83
3533 3969 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3534 3970 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3535 3971 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3536 3972 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
3537 3973 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3538 3974 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3539 3975 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3540 3976 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3541 3977 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3542 3978 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
3543 3979 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
3544 3980 0.464452 CCATGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
3545 3981 0.464452 CCCATGTACTCCCTCCGTTC 59.536 60.000 0.00 0.00 0.00 3.95
3546 3982 0.042131 TCCCATGTACTCCCTCCGTT 59.958 55.000 0.00 0.00 0.00 4.44
3547 3983 0.042131 TTCCCATGTACTCCCTCCGT 59.958 55.000 0.00 0.00 0.00 4.69
3548 3984 0.753262 CTTCCCATGTACTCCCTCCG 59.247 60.000 0.00 0.00 0.00 4.63
3549 3985 0.470341 GCTTCCCATGTACTCCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
3550 3986 1.204146 TGCTTCCCATGTACTCCCTC 58.796 55.000 0.00 0.00 0.00 4.30
3551 3987 1.492176 CATGCTTCCCATGTACTCCCT 59.508 52.381 0.00 0.00 45.05 4.20
3552 3988 1.972872 CATGCTTCCCATGTACTCCC 58.027 55.000 0.00 0.00 45.05 4.30
3662 4098 5.355596 CCAAGTGCCACATTTCAAAAGTAA 58.644 37.500 0.00 0.00 0.00 2.24
3663 4099 4.739137 GCCAAGTGCCACATTTCAAAAGTA 60.739 41.667 0.00 0.00 0.00 2.24
3728 4170 3.591196 TGGACATATTTTGCAGGCAAC 57.409 42.857 6.14 0.00 35.46 4.17
3740 4182 7.122650 CACTAGTTTTCCCATTGTTGGACATAT 59.877 37.037 0.00 0.00 46.92 1.78
3755 4197 5.121454 CAGCATCTGTTCTCACTAGTTTTCC 59.879 44.000 0.00 0.00 0.00 3.13
3764 4206 3.376546 GGGAAATCAGCATCTGTTCTCAC 59.623 47.826 0.00 0.00 32.61 3.51
3786 4228 6.749139 TCTCCTGTTACCAGAATTATCATCG 58.251 40.000 0.00 0.00 41.50 3.84
3828 4270 7.504926 AGTAATAGGTTGGTTAACTCCATCA 57.495 36.000 5.42 0.00 37.33 3.07
3853 4295 2.287608 GCAGCCAGCGTTTTTCTTTAGT 60.288 45.455 0.00 0.00 0.00 2.24
3957 4399 6.174720 TCCTTCTCTGCTTTAAAGTCAGAA 57.825 37.500 27.28 22.47 38.10 3.02
3996 4438 5.674820 GCCTCTTAGAACAAGTTATTGCTGC 60.675 44.000 0.00 0.00 40.27 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.