Multiple sequence alignment - TraesCS2D01G380500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G380500 | chr2D | 100.000 | 5918 | 0 | 0 | 1 | 5918 | 484857811 | 484863728 | 0.000000e+00 | 10929.0 |
1 | TraesCS2D01G380500 | chr2D | 89.913 | 3004 | 247 | 27 | 2166 | 5140 | 484911785 | 484914761 | 0.000000e+00 | 3818.0 |
2 | TraesCS2D01G380500 | chr2D | 91.056 | 2359 | 170 | 21 | 1936 | 4275 | 484882918 | 484885254 | 0.000000e+00 | 3149.0 |
3 | TraesCS2D01G380500 | chr2D | 95.941 | 1010 | 38 | 1 | 4310 | 5319 | 484885256 | 484886262 | 0.000000e+00 | 1635.0 |
4 | TraesCS2D01G380500 | chr2D | 92.308 | 741 | 39 | 7 | 1033 | 1770 | 484882206 | 484882931 | 0.000000e+00 | 1037.0 |
5 | TraesCS2D01G380500 | chr2D | 94.764 | 191 | 9 | 1 | 1472 | 1662 | 484910924 | 484911113 | 4.480000e-76 | 296.0 |
6 | TraesCS2D01G380500 | chr2D | 88.272 | 162 | 17 | 2 | 1936 | 2096 | 484911611 | 484911771 | 6.050000e-45 | 193.0 |
7 | TraesCS2D01G380500 | chr2D | 91.150 | 113 | 10 | 0 | 1654 | 1766 | 484911508 | 484911620 | 2.860000e-33 | 154.0 |
8 | TraesCS2D01G380500 | chr2B | 93.422 | 5458 | 262 | 53 | 354 | 5767 | 569522463 | 569527867 | 0.000000e+00 | 8000.0 |
9 | TraesCS2D01G380500 | chr2A | 94.107 | 2766 | 136 | 13 | 1936 | 4691 | 628745150 | 628747898 | 0.000000e+00 | 4180.0 |
10 | TraesCS2D01G380500 | chr2A | 92.921 | 1568 | 82 | 13 | 211 | 1774 | 628743625 | 628745167 | 0.000000e+00 | 2254.0 |
11 | TraesCS2D01G380500 | chr2A | 82.240 | 625 | 75 | 22 | 4719 | 5334 | 628747897 | 628748494 | 1.900000e-139 | 507.0 |
12 | TraesCS2D01G380500 | chr2A | 78.543 | 494 | 80 | 19 | 5347 | 5826 | 628748638 | 628749119 | 9.640000e-78 | 302.0 |
13 | TraesCS2D01G380500 | chr3D | 94.737 | 133 | 2 | 1 | 1777 | 1904 | 331016717 | 331016585 | 1.010000e-47 | 202.0 |
14 | TraesCS2D01G380500 | chr7B | 88.372 | 172 | 9 | 4 | 1777 | 1938 | 622266298 | 622266468 | 4.680000e-46 | 196.0 |
15 | TraesCS2D01G380500 | chr7A | 92.254 | 142 | 5 | 2 | 1768 | 1904 | 83784827 | 83784967 | 4.680000e-46 | 196.0 |
16 | TraesCS2D01G380500 | chr3A | 88.820 | 161 | 9 | 5 | 1749 | 1904 | 724319132 | 724318976 | 7.830000e-44 | 189.0 |
17 | TraesCS2D01G380500 | chr3A | 87.500 | 168 | 14 | 3 | 1775 | 1937 | 699981784 | 699981619 | 2.820000e-43 | 187.0 |
18 | TraesCS2D01G380500 | chr5A | 89.933 | 149 | 9 | 2 | 1761 | 1904 | 664553038 | 664552891 | 2.820000e-43 | 187.0 |
19 | TraesCS2D01G380500 | chr6A | 86.982 | 169 | 16 | 2 | 1766 | 1929 | 559732848 | 559732681 | 1.010000e-42 | 185.0 |
20 | TraesCS2D01G380500 | chr7D | 86.550 | 171 | 13 | 4 | 1774 | 1939 | 120323636 | 120323471 | 4.710000e-41 | 180.0 |
21 | TraesCS2D01G380500 | chr4A | 84.733 | 131 | 20 | 0 | 1059 | 1189 | 730153062 | 730153192 | 1.340000e-26 | 132.0 |
22 | TraesCS2D01G380500 | chr5B | 85.714 | 112 | 16 | 0 | 1078 | 1189 | 624640698 | 624640587 | 1.040000e-22 | 119.0 |
23 | TraesCS2D01G380500 | chr5B | 78.195 | 133 | 26 | 3 | 1059 | 1189 | 623367576 | 623367707 | 1.370000e-11 | 82.4 |
24 | TraesCS2D01G380500 | chr5B | 78.195 | 133 | 26 | 3 | 1059 | 1189 | 627010924 | 627011055 | 1.370000e-11 | 82.4 |
25 | TraesCS2D01G380500 | chr5B | 78.195 | 133 | 26 | 3 | 1059 | 1189 | 627885857 | 627885988 | 1.370000e-11 | 82.4 |
26 | TraesCS2D01G380500 | chr5B | 77.863 | 131 | 26 | 3 | 1059 | 1187 | 624305174 | 624305303 | 1.770000e-10 | 78.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G380500 | chr2D | 484857811 | 484863728 | 5917 | False | 10929.000000 | 10929 | 100.000000 | 1 | 5918 | 1 | chr2D.!!$F1 | 5917 |
1 | TraesCS2D01G380500 | chr2D | 484882206 | 484886262 | 4056 | False | 1940.333333 | 3149 | 93.101667 | 1033 | 5319 | 3 | chr2D.!!$F2 | 4286 |
2 | TraesCS2D01G380500 | chr2D | 484910924 | 484914761 | 3837 | False | 1115.250000 | 3818 | 91.024750 | 1472 | 5140 | 4 | chr2D.!!$F3 | 3668 |
3 | TraesCS2D01G380500 | chr2B | 569522463 | 569527867 | 5404 | False | 8000.000000 | 8000 | 93.422000 | 354 | 5767 | 1 | chr2B.!!$F1 | 5413 |
4 | TraesCS2D01G380500 | chr2A | 628743625 | 628749119 | 5494 | False | 1810.750000 | 4180 | 86.952750 | 211 | 5826 | 4 | chr2A.!!$F1 | 5615 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
622 | 628 | 0.032130 | TGACTCTTCCACACGCAGTC | 59.968 | 55.000 | 0.00 | 0.00 | 41.61 | 3.51 | F |
794 | 803 | 0.250513 | GACTTCTTCGTGCCTCCCAT | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 | F |
849 | 858 | 0.538584 | TCAGTCGCCATCAGCAGAAT | 59.461 | 50.000 | 0.00 | 0.00 | 44.04 | 2.40 | F |
989 | 998 | 1.143813 | CATCTTCCATGCCTACCCCT | 58.856 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 | F |
1907 | 2320 | 1.068417 | CTCGAACCCGTGACCACAA | 59.932 | 57.895 | 0.85 | 0.00 | 37.05 | 3.33 | F |
2892 | 3343 | 1.160137 | CTAGTGCAGCAGTTGAACCC | 58.840 | 55.000 | 8.38 | 0.00 | 35.77 | 4.11 | F |
2953 | 3404 | 1.531602 | GCCCAAAGTTGTGGAGGCT | 60.532 | 57.895 | 0.00 | 0.00 | 41.65 | 4.58 | F |
4321 | 4784 | 2.154567 | AATGCAGGACCATGCTTCAT | 57.845 | 45.000 | 14.46 | 1.26 | 46.63 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1879 | 2292 | 0.249398 | CGGGTTCGAGTCCTGGAAAT | 59.751 | 55.000 | 0.0 | 0.0 | 39.00 | 2.17 | R |
1904 | 2317 | 0.464735 | TGGCACAGCGGTAAAGTTGT | 60.465 | 50.000 | 0.0 | 0.0 | 35.97 | 3.32 | R |
1907 | 2320 | 0.889186 | CCTTGGCACAGCGGTAAAGT | 60.889 | 55.000 | 0.0 | 0.0 | 42.39 | 2.66 | R |
2953 | 3404 | 3.814625 | TGACATTGAGTGCAAGTGGTAA | 58.185 | 40.909 | 0.0 | 0.0 | 37.45 | 2.85 | R |
3096 | 3547 | 1.758440 | GAGTGGGTGTGAGCCTGTCA | 61.758 | 60.000 | 0.0 | 0.0 | 36.53 | 3.58 | R |
4591 | 5054 | 0.842030 | TCCAGACATGCCACCTCCTT | 60.842 | 55.000 | 0.0 | 0.0 | 0.00 | 3.36 | R |
4638 | 5101 | 3.421919 | AAGCCATTGAAATTGGGGTTG | 57.578 | 42.857 | 0.0 | 0.0 | 39.46 | 3.77 | R |
5581 | 6190 | 0.033228 | GCAGATCTCCCGATGACAGG | 59.967 | 60.000 | 0.0 | 0.0 | 0.00 | 4.00 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 3.727146 | GCACGTCGAACCTTGGTT | 58.273 | 55.556 | 4.52 | 4.52 | 0.00 | 3.67 |
18 | 19 | 2.903284 | GCACGTCGAACCTTGGTTA | 58.097 | 52.632 | 4.88 | 0.00 | 0.00 | 2.85 |
19 | 20 | 1.219646 | GCACGTCGAACCTTGGTTAA | 58.780 | 50.000 | 4.88 | 0.00 | 0.00 | 2.01 |
20 | 21 | 1.802365 | GCACGTCGAACCTTGGTTAAT | 59.198 | 47.619 | 4.88 | 0.00 | 0.00 | 1.40 |
21 | 22 | 2.159747 | GCACGTCGAACCTTGGTTAATC | 60.160 | 50.000 | 4.88 | 0.00 | 0.00 | 1.75 |
22 | 23 | 2.091588 | CACGTCGAACCTTGGTTAATCG | 59.908 | 50.000 | 4.88 | 11.64 | 34.98 | 3.34 |
23 | 24 | 2.288395 | ACGTCGAACCTTGGTTAATCGT | 60.288 | 45.455 | 16.24 | 16.24 | 35.20 | 3.73 |
24 | 25 | 2.091588 | CGTCGAACCTTGGTTAATCGTG | 59.908 | 50.000 | 4.88 | 0.32 | 35.20 | 4.35 |
25 | 26 | 3.319755 | GTCGAACCTTGGTTAATCGTGA | 58.680 | 45.455 | 4.88 | 0.00 | 35.20 | 4.35 |
26 | 27 | 3.742369 | GTCGAACCTTGGTTAATCGTGAA | 59.258 | 43.478 | 4.88 | 0.00 | 35.20 | 3.18 |
27 | 28 | 4.390909 | GTCGAACCTTGGTTAATCGTGAAT | 59.609 | 41.667 | 4.88 | 0.00 | 35.20 | 2.57 |
28 | 29 | 5.577945 | GTCGAACCTTGGTTAATCGTGAATA | 59.422 | 40.000 | 4.88 | 0.00 | 35.20 | 1.75 |
29 | 30 | 5.808540 | TCGAACCTTGGTTAATCGTGAATAG | 59.191 | 40.000 | 4.88 | 0.00 | 35.20 | 1.73 |
30 | 31 | 5.579511 | CGAACCTTGGTTAATCGTGAATAGT | 59.420 | 40.000 | 4.88 | 0.00 | 0.00 | 2.12 |
31 | 32 | 6.753279 | CGAACCTTGGTTAATCGTGAATAGTA | 59.247 | 38.462 | 4.88 | 0.00 | 0.00 | 1.82 |
32 | 33 | 7.253883 | CGAACCTTGGTTAATCGTGAATAGTAC | 60.254 | 40.741 | 4.88 | 0.00 | 0.00 | 2.73 |
33 | 34 | 7.179076 | ACCTTGGTTAATCGTGAATAGTACT | 57.821 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
34 | 35 | 7.039882 | ACCTTGGTTAATCGTGAATAGTACTG | 58.960 | 38.462 | 5.39 | 0.00 | 0.00 | 2.74 |
35 | 36 | 6.479001 | CCTTGGTTAATCGTGAATAGTACTGG | 59.521 | 42.308 | 5.39 | 0.00 | 0.00 | 4.00 |
36 | 37 | 5.353938 | TGGTTAATCGTGAATAGTACTGGC | 58.646 | 41.667 | 5.39 | 0.00 | 0.00 | 4.85 |
37 | 38 | 5.128171 | TGGTTAATCGTGAATAGTACTGGCT | 59.872 | 40.000 | 5.39 | 0.00 | 0.00 | 4.75 |
38 | 39 | 5.690857 | GGTTAATCGTGAATAGTACTGGCTC | 59.309 | 44.000 | 5.39 | 0.00 | 0.00 | 4.70 |
39 | 40 | 6.270815 | GTTAATCGTGAATAGTACTGGCTCA | 58.729 | 40.000 | 5.39 | 2.50 | 0.00 | 4.26 |
40 | 41 | 5.537300 | AATCGTGAATAGTACTGGCTCAT | 57.463 | 39.130 | 5.39 | 0.00 | 0.00 | 2.90 |
