Multiple sequence alignment - TraesCS2D01G380700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G380700 chr2D 100.000 2934 0 0 1 2934 484900469 484903402 0.000000e+00 5419.0
1 TraesCS2D01G380700 chr2D 88.970 2185 168 39 788 2929 484875042 484877196 0.000000e+00 2632.0
2 TraesCS2D01G380700 chr2D 97.566 534 9 2 1 534 16905733 16906262 0.000000e+00 911.0
3 TraesCS2D01G380700 chr2D 97.191 534 10 3 1 534 142522063 142521535 0.000000e+00 898.0
4 TraesCS2D01G380700 chr4D 96.485 569 14 4 1 569 484449033 484449595 0.000000e+00 935.0
5 TraesCS2D01G380700 chr1D 97.378 534 10 2 1 534 189395120 189395649 0.000000e+00 905.0
6 TraesCS2D01G380700 chr1D 97.191 534 12 1 1 534 464936740 464937270 0.000000e+00 900.0
7 TraesCS2D01G380700 chr1D 92.308 39 3 0 2075 2113 283552174 283552212 4.080000e-04 56.5
8 TraesCS2D01G380700 chr5D 97.191 534 11 2 1 534 365119102 365118573 0.000000e+00 900.0
9 TraesCS2D01G380700 chr5D 79.116 249 47 3 1266 1510 5824241 5823994 1.810000e-37 167.0
10 TraesCS2D01G380700 chr5D 90.244 82 3 3 583 659 456733350 456733431 5.170000e-18 102.0
11 TraesCS2D01G380700 chr1B 97.191 534 12 1 1 534 582583419 582582889 0.000000e+00 900.0
12 TraesCS2D01G380700 chr1B 91.111 45 4 0 2069 2113 385160230 385160274 8.780000e-06 62.1
13 TraesCS2D01G380700 chr6D 97.191 534 10 3 1 534 427235483 427234955 0.000000e+00 898.0
14 TraesCS2D01G380700 chr6D 85.556 90 5 2 582 663 431009332 431009421 1.450000e-13 87.9
15 TraesCS2D01G380700 chr6D 85.882 85 4 2 583 659 377541641 377541725 1.870000e-12 84.2
16 TraesCS2D01G380700 chr2A 94.376 569 26 4 1 569 114327349 114327911 0.000000e+00 869.0
17 TraesCS2D01G380700 chr2A 87.640 89 3 2 581 661 714336273 714336361 2.410000e-16 97.1
18 TraesCS2D01G380700 chr5A 88.571 350 25 2 225 574 653934050 653933716 7.570000e-111 411.0
19 TraesCS2D01G380700 chr5A 92.105 152 8 3 662 811 662382624 662382773 8.240000e-51 211.0
20 TraesCS2D01G380700 chr5A 87.671 73 4 5 501 571 616871642 616871711 2.420000e-11 80.5
21 TraesCS2D01G380700 chr5A 86.111 72 5 4 501 570 650585694 650585626 4.060000e-09 73.1
22 TraesCS2D01G380700 chr5A 83.562 73 6 6 501 571 650583933 650583865 2.440000e-06 63.9
23 TraesCS2D01G380700 chr3B 97.710 131 3 0 664 794 765849339 765849469 2.940000e-55 226.0
24 TraesCS2D01G380700 chr3B 97.692 130 3 0 664 793 570934333 570934204 1.060000e-54 224.0
25 TraesCS2D01G380700 chr3B 96.992 133 4 0 660 792 633539079 633538947 1.060000e-54 224.0
26 TraesCS2D01G380700 chr3B 98.529 68 1 0 502 569 792822436 792822369 1.430000e-23 121.0
27 TraesCS2D01G380700 chr3B 86.364 66 9 0 2055 2120 726487111 726487046 4.060000e-09 73.1
28 TraesCS2D01G380700 chr2B 97.015 134 4 0 662 795 776888869 776888736 2.940000e-55 226.0
29 TraesCS2D01G380700 chr2B 96.324 136 4 1 664 799 104014175 104014041 3.810000e-54 222.0
30 TraesCS2D01G380700 chr2B 85.185 81 3 4 592 664 776891843 776891922 1.130000e-09 75.0
31 TraesCS2D01G380700 chr6A 93.289 149 6 4 647 794 457399340 457399485 1.770000e-52 217.0
32 TraesCS2D01G380700 chr7B 93.151 146 10 0 647 792 48470279 48470424 6.370000e-52 215.0
33 TraesCS2D01G380700 chr7B 81.081 148 25 3 2004 2150 746047731 746047876 6.640000e-22 115.0
34 TraesCS2D01G380700 chr5B 91.026 156 12 2 663 817 411518929 411518775 2.960000e-50 209.0
35 TraesCS2D01G380700 chr5B 97.143 70 1 1 502 571 708036621 708036553 1.850000e-22 117.0
36 TraesCS2D01G380700 chr5B 94.118 68 3 1 502 569 186842176 186842110 5.170000e-18 102.0
37 TraesCS2D01G380700 chr7A 92.405 79 5 1 582 659 59399735 59399813 8.600000e-21 111.0
38 TraesCS2D01G380700 chr7A 88.506 87 3 3 581 660 709389666 709389752 6.690000e-17 99.0
39 TraesCS2D01G380700 chr7D 87.129 101 8 4 2053 2149 632817220 632817121 3.090000e-20 110.0
40 TraesCS2D01G380700 chr7D 84.884 86 4 5 583 661 552186238 552186321 8.720000e-11 78.7
41 TraesCS2D01G380700 chr1A 88.372 86 3 2 581 659 513118101 513118186 2.410000e-16 97.1
42 TraesCS2D01G380700 chr1A 100.000 30 0 0 2075 2104 355322383 355322412 4.080000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G380700 chr2D 484900469 484903402 2933 False 5419 5419 100.000 1 2934 1 chr2D.!!$F3 2933
1 TraesCS2D01G380700 chr2D 484875042 484877196 2154 False 2632 2632 88.970 788 2929 1 chr2D.!!$F2 2141
2 TraesCS2D01G380700 chr2D 16905733 16906262 529 False 911 911 97.566 1 534 1 chr2D.!!$F1 533
3 TraesCS2D01G380700 chr2D 142521535 142522063 528 True 898 898 97.191 1 534 1 chr2D.!!$R1 533
4 TraesCS2D01G380700 chr4D 484449033 484449595 562 False 935 935 96.485 1 569 1 chr4D.!!$F1 568
5 TraesCS2D01G380700 chr1D 189395120 189395649 529 False 905 905 97.378 1 534 1 chr1D.!!$F1 533
6 TraesCS2D01G380700 chr1D 464936740 464937270 530 False 900 900 97.191 1 534 1 chr1D.!!$F3 533
7 TraesCS2D01G380700 chr5D 365118573 365119102 529 True 900 900 97.191 1 534 1 chr5D.!!$R2 533
8 TraesCS2D01G380700 chr1B 582582889 582583419 530 True 900 900 97.191 1 534 1 chr1B.!!$R1 533
9 TraesCS2D01G380700 chr6D 427234955 427235483 528 True 898 898 97.191 1 534 1 chr6D.!!$R1 533
10 TraesCS2D01G380700 chr2A 114327349 114327911 562 False 869 869 94.376 1 569 1 chr2A.!!$F1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 633 0.323957 GGGAAACTAGTCCGCCAACT 59.676 55.0 0.0 0.0 38.72 3.16 F
1192 1203 0.107848 GGTATGGTGACCGTTCCCTG 60.108 60.0 8.2 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 1906 0.106335 TTTGTAGCAACGGTTCGGGA 59.894 50.0 0.00 0.0 0.0 5.14 R
2900 2954 0.035152 AATCCCAATCTCAGCGCACA 60.035 50.0 11.47 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 6.978080 GTGTCTGATTAGGAAAGTTTGCAAAA 59.022 34.615 14.67 3.88 0.00 2.44
80 81 7.491048 GTGTCTGATTAGGAAAGTTTGCAAAAA 59.509 33.333 14.67 2.88 0.00 1.94
117 118 8.116026 ACTATTTATTGGGAGGAAAGTTGTGAT 58.884 33.333 0.00 0.00 0.00 3.06
559 560 3.328382 TTCACCAACTCGTCCATTAGG 57.672 47.619 0.00 0.00 0.00 2.69
571 572 7.372451 CTCGTCCATTAGGAGTAGAGATTAG 57.628 44.000 0.00 0.00 46.92 1.73
572 573 6.839454 TCGTCCATTAGGAGTAGAGATTAGT 58.161 40.000 0.00 0.00 46.92 2.24
573 574 7.971201 TCGTCCATTAGGAGTAGAGATTAGTA 58.029 38.462 0.00 0.00 46.92 1.82
574 575 7.877097 TCGTCCATTAGGAGTAGAGATTAGTAC 59.123 40.741 0.00 0.00 46.92 2.73
575 576 7.879160 CGTCCATTAGGAGTAGAGATTAGTACT 59.121 40.741 0.00 0.00 46.92 2.73
