Multiple sequence alignment - TraesCS2D01G380500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G380500 chr2D 100.000 5918 0 0 1 5918 484857811 484863728 0.000000e+00 10929.0
1 TraesCS2D01G380500 chr2D 89.913 3004 247 27 2166 5140 484911785 484914761 0.000000e+00 3818.0
2 TraesCS2D01G380500 chr2D 91.056 2359 170 21 1936 4275 484882918 484885254 0.000000e+00 3149.0
3 TraesCS2D01G380500 chr2D 95.941 1010 38 1 4310 5319 484885256 484886262 0.000000e+00 1635.0
4 TraesCS2D01G380500 chr2D 92.308 741 39 7 1033 1770 484882206 484882931 0.000000e+00 1037.0
5 TraesCS2D01G380500 chr2D 94.764 191 9 1 1472 1662 484910924 484911113 4.480000e-76 296.0
6 TraesCS2D01G380500 chr2D 88.272 162 17 2 1936 2096 484911611 484911771 6.050000e-45 193.0
7 TraesCS2D01G380500 chr2D 91.150 113 10 0 1654 1766 484911508 484911620 2.860000e-33 154.0
8 TraesCS2D01G380500 chr2B 93.422 5458 262 53 354 5767 569522463 569527867 0.000000e+00 8000.0
9 TraesCS2D01G380500 chr2A 94.107 2766 136 13 1936 4691 628745150 628747898 0.000000e+00 4180.0
10 TraesCS2D01G380500 chr2A 92.921 1568 82 13 211 1774 628743625 628745167 0.000000e+00 2254.0
11 TraesCS2D01G380500 chr2A 82.240 625 75 22 4719 5334 628747897 628748494 1.900000e-139 507.0
12 TraesCS2D01G380500 chr2A 78.543 494 80 19 5347 5826 628748638 628749119 9.640000e-78 302.0
13 TraesCS2D01G380500 chr3D 94.737 133 2 1 1777 1904 331016717 331016585 1.010000e-47 202.0
14 TraesCS2D01G380500 chr7B 88.372 172 9 4 1777 1938 622266298 622266468 4.680000e-46 196.0
15 TraesCS2D01G380500 chr7A 92.254 142 5 2 1768 1904 83784827 83784967 4.680000e-46 196.0
16 TraesCS2D01G380500 chr3A 88.820 161 9 5 1749 1904 724319132 724318976 7.830000e-44 189.0
17 TraesCS2D01G380500 chr3A 87.500 168 14 3 1775 1937 699981784 699981619 2.820000e-43 187.0
18 TraesCS2D01G380500 chr5A 89.933 149 9 2 1761 1904 664553038 664552891 2.820000e-43 187.0
19 TraesCS2D01G380500 chr6A 86.982 169 16 2 1766 1929 559732848 559732681 1.010000e-42 185.0
20 TraesCS2D01G380500 chr7D 86.550 171 13 4 1774 1939 120323636 120323471 4.710000e-41 180.0
21 TraesCS2D01G380500 chr4A 84.733 131 20 0 1059 1189 730153062 730153192 1.340000e-26 132.0
22 TraesCS2D01G380500 chr5B 85.714 112 16 0 1078 1189 624640698 624640587 1.040000e-22 119.0
23 TraesCS2D01G380500 chr5B 78.195 133 26 3 1059 1189 623367576 623367707 1.370000e-11 82.4
24 TraesCS2D01G380500 chr5B 78.195 133 26 3 1059 1189 627010924 627011055 1.370000e-11 82.4
25 TraesCS2D01G380500 chr5B 78.195 133 26 3 1059 1189 627885857 627885988 1.370000e-11 82.4
26 TraesCS2D01G380500 chr5B 77.863 131 26 3 1059 1187 624305174 624305303 1.770000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G380500 chr2D 484857811 484863728 5917 False 10929.000000 10929 100.000000 1 5918 1 chr2D.!!$F1 5917