41 | 42 | 5.537300 | ATCGTGAATAGTACTGGCTCATT | 57.463 | 39.130 | 5.39 | 0.00 | 0.00 | 2.57 |
42 | 43 | 4.933330 | TCGTGAATAGTACTGGCTCATTC | 58.067 | 43.478 | 5.39 | 6.99 | 0.00 | 2.67 |
43 | 44 | 4.051922 | CGTGAATAGTACTGGCTCATTCC | 58.948 | 47.826 | 5.39 | 0.77 | 0.00 | 3.01 |
44 | 45 | 4.051922 | GTGAATAGTACTGGCTCATTCCG | 58.948 | 47.826 | 5.39 | 0.00 | 0.00 | 4.30 |
45 | 46 | 3.704566 | TGAATAGTACTGGCTCATTCCGT | 59.295 | 43.478 | 5.39 | 0.00 | 0.00 | 4.69 |
46 | 47 | 3.735237 | ATAGTACTGGCTCATTCCGTG | 57.265 | 47.619 | 5.39 | 0.00 | 0.00 | 4.94 |
47 | 48 | 0.108138 | AGTACTGGCTCATTCCGTGC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
48 | 49 | 1.153647 | TACTGGCTCATTCCGTGCG | 60.154 | 57.895 | 0.00 | 0.00 | 34.86 | 5.34 |
49 | 50 | 3.869272 | CTGGCTCATTCCGTGCGC | 61.869 | 66.667 | 0.00 | 0.00 | 37.82 | 6.09 |
64 | 65 | 2.436646 | CGCGGAAAGGCACTGGAT | 60.437 | 61.111 | 0.00 | 0.00 | 40.86 | 3.41 |
65 | 66 | 2.753966 | CGCGGAAAGGCACTGGATG | 61.754 | 63.158 | 0.00 | 0.00 | 40.86 | 3.51 |
66 | 67 | 2.409870 | GCGGAAAGGCACTGGATGG | 61.410 | 63.158 | 0.00 | 0.00 | 40.86 | 3.51 |
73 | 74 | 3.583383 | GCACTGGATGGCACTCAC | 58.417 | 61.111 | 0.00 | 0.00 | 0.00 | 3.51 |
74 | 75 | 2.393768 | GCACTGGATGGCACTCACG | 61.394 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
75 | 76 | 1.742880 | CACTGGATGGCACTCACGG | 60.743 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
76 | 77 | 2.821366 | CTGGATGGCACTCACGGC | 60.821 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
77 | 78 | 4.758251 | TGGATGGCACTCACGGCG | 62.758 | 66.667 | 4.80 | 4.80 | 0.00 | 6.46 |
78 | 79 | 4.451150 | GGATGGCACTCACGGCGA | 62.451 | 66.667 | 16.62 | 0.00 | 0.00 | 5.54 |
93 | 94 | 3.190849 | CGAGCCTGCGATGGTGTG | 61.191 | 66.667 | 0.00 | 0.00 | 0.00 | 3.82 |
94 | 95 | 3.503363 | GAGCCTGCGATGGTGTGC | 61.503 | 66.667 | 0.00 | 0.00 | 0.00 | 4.57 |
97 | 98 | 2.584064 | CCTGCGATGGTGTGCCTA | 59.416 | 61.111 | 0.00 | 0.00 | 35.27 | 3.93 |
98 | 99 | 1.815421 | CCTGCGATGGTGTGCCTAC | 60.815 | 63.158 | 0.00 | 0.00 | 35.27 | 3.18 |
99 | 100 | 2.125713 | TGCGATGGTGTGCCTACG | 60.126 | 61.111 | 0.00 | 0.00 | 37.19 | 3.51 |
100 | 101 | 2.890474 | GCGATGGTGTGCCTACGG | 60.890 | 66.667 | 0.00 | 0.00 | 35.73 | 4.02 |
115 | 116 | 2.663196 | CGGCTCTTCCCCGTTCTT | 59.337 | 61.111 | 0.00 | 0.00 | 40.84 | 2.52 |
116 | 117 | 1.448013 | CGGCTCTTCCCCGTTCTTC | 60.448 | 63.158 | 0.00 | 0.00 | 40.84 | 2.87 |
117 | 118 | 1.078356 | GGCTCTTCCCCGTTCTTCC | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
118 | 119 | 1.078356 | GCTCTTCCCCGTTCTTCCC | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 3.97 |
119 | 120 | 1.602771 | CTCTTCCCCGTTCTTCCCC | 59.397 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
120 | 121 | 2.240162 | CTCTTCCCCGTTCTTCCCCG | 62.240 | 65.000 | 0.00 | 0.00 | 0.00 | 5.73 |
121 | 122 | 3.971109 | CTTCCCCGTTCTTCCCCGC | 62.971 | 68.421 | 0.00 | 0.00 | 0.00 | 6.13 |
124 | 125 | 4.468689 | CCCGTTCTTCCCCGCCTC | 62.469 | 72.222 | 0.00 | 0.00 | 0.00 | 4.70 |
125 | 126 | 4.468689 | CCGTTCTTCCCCGCCTCC | 62.469 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
126 | 127 | 4.814294 | CGTTCTTCCCCGCCTCCG | 62.814 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
143 | 144 | 3.787001 | GGCCTCCCGTCTGGAAGG | 61.787 | 72.222 | 0.00 | 0.00 | 44.57 | 3.46 |
144 | 145 | 4.475135 | GCCTCCCGTCTGGAAGGC | 62.475 | 72.222 | 0.00 | 0.00 | 44.57 | 4.35 |
152 | 153 | 2.544726 | GTCTGGAAGGCGACAAAGG | 58.455 | 57.895 | 0.00 | 0.00 | 0.00 | 3.11 |
153 | 154 | 0.034896 | GTCTGGAAGGCGACAAAGGA | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
154 | 155 | 0.321671 | TCTGGAAGGCGACAAAGGAG | 59.678 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
155 | 156 | 0.674895 | CTGGAAGGCGACAAAGGAGG | 60.675 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
156 | 157 | 1.377333 | GGAAGGCGACAAAGGAGGG | 60.377 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
157 | 158 | 1.677552 | GAAGGCGACAAAGGAGGGA | 59.322 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
158 | 159 | 0.036306 | GAAGGCGACAAAGGAGGGAA | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
159 | 160 | 0.036875 | AAGGCGACAAAGGAGGGAAG | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
160 | 161 | 1.377333 | GGCGACAAAGGAGGGAAGG | 60.377 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
161 | 162 | 1.375326 | GCGACAAAGGAGGGAAGGT | 59.625 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
162 | 163 | 0.673956 | GCGACAAAGGAGGGAAGGTC | 60.674 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
163 | 164 | 0.685097 | CGACAAAGGAGGGAAGGTCA | 59.315 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
164 | 165 | 1.608283 | CGACAAAGGAGGGAAGGTCAC | 60.608 | 57.143 | 0.00 | 0.00 | 0.00 | 3.67 |
165 | 166 | 0.771755 | ACAAAGGAGGGAAGGTCACC | 59.228 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
166 | 167 | 1.068121 | CAAAGGAGGGAAGGTCACCT | 58.932 | 55.000 | 0.00 | 0.00 | 40.54 | 4.00 |
167 | 168 | 2.266279 | CAAAGGAGGGAAGGTCACCTA | 58.734 | 52.381 | 0.00 | 0.00 | 37.18 | 3.08 |
168 | 169 | 2.237392 | CAAAGGAGGGAAGGTCACCTAG | 59.763 | 54.545 | 0.00 | 0.00 | 37.18 | 3.02 |
169 | 170 | 0.325765 | AGGAGGGAAGGTCACCTAGC | 60.326 | 60.000 | 0.00 | 0.00 | 37.18 | 3.42 |
170 | 171 | 0.325765 | GGAGGGAAGGTCACCTAGCT | 60.326 | 60.000 | 0.00 | 0.00 | 37.18 | 3.32 |
172 | 173 | 1.909986 | GAGGGAAGGTCACCTAGCTTT | 59.090 | 52.381 | 0.00 | 0.00 | 45.83 | 3.51 |
173 | 174 | 2.306219 | GAGGGAAGGTCACCTAGCTTTT | 59.694 | 50.000 | 0.00 | 0.00 | 45.83 | 2.27 |
174 | 175 | 2.306219 | AGGGAAGGTCACCTAGCTTTTC | 59.694 | 50.000 | 0.00 | 0.00 | 45.83 | 2.29 |
175 | 176 | 2.306219 | GGGAAGGTCACCTAGCTTTTCT | 59.694 | 50.000 | 0.00 | 0.00 | 45.83 | 2.52 |
176 | 177 | 3.244946 | GGGAAGGTCACCTAGCTTTTCTT | 60.245 | 47.826 | 0.00 | 0.00 | 45.83 | 2.52 |
177 | 178 | 4.399219 | GGAAGGTCACCTAGCTTTTCTTT | 58.601 | 43.478 | 0.00 | 0.00 | 45.83 | 2.52 |
178 | 179 | 4.827835 | GGAAGGTCACCTAGCTTTTCTTTT | 59.172 | 41.667 | 0.00 | 0.00 | 45.83 | 2.27 |
179 | 180 | 6.002082 | GGAAGGTCACCTAGCTTTTCTTTTA | 58.998 | 40.000 | 0.00 | 0.00 | 45.83 | 1.52 |
180 | 181 | 6.659668 | GGAAGGTCACCTAGCTTTTCTTTTAT | 59.340 | 38.462 | 0.00 | 0.00 | 45.83 | 1.40 |
181 | 182 | 7.176865 | GGAAGGTCACCTAGCTTTTCTTTTATT | 59.823 | 37.037 | 0.00 | 0.00 | 45.83 | 1.40 |
182 | 183 | 8.478775 | AAGGTCACCTAGCTTTTCTTTTATTT | 57.521 | 30.769 | 0.00 | 0.00 | 43.37 | 1.40 |
183 | 184 | 8.478775 | AGGTCACCTAGCTTTTCTTTTATTTT | 57.521 | 30.769 | 0.00 | 0.00 | 29.36 | 1.82 |
184 | 185 | 8.924303 | AGGTCACCTAGCTTTTCTTTTATTTTT | 58.076 | 29.630 | 0.00 | 0.00 | 29.36 | 1.94 |
205 | 206 | 6.867662 | TTTTGATTGAGAACAGAGAAGGTC | 57.132 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
206 | 207 | 5.551305 | TTGATTGAGAACAGAGAAGGTCA | 57.449 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
207 | 208 | 4.887748 | TGATTGAGAACAGAGAAGGTCAC | 58.112 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
208 | 209 | 3.753294 | TTGAGAACAGAGAAGGTCACC | 57.247 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
209 | 210 | 1.613925 | TGAGAACAGAGAAGGTCACCG | 59.386 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
210 | 211 | 1.887198 | GAGAACAGAGAAGGTCACCGA | 59.113 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
211 | 212 | 2.296471 | GAGAACAGAGAAGGTCACCGAA | 59.704 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
212 | 213 | 2.036089 | AGAACAGAGAAGGTCACCGAAC | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
213 | 214 | 0.680061 | ACAGAGAAGGTCACCGAACC | 59.320 | 55.000 | 0.00 | 0.00 | 39.80 | 3.62 |
214 | 215 | 0.679505 | CAGAGAAGGTCACCGAACCA | 59.320 | 55.000 | 0.00 | 0.00 | 42.12 | 3.67 |
215 | 216 | 0.969894 | AGAGAAGGTCACCGAACCAG | 59.030 | 55.000 | 0.00 | 0.00 | 42.12 | 4.00 |
216 | 217 | 0.670854 | GAGAAGGTCACCGAACCAGC | 60.671 | 60.000 | 0.00 | 0.00 | 42.12 | 4.85 |
217 | 218 | 1.671379 | GAAGGTCACCGAACCAGCC | 60.671 | 63.158 | 0.00 | 0.00 | 42.12 | 4.85 |
218 | 219 | 3.530910 | AAGGTCACCGAACCAGCCG | 62.531 | 63.158 | 0.00 | 0.00 | 42.12 | 5.52 |
225 | 226 | 4.796231 | CGAACCAGCCGGACCTCG | 62.796 | 72.222 | 5.05 | 1.00 | 35.59 | 4.63 |