576 577 9.223099 GTCCATTAGGAGTAGAGATTAGTACTC 57.777 40.741 0.00 1.59 46.92 2.59
589 590 8.951541 AGAGATTAGTACTCCTTCATACTACCT 58.048 37.037 0.00 0.00 34.40 3.08
590 591 9.223099 GAGATTAGTACTCCTTCATACTACCTC 57.777 40.741 0.00 0.00 34.40 3.85
591 592 8.951541 AGATTAGTACTCCTTCATACTACCTCT 58.048 37.037 0.00 0.00 34.40 3.69
592 593 8.927675 ATTAGTACTCCTTCATACTACCTCTG 57.072 38.462 0.00 0.00 34.40 3.35
593 594 6.330178 AGTACTCCTTCATACTACCTCTGT 57.670 41.667 0.00 0.00 29.70 3.41
594 595 7.448915 AGTACTCCTTCATACTACCTCTGTA 57.551 40.000 0.00 0.00 29.70 2.74
595 596 7.281841 AGTACTCCTTCATACTACCTCTGTAC 58.718 42.308 0.00 0.00 29.70 2.90
596 597 5.447757 ACTCCTTCATACTACCTCTGTACC 58.552 45.833 0.00 0.00 0.00 3.34
597 598 4.458397 TCCTTCATACTACCTCTGTACCG 58.542 47.826 0.00 0.00 0.00 4.02
598 599 4.164796 TCCTTCATACTACCTCTGTACCGA 59.835 45.833 0.00 0.00 0.00 4.69
599 600 4.885907 CCTTCATACTACCTCTGTACCGAA 59.114 45.833 0.00 0.00 0.00 4.30
600 601 5.359009 CCTTCATACTACCTCTGTACCGAAA 59.641 44.000 0.00 0.00 0.00 3.46
601 602 6.040616 CCTTCATACTACCTCTGTACCGAAAT 59.959 42.308 0.00 0.00 0.00 2.17
602 603 7.230108 CCTTCATACTACCTCTGTACCGAAATA 59.770 40.741 0.00 0.00 0.00 1.40
603 604 7.502120 TCATACTACCTCTGTACCGAAATAC 57.498 40.000 0.00 0.00 0.00 1.89
604 605 7.285566 TCATACTACCTCTGTACCGAAATACT 58.714 38.462 0.00 0.00 0.00 2.12
605 606 7.776969 TCATACTACCTCTGTACCGAAATACTT 59.223 37.037 0.00 0.00 0.00 2.24
606 607 6.205101 ACTACCTCTGTACCGAAATACTTG 57.795 41.667 0.00 0.00 0.00 3.16
607 608 5.713861 ACTACCTCTGTACCGAAATACTTGT 59.286 40.000 0.00 0.00 0.00 3.16
608 609 6.886459 ACTACCTCTGTACCGAAATACTTGTA 59.114 38.462 0.00 0.00 0.00 2.41
609 610 6.205101 ACCTCTGTACCGAAATACTTGTAG 57.795 41.667 0.00 0.00 0.00 2.74
610 611 5.041940 CCTCTGTACCGAAATACTTGTAGC 58.958 45.833 0.00 0.00 0.00 3.58
611 612 5.163540 CCTCTGTACCGAAATACTTGTAGCT 60.164 44.000 0.00 0.00 0.00 3.32
612 613 5.647589 TCTGTACCGAAATACTTGTAGCTG 58.352 41.667 0.00 0.00 0.00 4.24
613 614 4.751060 TGTACCGAAATACTTGTAGCTGG 58.249 43.478 0.00 0.00 0.00 4.85
614 615 3.261981 ACCGAAATACTTGTAGCTGGG 57.738 47.619 0.00 0.00 0.00 4.45
615 616 2.093128 ACCGAAATACTTGTAGCTGGGG 60.093 50.000 0.00 0.00 0.00 4.96
616 617 2.169769 CCGAAATACTTGTAGCTGGGGA 59.830 50.000 0.00 0.00 0.00 4.81
617 618 3.370103 CCGAAATACTTGTAGCTGGGGAA 60.370 47.826 0.00 0.00 0.00 3.97
618 619 4.258543 CGAAATACTTGTAGCTGGGGAAA 58.741 43.478 0.00 0.00 0.00 3.13
619 620 4.094442 CGAAATACTTGTAGCTGGGGAAAC 59.906 45.833 0.00 0.00 0.00 2.78
620 621 4.929146 AATACTTGTAGCTGGGGAAACT 57.071 40.909 0.00 0.00 0.00 2.66
621 622 6.382919 AAATACTTGTAGCTGGGGAAACTA 57.617 37.500 0.00 0.00 0.00 2.24
622 623 3.983044 ACTTGTAGCTGGGGAAACTAG 57.017 47.619 0.00 0.00 0.00 2.57
623 624 3.248888 ACTTGTAGCTGGGGAAACTAGT 58.751 45.455 0.00 0.00 0.00 2.57
624 625 3.261137 ACTTGTAGCTGGGGAAACTAGTC 59.739 47.826 0.00 0.00 0.00 2.59
625 626 2.185387 TGTAGCTGGGGAAACTAGTCC 58.815 52.381 0.00 0.00 36.90 3.85
626 627 1.136500 GTAGCTGGGGAAACTAGTCCG 59.864 57.143 0.00 0.00 38.72 4.79
629 630 3.395630 GGGGAAACTAGTCCGCCA 58.604 61.111 19.75 0.00 43.21 5.69
630 631 1.681076 GGGGAAACTAGTCCGCCAA 59.319 57.895 19.75 0.00 43.21 4.52
631 632 0.675837 GGGGAAACTAGTCCGCCAAC 60.676 60.000 19.75 6.62 43.21 3.77
632 633 0.323957 GGGAAACTAGTCCGCCAACT 59.676 55.000 0.00 0.00 38.72 3.16
633 634 1.551883 GGGAAACTAGTCCGCCAACTA 59.448 52.381 0.00 0.00 38.72 2.24
634 635 2.614779 GGAAACTAGTCCGCCAACTAC 58.385 52.381 0.00 0.00 0.00 2.73
635 636 2.028748 GGAAACTAGTCCGCCAACTACA 60.029 50.000 0.00 0.00 0.00 2.74
636 637 3.555586 GGAAACTAGTCCGCCAACTACAA 60.556 47.826 0.00 0.00 0.00 2.41
637 638 3.314541 AACTAGTCCGCCAACTACAAG 57.685 47.619 0.00 0.00 0.00 3.16
638 639 2.245582 ACTAGTCCGCCAACTACAAGT 58.754 47.619 0.00 0.00 0.00 3.16
639 640 3.424703 ACTAGTCCGCCAACTACAAGTA 58.575 45.455 0.00 0.00 0.00 2.24
640 641 4.021916 ACTAGTCCGCCAACTACAAGTAT 58.978 43.478 0.00 0.00 0.00 2.12
641 642 5.195940 ACTAGTCCGCCAACTACAAGTATA 58.804 41.667 0.00 0.00 0.00 1.47
642 643 5.832060 ACTAGTCCGCCAACTACAAGTATAT 59.168 40.000 0.00 0.00 0.00 0.86
643 644 5.197682 AGTCCGCCAACTACAAGTATATC 57.802 43.478 0.00 0.00 0.00 1.63
644 645 3.979495 GTCCGCCAACTACAAGTATATCG 59.021 47.826 0.00 0.00 0.00 2.92
645 646 3.005050 TCCGCCAACTACAAGTATATCGG 59.995 47.826 0.00 0.00 32.32 4.18
646 647 3.243636 CCGCCAACTACAAGTATATCGGT 60.244 47.826 0.00 0.00 0.00 4.69
647 648 4.022935 CCGCCAACTACAAGTATATCGGTA 60.023 45.833 0.00 0.00 0.00 4.02
648 649 4.913924 CGCCAACTACAAGTATATCGGTAC 59.086 45.833 0.00 0.00 0.00 3.34
649 650 5.506151 CGCCAACTACAAGTATATCGGTACA 60.506 44.000 0.00 0.00 0.00 2.90
650 651 5.919141 GCCAACTACAAGTATATCGGTACAG 59.081 44.000 0.00 0.00 0.00 2.74
651 652 6.238842 GCCAACTACAAGTATATCGGTACAGA 60.239 42.308 0.00 0.00 0.00 3.41
652 653 7.361127 CCAACTACAAGTATATCGGTACAGAG 58.639 42.308 1.40 0.00 0.00 3.35
653 654 7.361127 CAACTACAAGTATATCGGTACAGAGG 58.639 42.308 1.40 0.00 0.00 3.69
654 655 6.002704 ACTACAAGTATATCGGTACAGAGGG 58.997 44.000 1.40 0.00 0.00 4.30
655 656 5.057843 ACAAGTATATCGGTACAGAGGGA 57.942 43.478 1.40 0.00 0.00 4.20
656 657 5.071370 ACAAGTATATCGGTACAGAGGGAG 58.929 45.833 1.40 0.00 0.00 4.30
657 658 4.997545 AGTATATCGGTACAGAGGGAGT 57.002 45.455 1.40 0.00 0.00 3.85
658 659 6.183361 ACAAGTATATCGGTACAGAGGGAGTA 60.183 42.308 1.40 0.00 0.00 2.59
659 660 6.052405 AGTATATCGGTACAGAGGGAGTAG 57.948 45.833 1.40 0.00 0.00 2.57
660 661 4.997545 ATATCGGTACAGAGGGAGTAGT 57.002 45.455 1.40 0.00 0.00 2.73
661 662 6.728164 AGTATATCGGTACAGAGGGAGTAGTA 59.272 42.308 1.40 0.00 0.00 1.82
662 663 4.997545 ATCGGTACAGAGGGAGTAGTAT 57.002 45.455 1.40 0.00 0.00 2.12
663 664 7.746243 ATATCGGTACAGAGGGAGTAGTATA 57.254 40.000 1.40 0.00 0.00 1.47
664 665 6.639590 ATCGGTACAGAGGGAGTAGTATAT 57.360 41.667 1.40 0.00 0.00 0.86
665 666 7.746243 ATCGGTACAGAGGGAGTAGTATATA 57.254 40.000 1.40 0.00 0.00 0.86
666 667 6.940739 TCGGTACAGAGGGAGTAGTATATAC 58.059 44.000 4.60 4.60 0.00 1.47
667 668 6.728164 TCGGTACAGAGGGAGTAGTATATACT 59.272 42.308 19.07 19.07 40.24 2.12
668 669 7.041107 CGGTACAGAGGGAGTAGTATATACTC 58.959 46.154 18.68 7.10 42.28 2.59
677 678 5.427378 GAGTAGTATATACTCCCTCCGTCC 58.573 50.000 18.68 1.65 38.33 4.79