1 TraesCS2D01G380500 chr2D 484882206 484886262 4056 False 1940.333333 3149 93.101667 1033 5319 3 chr2D.!!$F2 4286
2 TraesCS2D01G380500 chr2D 484910924 484914761 3837 False 1115.250000 3818 91.024750 1472 5140 4 chr2D.!!$F3 3668
3 TraesCS2D01G380500 chr2B 569522463 569527867 5404 False 8000.000000 8000 93.422000 354 5767 1 chr2B.!!$F1 5413
4 TraesCS2D01G380500 chr2A 628743625 628749119 5494 False 1810.750000 4180 86.952750 211 5826 4 chr2A.!!$F1 5615


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 628 0.032130 TGACTCTTCCACACGCAGTC 59.968 55.000 0.00 0.00 41.61 3.51 F
794 803 0.250513 GACTTCTTCGTGCCTCCCAT 59.749 55.000 0.00 0.00 0.00 4.00 F
849 858 0.538584 TCAGTCGCCATCAGCAGAAT 59.461 50.000 0.00 0.00 44.04 2.40 F
989 998 1.143813 CATCTTCCATGCCTACCCCT 58.856 55.000 0.00 0.00 0.00 4.79 F
1907 2320 1.068417 CTCGAACCCGTGACCACAA 59.932 57.895 0.85 0.00 37.05 3.33 F
2892 3343 1.160137 CTAGTGCAGCAGTTGAACCC 58.840 55.000 8.38 0.00 35.77 4.11 F
2953 3404 1.531602 GCCCAAAGTTGTGGAGGCT 60.532 57.895 0.00 0.00 41.65 4.58 F
4321 4784 2.154567 AATGCAGGACCATGCTTCAT 57.845 45.000 14.46 1.26 46.63 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 2292 0.249398 CGGGTTCGAGTCCTGGAAAT 59.751 55.000 0.0 0.0 39.00 2.17 R
1904 2317 0.464735 TGGCACAGCGGTAAAGTTGT 60.465 50.000 0.0 0.0 35.97 3.32 R
1907 2320 0.889186 CCTTGGCACAGCGGTAAAGT 60.889 55.000 0.0 0.0 42.39 2.66 R
2953 3404 3.814625 TGACATTGAGTGCAAGTGGTAA 58.185 40.909 0.0 0.0 37.45 2.85 R
3096 3547 1.758440 GAGTGGGTGTGAGCCTGTCA 61.758 60.000 0.0 0.0 36.53 3.58 R
4591 5054 0.842030 TCCAGACATGCCACCTCCTT 60.842 55.000 0.0 0.0 0.00 3.36 R
4638 5101 3.421919 AAGCCATTGAAATTGGGGTTG 57.578 42.857 0.0 0.0 39.46 3.77 R
5581 6190 0.033228 GCAGATCTCCCGATGACAGG 59.967 60.000 0.0 0.0 0.00 4.00 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.727146 GCACGTCGAACCTTGGTT 58.273 55.556 4.52 4.52 0.00 3.67
18 19 2.903284 GCACGTCGAACCTTGGTTA 58.097 52.632 4.88 0.00 0.00 2.85
19 20 1.219646 GCACGTCGAACCTTGGTTAA 58.780 50.000 4.88 0.00 0.00 2.01
20 21 1.802365 GCACGTCGAACCTTGGTTAAT 59.198 47.619 4.88 0.00 0.00 1.40
21 22 2.159747 GCACGTCGAACCTTGGTTAATC 60.160 50.000 4.88 0.00 0.00 1.75
22 23 2.091588 CACGTCGAACCTTGGTTAATCG 59.908 50.000 4.88 11.64 34.98 3.34
23 24 2.288395 ACGTCGAACCTTGGTTAATCGT 60.288 45.455 16.24 16.24 35.20 3.73
24 25 2.091588 CGTCGAACCTTGGTTAATCGTG 59.908 50.000 4.88 0.32 35.20 4.35
25 26 3.319755 GTCGAACCTTGGTTAATCGTGA 58.680 45.455 4.88 0.00 35.20 4.35
26 27 3.742369 GTCGAACCTTGGTTAATCGTGAA 59.258 43.478 4.88 0.00 35.20 3.18
27 28 4.390909 GTCGAACCTTGGTTAATCGTGAAT 59.609 41.667 4.88 0.00 35.20 2.57
28 29 5.577945 GTCGAACCTTGGTTAATCGTGAATA 59.422 40.000 4.88 0.00 35.20 1.75
29 30 5.808540 TCGAACCTTGGTTAATCGTGAATAG 59.191 40.000 4.88 0.00 35.20 1.73