251 | 252 | 1.915141 | AAGTTGTGGGCTGAATCCTG | 58.085 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
283 | 284 | 4.675029 | CAACCGAGGGCCGACGTT | 62.675 | 66.667 | 20.39 | 11.25 | 41.76 | 3.99 |
285 | 286 | 3.286915 | AACCGAGGGCCGACGTTAC | 62.287 | 63.158 | 20.39 | 0.00 | 41.76 | 2.50 |
291 | 292 | 2.269883 | GGCCGACGTTACCCCAAT | 59.730 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
292 | 293 | 1.521616 | GGCCGACGTTACCCCAATA | 59.478 | 57.895 | 0.00 | 0.00 | 0.00 | 1.90 |
293 | 294 | 0.811219 | GGCCGACGTTACCCCAATAC | 60.811 | 60.000 | 0.00 | 0.00 | 0.00 | 1.89 |
295 | 296 | 0.528249 | CCGACGTTACCCCAATACCG | 60.528 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
296 | 297 | 0.455410 | CGACGTTACCCCAATACCGA | 59.545 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
297 | 298 | 1.135141 | CGACGTTACCCCAATACCGAA | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
298 | 299 | 2.270923 | GACGTTACCCCAATACCGAAC | 58.729 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
299 | 300 | 1.622811 | ACGTTACCCCAATACCGAACA | 59.377 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
301 | 302 | 2.011947 | GTTACCCCAATACCGAACAGC | 58.988 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
302 | 303 | 0.542805 | TACCCCAATACCGAACAGCC | 59.457 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
303 | 304 | 1.817941 | CCCCAATACCGAACAGCCG | 60.818 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
321 | 322 | 4.025401 | GGCCGTCGTGGTTTGCTG | 62.025 | 66.667 | 0.00 | 0.00 | 41.21 | 4.41 |
322 | 323 | 4.025401 | GCCGTCGTGGTTTGCTGG | 62.025 | 66.667 | 0.00 | 0.00 | 41.21 | 4.85 |
325 | 326 | 1.440938 | CCGTCGTGGTTTGCTGGAAA | 61.441 | 55.000 | 0.00 | 0.00 | 0.00 | 3.13 |
346 | 347 | 4.382320 | GTACTGCGGCCGTTGGGA | 62.382 | 66.667 | 28.70 | 11.10 | 34.06 | 4.37 |
348 | 349 | 3.887335 | TACTGCGGCCGTTGGGAAC | 62.887 | 63.158 | 28.70 | 8.52 | 34.06 | 3.62 |
361 | 362 | 0.325602 | TGGGAACTTTTATCCGCGGT | 59.674 | 50.000 | 27.15 | 15.22 | 37.87 | 5.68 |
364 | 367 | 1.395954 | GGAACTTTTATCCGCGGTGTC | 59.604 | 52.381 | 27.15 | 11.17 | 0.00 | 3.67 |
399 | 402 | 4.678840 | GCAACTTTTGTCATCCATCCATCC | 60.679 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
400 | 403 | 4.320546 | ACTTTTGTCATCCATCCATCCA | 57.679 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
401 | 404 | 4.875389 | ACTTTTGTCATCCATCCATCCAT | 58.125 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
402 | 405 | 4.891756 | ACTTTTGTCATCCATCCATCCATC | 59.108 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
403 | 406 | 3.513909 | TTGTCATCCATCCATCCATCC | 57.486 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
404 | 407 | 2.420705 | TGTCATCCATCCATCCATCCA | 58.579 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
405 | 408 | 2.990998 | TGTCATCCATCCATCCATCCAT | 59.009 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
406 | 409 | 3.245122 | TGTCATCCATCCATCCATCCATG | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
502 | 505 | 1.886542 | GCCGAAATTCCCATATGGACC | 59.113 | 52.381 | 24.00 | 4.44 | 45.11 | 4.46 |
510 | 516 | 3.138123 | TCCCATATGGACCACTACCAA | 57.862 | 47.619 | 24.00 | 0.00 | 38.61 | 3.67 |
513 | 519 | 2.483876 | CATATGGACCACTACCAAGCG | 58.516 | 52.381 | 0.00 | 0.00 | 40.93 | 4.68 |
554 | 560 | 0.328258 | GAAGCCAAGGTAAGCTCCCA | 59.672 | 55.000 | 5.28 | 0.00 | 38.74 | 4.37 |
560 | 566 | 1.900545 | AAGGTAAGCTCCCAGGACGC | 61.901 | 60.000 | 5.28 | 0.00 | 0.00 | 5.19 |
622 | 628 | 0.032130 | TGACTCTTCCACACGCAGTC | 59.968 | 55.000 | 0.00 | 0.00 | 41.61 | 3.51 |
658 | 664 | 1.790387 | GTTGCTTCGCTTGCGATCT | 59.210 | 52.632 | 18.40 | 0.00 | 0.00 | 2.75 |
662 | 668 | 1.226688 | CTTCGCTTGCGATCTCGGA | 60.227 | 57.895 | 18.40 | 1.74 | 40.23 | 4.55 |
692 | 698 | 1.877443 | CCCGAAACAACGAGGAAACAT | 59.123 | 47.619 | 0.00 | 0.00 | 35.09 | 2.71 |
705 | 711 | 2.515996 | GAAACATGACCGCGGGGAGA | 62.516 | 60.000 | 31.76 | 10.30 | 36.97 | 3.71 |
706 | 712 | 2.119484 | AAACATGACCGCGGGGAGAA | 62.119 | 55.000 | 31.76 | 10.14 | 36.97 | 2.87 |
794 | 803 | 0.250513 | GACTTCTTCGTGCCTCCCAT | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
810 | 819 | 2.046314 | ATTACCCAGCTGCGCGTT | 60.046 | 55.556 | 8.66 | 0.00 | 0.00 | 4.84 |
811 | 820 | 2.106683 | ATTACCCAGCTGCGCGTTC | 61.107 | 57.895 | 8.66 | 0.00 | 0.00 | 3.95 |
813 | 822 | 2.796483 | TTACCCAGCTGCGCGTTCAT | 62.796 | 55.000 | 8.66 | 0.00 | 0.00 | 2.57 |
842 | 851 | 0.897621 | AGACATGTCAGTCGCCATCA | 59.102 | 50.000 | 27.02 | 0.00 | 43.24 | 3.07 |
849 | 858 | 0.538584 | TCAGTCGCCATCAGCAGAAT | 59.461 | 50.000 | 0.00 | 0.00 | 44.04 | 2.40 |
850 | 859 | 1.756538 | TCAGTCGCCATCAGCAGAATA | 59.243 | 47.619 | 0.00 | 0.00 | 44.04 | 1.75 |
853 | 862 | 2.169352 | AGTCGCCATCAGCAGAATAGTT | 59.831 | 45.455 | 0.00 | 0.00 | 44.04 | 2.24 |
963 | 972 | 4.685513 | ATAAGCTTTACCTTTTCCCCCA | 57.314 | 40.909 | 3.20 | 0.00 | 0.00 | 4.96 |
989 | 998 | 1.143813 | CATCTTCCATGCCTACCCCT | 58.856 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1075 | 1084 | 4.496336 | AGCCCCTCTGCGAATGCC | 62.496 | 66.667 | 0.00 | 0.00 | 41.78 | 4.40 |
1147 | 1156 | 3.490348 | CTTCACCTCAAATCCAACTGGT | 58.510 | 45.455 | 0.00 | 0.00 | 36.34 | 4.00 |
1272 | 1281 | 2.031163 | GTCTGGCTGAGGCGTGTT | 59.969 | 61.111 | 0.35 | 0.00 | 39.81 | 3.32 |
1317 | 1326 | 2.089980 | GACGAGGACTACAGCCAGTTA | 58.910 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
1825 | 2238 | 4.735599 | GGGTCCGGGGAAGGGTCT | 62.736 | 72.222 | 0.00 | 0.00 | 0.00 | 3.85 |
1904 | 2317 | 2.567497 | GGACTCGAACCCGTGACCA | 61.567 | 63.158 | 0.00 | 0.00 | 41.33 | 4.02 |
1907 | 2320 | 1.068417 | CTCGAACCCGTGACCACAA | 59.932 | 57.895 | 0.85 | 0.00 | 37.05 | 3.33 |
1931 | 2360 | 3.741476 | CGCTGTGCCAAGGCTTCC | 61.741 | 66.667 | 12.96 | 1.13 | 42.51 | 3.46 |
1949 | 2378 | 7.639378 | AGGCTTCCCTTCTTATATTTGTAACA | 58.361 | 34.615 | 0.00 | 0.00 | 38.74 | 2.41 |
2004 | 2433 | 2.997986 | GAGAAAATTTGTGCAGCCATGG | 59.002 | 45.455 | 7.63 | 7.63 | 0.00 | 3.66 |
2078 | 2508 | 8.758633 | TGAAGTAGTTAAGTCTGAAGTAATGC | 57.241 | 34.615 | 0.00 | 0.00 | 0.00 | 3.56 |
2278 | 2719 | 7.862873 | CCACAAGATCTTAAAAGGTTGTTCTTC | 59.137 | 37.037 | 7.86 | 0.00 | 0.00 | 2.87 |
2497 | 2948 | 5.233988 | TGTTCCCATTTTCCTTAATTTGCG | 58.766 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
2892 | 3343 | 1.160137 | CTAGTGCAGCAGTTGAACCC | 58.840 | 55.000 | 8.38 | 0.00 | 35.77 | 4.11 |
2953 | 3404 | 1.531602 | GCCCAAAGTTGTGGAGGCT | 60.532 | 57.895 | 0.00 | 0.00 | 41.65 | 4.58 |
3096 | 3547 | 2.158871 | TGGTCGGTTGAAGTACAGCTTT | 60.159 | 45.455 | 0.00 | 0.00 | 37.59 | 3.51 |
4311 | 4774 | 4.925646 | GGAGAACAAATGAAAATGCAGGAC | 59.074 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
4321 | 4784 | 2.154567 | AATGCAGGACCATGCTTCAT | 57.845 | 45.000 | 14.46 | 1.26 | 46.63 | 2.57 |
4335 | 4798 | 6.318144 | ACCATGCTTCATATGAACAAGAAGAG | 59.682 | 38.462 | 14.23 | 3.42 | 39.78 | 2.85 |
4528 | 4991 | 3.248602 | GCTAAGCTGCACGCATAACTATT | 59.751 | 43.478 | 1.02 | 0.00 | 42.61 | 1.73 |
4591 | 5054 | 3.806949 | AACTGCAGTGGGAAAATAGGA | 57.193 | 42.857 | 22.49 | 0.00 | 0.00 | 2.94 |
4638 | 5101 | 6.621596 | GCAAGTACTTCATTCCAATCTGACAC | 60.622 | 42.308 | 4.77 | 0.00 | 0.00 | 3.67 |
4662 | 5125 | 2.488937 | CCCCAATTTCAATGGCTTTTGC | 59.511 | 45.455 | 0.00 | 0.00 | 46.64 | 3.68 |
4905 | 5368 | 5.419542 | TCTGTCCTATCAATTGTGCAGTAC | 58.580 | 41.667 | 5.13 | 0.00 | 0.00 | 2.73 |
4914 | 5378 | 2.719531 | TTGTGCAGTACCTCCACAAA | 57.280 | 45.000 | 16.50 | 5.56 | 43.92 | 2.83 |
5335 | 5811 | 6.763610 | ACTACAACAGGCTGCTATTTCTTATC | 59.236 | 38.462 | 15.89 | 0.00 | 0.00 | 1.75 |
5361 | 5967 | 0.107643 | GGGTATCTCCTGCCTCTTGC | 59.892 | 60.000 | 0.00 | 0.00 | 41.77 | 4.01 |
5367 | 5973 | 2.756907 | TCTCCTGCCTCTTGCTAGAAT | 58.243 | 47.619 | 0.00 | 0.00 | 42.00 | 2.40 |
5374 | 5980 | 5.277857 | TGCCTCTTGCTAGAATAAGGTAC | 57.722 | 43.478 | 0.00 | 0.00 | 42.00 | 3.34 |
5378 | 5984 | 5.163405 | CCTCTTGCTAGAATAAGGTACTGCA | 60.163 | 44.000 | 0.00 | 0.00 | 40.86 | 4.41 |
5381 | 5988 | 8.018537 | TCTTGCTAGAATAAGGTACTGCATTA | 57.981 | 34.615 | 0.00 | 0.00 | 40.86 | 1.90 |
5392 | 5999 | 5.140454 | AGGTACTGCATTATCCCAATTTCC | 58.860 | 41.667 | 0.00 | 0.00 | 37.18 | 3.13 |