678 679 3.347077 AGTATATACTCCCTCCGTCCG 57.653 52.381 9.71 0.00 0.00 4.79
679 680 2.909006 AGTATATACTCCCTCCGTCCGA 59.091 50.000 9.71 0.00 0.00 4.55
680 681 2.965671 ATATACTCCCTCCGTCCGAA 57.034 50.000 0.00 0.00 0.00 4.30
681 682 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
682 683 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
683 684 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
684 685 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
685 686 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
686 687 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
687 688 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
688 689 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
689 690 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
690 691 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
691 692 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
692 693 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
693 694 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
694 695 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
695 696 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
696 697 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
697 698 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
698 699 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
699 700 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
700 701 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
701 702 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
702 703 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
756 757 8.547481 TGTCTAGATACATCACCTTTTATCCA 57.453 34.615 0.00 0.00 0.00 3.41
757 758 9.159254 TGTCTAGATACATCACCTTTTATCCAT 57.841 33.333 0.00 0.00 0.00 3.41
762 763 9.699410 AGATACATCACCTTTTATCCATTTTGA 57.301 29.630 0.00 0.00 0.00 2.69
765 766 8.365060 ACATCACCTTTTATCCATTTTGATGA 57.635 30.769 13.63 0.00 40.95 2.92
766 767 8.253113 ACATCACCTTTTATCCATTTTGATGAC 58.747 33.333 13.63 0.00 40.95 3.06
767 768 7.773489 TCACCTTTTATCCATTTTGATGACA 57.227 32.000 0.00 0.00 0.00 3.58
768 769 8.187913 TCACCTTTTATCCATTTTGATGACAA 57.812 30.769 0.00 0.00 0.00 3.18
769 770 8.306038 TCACCTTTTATCCATTTTGATGACAAG 58.694 33.333 0.00 0.00 37.32 3.16
770 771 8.090214 CACCTTTTATCCATTTTGATGACAAGT 58.910 33.333 0.00 0.00 37.32 3.16
771 772 9.308000 ACCTTTTATCCATTTTGATGACAAGTA 57.692 29.630 0.00 0.00 37.32 2.24
777 778 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
778 779 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
779 780 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
780 781 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
781 782 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
782 783 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
783 784 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
784 785 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
785 786 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
786 787 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
795 796 2.158415 TCCGGACGGAGGGAGTATAATT 60.158 50.000 9.76 0.00 39.76 1.40
796 797 2.631545 CCGGACGGAGGGAGTATAATTT 59.368 50.000 4.40 0.00 37.50 1.82
805 806 5.221581 GGAGGGAGTATAATTTTACGCCTCA 60.222 44.000 21.68 0.00 40.63 3.86
866 870 6.800072 ATGTTAGGGGTCAAAGTTTTTCAA 57.200 33.333 0.00 0.00 0.00 2.69
875 879 9.936759 GGGGTCAAAGTTTTTCAATATATTTGA 57.063 29.630 0.00 0.00 33.97 2.69
912 916 5.702670 TGGTTTCTTGATCTGCTCTAACAAG 59.297 40.000 0.00 0.00 39.13 3.16
1041 1052 6.607004 AGTAGCAGGAGTATTACACAAAGT 57.393 37.500 0.00 0.00 0.00 2.66
1071 1082 1.003116 CGCATGCTACTTGATGAAGCC 60.003 52.381 17.13 0.00 35.33 4.35
1116 1127 5.815233 TCTCACTTTTGGAGAAGATCACT 57.185 39.130 0.00 0.00 38.40 3.41
1125 1136 9.971922 CTTTTGGAGAAGATCACTAACAATTTT 57.028 29.630 0.00 0.00 0.00 1.82
1161 1172 1.600023 TTGGTAGAGGTGGTTTTGCG 58.400 50.000 0.00 0.00 0.00 4.85
1172 1183 3.193903 GGTGGTTTTGCGGTGGTTTATAT 59.806 43.478 0.00 0.00 0.00 0.86
1178 1189 5.759506 TTTGCGGTGGTTTATATGGTATG 57.240 39.130 0.00 0.00 0.00 2.39
1185 1196 4.753107 GTGGTTTATATGGTATGGTGACCG 59.247 45.833 0.00 0.00 42.99 4.79
1192 1203 0.107848 GGTATGGTGACCGTTCCCTG 60.108 60.000 8.20 0.00 0.00 4.45
1199 1210 2.745821 GGTGACCGTTCCCTGTTTTATC 59.254 50.000 0.00 0.00 0.00 1.75
1212 1223 7.175104 TCCCTGTTTTATCTTTACTGCTCAAT 58.825 34.615 0.00 0.00 0.00 2.57
1213 1224 8.325787 TCCCTGTTTTATCTTTACTGCTCAATA 58.674 33.333 0.00 0.00 0.00 1.90
1214 1225 9.125026 CCCTGTTTTATCTTTACTGCTCAATAT 57.875 33.333 0.00 0.00 0.00 1.28
1255 1266 9.578439 GAAAGCTAAATTTATCCATGCATATCC 57.422 33.333 0.00 0.00 0.00 2.59
1258 1269 4.989279 AATTTATCCATGCATATCCCGC 57.011 40.909 0.00 0.00 0.00 6.13
1260 1271 0.177836 TATCCATGCATATCCCGCGG 59.822 55.000 21.04 21.04 0.00 6.46
1286 1297 0.329596 GGAGTGCTTGAGAATGGGGT 59.670 55.000 0.00 0.00 0.00 4.95
1306 1317 1.826720 TGGTCGCCGTAAAGAGGTTAT 59.173 47.619 0.00 0.00 0.00 1.89
1307 1318 3.023119 TGGTCGCCGTAAAGAGGTTATA 58.977 45.455 0.00 0.00 0.00 0.98
1308 1319 3.638160 TGGTCGCCGTAAAGAGGTTATAT 59.362 43.478 0.00 0.00 0.00 0.86
1431 1442 4.022359 ACAAGGGAAGGTGGATAGGTAT 57.978 45.455 0.00 0.00 0.00 2.73
1444 1455 9.367160 AGGTGGATAGGTATAATGGAAAAATTG 57.633 33.333 0.00 0.00 0.00 2.32
1455 1466 5.612725 ATGGAAAAATTGTTATGGCCGAT 57.387 34.783 0.00 0.00 0.00 4.18
1456 1467 6.723298 ATGGAAAAATTGTTATGGCCGATA 57.277 33.333 0.00 0.00 0.00 2.92
1471 1482 5.680619 TGGCCGATATACAAGAAAGATTGT 58.319 37.500 0.00 0.00 45.19 2.71
1473 1484 6.260050 TGGCCGATATACAAGAAAGATTGTTC 59.740 38.462 0.00 0.00 40.47 3.18
1481 1492 5.045872 ACAAGAAAGATTGTTCTGCTTTGC 58.954 37.500 0.00 0.00 40.47 3.68
1482 1493 4.924305 AGAAAGATTGTTCTGCTTTGCA 57.076 36.364 0.00 0.00 36.48 4.08
1499 1510 3.660501 TGCATATCTACCTAACGGCAG 57.339 47.619 0.00 0.00 0.00 4.85
1504 1515 1.376543 TCTACCTAACGGCAGTCTCG 58.623 55.000 0.00 0.00 0.00 4.04
1515 1526 3.756963 ACGGCAGTCTCGATAAGCATATA 59.243 43.478 0.00 0.00 0.00 0.86
1523 1534 9.692749 CAGTCTCGATAAGCATATAAAAGGTAA 57.307 33.333 0.00 0.00 0.00 2.85
1534 1545 8.143835 AGCATATAAAAGGTAAAATCATGTGCC 58.856 33.333 0.00 0.00 31.74 5.01
1556 1567 4.455877 CCGCCTAACATTTCTCTTCACTTT 59.544 41.667 0.00 0.00 0.00 2.66
1560 1571 7.905493 CGCCTAACATTTCTCTTCACTTTTATC 59.095 37.037 0.00 0.00 0.00 1.75
1601 1612 1.135972 GGTTCAAGTAGCACGTGCATG 60.136 52.381 39.21 29.34 45.16 4.06
1604 1615 0.867746 CAAGTAGCACGTGCATGTGT 59.132 50.000 39.21 22.49 45.16 3.72
1610 1621 1.122849 GCACGTGCATGTGTTTGAAG 58.877 50.000 34.52 12.54 41.94 3.02
1612 1623 2.796304 CACGTGCATGTGTTTGAAGTT 58.204 42.857 27.52 0.00 35.12 2.66
1620 1631 7.145323 GTGCATGTGTTTGAAGTTATTTACCT 58.855 34.615 0.00 0.00 0.00 3.08
1637 1648 6.811253 TTTACCTTGTTGTAAGCTATGGTG 57.189 37.500 0.00 0.00 32.63 4.17
1642 1653 5.356751 CCTTGTTGTAAGCTATGGTGCAATA 59.643 40.000 0.00 0.00 34.99 1.90
1643 1654 6.039717 CCTTGTTGTAAGCTATGGTGCAATAT 59.960 38.462 0.00 0.00 34.99 1.28
1672 1683 8.833231 TTAAAGAGGTGAAATGTCTCAGTTAG 57.167 34.615 0.00 0.00 0.00 2.34
1708 1719 7.838696 CCCCTAACTCATCTCTCATATGTAGAT 59.161 40.741 13.98 13.98 0.00 1.98
1709 1720 8.685427 CCCTAACTCATCTCTCATATGTAGATG 58.315 40.741 27.34 27.34 45.19 2.90
1710 1721 8.685427 CCTAACTCATCTCTCATATGTAGATGG 58.315 40.741 29.69 25.09 44.37 3.51
1720 1731 7.012607 TCTCATATGTAGATGGATCTTGTGGA 58.987 38.462 1.90 0.00 38.32 4.02
1722 1733 8.211030 TCATATGTAGATGGATCTTGTGGAAT 57.789 34.615 1.90 0.00 38.32 3.01
1743 1754 7.758980 TGGAATTGAATGGAAAACATGTTATCG 59.241 33.333 12.39 0.00 40.44 2.92
1768 1779 2.887454 TCAAGGGGATATGTGAGGGA 57.113 50.000 0.00 0.00 0.00 4.20
1780 1791 6.295349 GGATATGTGAGGGACTACATTACCTG 60.295 46.154 0.00 0.00 41.55 4.00
1816 1827 0.468226 TGCACCTCGACTTGAAACCT 59.532 50.000 0.00 0.00 0.00 3.50
1895 1906 4.082571 CGAGGAACTTTGAGGAAATGCAAT 60.083 41.667 0.00 0.00 41.55 3.56
1899 1910 2.493278 ACTTTGAGGAAATGCAATCCCG 59.507 45.455 16.10 5.26 37.71 5.14
1904 1915 0.100503 GGAAATGCAATCCCGAACCG 59.899 55.000 10.13 0.00 0.00 4.44
1935 1946 7.881142 ACAAAAATGATTGGAACGATGTAAGA 58.119 30.769 0.00 0.00 34.56 2.10
1969 1980 9.853177 AACATATTGTAAGCTAAGCCTTTATCT 57.147 29.630 0.00 0.00 0.00 1.98
1970 1981 9.853177 ACATATTGTAAGCTAAGCCTTTATCTT 57.147 29.630 0.00 0.00 31.94 2.40
2025 2036 7.698130 GTCTATTTGTTTTCATGCAGTGGATAC 59.302 37.037 0.00 0.00 0.00 2.24
2178 2191 8.044060 TGTCACCATTCAAGATAAATTCTCAC 57.956 34.615 0.00 0.00 31.78 3.51
2197 2210 9.853555 ATTCTCACTCGATAATAGATCAATCAC 57.146 33.333 0.00 0.00 0.00 3.06
2212 2225 4.072131 TCAATCACCTTAGGCTTGAACAC 58.928 43.478 0.00 0.00 0.00 3.32
2223 2236 3.881688 AGGCTTGAACACTGCATGATATC 59.118 43.478 0.00 0.00 0.00 1.63
2281 2294 7.984422 TCATTTGTGAAAGTGTACATCTGAT 57.016 32.000 0.00 0.00 0.00 2.90
2282 2295 7.809665 TCATTTGTGAAAGTGTACATCTGATG 58.190 34.615 15.83 15.83 0.00 3.07
2286 2299 6.163476 TGTGAAAGTGTACATCTGATGGTAC 58.837 40.000 20.83 18.28 40.15 3.34
2302 2315 3.093814 TGGTACAAAGCAGTATCGAGGA 58.906 45.455 0.00 0.00 31.92 3.71
2309 2322 7.308782 ACAAAGCAGTATCGAGGAAAAATAG 57.691 36.000 0.00 0.00 0.00 1.73
2312 2325 7.541122 AAGCAGTATCGAGGAAAAATAGAAC 57.459 36.000 0.00 0.00 0.00 3.01
2317 2330 9.319143 CAGTATCGAGGAAAAATAGAACTTGAT 57.681 33.333 0.00 0.00 36.52 2.57
2322 2335 8.482943 TCGAGGAAAAATAGAACTTGATATGGA 58.517 33.333 0.00 0.00 0.00 3.41
2351 2364 9.705290 GAAAATTAGCATTCTTGGTAAGGAAAA 57.295 29.630 4.28 0.00 45.93 2.29
2356 2369 7.486407 AGCATTCTTGGTAAGGAAAATTGAT 57.514 32.000 0.00 0.00 0.00 2.57
2366 2379 9.148879 TGGTAAGGAAAATTGATGGAAACTAAA 57.851 29.630 0.00 0.00 0.00 1.85
2409 2422 8.414629 AAGAAGCATTTGGAAGTAAAAGATCT 57.585 30.769 0.00 0.00 0.00 2.75
2410 2423 7.824672 AGAAGCATTTGGAAGTAAAAGATCTG 58.175 34.615 0.00 0.00 0.00 2.90
2456 2504 1.768870 GGACTATTTGGGCTCCTGCTA 59.231 52.381 0.00 0.00 39.59 3.49
2462 2510 2.200373 TTGGGCTCCTGCTACTTTTC 57.800 50.000 0.00 0.00 39.59 2.29
2499 2547 9.391006 GGTATGAACATGGATCACTACTAAAAA 57.609 33.333 5.70 0.00 0.00 1.94
2512 2560 7.893658 TCACTACTAAAAAGACTACAAGGAGG 58.106 38.462 0.00 0.00 0.00 4.30
2513 2561 7.039223 TCACTACTAAAAAGACTACAAGGAGGG 60.039 40.741 0.00 0.00 0.00 4.30
2517 2565 5.843019 AAAAAGACTACAAGGAGGGATGA 57.157 39.130 0.00 0.00 0.00 2.92
2521 2569 4.889780 AGACTACAAGGAGGGATGAAGAT 58.110 43.478 0.00 0.00 0.00 2.40
2524 2572 6.216456 AGACTACAAGGAGGGATGAAGATTTT 59.784 38.462 0.00 0.00 0.00 1.82
2525 2573 6.418946 ACTACAAGGAGGGATGAAGATTTTC 58.581 40.000 0.00 0.00 0.00 2.29
2526 2574 5.527026 ACAAGGAGGGATGAAGATTTTCT 57.473 39.130 0.00 0.00 34.31 2.52
2527 2575 5.896963 ACAAGGAGGGATGAAGATTTTCTT 58.103 37.500 0.00 0.00 39.87 2.52
2528 2576 5.713861 ACAAGGAGGGATGAAGATTTTCTTG 59.286 40.000 0.00 0.00 36.73 3.02
2529 2577 5.786121 AGGAGGGATGAAGATTTTCTTGA 57.214 39.130 0.00 0.00 36.73 3.02
2530 2578 5.753716 AGGAGGGATGAAGATTTTCTTGAG 58.246 41.667 0.00 0.00 36.73 3.02
2531 2579 5.252630 AGGAGGGATGAAGATTTTCTTGAGT 59.747 40.000 0.00 0.00 36.73 3.41
2532 2580 5.588246 GGAGGGATGAAGATTTTCTTGAGTC 59.412 44.000 0.00 0.00 36.73 3.36
2533 2581 5.181748 AGGGATGAAGATTTTCTTGAGTCG 58.818 41.667 0.00 0.00 36.73 4.18
2535 2583 5.643777 GGGATGAAGATTTTCTTGAGTCGAA 59.356 40.000 0.00 0.00 36.73 3.71
2536 2584 6.402658 GGGATGAAGATTTTCTTGAGTCGAAC 60.403 42.308 0.00 0.00 36.73 3.95
2537 2585 5.924475 TGAAGATTTTCTTGAGTCGAACC 57.076 39.130 0.00 0.00 36.73 3.62
2538 2586 4.755123 TGAAGATTTTCTTGAGTCGAACCC 59.245 41.667 0.00 0.00 36.73 4.11
2540 2588 4.974399 AGATTTTCTTGAGTCGAACCCTT 58.026 39.130 0.00 0.00 0.00 3.95
2541 2589 5.377478 AGATTTTCTTGAGTCGAACCCTTT 58.623 37.500 0.00 0.00 0.00 3.11
2542 2590 5.828328 AGATTTTCTTGAGTCGAACCCTTTT 59.172 36.000 0.00 0.00 0.00 2.27
2543 2591 6.996282 AGATTTTCTTGAGTCGAACCCTTTTA 59.004 34.615 0.00 0.00 0.00 1.52
2544 2592 7.501225 AGATTTTCTTGAGTCGAACCCTTTTAA 59.499 33.333 0.00 0.00 0.00 1.52
2545 2593 7.393841 TTTTCTTGAGTCGAACCCTTTTAAA 57.606 32.000 0.00 0.00 0.00 1.52
2546 2594 7.576861 TTTCTTGAGTCGAACCCTTTTAAAT 57.423 32.000 0.00 0.00 0.00 1.40
2547 2595 6.554334 TCTTGAGTCGAACCCTTTTAAATG 57.446 37.500 0.00 0.00 0.00 2.32
2548 2596 5.472137 TCTTGAGTCGAACCCTTTTAAATGG 59.528 40.000 12.20 12.20 0.00 3.16
2549 2597 4.975631 TGAGTCGAACCCTTTTAAATGGA 58.024 39.130 19.15 0.00 0.00 3.41
2550 2598 5.566469 TGAGTCGAACCCTTTTAAATGGAT 58.434 37.500 19.15 9.23 0.00 3.41
2551 2599 5.646360 TGAGTCGAACCCTTTTAAATGGATC 59.354 40.000 19.15 15.15 0.00 3.36
2552 2600 5.566469 AGTCGAACCCTTTTAAATGGATCA 58.434 37.500 19.15 7.41 0.00 2.92