5399 | 6006 | 4.499696 | GCATTATCCCAATTTCCGTTCCTG | 60.500 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
5405 | 6012 | 2.154462 | CAATTTCCGTTCCTGCTCTGT | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
5409 | 6016 | 1.593196 | TCCGTTCCTGCTCTGTTTTG | 58.407 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
5412 | 6019 | 2.554032 | CCGTTCCTGCTCTGTTTTGAAT | 59.446 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
5418 | 6025 | 5.132502 | TCCTGCTCTGTTTTGAATTCAGAA | 58.867 | 37.500 | 8.41 | 7.82 | 37.68 | 3.02 |
5427 | 6034 | 7.928908 | TGTTTTGAATTCAGAAACAGCATAC | 57.071 | 32.000 | 26.97 | 12.40 | 38.09 | 2.39 |
5429 | 6036 | 8.196771 | TGTTTTGAATTCAGAAACAGCATACTT | 58.803 | 29.630 | 26.97 | 0.00 | 38.09 | 2.24 |
5499 | 6108 | 8.839310 | TTTTCCAAAAGAACATTTGTCAGAAA | 57.161 | 26.923 | 0.00 | 0.00 | 38.37 | 2.52 |
5509 | 6118 | 0.179059 | TTGTCAGAAACAGCCAGCGA | 60.179 | 50.000 | 0.00 | 0.00 | 39.58 | 4.93 |
5512 | 6121 | 1.135859 | GTCAGAAACAGCCAGCGATTG | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 2.67 |
5518 | 6127 | 1.609208 | ACAGCCAGCGATTGTCTTTT | 58.391 | 45.000 | 0.00 | 0.00 | 0.00 | 2.27 |
5524 | 6133 | 3.002791 | CCAGCGATTGTCTTTTAGCAGA | 58.997 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
5532 | 6141 | 7.122550 | CGATTGTCTTTTAGCAGAAATAGCTC | 58.877 | 38.462 | 0.00 | 0.00 | 42.32 | 4.09 |
5536 | 6145 | 5.005875 | GTCTTTTAGCAGAAATAGCTCGGTC | 59.994 | 44.000 | 0.00 | 0.00 | 42.32 | 4.79 |
5545 | 6154 | 4.649674 | AGAAATAGCTCGGTCAACTCCATA | 59.350 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
5577 | 6186 | 7.929941 | TGTATGTTCTATATGGTGTTTGCAA | 57.070 | 32.000 | 0.00 | 0.00 | 0.00 | 4.08 |
5581 | 6190 | 8.931385 | ATGTTCTATATGGTGTTTGCAAAATC | 57.069 | 30.769 | 14.67 | 9.68 | 0.00 | 2.17 |
5582 | 6191 | 7.319646 | TGTTCTATATGGTGTTTGCAAAATCC | 58.680 | 34.615 | 14.67 | 18.28 | 0.00 | 3.01 |
5583 | 6192 | 7.178274 | TGTTCTATATGGTGTTTGCAAAATCCT | 59.822 | 33.333 | 24.54 | 16.48 | 0.00 | 3.24 |
5584 | 6193 | 7.099266 | TCTATATGGTGTTTGCAAAATCCTG | 57.901 | 36.000 | 24.54 | 14.39 | 0.00 | 3.86 |
5590 | 6199 | 3.670055 | GTGTTTGCAAAATCCTGTCATCG | 59.330 | 43.478 | 14.67 | 0.00 | 0.00 | 3.84 |
5637 | 6246 | 6.575162 | AGTTTTCTCATTGTTGGTCATACC | 57.425 | 37.500 | 0.00 | 0.00 | 39.22 | 2.73 |
5639 | 6248 | 6.431234 | AGTTTTCTCATTGTTGGTCATACCTC | 59.569 | 38.462 | 0.00 | 0.00 | 39.58 | 3.85 |
5643 | 6252 | 1.803334 | TTGTTGGTCATACCTCGCAC | 58.197 | 50.000 | 0.00 | 0.00 | 39.58 | 5.34 |
5644 | 6253 | 0.682292 | TGTTGGTCATACCTCGCACA | 59.318 | 50.000 | 0.00 | 0.00 | 39.58 | 4.57 |
5680 | 6289 | 1.881602 | CTGGCAGCAAAGGAGAAGC | 59.118 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
5686 | 6295 | 1.811359 | CAGCAAAGGAGAAGCAAGGAG | 59.189 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
5706 | 6315 | 0.764890 | TACAAGTCTGCCAAGTGCCT | 59.235 | 50.000 | 0.00 | 0.00 | 40.16 | 4.75 |
5731 | 6340 | 9.959775 | CTCATTTCAAAAGTTCTATTCTACGAC | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 4.34 |
5754 | 6363 | 5.105837 | ACGTAGAACTATGTTCCCTCTCAAC | 60.106 | 44.000 | 6.80 | 0.00 | 31.69 | 3.18 |
5756 | 6365 | 4.430441 | AGAACTATGTTCCCTCTCAACCT | 58.570 | 43.478 | 6.80 | 0.00 | 0.00 | 3.50 |
5760 | 6369 | 2.398754 | TGTTCCCTCTCAACCTCTCA | 57.601 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
5783 | 6399 | 4.470602 | TGGTAGAAGCATAGCAGCTAGTA | 58.529 | 43.478 | 8.43 | 0.00 | 45.89 | 1.82 |
5785 | 6401 | 5.540337 | TGGTAGAAGCATAGCAGCTAGTATT | 59.460 | 40.000 | 8.43 | 2.09 | 45.89 | 1.89 |
5789 | 6405 | 7.489574 | AGAAGCATAGCAGCTAGTATTTTTC | 57.510 | 36.000 | 8.43 | 6.14 | 45.89 | 2.29 |
5800 | 6418 | 7.259882 | CAGCTAGTATTTTTCATGCATTTCCA | 58.740 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
5816 | 6434 | 4.533919 | TTTCCAATGTAAACTGCATGGG | 57.466 | 40.909 | 0.00 | 0.00 | 38.49 | 4.00 |
5817 | 6435 | 2.455557 | TCCAATGTAAACTGCATGGGG | 58.544 | 47.619 | 0.00 | 0.00 | 37.87 | 4.96 |
5818 | 6436 | 1.134729 | CCAATGTAAACTGCATGGGGC | 60.135 | 52.381 | 0.00 | 0.00 | 45.13 | 5.80 |
5828 | 6446 | 2.697819 | GCATGGGGCAAATCAATGC | 58.302 | 52.632 | 0.00 | 0.00 | 45.67 | 3.56 |
5837 | 6455 | 2.932498 | GCAAATCAATGCACGTTCTGA | 58.068 | 42.857 | 0.00 | 0.00 | 45.70 | 3.27 |
5838 | 6456 | 3.307674 | GCAAATCAATGCACGTTCTGAA | 58.692 | 40.909 | 0.00 | 0.00 | 45.70 | 3.02 |
5839 | 6457 | 3.735240 | GCAAATCAATGCACGTTCTGAAA | 59.265 | 39.130 | 0.00 | 0.00 | 45.70 | 2.69 |
5840 | 6458 | 4.208873 | GCAAATCAATGCACGTTCTGAAAA | 59.791 | 37.500 | 0.00 | 0.00 | 45.70 | 2.29 |
5841 | 6459 | 5.107375 | GCAAATCAATGCACGTTCTGAAAAT | 60.107 | 36.000 | 0.00 | 0.00 | 45.70 | 1.82 |
5842 | 6460 | 6.564499 | GCAAATCAATGCACGTTCTGAAAATT | 60.564 | 34.615 | 0.00 | 0.00 | 45.70 | 1.82 |
5843 | 6461 | 7.346695 | CAAATCAATGCACGTTCTGAAAATTT | 58.653 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
5844 | 6462 | 7.481275 | AATCAATGCACGTTCTGAAAATTTT | 57.519 | 28.000 | 2.28 | 2.28 | 0.00 | 1.82 |
5845 | 6463 | 6.271396 | TCAATGCACGTTCTGAAAATTTTG | 57.729 | 33.333 | 8.47 | 0.00 | 0.00 | 2.44 |
5846 | 6464 | 6.038985 | TCAATGCACGTTCTGAAAATTTTGA | 58.961 | 32.000 | 8.47 | 0.00 | 0.00 | 2.69 |
5847 | 6465 | 6.700960 | TCAATGCACGTTCTGAAAATTTTGAT | 59.299 | 30.769 | 8.47 | 0.00 | 0.00 | 2.57 |
5848 | 6466 | 7.864882 | TCAATGCACGTTCTGAAAATTTTGATA | 59.135 | 29.630 | 8.47 | 0.00 | 0.00 | 2.15 |
5849 | 6467 | 8.649841 | CAATGCACGTTCTGAAAATTTTGATAT | 58.350 | 29.630 | 8.47 | 0.00 | 0.00 | 1.63 |
5850 | 6468 | 8.761575 | ATGCACGTTCTGAAAATTTTGATATT | 57.238 | 26.923 | 8.47 | 0.00 | 0.00 | 1.28 |
5851 | 6469 | 8.226543 | TGCACGTTCTGAAAATTTTGATATTC | 57.773 | 30.769 | 8.47 | 0.00 | 0.00 | 1.75 |
5852 | 6470 | 7.328249 | TGCACGTTCTGAAAATTTTGATATTCC | 59.672 | 33.333 | 8.47 | 0.00 | 0.00 | 3.01 |
5853 | 6471 | 7.328249 | GCACGTTCTGAAAATTTTGATATTCCA | 59.672 | 33.333 | 8.47 | 0.00 | 0.00 | 3.53 |
5854 | 6472 | 9.190858 | CACGTTCTGAAAATTTTGATATTCCAA | 57.809 | 29.630 | 8.47 | 0.00 | 0.00 | 3.53 |
5855 | 6473 | 9.410556 | ACGTTCTGAAAATTTTGATATTCCAAG | 57.589 | 29.630 | 8.47 | 0.00 | 0.00 | 3.61 |
5856 | 6474 | 9.410556 | CGTTCTGAAAATTTTGATATTCCAAGT | 57.589 | 29.630 | 8.47 | 0.00 | 0.00 | 3.16 |
5871 | 6489 | 4.715534 | TCCAAGTAGGAATGACAACCAA | 57.284 | 40.909 | 5.13 | 0.00 | 45.65 | 3.67 |
5872 | 6490 | 4.394729 | TCCAAGTAGGAATGACAACCAAC | 58.605 | 43.478 | 5.13 | 0.00 | 45.65 | 3.77 |
5873 | 6491 | 3.506067 | CCAAGTAGGAATGACAACCAACC | 59.494 | 47.826 | 5.13 | 0.00 | 41.22 | 3.77 |
5874 | 6492 | 4.141287 | CAAGTAGGAATGACAACCAACCA | 58.859 | 43.478 | 5.13 | 0.00 | 0.00 | 3.67 |
5875 | 6493 | 3.751518 | AGTAGGAATGACAACCAACCAC | 58.248 | 45.455 | 5.13 | 0.00 | 0.00 | 4.16 |
5876 | 6494 | 1.995376 | AGGAATGACAACCAACCACC | 58.005 | 50.000 | 5.13 | 0.00 | 0.00 | 4.61 |
5877 | 6495 | 1.216678 | AGGAATGACAACCAACCACCA | 59.783 | 47.619 | 5.13 | 0.00 | 0.00 | 4.17 |
5878 | 6496 | 2.158325 | AGGAATGACAACCAACCACCAT | 60.158 | 45.455 | 5.13 | 0.00 | 0.00 | 3.55 |
5879 | 6497 | 3.075283 | AGGAATGACAACCAACCACCATA | 59.925 | 43.478 | 5.13 | 0.00 | 0.00 | 2.74 |
5880 | 6498 | 3.443681 | GGAATGACAACCAACCACCATAG | 59.556 | 47.826 | 0.00 | 0.00 | 0.00 | 2.23 |
5881 | 6499 | 1.904287 | TGACAACCAACCACCATAGC | 58.096 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
5882 | 6500 | 1.173913 | GACAACCAACCACCATAGCC | 58.826 | 55.000 | 0.00 | 0.00 | 0.00 | 3.93 |
5883 | 6501 | 0.777446 | ACAACCAACCACCATAGCCT | 59.223 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
5884 | 6502 | 1.146982 | ACAACCAACCACCATAGCCTT | 59.853 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
5885 | 6503 | 1.545582 | CAACCAACCACCATAGCCTTG | 59.454 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
5886 | 6504 | 0.611896 | ACCAACCACCATAGCCTTGC | 60.612 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
5887 | 6505 | 0.611618 | CCAACCACCATAGCCTTGCA | 60.612 | 55.000 | 0.00 | 0.00 | 0.00 | 4.08 |
5888 | 6506 | 0.813184 | CAACCACCATAGCCTTGCAG | 59.187 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
5889 | 6507 | 0.698238 | AACCACCATAGCCTTGCAGA | 59.302 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5890 | 6508 | 0.698238 | ACCACCATAGCCTTGCAGAA | 59.302 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5891 | 6509 | 1.340405 | ACCACCATAGCCTTGCAGAAG | 60.340 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