2553 2601 5.648092 AGTCGAACCCTTTTAAATGGATCAG 59.352 40.000 19.15 12.86 0.00 2.90
2554 2602 5.646360 GTCGAACCCTTTTAAATGGATCAGA 59.354 40.000 19.15 14.30 0.00 3.27
2555 2603 6.150474 GTCGAACCCTTTTAAATGGATCAGAA 59.850 38.462 19.15 5.58 0.00 3.02
2556 2604 6.374333 TCGAACCCTTTTAAATGGATCAGAAG 59.626 38.462 19.15 5.51 0.00 2.85
2557 2605 6.404734 CGAACCCTTTTAAATGGATCAGAAGG 60.405 42.308 19.15 5.87 33.63 3.46
2558 2606 5.903923 ACCCTTTTAAATGGATCAGAAGGT 58.096 37.500 19.15 5.44 32.30 3.50
2559 2607 6.322931 ACCCTTTTAAATGGATCAGAAGGTT 58.677 36.000 19.15 0.00 32.30 3.50
2560 2608 6.787458 ACCCTTTTAAATGGATCAGAAGGTTT 59.213 34.615 19.15 0.00 32.30 3.27
2561 2609 7.292356 ACCCTTTTAAATGGATCAGAAGGTTTT 59.708 33.333 19.15 0.00 32.30 2.43
2562 2610 7.819415 CCCTTTTAAATGGATCAGAAGGTTTTC 59.181 37.037 19.15 0.00 32.30 2.29
2563 2611 8.588472 CCTTTTAAATGGATCAGAAGGTTTTCT 58.412 33.333 13.61 0.00 44.45 2.52
2564 2612 9.987272 CTTTTAAATGGATCAGAAGGTTTTCTT 57.013 29.630 0.00 0.00 41.71 2.52
2565 2613 9.762933 TTTTAAATGGATCAGAAGGTTTTCTTG 57.237 29.630 0.00 0.00 41.71 3.02
2566 2614 8.704849 TTAAATGGATCAGAAGGTTTTCTTGA 57.295 30.769 0.00 0.00 41.71 3.02
2612 2660 9.485206 TCTTAAAGAAGTAGTGTACCATTTGTC 57.515 33.333 0.00 0.00 34.03 3.18
2614 2662 7.730364 AAAGAAGTAGTGTACCATTTGTCTG 57.270 36.000 0.00 0.00 0.00 3.51
2665 2713 6.682113 GCAATTTTCATGGTGCTAGATCACAT 60.682 38.462 0.00 0.00 38.66 3.21
2682 2730 7.944061 AGATCACATGAGAAACTATGAGAGAG 58.056 38.462 0.00 0.00 29.73 3.20
2684 2732 4.739228 CACATGAGAAACTATGAGAGAGCG 59.261 45.833 0.00 0.00 0.00 5.03
2699 2749 3.118992 AGAGAGCGCATCATCTGTTGTAA 60.119 43.478 11.47 0.00 0.00 2.41
2705 2755 5.094812 GCGCATCATCTGTTGTAATTTGAA 58.905 37.500 0.30 0.00 0.00 2.69
2747 2799 1.072332 TGTCAACATCGGGTGTGGG 59.928 57.895 0.00 0.00 41.14 4.61
2757 2809 1.747745 GGGTGTGGGGTTCGCATAC 60.748 63.158 3.90 3.90 38.25 2.39
2777 2829 8.164790 CGCATACAGAATACATATGTGCTTTAG 58.835 37.037 18.81 10.13 31.98 1.85
2795 2849 6.810182 TGCTTTAGTTTACGTAAGGAGATGTC 59.190 38.462 8.23 0.00 46.39 3.06
2809 2863 4.039004 AGGAGATGTCTCTGATCCATTTCG 59.961 45.833 9.68 0.00 42.48 3.46
2815 2869 6.709018 TGTCTCTGATCCATTTCGTATACA 57.291 37.500 3.32 0.00 0.00 2.29
2823 2877 7.164803 TGATCCATTTCGTATACAATATGGCA 58.835 34.615 16.61 10.43 34.05 4.92
2829 2883 9.676195 CATTTCGTATACAATATGGCAATTTCA 57.324 29.630 3.32 0.00 0.00 2.69
2872 2926 4.716784 ACAATAGGTTGGAGCTATCACAGA 59.283 41.667 0.00 0.00 37.88 3.41
2880 2934 3.582647 TGGAGCTATCACAGAGAAACCAA 59.417 43.478 0.00 0.00 0.00 3.67
2900 2954 7.681939 ACCAACATTATGAACAAATACGAGT 57.318 32.000 0.00 0.00 0.00 4.18
2901 2955 7.526608 ACCAACATTATGAACAAATACGAGTG 58.473 34.615 0.00 0.00 0.00 3.51
2929 2983 4.711399 TGAGATTGGGATTGAGTGCATAG 58.289 43.478 0.00 0.00 0.00 2.23
2930 2984 4.409901 TGAGATTGGGATTGAGTGCATAGA 59.590 41.667 0.00 0.00 0.00 1.98
2931 2985 5.104402 TGAGATTGGGATTGAGTGCATAGAA 60.104 40.000 0.00 0.00 0.00 2.10
2932 2986 5.128919 AGATTGGGATTGAGTGCATAGAAC 58.871 41.667 0.00 0.00 0.00 3.01
2933 2987 3.998913 TGGGATTGAGTGCATAGAACA 57.001 42.857 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
401 402 6.629128 TCCTAACGTATAACAAATCACGGAA 58.371 36.000 0.00 0.00 38.67 4.30
569 570 7.448915 ACAGAGGTAGTATGAAGGAGTACTA 57.551 40.000 0.00 0.00 33.48 1.82
570 571 6.330178 ACAGAGGTAGTATGAAGGAGTACT 57.670 41.667 0.00 0.00 35.47 2.73
571 572 6.486320 GGTACAGAGGTAGTATGAAGGAGTAC 59.514 46.154 0.00 0.00 0.00 2.73
572 573 6.599445 GGTACAGAGGTAGTATGAAGGAGTA 58.401 44.000 0.00 0.00 0.00 2.59
573 574 5.447757 GGTACAGAGGTAGTATGAAGGAGT 58.552 45.833 0.00 0.00 0.00 3.85
574 575 4.515944 CGGTACAGAGGTAGTATGAAGGAG 59.484 50.000 0.00 0.00 0.00 3.69
575 576 4.164796 TCGGTACAGAGGTAGTATGAAGGA 59.835 45.833 0.00 0.00 0.00 3.36
576 577 4.458397 TCGGTACAGAGGTAGTATGAAGG 58.542 47.826 0.00 0.00 0.00 3.46
577 578 6.446781 TTTCGGTACAGAGGTAGTATGAAG 57.553 41.667 0.00 0.00 0.00 3.02
578 579 7.776969 AGTATTTCGGTACAGAGGTAGTATGAA 59.223 37.037 0.00 0.00 0.00 2.57
579 580 7.285566 AGTATTTCGGTACAGAGGTAGTATGA 58.714 38.462 0.00 0.00 0.00 2.15
580 581 7.507733 AGTATTTCGGTACAGAGGTAGTATG 57.492 40.000 0.00 0.00 0.00 2.39
581 582 7.559170 ACAAGTATTTCGGTACAGAGGTAGTAT 59.441 37.037 0.00 0.00 0.00 2.12
582 583 6.886459 ACAAGTATTTCGGTACAGAGGTAGTA 59.114 38.462 0.00 0.00 0.00 1.82
583 584 5.713861 ACAAGTATTTCGGTACAGAGGTAGT 59.286 40.000 0.00 0.00 0.00 2.73
584 585 6.205101 ACAAGTATTTCGGTACAGAGGTAG 57.795 41.667 0.00 0.00 0.00 3.18
585 586 6.183360 GCTACAAGTATTTCGGTACAGAGGTA 60.183 42.308 0.00 0.00 0.00 3.08
586 587 5.393896 GCTACAAGTATTTCGGTACAGAGGT 60.394 44.000 0.00 0.00 0.00 3.85
587 588 5.041940 GCTACAAGTATTTCGGTACAGAGG 58.958 45.833 0.00 0.00 0.00 3.69
588 589 5.744345 CAGCTACAAGTATTTCGGTACAGAG 59.256 44.000 0.00 0.00 0.00 3.35
589 590 5.393787 CCAGCTACAAGTATTTCGGTACAGA 60.394 44.000 0.00 0.00 0.00 3.41
590 591 4.804139 CCAGCTACAAGTATTTCGGTACAG 59.196 45.833 0.00 0.00 0.00 2.74
591 592 4.382254 CCCAGCTACAAGTATTTCGGTACA 60.382 45.833 0.00 0.00 0.00 2.90
592 593 4.117685 CCCAGCTACAAGTATTTCGGTAC 58.882 47.826 0.00 0.00 0.00 3.34
593 594 3.133362 CCCCAGCTACAAGTATTTCGGTA 59.867 47.826 0.00 0.00 0.00 4.02
594 595 2.093128 CCCCAGCTACAAGTATTTCGGT 60.093 50.000 0.00 0.00 0.00 4.69
595 596 2.169769 TCCCCAGCTACAAGTATTTCGG 59.830 50.000 0.00 0.00 0.00 4.30
596 597 3.536956 TCCCCAGCTACAAGTATTTCG 57.463 47.619 0.00 0.00 0.00 3.46
597 598 5.254115 AGTTTCCCCAGCTACAAGTATTTC 58.746 41.667 0.00 0.00 0.00 2.17
598 599 5.256806 AGTTTCCCCAGCTACAAGTATTT 57.743 39.130 0.00 0.00 0.00 1.40
599 600 4.929146 AGTTTCCCCAGCTACAAGTATT 57.071 40.909 0.00 0.00 0.00 1.89
600 601 5.030820 ACTAGTTTCCCCAGCTACAAGTAT 58.969 41.667 0.00 0.00 0.00 2.12
601 602 4.422984 ACTAGTTTCCCCAGCTACAAGTA 58.577 43.478 0.00 0.00 0.00 2.24
602 603 3.248888 ACTAGTTTCCCCAGCTACAAGT 58.751 45.455 0.00 0.00 0.00 3.16
603 604 3.369576 GGACTAGTTTCCCCAGCTACAAG 60.370 52.174 0.00 0.00 0.00 3.16
604 605 2.570302 GGACTAGTTTCCCCAGCTACAA 59.430 50.000 0.00 0.00 0.00 2.41
605 606 2.185387 GGACTAGTTTCCCCAGCTACA 58.815 52.381 0.00 0.00 0.00 2.74
606 607 1.136500 CGGACTAGTTTCCCCAGCTAC 59.864 57.143 0.00 0.00 31.03 3.58
607 608 1.481871 CGGACTAGTTTCCCCAGCTA 58.518 55.000 0.00 0.00 31.03 3.32
608 609 1.900545 GCGGACTAGTTTCCCCAGCT 61.901 60.000 0.00 0.00 31.03 4.24
609 610 1.449778 GCGGACTAGTTTCCCCAGC 60.450 63.158 0.00 0.00 31.03 4.85
610 611 1.221021 GGCGGACTAGTTTCCCCAG 59.779 63.158 0.00 0.00 31.03 4.45
611 612 1.128809 TTGGCGGACTAGTTTCCCCA 61.129 55.000 0.00 2.06 35.40 4.96
612 613 0.675837 GTTGGCGGACTAGTTTCCCC 60.676 60.000 0.00 0.00 31.03 4.81
613 614 0.323957 AGTTGGCGGACTAGTTTCCC 59.676 55.000 0.00 0.00 31.03 3.97
614 615 2.028748 TGTAGTTGGCGGACTAGTTTCC 60.029 50.000 0.00 0.00 33.04 3.13
615 616 3.308438 TGTAGTTGGCGGACTAGTTTC 57.692 47.619 0.00 0.00 33.04 2.78
616 617 3.070590 ACTTGTAGTTGGCGGACTAGTTT 59.929 43.478 0.00 0.00 33.04 2.66
617 618 2.631545 ACTTGTAGTTGGCGGACTAGTT 59.368 45.455 0.00 0.00 33.04 2.24
618 619 2.245582 ACTTGTAGTTGGCGGACTAGT 58.754 47.619 0.00 0.00 33.04 2.57
619 620 4.650754 ATACTTGTAGTTGGCGGACTAG 57.349 45.455 1.32 0.00 33.04 2.57
620 621 5.049198 CGATATACTTGTAGTTGGCGGACTA 60.049 44.000 0.00 0.00 0.00 2.59
621 622 4.261489 CGATATACTTGTAGTTGGCGGACT 60.261 45.833 0.00 0.00 0.00 3.85
622 623 3.979495 CGATATACTTGTAGTTGGCGGAC 59.021 47.826 0.00 0.00 0.00 4.79
623 624 3.005050 CCGATATACTTGTAGTTGGCGGA 59.995 47.826 0.00 0.00 37.37 5.54
624 625 3.243636 ACCGATATACTTGTAGTTGGCGG 60.244 47.826 0.00 0.00 40.67 6.13
625 626 3.973657 ACCGATATACTTGTAGTTGGCG 58.026 45.455 0.00 0.00 0.00 5.69
626 627 5.835257 TGTACCGATATACTTGTAGTTGGC 58.165 41.667 0.00 0.00 0.00 4.52
627 628 7.268199 TCTGTACCGATATACTTGTAGTTGG 57.732 40.000 0.00 0.00 0.00 3.77
628 629 7.361127 CCTCTGTACCGATATACTTGTAGTTG 58.639 42.308 0.00 0.00 0.00 3.16
629 630 6.489361 CCCTCTGTACCGATATACTTGTAGTT 59.511 42.308 0.00 0.00 0.00 2.24
630 631 6.002704 CCCTCTGTACCGATATACTTGTAGT 58.997 44.000 0.00 0.00 0.00 2.73
631 632 6.236409 TCCCTCTGTACCGATATACTTGTAG 58.764 44.000 0.00 0.00 0.00 2.74
632 633 6.183361 ACTCCCTCTGTACCGATATACTTGTA 60.183 42.308 0.00 0.00 0.00 2.41
633 634 5.057843 TCCCTCTGTACCGATATACTTGT 57.942 43.478 0.00 0.00 0.00 3.16
634 635 5.071370 ACTCCCTCTGTACCGATATACTTG 58.929 45.833 0.00 0.00 0.00 3.16
635 636 5.321934 ACTCCCTCTGTACCGATATACTT 57.678 43.478 0.00 0.00 0.00 2.24
636 637 4.997545 ACTCCCTCTGTACCGATATACT 57.002 45.455 0.00 0.00 0.00 2.12
637 638 5.803552 ACTACTCCCTCTGTACCGATATAC 58.196 45.833 0.00 0.00 0.00 1.47
638 639 7.746243 ATACTACTCCCTCTGTACCGATATA 57.254 40.000 0.00 0.00 0.00 0.86
639 640 4.997545 ACTACTCCCTCTGTACCGATAT 57.002 45.455 0.00 0.00 0.00 1.63
640 641 7.746243 ATATACTACTCCCTCTGTACCGATA 57.254 40.000 0.00 0.00 0.00 2.92
641 642 4.997545 ATACTACTCCCTCTGTACCGAT 57.002 45.455 0.00 0.00 0.00 4.18
642 643 6.728164 AGTATATACTACTCCCTCTGTACCGA 59.272 42.308 13.88 0.00 34.13 4.69
643 644 6.945218 AGTATATACTACTCCCTCTGTACCG 58.055 44.000 13.88 0.00 34.13 4.02
654 655 5.427378 GGACGGAGGGAGTATATACTACTC 58.573 50.000 25.15 25.15 42.28 2.59
655 656 4.081198 CGGACGGAGGGAGTATATACTACT 60.081 50.000 21.91 18.60 37.32 2.57
656 657 4.081420 TCGGACGGAGGGAGTATATACTAC 60.081 50.000 15.84 15.84 36.50 2.73
657 658 4.096681 TCGGACGGAGGGAGTATATACTA 58.903 47.826 15.42 0.00 36.50 1.82
658 659 2.909006 TCGGACGGAGGGAGTATATACT 59.091 50.000 15.37 15.37 39.71 2.12
659 660 3.340814 TCGGACGGAGGGAGTATATAC 57.659 52.381 4.60 4.60 0.00 1.47
660 661 4.371624 TTTCGGACGGAGGGAGTATATA 57.628 45.455 0.00 0.00 0.00 0.86
661 662 2.965671 TTCGGACGGAGGGAGTATAT 57.034 50.000 0.00 0.00 0.00 0.86
662 663 2.734755 TTTCGGACGGAGGGAGTATA 57.265 50.000 0.00 0.00 0.00 1.47
663 664 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
664 665 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
665 666 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
666 667 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
667 668 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
668 669 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
669 670 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
670 671 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
671 672 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
672 673 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
673 674 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
674 675 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
675 676 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
676 677 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
677 678 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
730 731 9.159254 TGGATAAAAGGTGATGTATCTAGACAT 57.841 33.333 0.00 0.00 42.82 3.06
731 732 8.547481 TGGATAAAAGGTGATGTATCTAGACA 57.453 34.615 0.00 0.00 0.00 3.41
736 737 9.699410 TCAAAATGGATAAAAGGTGATGTATCT 57.301 29.630 0.00 0.00 0.00 1.98
739 740 9.473007 TCATCAAAATGGATAAAAGGTGATGTA 57.527 29.630 9.42 0.00 41.09 2.29
740 741 8.253113 GTCATCAAAATGGATAAAAGGTGATGT 58.747 33.333 9.42 0.00 41.09 3.06
741 742 8.252417 TGTCATCAAAATGGATAAAAGGTGATG 58.748 33.333 0.00 0.00 41.46 3.07
742 743 8.365060 TGTCATCAAAATGGATAAAAGGTGAT 57.635 30.769 0.00 0.00 33.42 3.06
743 744 7.773489 TGTCATCAAAATGGATAAAAGGTGA 57.227 32.000 0.00 0.00 33.42 4.02
744 745 8.090214 ACTTGTCATCAAAATGGATAAAAGGTG 58.910 33.333 0.00 0.00 33.42 4.00
745 746 8.193953 ACTTGTCATCAAAATGGATAAAAGGT 57.806 30.769 0.00 0.00 33.42 3.50
751 752 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
752 753 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
753 754 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
754 755 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
755 756 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
756 757 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
757 758 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
758 759 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
759 760 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
760 761 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
761 762 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
762 763 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
763 764 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
764 765 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
765 766 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
766 767 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