5892 | 6510 | 1.065199 | CCACCATAGCCTTGCAGAAGA | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
5893 | 6511 | 2.422519 | CCACCATAGCCTTGCAGAAGAT | 60.423 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
5894 | 6512 | 2.877168 | CACCATAGCCTTGCAGAAGATC | 59.123 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
5895 | 6513 | 2.507058 | ACCATAGCCTTGCAGAAGATCA | 59.493 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
5896 | 6514 | 2.877168 | CCATAGCCTTGCAGAAGATCAC | 59.123 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
5897 | 6515 | 3.538591 | CATAGCCTTGCAGAAGATCACA | 58.461 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
5898 | 6516 | 2.803030 | AGCCTTGCAGAAGATCACAT | 57.197 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
5899 | 6517 | 3.920231 | AGCCTTGCAGAAGATCACATA | 57.080 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
5900 | 6518 | 3.539604 | AGCCTTGCAGAAGATCACATAC | 58.460 | 45.455 | 0.00 | 0.00 | 0.00 | 2.39 |
5901 | 6519 | 3.199508 | AGCCTTGCAGAAGATCACATACT | 59.800 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
5902 | 6520 | 3.559242 | GCCTTGCAGAAGATCACATACTC | 59.441 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
5903 | 6521 | 3.801050 | CCTTGCAGAAGATCACATACTCG | 59.199 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
5904 | 6522 | 2.814269 | TGCAGAAGATCACATACTCGC | 58.186 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
5905 | 6523 | 2.428530 | TGCAGAAGATCACATACTCGCT | 59.571 | 45.455 | 0.00 | 0.00 | 0.00 | 4.93 |
5906 | 6524 | 2.793790 | GCAGAAGATCACATACTCGCTG | 59.206 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
5907 | 6525 | 3.489908 | GCAGAAGATCACATACTCGCTGA | 60.490 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
5908 | 6526 | 4.041049 | CAGAAGATCACATACTCGCTGAC | 58.959 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
5909 | 6527 | 3.696548 | AGAAGATCACATACTCGCTGACA | 59.303 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
5910 | 6528 | 3.706802 | AGATCACATACTCGCTGACAG | 57.293 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
5911 | 6529 | 3.282885 | AGATCACATACTCGCTGACAGA | 58.717 | 45.455 | 6.65 | 0.00 | 0.00 | 3.41 |
5912 | 6530 | 3.888323 | AGATCACATACTCGCTGACAGAT | 59.112 | 43.478 | 6.65 | 0.00 | 0.00 | 2.90 |
5913 | 6531 | 5.066593 | AGATCACATACTCGCTGACAGATA | 58.933 | 41.667 | 6.65 | 0.00 | 0.00 | 1.98 |
5914 | 6532 | 5.709631 | AGATCACATACTCGCTGACAGATAT | 59.290 | 40.000 | 6.65 | 0.00 | 0.00 | 1.63 |
5915 | 6533 | 6.881602 | AGATCACATACTCGCTGACAGATATA | 59.118 | 38.462 | 6.65 | 0.00 | 0.00 | 0.86 |
5916 | 6534 | 6.877611 | TCACATACTCGCTGACAGATATAA | 57.122 | 37.500 | 6.65 | 0.00 | 0.00 | 0.98 |
5917 | 6535 | 7.272037 | TCACATACTCGCTGACAGATATAAA | 57.728 | 36.000 | 6.65 | 0.00 | 0.00 | 1.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 2.091588 | CGATTAACCAAGGTTCGACGTG | 59.908 | 50.000 | 7.93 | 0.00 | 39.31 | 4.49 |
2 | 3 | 2.288395 | ACGATTAACCAAGGTTCGACGT | 60.288 | 45.455 | 16.22 | 16.98 | 39.31 | 4.34 |
3 | 4 | 2.091588 | CACGATTAACCAAGGTTCGACG | 59.908 | 50.000 | 16.22 | 16.48 | 39.31 | 5.12 |
4 | 5 | 3.319755 | TCACGATTAACCAAGGTTCGAC | 58.680 | 45.455 | 16.22 | 5.75 | 39.31 | 4.20 |
7 | 8 | 6.980051 | ACTATTCACGATTAACCAAGGTTC | 57.020 | 37.500 | 7.93 | 0.00 | 39.31 | 3.62 |
8 | 9 | 7.548075 | CAGTACTATTCACGATTAACCAAGGTT | 59.452 | 37.037 | 9.74 | 9.74 | 41.65 | 3.50 |
9 | 10 | 7.039882 | CAGTACTATTCACGATTAACCAAGGT | 58.960 | 38.462 | 0.00 | 0.00 | 0.00 | 3.50 |
10 | 11 | 6.479001 | CCAGTACTATTCACGATTAACCAAGG | 59.521 | 42.308 | 0.00 | 0.00 | 0.00 | 3.61 |
11 | 12 | 6.018994 | GCCAGTACTATTCACGATTAACCAAG | 60.019 | 42.308 | 0.00 | 0.00 | 0.00 | 3.61 |
12 | 13 | 5.813672 | GCCAGTACTATTCACGATTAACCAA | 59.186 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
13 | 14 | 5.128171 | AGCCAGTACTATTCACGATTAACCA | 59.872 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
14 | 15 | 5.598769 | AGCCAGTACTATTCACGATTAACC | 58.401 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
15 | 16 | 6.270815 | TGAGCCAGTACTATTCACGATTAAC | 58.729 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
16 | 17 | 6.459670 | TGAGCCAGTACTATTCACGATTAA | 57.540 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
17 | 18 | 6.650427 | ATGAGCCAGTACTATTCACGATTA | 57.350 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
18 | 19 | 5.537300 | ATGAGCCAGTACTATTCACGATT | 57.463 | 39.130 | 0.00 | 0.00 | 0.00 | 3.34 |
19 | 20 | 5.509840 | GGAATGAGCCAGTACTATTCACGAT | 60.510 | 44.000 | 14.35 | 2.93 | 31.19 | 3.73 |
20 | 21 | 4.202121 | GGAATGAGCCAGTACTATTCACGA | 60.202 | 45.833 | 14.35 | 0.00 | 31.19 | 4.35 |
21 | 22 | 4.051922 | GGAATGAGCCAGTACTATTCACG | 58.948 | 47.826 | 14.35 | 0.00 | 31.19 | 4.35 |
22 | 23 | 4.051922 | CGGAATGAGCCAGTACTATTCAC | 58.948 | 47.826 | 14.35 | 6.00 | 31.19 | 3.18 |
23 | 24 | 3.704566 | ACGGAATGAGCCAGTACTATTCA | 59.295 | 43.478 | 14.35 | 10.30 | 31.19 | 2.57 |
24 | 25 | 4.051922 | CACGGAATGAGCCAGTACTATTC | 58.948 | 47.826 | 0.00 | 0.70 | 0.00 | 1.75 |
25 | 26 | 3.741388 | GCACGGAATGAGCCAGTACTATT | 60.741 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
26 | 27 | 2.224066 | GCACGGAATGAGCCAGTACTAT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
27 | 28 | 1.136305 | GCACGGAATGAGCCAGTACTA | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 |
28 | 29 | 0.108138 | GCACGGAATGAGCCAGTACT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
29 | 30 | 1.421410 | CGCACGGAATGAGCCAGTAC | 61.421 | 60.000 | 0.00 | 0.00 | 0.00 | 2.73 |
30 | 31 | 1.153647 | CGCACGGAATGAGCCAGTA | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 2.74 |
31 | 32 | 2.434884 | CGCACGGAATGAGCCAGT | 60.435 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
47 | 48 | 2.436646 | ATCCAGTGCCTTTCCGCG | 60.437 | 61.111 | 0.00 | 0.00 | 0.00 | 6.46 |
48 | 49 | 2.409870 | CCATCCAGTGCCTTTCCGC | 61.410 | 63.158 | 0.00 | 0.00 | 0.00 | 5.54 |
49 | 50 | 2.409870 | GCCATCCAGTGCCTTTCCG | 61.410 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
50 | 51 | 1.304381 | TGCCATCCAGTGCCTTTCC | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 3.13 |
51 | 52 | 0.610232 | AGTGCCATCCAGTGCCTTTC | 60.610 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
52 | 53 | 0.610232 | GAGTGCCATCCAGTGCCTTT | 60.610 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
53 | 54 | 1.001641 | GAGTGCCATCCAGTGCCTT | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
54 | 55 | 2.226315 | TGAGTGCCATCCAGTGCCT | 61.226 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
55 | 56 | 2.042831 | GTGAGTGCCATCCAGTGCC | 61.043 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
56 | 57 | 2.393768 | CGTGAGTGCCATCCAGTGC | 61.394 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
57 | 58 | 1.742880 | CCGTGAGTGCCATCCAGTG | 60.743 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
58 | 59 | 2.665000 | CCGTGAGTGCCATCCAGT | 59.335 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
59 | 60 | 2.821366 | GCCGTGAGTGCCATCCAG | 60.821 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
60 | 61 | 4.758251 | CGCCGTGAGTGCCATCCA | 62.758 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
61 | 62 | 4.451150 | TCGCCGTGAGTGCCATCC | 62.451 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
62 | 63 | 2.887568 | CTCGCCGTGAGTGCCATC | 60.888 | 66.667 | 0.41 | 0.00 | 40.03 | 3.51 |
76 | 77 | 3.190849 | CACACCATCGCAGGCTCG | 61.191 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
77 | 78 | 3.503363 | GCACACCATCGCAGGCTC | 61.503 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
79 | 80 | 3.680620 | TAGGCACACCATCGCAGGC | 62.681 | 63.158 | 0.00 | 0.00 | 39.06 | 4.85 |
80 | 81 | 1.815421 | GTAGGCACACCATCGCAGG | 60.815 | 63.158 | 0.00 | 0.00 | 39.06 | 4.85 |
81 | 82 | 2.167219 | CGTAGGCACACCATCGCAG | 61.167 | 63.158 | 0.00 | 0.00 | 39.06 | 5.18 |
82 | 83 | 2.125713 | CGTAGGCACACCATCGCA | 60.126 | 61.111 | 0.00 | 0.00 | 39.06 | 5.10 |
83 | 84 | 2.890474 | CCGTAGGCACACCATCGC | 60.890 | 66.667 | 0.00 | 0.00 | 46.14 | 4.58 |
95 | 96 | 1.141234 | GAACGGGGAAGAGCCGTAG | 59.859 | 63.158 | 0.00 | 0.00 | 39.30 | 3.51 |
96 | 97 | 0.901580 | AAGAACGGGGAAGAGCCGTA | 60.902 | 55.000 | 0.00 | 0.00 | 39.30 | 4.02 |
97 | 98 | 2.168666 | GAAGAACGGGGAAGAGCCGT | 62.169 | 60.000 | 0.00 | 0.00 | 42.08 | 5.68 |
98 | 99 | 1.448013 | GAAGAACGGGGAAGAGCCG | 60.448 | 63.158 | 0.00 | 0.00 | 37.63 | 5.52 |
99 | 100 | 1.078356 | GGAAGAACGGGGAAGAGCC | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
100 | 101 | 1.078356 | GGGAAGAACGGGGAAGAGC | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 4.09 |
101 | 102 | 1.602771 | GGGGAAGAACGGGGAAGAG | 59.397 | 63.158 | 0.00 | 0.00 | 0.00 | 2.85 |
102 | 103 | 2.288025 | CGGGGAAGAACGGGGAAGA | 61.288 | 63.158 | 0.00 | 0.00 | 0.00 | 2.87 |
103 | 104 | 2.267961 | CGGGGAAGAACGGGGAAG | 59.732 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
104 | 105 | 4.024545 | GCGGGGAAGAACGGGGAA | 62.025 | 66.667 | 0.00 | 0.00 | 0.00 | 3.97 |
107 | 108 | 4.468689 | GAGGCGGGGAAGAACGGG | 62.469 | 72.222 | 0.00 | 0.00 | 0.00 | 5.28 |
108 | 109 | 4.468689 | GGAGGCGGGGAAGAACGG | 62.469 | 72.222 | 0.00 | 0.00 | 0.00 | 4.44 |
109 | 110 | 4.814294 | CGGAGGCGGGGAAGAACG | 62.814 | 72.222 | 0.00 | 0.00 | 0.00 | 3.95 |
110 | 111 | 4.468689 | CCGGAGGCGGGGAAGAAC | 62.469 | 72.222 | 0.00 | 0.00 | 46.14 | 3.01 |
130 | 131 | 3.379445 | GTCGCCTTCCAGACGGGA | 61.379 | 66.667 | 0.00 | 0.00 | 46.61 | 5.14 |
131 | 132 | 2.725203 | TTTGTCGCCTTCCAGACGGG | 62.725 | 60.000 | 0.00 | 0.00 | 40.05 | 5.28 |
132 | 133 | 1.291877 | CTTTGTCGCCTTCCAGACGG | 61.292 | 60.000 | 0.00 | 0.00 | 40.05 | 4.79 |
133 | 134 | 1.291877 | CCTTTGTCGCCTTCCAGACG | 61.292 | 60.000 | 0.00 | 0.00 | 40.05 | 4.18 |
134 | 135 | 0.034896 | TCCTTTGTCGCCTTCCAGAC | 59.965 | 55.000 | 0.00 | 0.00 | 37.85 | 3.51 |
135 | 136 | 0.321671 | CTCCTTTGTCGCCTTCCAGA | 59.678 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
136 | 137 | 0.674895 | CCTCCTTTGTCGCCTTCCAG | 60.675 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
137 | 138 | 1.374947 | CCTCCTTTGTCGCCTTCCA | 59.625 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
138 | 139 | 1.377333 | CCCTCCTTTGTCGCCTTCC | 60.377 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
139 | 140 | 0.036306 | TTCCCTCCTTTGTCGCCTTC | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
140 | 141 | 0.036875 | CTTCCCTCCTTTGTCGCCTT | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
141 | 142 | 1.679898 | CTTCCCTCCTTTGTCGCCT | 59.320 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
142 | 143 | 1.377333 | CCTTCCCTCCTTTGTCGCC | 60.377 | 63.158 | 0.00 | 0.00 | 0.00 | 5.54 |
143 | 144 | 0.673956 | GACCTTCCCTCCTTTGTCGC | 60.674 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
144 | 145 | 0.685097 | TGACCTTCCCTCCTTTGTCG | 59.315 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
145 | 146 | 1.271434 | GGTGACCTTCCCTCCTTTGTC | 60.271 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
146 | 147 | 0.771755 | GGTGACCTTCCCTCCTTTGT | 59.228 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
147 | 148 | 1.068121 | AGGTGACCTTCCCTCCTTTG | 58.932 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
148 | 149 | 2.552367 | CTAGGTGACCTTCCCTCCTTT | 58.448 | 52.381 | 10.53 | 0.00 | 34.61 | 3.11 |
149 | 150 | 1.902141 | GCTAGGTGACCTTCCCTCCTT | 60.902 | 57.143 | 10.53 | 0.00 | 34.61 | 3.36 |
150 | 151 | 0.325765 | GCTAGGTGACCTTCCCTCCT | 60.326 | 60.000 | 10.53 | 0.00 | 34.61 | 3.69 |
151 | 152 | 0.325765 | AGCTAGGTGACCTTCCCTCC | 60.326 | 60.000 | 10.53 | 0.00 | 34.61 | 4.30 |
152 | 153 | 1.574263 | AAGCTAGGTGACCTTCCCTC | 58.426 | 55.000 | 10.53 | 0.00 | 34.61 | 4.30 |
153 | 154 | 2.046280 | AAAGCTAGGTGACCTTCCCT | 57.954 | 50.000 | 10.53 | 0.53 | 34.61 | 4.20 |
154 | 155 | 2.306219 | AGAAAAGCTAGGTGACCTTCCC | 59.694 | 50.000 | 10.53 | 0.00 | 34.61 | 3.97 |
155 | 156 | 3.704800 | AGAAAAGCTAGGTGACCTTCC | 57.295 | 47.619 | 10.53 | 0.63 | 34.61 | 3.46 |
156 | 157 | 7.689446 | ATAAAAGAAAAGCTAGGTGACCTTC | 57.311 | 36.000 | 10.53 | 0.00 | 34.61 | 3.46 |
157 | 158 | 8.478775 | AAATAAAAGAAAAGCTAGGTGACCTT | 57.521 | 30.769 | 10.53 | 0.00 | 34.61 | 3.50 |
158 | 159 | 8.478775 | AAAATAAAAGAAAAGCTAGGTGACCT | 57.521 | 30.769 | 10.00 | 10.00 | 37.71 | 3.85 |
181 | 182 | 6.828273 | TGACCTTCTCTGTTCTCAATCAAAAA | 59.172 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
182 | 183 | 6.260936 | GTGACCTTCTCTGTTCTCAATCAAAA | 59.739 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
183 | 184 | 5.760253 | GTGACCTTCTCTGTTCTCAATCAAA | 59.240 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
184 | 185 | 5.300752 | GTGACCTTCTCTGTTCTCAATCAA | 58.699 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
185 | 186 | 4.262635 | GGTGACCTTCTCTGTTCTCAATCA | 60.263 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
186 | 187 | 4.249661 | GGTGACCTTCTCTGTTCTCAATC | 58.750 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
187 | 188 | 3.306364 | CGGTGACCTTCTCTGTTCTCAAT | 60.306 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
188 | 189 | 2.035961 | CGGTGACCTTCTCTGTTCTCAA | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
189 | 190 | 1.613925 | CGGTGACCTTCTCTGTTCTCA | 59.386 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
190 | 191 | 1.887198 | TCGGTGACCTTCTCTGTTCTC | 59.113 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
191 | 192 | 1.996798 | TCGGTGACCTTCTCTGTTCT | 58.003 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
192 | 193 | 2.405172 | GTTCGGTGACCTTCTCTGTTC | 58.595 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
193 | 194 | 1.070289 | GGTTCGGTGACCTTCTCTGTT | 59.930 | 52.381 | 0.00 | 0.00 | 36.73 | 3.16 |
194 | 195 | 0.680061 | GGTTCGGTGACCTTCTCTGT | 59.320 | 55.000 | 0.00 | 0.00 | 36.73 | 3.41 |
195 | 196 | 0.679505 | TGGTTCGGTGACCTTCTCTG | 59.320 | 55.000 | 0.00 | 0.00 | 40.47 | 3.35 |
196 | 197 | 0.969894 | CTGGTTCGGTGACCTTCTCT | 59.030 | 55.000 | 0.00 | 0.00 | 40.47 | 3.10 |
197 | 198 | 0.670854 | GCTGGTTCGGTGACCTTCTC | 60.671 | 60.000 | 0.00 | 0.00 | 40.47 | 2.87 |
198 | 199 | 1.371558 | GCTGGTTCGGTGACCTTCT | 59.628 | 57.895 | 0.00 | 0.00 | 40.47 | 2.85 |
199 | 200 | 1.671379 | GGCTGGTTCGGTGACCTTC | 60.671 | 63.158 | 0.00 | 0.00 | 40.47 | 3.46 |
200 | 201 | 2.430367 | GGCTGGTTCGGTGACCTT | 59.570 | 61.111 | 0.00 | 0.00 | 40.47 | 3.50 |
201 | 202 | 4.003788 | CGGCTGGTTCGGTGACCT | 62.004 | 66.667 | 0.00 | 0.00 | 40.47 | 3.85 |
203 | 204 | 3.998672 | TCCGGCTGGTTCGGTGAC | 61.999 | 66.667 | 12.43 | 0.00 | 46.82 | 3.67 |
204 | 205 | 3.998672 | GTCCGGCTGGTTCGGTGA | 61.999 | 66.667 | 12.43 | 0.00 | 46.82 | 4.02 |
208 | 209 | 4.796231 | CGAGGTCCGGCTGGTTCG | 62.796 | 72.222 | 12.43 | 15.32 | 36.30 | 3.95 |
225 | 226 | 1.600916 | AGCCCACAACTTTCCTCGC | 60.601 | 57.895 | 0.00 | 0.00 | 0.00 | 5.03 |
268 | 269 | 3.752339 | GTAACGTCGGCCCTCGGT | 61.752 | 66.667 | 16.58 | 13.29 | 39.77 | 4.69 |
270 | 271 | 4.503314 | GGGTAACGTCGGCCCTCG | 62.503 | 72.222 | 12.97 | 11.81 | 39.31 | 4.63 |
280 | 281 | 2.273557 | CTGTTCGGTATTGGGGTAACG | 58.726 | 52.381 | 0.00 | 0.00 | 36.15 | 3.18 |
283 | 284 | 0.542805 | GGCTGTTCGGTATTGGGGTA | 59.457 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
285 | 286 | 1.817941 | CGGCTGTTCGGTATTGGGG | 60.818 | 63.158 | 0.00 | 0.00 | 0.00 | 4.96 |
304 | 305 | 4.025401 | CAGCAAACCACGACGGCC | 62.025 | 66.667 | 0.00 | 0.00 | 39.03 | 6.13 |
306 | 307 | 1.440938 | TTTCCAGCAAACCACGACGG | 61.441 | 55.000 | 0.00 | 0.00 | 42.50 | 4.79 |
307 | 308 | 0.378962 | TTTTCCAGCAAACCACGACG | 59.621 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
308 | 309 | 2.570442 | TTTTTCCAGCAAACCACGAC | 57.430 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
325 | 326 | 1.512156 | CCAACGGCCGCAGTACTTTT | 61.512 | 55.000 | 28.58 | 6.25 | 0.00 | 2.27 |
329 | 330 | 3.887335 | TTCCCAACGGCCGCAGTAC | 62.887 | 63.158 | 28.58 | 0.00 | 0.00 | 2.73 |
333 | 334 | 4.572571 | AAGTTCCCAACGGCCGCA | 62.573 | 61.111 | 28.58 | 0.20 | 36.23 | 5.69 |
336 | 337 | 1.475280 | GGATAAAAGTTCCCAACGGCC | 59.525 | 52.381 | 0.00 | 0.00 | 36.23 | 6.13 |
346 | 347 | 1.445871 | GGACACCGCGGATAAAAGTT | 58.554 | 50.000 | 35.90 | 2.60 | 0.00 | 2.66 |
348 | 349 | 1.093496 | GGGGACACCGCGGATAAAAG | 61.093 | 60.000 | 35.90 | 15.78 | 37.78 | 2.27 |