767 768 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
768 769 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
769 770 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
770 771 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
771 772 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
772 773 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
773 774 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
774 775 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
775 776 1.920610 ATTATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
776 777 4.332428 AAAATTATACTCCCTCCGTCCG 57.668 45.455 0.00 0.00 0.00 4.79
777 778 5.225642 CGTAAAATTATACTCCCTCCGTCC 58.774 45.833 0.00 0.00 0.00 4.79
778 779 4.683320 GCGTAAAATTATACTCCCTCCGTC 59.317 45.833 0.00 0.00 0.00 4.79
779 780 4.502087 GGCGTAAAATTATACTCCCTCCGT 60.502 45.833 0.00 0.00 0.00 4.69
780 781 3.992427 GGCGTAAAATTATACTCCCTCCG 59.008 47.826 0.00 0.00 0.00 4.63
781 782 5.221581 TGAGGCGTAAAATTATACTCCCTCC 60.222 44.000 13.60 0.00 39.13 4.30
782 783 5.850614 TGAGGCGTAAAATTATACTCCCTC 58.149 41.667 11.15 11.15 39.68 4.30
783 784 5.881923 TGAGGCGTAAAATTATACTCCCT 57.118 39.130 0.00 0.00 32.23 4.20
784 785 5.469084 CCTTGAGGCGTAAAATTATACTCCC 59.531 44.000 0.00 0.00 32.23 4.30
785 786 6.285990 TCCTTGAGGCGTAAAATTATACTCC 58.714 40.000 0.00 0.00 32.05 3.85
786 787 7.781548 TTCCTTGAGGCGTAAAATTATACTC 57.218 36.000 0.00 0.00 34.44 2.59
830 834 9.816787 TTGACCCCTAACATAAACTTCTAAAAT 57.183 29.630 0.00 0.00 0.00 1.82
881 885 5.507637 AGCAGATCAAGAAACCATCATCTT 58.492 37.500 0.00 0.00 36.35 2.40
892 896 9.376075 CTATTTCTTGTTAGAGCAGATCAAGAA 57.624 33.333 12.51 12.51 46.31 2.52
936 940 7.047460 AGCTTGAAACAAGATGAAGACAAAT 57.953 32.000 14.44 0.00 0.00 2.32
938 942 6.205464 CCTAGCTTGAAACAAGATGAAGACAA 59.795 38.462 14.44 0.00 0.00 3.18
1023 1034 5.639506 CAGGTCACTTTGTGTAATACTCCTG 59.360 44.000 0.00 0.00 34.79 3.86
1137 1148 4.794169 CAAAACCACCTCTACCAATTTCG 58.206 43.478 0.00 0.00 0.00 3.46
1149 1160 0.973496 AAACCACCGCAAAACCACCT 60.973 50.000 0.00 0.00 0.00 4.00
1161 1172 5.067954 GGTCACCATACCATATAAACCACC 58.932 45.833 0.00 0.00 39.50 4.61
1172 1183 0.545787 AGGGAACGGTCACCATACCA 60.546 55.000 0.00 0.00 39.71 3.25
1178 1189 2.259266 TAAAACAGGGAACGGTCACC 57.741 50.000 0.00 0.00 37.98 4.02
1185 1196 6.430000 TGAGCAGTAAAGATAAAACAGGGAAC 59.570 38.462 0.00 0.00 0.00 3.62
1229 1240 9.578439 GGATATGCATGGATAAATTTAGCTTTC 57.422 33.333 11.23 0.38 0.00 2.62
1270 1281 0.251341 ACCACCCCATTCTCAAGCAC 60.251 55.000 0.00 0.00 0.00 4.40
1276 1287 2.124695 GGCGACCACCCCATTCTC 60.125 66.667 0.00 0.00 0.00 2.87
1286 1297 1.255882 TAACCTCTTTACGGCGACCA 58.744 50.000 16.62 0.00 0.00 4.02
1385 1396 4.259356 GTCAACACAATACCCTAGGAACC 58.741 47.826 11.48 0.00 0.00 3.62
1431 1442 6.531503 TCGGCCATAACAATTTTTCCATTA 57.468 33.333 2.24 0.00 0.00 1.90
1444 1455 7.907214 ATCTTTCTTGTATATCGGCCATAAC 57.093 36.000 2.24 2.89 0.00 1.89
1455 1466 8.023128 GCAAAGCAGAACAATCTTTCTTGTATA 58.977 33.333 0.00 0.00 38.38 1.47
1456 1467 6.865205 GCAAAGCAGAACAATCTTTCTTGTAT 59.135 34.615 0.00 0.00 38.38 2.29
1471 1482 5.753438 CGTTAGGTAGATATGCAAAGCAGAA 59.247 40.000 0.00 0.00 43.65 3.02
1473 1484 4.449068 CCGTTAGGTAGATATGCAAAGCAG 59.551 45.833 0.00 0.00 43.65 4.24
1515 1526 3.584834 GCGGCACATGATTTTACCTTTT 58.415 40.909 0.00 0.00 0.00 2.27
1523 1534 1.832883 TGTTAGGCGGCACATGATTT 58.167 45.000 13.08 0.00 0.00 2.17
1524 1535 2.057137 ATGTTAGGCGGCACATGATT 57.943 45.000 13.08 0.00 32.19 2.57
1534 1545 5.613358 AAAGTGAAGAGAAATGTTAGGCG 57.387 39.130 0.00 0.00 0.00 5.52
1556 1567 6.566079 AGTCACCTTCAATGGAGATGATAA 57.434 37.500 0.00 0.00 0.00 1.75
1560 1571 3.693085 CCAAGTCACCTTCAATGGAGATG 59.307 47.826 0.00 0.00 0.00 2.90
1565 1576 3.221771 TGAACCAAGTCACCTTCAATGG 58.778 45.455 0.00 0.00 0.00 3.16
1587 1598 1.264020 CAAACACATGCACGTGCTACT 59.736 47.619 37.59 21.31 40.73 2.57
1589 1600 1.587547 TCAAACACATGCACGTGCTA 58.412 45.000 37.59 25.26 40.73 3.49
1595 1606 7.145323 AGGTAAATAACTTCAAACACATGCAC 58.855 34.615 0.00 0.00 0.00 4.57
1601 1612 8.920509 ACAACAAGGTAAATAACTTCAAACAC 57.079 30.769 0.00 0.00 0.00 3.32
1604 1615 9.738832 GCTTACAACAAGGTAAATAACTTCAAA 57.261 29.630 0.00 0.00 33.18 2.69
1610 1621 8.953313 ACCATAGCTTACAACAAGGTAAATAAC 58.047 33.333 0.00 0.00 34.43 1.89
1612 1623 7.066525 GCACCATAGCTTACAACAAGGTAAATA 59.933 37.037 0.00 0.00 34.43 1.40
1620 1631 8.512966 TTATATTGCACCATAGCTTACAACAA 57.487 30.769 0.00 0.00 34.99 2.83
1643 1654 9.793259 ACTGAGACATTTCACCTCTTTAATTTA 57.207 29.630 0.00 0.00 0.00 1.40
1672 1683 1.631898 TGAGTTAGGGGGTTTAGTGCC 59.368 52.381 0.00 0.00 0.00 5.01
1708 1719 4.933134 TCCATTCAATTCCACAAGATCCA 58.067 39.130 0.00 0.00 0.00 3.41
1709 1720 5.920193 TTCCATTCAATTCCACAAGATCC 57.080 39.130 0.00 0.00 0.00 3.36
1710 1721 7.153985 TGTTTTCCATTCAATTCCACAAGATC 58.846 34.615 0.00 0.00 0.00 2.75
1743 1754 6.443849 TCCCTCACATATCCCCTTGATTATAC 59.556 42.308 0.00 0.00 34.76 1.47
1780 1791 7.330946 TCGAGGTGCATAATATTTATACTGTGC 59.669 37.037 0.00 0.00 0.00 4.57
1895 1906 0.106335 TTTGTAGCAACGGTTCGGGA 59.894 50.000 0.00 0.00 0.00 5.14
1899 1910 5.118510 CCAATCATTTTTGTAGCAACGGTTC 59.881 40.000 0.00 0.00 0.00 3.62
1904 1915 5.918011 TCGTTCCAATCATTTTTGTAGCAAC 59.082 36.000 0.00 0.00 0.00 4.17
1944 1955 9.853177 AAGATAAAGGCTTAGCTTACAATATGT 57.147 29.630 3.59 0.00 40.97 2.29
1999 2010 6.012658 TCCACTGCATGAAAACAAATAGAC 57.987 37.500 0.00 0.00 0.00 2.59
2025 2036 1.243342 TGTGGAATTCTGGCGCCAAG 61.243 55.000 32.09 23.34 31.18 3.61
2086 2097 8.258007 TCCGGTCAATATCTCCATGATTATAAC 58.742 37.037 0.00 0.00 36.65 1.89
2094 2105 4.960938 TCTTTCCGGTCAATATCTCCATG 58.039 43.478 0.00 0.00 0.00 3.66
2178 2191 7.704472 GCCTAAGGTGATTGATCTATTATCGAG 59.296 40.741 0.00 0.00 0.00 4.04
2189 2202 4.702131 GTGTTCAAGCCTAAGGTGATTGAT 59.298 41.667 0.00 0.00 30.56 2.57
2197 2210 1.896220 TGCAGTGTTCAAGCCTAAGG 58.104 50.000 0.00 0.00 0.00 2.69
2254 2267 9.154847 TCAGATGTACACTTTCACAAATGATAG 57.845 33.333 0.00 0.00 39.19 2.08
2266 2279 6.149474 GCTTTGTACCATCAGATGTACACTTT 59.851 38.462 18.13 0.00 32.82 2.66
2281 2294 3.093814 TCCTCGATACTGCTTTGTACCA 58.906 45.455 0.00 0.00 0.00 3.25
2282 2295 3.795623 TCCTCGATACTGCTTTGTACC 57.204 47.619 0.00 0.00 0.00 3.34