378 | 381 | 4.676109 | TGGATGGATGGATGACAAAAGTT | 58.324 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
399 | 402 | 1.146930 | CGGAGGTGGACCATGGATG | 59.853 | 63.158 | 21.47 | 0.00 | 38.89 | 3.51 |
400 | 403 | 0.620410 | TTCGGAGGTGGACCATGGAT | 60.620 | 55.000 | 21.47 | 1.98 | 38.89 | 3.41 |
401 | 404 | 0.620410 | ATTCGGAGGTGGACCATGGA | 60.620 | 55.000 | 21.47 | 0.00 | 38.89 | 3.41 |
402 | 405 | 0.255890 | AATTCGGAGGTGGACCATGG | 59.744 | 55.000 | 11.19 | 11.19 | 38.89 | 3.66 |
403 | 406 | 2.017049 | GAAATTCGGAGGTGGACCATG | 58.983 | 52.381 | 0.00 | 0.00 | 38.89 | 3.66 |
404 | 407 | 1.916181 | AGAAATTCGGAGGTGGACCAT | 59.084 | 47.619 | 0.00 | 0.00 | 38.89 | 3.55 |
405 | 408 | 1.358152 | AGAAATTCGGAGGTGGACCA | 58.642 | 50.000 | 0.00 | 0.00 | 38.89 | 4.02 |
406 | 409 | 3.268330 | GTTAGAAATTCGGAGGTGGACC | 58.732 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
502 | 505 | 1.714794 | CTCTGGAACGCTTGGTAGTG | 58.285 | 55.000 | 0.00 | 0.00 | 37.90 | 2.74 |
513 | 519 | 4.821589 | CTCGCGGGGCTCTGGAAC | 62.822 | 72.222 | 6.13 | 0.00 | 0.00 | 3.62 |
529 | 535 | 1.003696 | GCTTACCTTGGCTTCTCCACT | 59.996 | 52.381 | 0.00 | 0.00 | 46.55 | 4.00 |
598 | 604 | 1.608025 | GCGTGTGGAAGAGTCAATCCA | 60.608 | 52.381 | 12.33 | 12.33 | 43.32 | 3.41 |
654 | 660 | 0.958822 | GGAAGAGGAGCTCCGAGATC | 59.041 | 60.000 | 26.95 | 21.30 | 42.08 | 2.75 |
658 | 664 | 2.440430 | CGGGAAGAGGAGCTCCGA | 60.440 | 66.667 | 26.95 | 0.00 | 42.94 | 4.55 |
662 | 668 | 1.056660 | TTGTTTCGGGAAGAGGAGCT | 58.943 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
692 | 698 | 2.047213 | AAAACTTCTCCCCGCGGTCA | 62.047 | 55.000 | 26.12 | 8.93 | 0.00 | 4.02 |
810 | 819 | 6.950842 | ACTGACATGTCTGGAGAAAATATGA | 58.049 | 36.000 | 29.34 | 5.35 | 33.52 | 2.15 |
811 | 820 | 6.019237 | CGACTGACATGTCTGGAGAAAATATG | 60.019 | 42.308 | 29.34 | 8.68 | 35.00 | 1.78 |
813 | 822 | 5.410924 | CGACTGACATGTCTGGAGAAAATA | 58.589 | 41.667 | 29.34 | 6.39 | 35.00 | 1.40 |
842 | 851 | 1.026718 | GGCACGGCAACTATTCTGCT | 61.027 | 55.000 | 0.00 | 0.00 | 39.82 | 4.24 |
849 | 858 | 2.740826 | GCGAAGGCACGGCAACTA | 60.741 | 61.111 | 6.29 | 0.00 | 39.62 | 2.24 |
989 | 998 | 0.106268 | TTTTCAAGTGGCAGCCAGGA | 60.106 | 50.000 | 16.83 | 10.49 | 32.34 | 3.86 |
1075 | 1084 | 2.782222 | GCATGCCTGTGCCATCCAG | 61.782 | 63.158 | 6.36 | 0.00 | 39.18 | 3.86 |
1147 | 1156 | 1.254975 | TTGGCCTTGTCGAGATCGGA | 61.255 | 55.000 | 3.32 | 0.00 | 40.29 | 4.55 |
1272 | 1281 | 2.355108 | GGCATCCAGTTGTAGCTCTTCA | 60.355 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1317 | 1326 | 2.681097 | GCCGAGGCAAGAATACTTCCTT | 60.681 | 50.000 | 9.58 | 0.00 | 41.49 | 3.36 |
1528 | 1537 | 3.450817 | TCGCCCTTCTCAAACAGATCATA | 59.549 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
1804 | 2217 | 4.426313 | CCTTCCCCGGACCCAAGC | 62.426 | 72.222 | 0.73 | 0.00 | 0.00 | 4.01 |
1825 | 2238 | 0.468226 | CTATAGACCCAAAGCGGCCA | 59.532 | 55.000 | 2.24 | 0.00 | 0.00 | 5.36 |
1879 | 2292 | 0.249398 | CGGGTTCGAGTCCTGGAAAT | 59.751 | 55.000 | 0.00 | 0.00 | 39.00 | 2.17 |
1904 | 2317 | 0.464735 | TGGCACAGCGGTAAAGTTGT | 60.465 | 50.000 | 0.00 | 0.00 | 35.97 | 3.32 |
1907 | 2320 | 0.889186 | CCTTGGCACAGCGGTAAAGT | 60.889 | 55.000 | 0.00 | 0.00 | 42.39 | 2.66 |
2004 | 2433 | 5.635417 | AACTTGCTGCCTTCTCTAAAATC | 57.365 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
2078 | 2508 | 5.437289 | TTTTGCCTGTACAAGAACATCAG | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
2324 | 2765 | 5.054390 | AGGCAACAATACCAATTTACGTG | 57.946 | 39.130 | 0.00 | 0.00 | 41.41 | 4.49 |
2497 | 2948 | 5.897377 | ATAAAGATAACAACCTGGCACAC | 57.103 | 39.130 | 0.00 | 0.00 | 0.00 | 3.82 |
2953 | 3404 | 3.814625 | TGACATTGAGTGCAAGTGGTAA | 58.185 | 40.909 | 0.00 | 0.00 | 37.45 | 2.85 |
3096 | 3547 | 1.758440 | GAGTGGGTGTGAGCCTGTCA | 61.758 | 60.000 | 0.00 | 0.00 | 36.53 | 3.58 |
3407 | 3858 | 5.819991 | TCCTTGTAGCTTCATTCCATTCTT | 58.180 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
3628 | 4079 | 4.094590 | GTGAGACAAATTCAGATGCTCCAG | 59.905 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
4311 | 4774 | 6.688637 | TCTTCTTGTTCATATGAAGCATGG | 57.311 | 37.500 | 18.47 | 13.54 | 36.72 | 3.66 |
4321 | 4784 | 5.761726 | CCATAGCATGCTCTTCTTGTTCATA | 59.238 | 40.000 | 26.57 | 1.20 | 0.00 | 2.15 |
4335 | 4798 | 4.260375 | CGTGAAGTTTCTACCATAGCATGC | 60.260 | 45.833 | 10.51 | 10.51 | 0.00 | 4.06 |
4528 | 4991 | 4.263462 | ACCACATATCTGCTTCAGTTTCCA | 60.263 | 41.667 | 0.00 | 0.00 | 32.61 | 3.53 |
4591 | 5054 | 0.842030 | TCCAGACATGCCACCTCCTT | 60.842 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4638 | 5101 | 3.421919 | AAGCCATTGAAATTGGGGTTG | 57.578 | 42.857 | 0.00 | 0.00 | 39.46 | 3.77 |
4815 | 5278 | 7.213678 | TCATATTACACGAATGCAATACCAGA | 58.786 | 34.615 | 0.00 | 0.00 | 28.77 | 3.86 |
4914 | 5378 | 8.189119 | TGAGTTAATAATGCCCTGAAACTTTT | 57.811 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
4955 | 5419 | 3.330701 | TGGCCTGTAAATCTTGAGAAGGT | 59.669 | 43.478 | 3.32 | 0.00 | 0.00 | 3.50 |
5082 | 5550 | 4.835678 | TCTTTTACTTCGGGTACAATCCC | 58.164 | 43.478 | 0.00 | 0.00 | 43.78 | 3.85 |
5093 | 5561 | 5.356882 | TGTTCAAGGCATCTTTTACTTCG | 57.643 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
5103 | 5571 | 7.559590 | ACATACTAGAAATGTTCAAGGCATC | 57.440 | 36.000 | 0.00 | 0.00 | 33.83 | 3.91 |
5335 | 5811 | 1.343069 | GCAGGAGATACCCCTACCAG | 58.657 | 60.000 | 0.00 | 0.00 | 40.05 | 4.00 |
5361 | 5967 | 7.907389 | TGGGATAATGCAGTACCTTATTCTAG | 58.093 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
5367 | 5973 | 6.775629 | GGAAATTGGGATAATGCAGTACCTTA | 59.224 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
5374 | 5980 | 4.499696 | GGAACGGAAATTGGGATAATGCAG | 60.500 | 45.833 | 0.00 | 0.00 | 0.00 | 4.41 |
5378 | 5984 | 3.636764 | GCAGGAACGGAAATTGGGATAAT | 59.363 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
5381 | 5988 | 1.005924 | AGCAGGAACGGAAATTGGGAT | 59.994 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
5392 | 5999 | 3.904136 | ATTCAAAACAGAGCAGGAACG | 57.096 | 42.857 | 0.00 | 0.00 | 0.00 | 3.95 |
5473 | 6080 | 8.839310 | TTCTGACAAATGTTCTTTTGGAAAAA | 57.161 | 26.923 | 13.10 | 0.00 | 40.20 | 1.94 |
5474 | 6081 | 8.716909 | GTTTCTGACAAATGTTCTTTTGGAAAA | 58.283 | 29.630 | 13.10 | 0.00 | 40.20 | 2.29 |
5475 | 6082 | 7.875041 | TGTTTCTGACAAATGTTCTTTTGGAAA | 59.125 | 29.630 | 13.10 | 10.51 | 40.20 | 3.13 |
5476 | 6083 | 7.382110 | TGTTTCTGACAAATGTTCTTTTGGAA | 58.618 | 30.769 | 13.10 | 6.66 | 40.20 | 3.53 |
5477 | 6084 | 6.929625 | TGTTTCTGACAAATGTTCTTTTGGA | 58.070 | 32.000 | 13.10 | 2.29 | 40.20 | 3.53 |
5478 | 6085 | 6.237915 | GCTGTTTCTGACAAATGTTCTTTTGG | 60.238 | 38.462 | 13.10 | 0.51 | 40.20 | 3.28 |
5494 | 6103 | 0.877071 | ACAATCGCTGGCTGTTTCTG | 59.123 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5499 | 6108 | 1.609208 | AAAAGACAATCGCTGGCTGT | 58.391 | 45.000 | 0.00 | 0.00 | 45.63 | 4.40 |
5509 | 6118 | 6.037610 | CCGAGCTATTTCTGCTAAAAGACAAT | 59.962 | 38.462 | 0.00 | 0.00 | 41.30 | 2.71 |
5512 | 6121 | 4.870991 | ACCGAGCTATTTCTGCTAAAAGAC | 59.129 | 41.667 | 0.00 | 0.00 | 41.30 | 3.01 |
5518 | 6127 | 3.447586 | AGTTGACCGAGCTATTTCTGCTA | 59.552 | 43.478 | 0.00 | 0.00 | 41.30 | 3.49 |
5524 | 6133 | 3.914426 | ATGGAGTTGACCGAGCTATTT | 57.086 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
5532 | 6141 | 5.601662 | ACAACATATCTATGGAGTTGACCG | 58.398 | 41.667 | 14.10 | 0.00 | 41.41 | 4.79 |
5536 | 6145 | 9.770097 | AGAACATACAACATATCTATGGAGTTG | 57.230 | 33.333 | 7.77 | 7.77 | 43.71 | 3.16 |
5565 | 6174 | 3.387374 | TGACAGGATTTTGCAAACACCAT | 59.613 | 39.130 | 25.63 | 17.45 | 0.00 | 3.55 |
5567 | 6176 | 3.451141 | TGACAGGATTTTGCAAACACC | 57.549 | 42.857 | 12.39 | 17.16 | 0.00 | 4.16 |
5568 | 6177 | 3.670055 | CGATGACAGGATTTTGCAAACAC | 59.330 | 43.478 | 12.39 | 8.71 | 0.00 | 3.32 |
5573 | 6182 | 1.004161 | TCCCGATGACAGGATTTTGCA | 59.996 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
5574 | 6183 | 1.672881 | CTCCCGATGACAGGATTTTGC | 59.327 | 52.381 | 0.00 | 0.00 | 0.00 | 3.68 |
5577 | 6186 | 3.070734 | CAGATCTCCCGATGACAGGATTT | 59.929 | 47.826 | 0.00 | 0.00 | 0.00 | 2.17 |
5581 | 6190 | 0.033228 | GCAGATCTCCCGATGACAGG | 59.967 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
5582 | 6191 | 0.749049 | TGCAGATCTCCCGATGACAG | 59.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5583 | 6192 | 1.342496 | GATGCAGATCTCCCGATGACA | 59.658 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
5584 | 6193 | 1.617850 | AGATGCAGATCTCCCGATGAC | 59.382 | 52.381 | 0.00 | 0.00 | 33.20 | 3.06 |
5590 | 6199 | 2.433604 | TGAGAACAGATGCAGATCTCCC | 59.566 | 50.000 | 8.59 | 0.00 | 36.75 | 4.30 |
5594 | 6203 | 5.261209 | ACTACTGAGAACAGATGCAGATC | 57.739 | 43.478 | 0.00 | 0.00 | 46.03 | 2.75 |
5598 | 6207 | 5.858381 | AGAAAACTACTGAGAACAGATGCA | 58.142 | 37.500 | 0.00 | 0.00 | 46.03 | 3.96 |
5637 | 6246 | 2.079158 | AGGATGAACATTGTGTGCGAG | 58.921 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
5639 | 6248 | 2.485426 | AGAAGGATGAACATTGTGTGCG | 59.515 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
5643 | 6252 | 3.119602 | CCAGCAGAAGGATGAACATTGTG | 60.120 | 47.826 | 0.00 | 0.00 | 36.79 | 3.33 |
5644 | 6253 | 3.087031 | CCAGCAGAAGGATGAACATTGT | 58.913 | 45.455 | 0.00 | 0.00 | 33.82 | 2.71 |
5680 | 6289 | 2.839486 | TGGCAGACTTGTACTCCTTG | 57.161 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
5706 | 6315 | 8.644619 | CGTCGTAGAATAGAACTTTTGAAATGA | 58.355 | 33.333 | 0.00 | 0.00 | 39.69 | 2.57 |
5731 | 6340 | 5.341617 | GTTGAGAGGGAACATAGTTCTACG | 58.658 | 45.833 | 9.46 | 0.00 | 0.00 | 3.51 |
5741 | 6350 | 2.398754 | TGAGAGGTTGAGAGGGAACA | 57.601 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5754 | 6363 | 3.323115 | TGCTATGCTTCTACCATGAGAGG | 59.677 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
5756 | 6365 | 3.244009 | GCTGCTATGCTTCTACCATGAGA | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
5760 | 6369 | 3.900601 | ACTAGCTGCTATGCTTCTACCAT | 59.099 | 43.478 | 10.23 | 0.00 | 43.74 | 3.55 |
5783 | 6399 | 9.287373 | AGTTTACATTGGAAATGCATGAAAAAT | 57.713 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
5785 | 6401 | 7.307870 | GCAGTTTACATTGGAAATGCATGAAAA | 60.308 | 33.333 | 16.99 | 0.00 | 32.79 | 2.29 |
5789 | 6405 | 4.930405 | TGCAGTTTACATTGGAAATGCATG | 59.070 | 37.500 | 19.25 | 9.08 | 37.50 | 4.06 |
5816 | 6434 | 1.987770 | CAGAACGTGCATTGATTTGCC | 59.012 | 47.619 | 0.00 | 0.00 | 42.06 | 4.52 |
5817 | 6435 | 2.932498 | TCAGAACGTGCATTGATTTGC | 58.068 | 42.857 | 0.00 | 0.00 | 43.07 | 3.68 |
5818 | 6436 | 5.886715 | TTTTCAGAACGTGCATTGATTTG | 57.113 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
5821 | 6439 | 6.700960 | TCAAAATTTTCAGAACGTGCATTGAT | 59.299 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
5822 | 6440 | 6.038985 | TCAAAATTTTCAGAACGTGCATTGA | 58.961 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5823 | 6441 | 6.271396 | TCAAAATTTTCAGAACGTGCATTG | 57.729 | 33.333 | 0.00 | 0.00 | 0.00 | 2.82 |
5825 | 6443 | 8.761575 | AATATCAAAATTTTCAGAACGTGCAT | 57.238 | 26.923 | 0.00 | 0.00 | 0.00 | 3.96 |
5826 | 6444 | 7.328249 | GGAATATCAAAATTTTCAGAACGTGCA | 59.672 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
5827 | 6445 | 7.328249 | TGGAATATCAAAATTTTCAGAACGTGC | 59.672 | 33.333 | 0.00 | 0.00 | 0.00 | 5.34 |
5828 | 6446 | 8.741101 | TGGAATATCAAAATTTTCAGAACGTG | 57.259 | 30.769 | 0.00 | 0.00 | 0.00 | 4.49 |
5829 | 6447 | 9.410556 | CTTGGAATATCAAAATTTTCAGAACGT | 57.589 | 29.630 | 0.00 | 0.00 | 0.00 | 3.99 |
5830 | 6448 | 9.410556 | ACTTGGAATATCAAAATTTTCAGAACG | 57.589 | 29.630 | 0.00 | 0.00 | 0.00 | 3.95 |
5850 | 6468 | 4.394729 | GTTGGTTGTCATTCCTACTTGGA | 58.605 | 43.478 | 0.00 | 0.00 | 44.51 | 3.53 |
5851 | 6469 | 3.506067 | GGTTGGTTGTCATTCCTACTTGG | 59.494 | 47.826 | 8.25 | 0.00 | 31.99 | 3.61 |
5852 | 6470 | 4.023193 | GTGGTTGGTTGTCATTCCTACTTG | 60.023 | 45.833 | 8.25 | 0.00 | 31.99 | 3.16 |
5853 | 6471 | 4.142038 | GTGGTTGGTTGTCATTCCTACTT | 58.858 | 43.478 | 8.25 | 0.00 | 31.99 | 2.24 |
5854 | 6472 | 3.497942 | GGTGGTTGGTTGTCATTCCTACT | 60.498 | 47.826 | 8.25 | 0.00 | 31.99 | 2.57 |
5855 | 6473 | 2.817844 | GGTGGTTGGTTGTCATTCCTAC | 59.182 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5856 | 6474 | 2.443632 | TGGTGGTTGGTTGTCATTCCTA | 59.556 | 45.455 | 0.00 | 0.00 | 0.00 | 2.94 |
5857 | 6475 | 1.216678 | TGGTGGTTGGTTGTCATTCCT | 59.783 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
5858 | 6476 | 1.698506 | TGGTGGTTGGTTGTCATTCC | 58.301 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5859 | 6477 | 3.119495 | GCTATGGTGGTTGGTTGTCATTC | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
5860 | 6478 | 2.825532 | GCTATGGTGGTTGGTTGTCATT | 59.174 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
5861 | 6479 | 2.446435 | GCTATGGTGGTTGGTTGTCAT | 58.554 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
5862 | 6480 | 1.546773 | GGCTATGGTGGTTGGTTGTCA | 60.547 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
5863 | 6481 | 1.173913 | GGCTATGGTGGTTGGTTGTC | 58.826 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5864 | 6482 | 0.777446 | AGGCTATGGTGGTTGGTTGT | 59.223 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
5865 | 6483 | 1.545582 | CAAGGCTATGGTGGTTGGTTG | 59.454 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
5866 | 6484 | 1.923356 | CAAGGCTATGGTGGTTGGTT | 58.077 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5867 | 6485 | 0.611896 | GCAAGGCTATGGTGGTTGGT | 60.612 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5868 | 6486 | 0.611618 | TGCAAGGCTATGGTGGTTGG | 60.612 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
5869 | 6487 | 0.813184 | CTGCAAGGCTATGGTGGTTG | 59.187 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
5870 | 6488 | 0.698238 | TCTGCAAGGCTATGGTGGTT | 59.302 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5871 | 6489 | 0.698238 | TTCTGCAAGGCTATGGTGGT | 59.302 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
5872 | 6490 | 1.065199 | TCTTCTGCAAGGCTATGGTGG | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
5873 | 6491 | 2.408271 | TCTTCTGCAAGGCTATGGTG | 57.592 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
5874 | 6492 | 2.507058 | TGATCTTCTGCAAGGCTATGGT | 59.493 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
5875 | 6493 | 2.877168 | GTGATCTTCTGCAAGGCTATGG | 59.123 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
5876 | 6494 | 3.538591 | TGTGATCTTCTGCAAGGCTATG | 58.461 | 45.455 | 0.00 | 0.00 | 0.00 | 2.23 |
5877 | 6495 | 3.920231 | TGTGATCTTCTGCAAGGCTAT | 57.080 | 42.857 | 0.00 | 0.00 | 0.00 | 2.97 |
5878 | 6496 | 3.920231 | ATGTGATCTTCTGCAAGGCTA | 57.080 | 42.857 | 0.00 | 0.00 | 0.00 | 3.93 |
5879 | 6497 | 2.803030 | ATGTGATCTTCTGCAAGGCT | 57.197 | 45.000 | 0.00 | 0.00 | 0.00 | 4.58 |
5880 | 6498 | 3.539604 | AGTATGTGATCTTCTGCAAGGC | 58.460 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
5881 | 6499 | 3.801050 | CGAGTATGTGATCTTCTGCAAGG | 59.199 | 47.826 | 0.00 | 0.00 | 0.00 | 3.61 |
5882 | 6500 | 3.244814 | GCGAGTATGTGATCTTCTGCAAG | 59.755 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
5883 | 6501 | 3.118992 | AGCGAGTATGTGATCTTCTGCAA | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 4.08 |
5884 | 6502 | 2.428530 | AGCGAGTATGTGATCTTCTGCA | 59.571 | 45.455 | 0.00 | 0.00 | 0.00 | 4.41 |
5885 | 6503 | 2.793790 | CAGCGAGTATGTGATCTTCTGC | 59.206 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5886 | 6504 | 4.041049 | GTCAGCGAGTATGTGATCTTCTG | 58.959 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
5887 | 6505 | 3.696548 | TGTCAGCGAGTATGTGATCTTCT | 59.303 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
5888 | 6506 | 4.033990 | TGTCAGCGAGTATGTGATCTTC | 57.966 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
5889 | 6507 | 3.696548 | TCTGTCAGCGAGTATGTGATCTT | 59.303 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
5890 | 6508 | 3.282885 | TCTGTCAGCGAGTATGTGATCT | 58.717 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
5891 | 6509 | 3.699779 | TCTGTCAGCGAGTATGTGATC | 57.300 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
5892 | 6510 | 5.973899 | ATATCTGTCAGCGAGTATGTGAT | 57.026 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
5893 | 6511 | 6.877611 | TTATATCTGTCAGCGAGTATGTGA | 57.122 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.