2286 2299 7.539712 TCTATTTTTCCTCGATACTGCTTTG 57.460 36.000 0.00 0.00 0.00 2.77
2291 2304 8.703604 TCAAGTTCTATTTTTCCTCGATACTG 57.296 34.615 0.00 0.00 0.00 2.74
2297 2310 8.662781 TCCATATCAAGTTCTATTTTTCCTCG 57.337 34.615 0.00 0.00 0.00 4.63
2317 2330 9.034800 ACCAAGAATGCTAATTTTCTTTCCATA 57.965 29.630 0.98 0.00 39.53 2.74
2322 2335 9.088987 TCCTTACCAAGAATGCTAATTTTCTTT 57.911 29.630 0.98 0.00 39.53 2.52
2329 2342 9.034800 TCAATTTTCCTTACCAAGAATGCTAAT 57.965 29.630 0.00 0.00 0.00 1.73
2337 2350 7.508977 AGTTTCCATCAATTTTCCTTACCAAGA 59.491 33.333 0.00 0.00 0.00 3.02
2423 2471 7.619302 AGCCCAAATAGTCCAAGATGAAAAATA 59.381 33.333 0.00 0.00 0.00 1.40
2425 2473 5.779771 AGCCCAAATAGTCCAAGATGAAAAA 59.220 36.000 0.00 0.00 0.00 1.94
2426 2474 5.332743 AGCCCAAATAGTCCAAGATGAAAA 58.667 37.500 0.00 0.00 0.00 2.29
2427 2475 4.934356 AGCCCAAATAGTCCAAGATGAAA 58.066 39.130 0.00 0.00 0.00 2.69
2428 2476 4.526970 GAGCCCAAATAGTCCAAGATGAA 58.473 43.478 0.00 0.00 0.00 2.57
2429 2477 3.117888 GGAGCCCAAATAGTCCAAGATGA 60.118 47.826 0.00 0.00 0.00 2.92
2430 2478 3.117738 AGGAGCCCAAATAGTCCAAGATG 60.118 47.826 0.00 0.00 0.00 2.90
2431 2479 3.117738 CAGGAGCCCAAATAGTCCAAGAT 60.118 47.826 0.00 0.00 0.00 2.40
2432 2480 2.239654 CAGGAGCCCAAATAGTCCAAGA 59.760 50.000 0.00 0.00 0.00 3.02
2433 2481 2.648059 CAGGAGCCCAAATAGTCCAAG 58.352 52.381 0.00 0.00 0.00 3.61
2434 2482 1.340991 GCAGGAGCCCAAATAGTCCAA 60.341 52.381 0.00 0.00 33.58 3.53
2435 2483 0.255890 GCAGGAGCCCAAATAGTCCA 59.744 55.000 0.00 0.00 33.58 4.02
2436 2484 0.548510 AGCAGGAGCCCAAATAGTCC 59.451 55.000 0.00 0.00 43.56 3.85
2484 2532 8.529476 TCCTTGTAGTCTTTTTAGTAGTGATCC 58.471 37.037 0.00 0.00 0.00 3.36
2499 2547 4.338795 TCTTCATCCCTCCTTGTAGTCT 57.661 45.455 0.00 0.00 0.00 3.24
2512 2560 6.402658 GGTTCGACTCAAGAAAATCTTCATCC 60.403 42.308 0.00 0.00 33.78 3.51
2513 2561 6.402658 GGGTTCGACTCAAGAAAATCTTCATC 60.403 42.308 0.00 0.00 33.78 2.92
2517 2565 4.974399 AGGGTTCGACTCAAGAAAATCTT 58.026 39.130 0.00 0.00 37.14 2.40
2521 2569 7.393841 TTTAAAAGGGTTCGACTCAAGAAAA 57.606 32.000 0.00 0.00 0.00 2.29
2524 2572 5.472137 CCATTTAAAAGGGTTCGACTCAAGA 59.528 40.000 1.33 0.00 0.00 3.02
2525 2573 5.472137 TCCATTTAAAAGGGTTCGACTCAAG 59.528 40.000 9.49 0.00 0.00 3.02
2526 2574 5.378332 TCCATTTAAAAGGGTTCGACTCAA 58.622 37.500 9.49 0.00 0.00 3.02
2527 2575 4.975631 TCCATTTAAAAGGGTTCGACTCA 58.024 39.130 9.49 0.00 0.00 3.41
2528 2576 5.646360 TGATCCATTTAAAAGGGTTCGACTC 59.354 40.000 9.49 0.00 0.00 3.36
2529 2577 5.566469 TGATCCATTTAAAAGGGTTCGACT 58.434 37.500 9.49 0.00 0.00 4.18
2530 2578 5.646360 TCTGATCCATTTAAAAGGGTTCGAC 59.354 40.000 9.49 0.00 0.00 4.20
2531 2579 5.811190 TCTGATCCATTTAAAAGGGTTCGA 58.189 37.500 9.49 9.03 0.00 3.71
2532 2580 6.404734 CCTTCTGATCCATTTAAAAGGGTTCG 60.405 42.308 9.49 7.38 0.00 3.95
2533 2581 6.437477 ACCTTCTGATCCATTTAAAAGGGTTC 59.563 38.462 9.49 10.37 36.86 3.62
2535 2583 5.903923 ACCTTCTGATCCATTTAAAAGGGT 58.096 37.500 9.49 1.93 36.86 4.34
2536 2584 6.857437 AACCTTCTGATCCATTTAAAAGGG 57.143 37.500 9.49 6.31 36.86 3.95
2537 2585 8.588472 AGAAAACCTTCTGATCCATTTAAAAGG 58.412 33.333 2.95 2.95 40.54 3.11
2538 2586 9.987272 AAGAAAACCTTCTGATCCATTTAAAAG 57.013 29.630 0.00 0.00 41.23 2.27
2540 2588 9.142014 TCAAGAAAACCTTCTGATCCATTTAAA 57.858 29.630 0.00 0.00 41.23 1.52
2541 2589 8.704849 TCAAGAAAACCTTCTGATCCATTTAA 57.295 30.769 0.00 0.00 41.23 1.52
2542 2590 7.944554 ACTCAAGAAAACCTTCTGATCCATTTA 59.055 33.333 0.00 0.00 41.23 1.40
2543 2591 6.779539 ACTCAAGAAAACCTTCTGATCCATTT 59.220 34.615 0.00 0.00 41.23 2.32
2544 2592 6.310149 ACTCAAGAAAACCTTCTGATCCATT 58.690 36.000 0.00 0.00 41.23 3.16
2545 2593 5.885465 ACTCAAGAAAACCTTCTGATCCAT 58.115 37.500 0.00 0.00 41.23 3.41
2546 2594 5.308825 GACTCAAGAAAACCTTCTGATCCA 58.691 41.667 0.00 0.00 41.23 3.41
2547 2595 4.390297 CGACTCAAGAAAACCTTCTGATCC 59.610 45.833 0.00 0.00 41.23 3.36
2548 2596 4.143009 GCGACTCAAGAAAACCTTCTGATC 60.143 45.833 0.00 0.00 41.23 2.92
2549 2597 3.748568 GCGACTCAAGAAAACCTTCTGAT 59.251 43.478 0.00 0.00 41.23 2.90
2550 2598 3.131396 GCGACTCAAGAAAACCTTCTGA 58.869 45.455 0.00 0.00 41.23 3.27
2551 2599 2.872245 TGCGACTCAAGAAAACCTTCTG 59.128 45.455 0.00 0.00 41.23 3.02
2552 2600 3.194005 TGCGACTCAAGAAAACCTTCT 57.806 42.857 0.00 0.00 44.11 2.85
2553 2601 5.179555 ACTTATGCGACTCAAGAAAACCTTC 59.820 40.000 0.00 0.00 31.42 3.46
2554 2602 5.063880 ACTTATGCGACTCAAGAAAACCTT 58.936 37.500 0.00 0.00 34.91 3.50
2555 2603 4.642429 ACTTATGCGACTCAAGAAAACCT 58.358 39.130 0.00 0.00 0.00 3.50
2556 2604 5.358298 AACTTATGCGACTCAAGAAAACC 57.642 39.130 0.00 0.00 0.00 3.27
2627 2675 8.397148 ACCATGAAAATTGCACTTTTAAGTTTG 58.603 29.630 14.01 3.84 37.08 2.93
2665 2713 2.755103 TGCGCTCTCTCATAGTTTCTCA 59.245 45.455 9.73 0.00 0.00 3.27
2682 2730 4.661125 TCAAATTACAACAGATGATGCGC 58.339 39.130 0.00 0.00 0.00 6.09
2684 2732 8.692110 TCAATTCAAATTACAACAGATGATGC 57.308 30.769 0.00 0.00 0.00 3.91
2705 2755 7.174253 ACACGTAAAGTCATAAACCACATCAAT 59.826 33.333 0.00 0.00 0.00 2.57
2719 2769 3.054166 CCGATGTTGACACGTAAAGTCA 58.946 45.455 3.28 3.28 43.72 3.41
2747 2799 6.618592 GCACATATGTATTCTGTATGCGAACC 60.619 42.308 8.32 0.00 30.76 3.62
2757 2809 9.849607 CGTAAACTAAAGCACATATGTATTCTG 57.150 33.333 8.32 5.99 0.00 3.02
2777 2829 6.192234 TCAGAGACATCTCCTTACGTAAAC 57.808 41.667 9.68 0.00 43.88 2.01
2781 2833 3.886505 GGATCAGAGACATCTCCTTACGT 59.113 47.826 5.25 0.00 43.88 3.57
2782 2834 3.885901 TGGATCAGAGACATCTCCTTACG 59.114 47.826 5.25 0.00 43.88 3.18
2795 2849 9.091784 CCATATTGTATACGAAATGGATCAGAG 57.908 37.037 18.52 0.00 36.76 3.35
2815 2869 6.324512 TCAAGCACCTATGAAATTGCCATATT 59.675 34.615 0.00 0.00 35.47 1.28
2823 2877 6.267471 TCCAACTTTCAAGCACCTATGAAATT 59.733 34.615 1.86 0.00 42.72 1.82
2829 2883 4.469657 TGTTCCAACTTTCAAGCACCTAT 58.530 39.130 0.00 0.00 0.00 2.57
2852 2906 4.809193 TCTCTGTGATAGCTCCAACCTAT 58.191 43.478 0.00 0.00 0.00 2.57
2872 2926 8.788806 TCGTATTTGTTCATAATGTTGGTTTCT 58.211 29.630 0.00 0.00 0.00 2.52
2880 2934 6.542852 GCACACTCGTATTTGTTCATAATGT 58.457 36.000 0.00 0.00 0.00 2.71
2900 2954 0.035152 AATCCCAATCTCAGCGCACA 60.035 50.000 11.47 0.00 0.00 4.57
2901 2955 0.379669 CAATCCCAATCTCAGCGCAC 59.620 55.000 11.47 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.