30 31 5.579511 CGAACCTTGGTTAATCGTGAATAGT 59.420 40.000 4.88 0.00 0.00 2.12
31 32 6.753279 CGAACCTTGGTTAATCGTGAATAGTA 59.247 38.462 4.88 0.00 0.00 1.82
32 33 7.253883 CGAACCTTGGTTAATCGTGAATAGTAC 60.254 40.741 4.88 0.00 0.00 2.73
33 34 7.179076 ACCTTGGTTAATCGTGAATAGTACT 57.821 36.000 0.00 0.00 0.00 2.73
34 35 7.039882 ACCTTGGTTAATCGTGAATAGTACTG 58.960 38.462 5.39 0.00 0.00 2.74
35 36 6.479001 CCTTGGTTAATCGTGAATAGTACTGG 59.521 42.308 5.39 0.00 0.00 4.00
36 37 5.353938 TGGTTAATCGTGAATAGTACTGGC 58.646 41.667 5.39 0.00 0.00 4.85
37 38 5.128171 TGGTTAATCGTGAATAGTACTGGCT 59.872 40.000 5.39 0.00 0.00 4.75
38 39 5.690857 GGTTAATCGTGAATAGTACTGGCTC 59.309 44.000 5.39 0.00 0.00 4.70
39 40 6.270815 GTTAATCGTGAATAGTACTGGCTCA 58.729 40.000 5.39 2.50 0.00 4.26
40 41 5.537300 AATCGTGAATAGTACTGGCTCAT 57.463 39.130 5.39 0.00 0.00 2.90
41 42 5.537300 ATCGTGAATAGTACTGGCTCATT 57.463 39.130 5.39 0.00 0.00 2.57
42 43 4.933330 TCGTGAATAGTACTGGCTCATTC 58.067 43.478 5.39 6.99 0.00 2.67
43 44 4.051922 CGTGAATAGTACTGGCTCATTCC 58.948 47.826 5.39 0.77 0.00 3.01
44 45 4.051922 GTGAATAGTACTGGCTCATTCCG 58.948 47.826 5.39 0.00 0.00 4.30
45 46 3.704566 TGAATAGTACTGGCTCATTCCGT 59.295 43.478 5.39 0.00 0.00 4.69
46 47 3.735237 ATAGTACTGGCTCATTCCGTG 57.265 47.619 5.39 0.00 0.00 4.94
47 48 0.108138 AGTACTGGCTCATTCCGTGC 60.108 55.000 0.00 0.00 0.00 5.34
48 49 1.153647 TACTGGCTCATTCCGTGCG 60.154 57.895 0.00 0.00 34.86 5.34
49 50 3.869272 CTGGCTCATTCCGTGCGC 61.869 66.667 0.00 0.00 37.82 6.09
64 65 2.436646 CGCGGAAAGGCACTGGAT 60.437 61.111 0.00 0.00 40.86 3.41
65 66 2.753966 CGCGGAAAGGCACTGGATG 61.754 63.158 0.00 0.00 40.86 3.51
66 67 2.409870 GCGGAAAGGCACTGGATGG 61.410 63.158 0.00 0.00 40.86 3.51
73 74 3.583383 GCACTGGATGGCACTCAC 58.417 61.111 0.00 0.00 0.00 3.51
74 75 2.393768 GCACTGGATGGCACTCACG 61.394 63.158 0.00 0.00 0.00 4.35
75 76 1.742880 CACTGGATGGCACTCACGG 60.743 63.158 0.00 0.00 0.00 4.94
76 77 2.821366 CTGGATGGCACTCACGGC 60.821 66.667 0.00 0.00 0.00 5.68
77 78 4.758251 TGGATGGCACTCACGGCG 62.758 66.667 4.80 4.80 0.00 6.46
78 79 4.451150 GGATGGCACTCACGGCGA 62.451 66.667 16.62 0.00 0.00 5.54
93 94 3.190849 CGAGCCTGCGATGGTGTG 61.191 66.667 0.00 0.00 0.00 3.82
94 95 3.503363 GAGCCTGCGATGGTGTGC 61.503 66.667 0.00 0.00 0.00 4.57
97 98 2.584064 CCTGCGATGGTGTGCCTA 59.416 61.111 0.00 0.00 35.27 3.93
98 99 1.815421 CCTGCGATGGTGTGCCTAC 60.815 63.158 0.00 0.00 35.27 3.18
99 100 2.125713 TGCGATGGTGTGCCTACG 60.126 61.111 0.00 0.00 37.19 3.51
100 101 2.890474 GCGATGGTGTGCCTACGG 60.890 66.667 0.00 0.00 35.73 4.02
115 116 2.663196 CGGCTCTTCCCCGTTCTT 59.337 61.111 0.00 0.00 40.84 2.52
116 117 1.448013 CGGCTCTTCCCCGTTCTTC 60.448 63.158 0.00 0.00 40.84 2.87
117 118 1.078356 GGCTCTTCCCCGTTCTTCC 60.078 63.158 0.00 0.00 0.00 3.46
118 119 1.078356 GCTCTTCCCCGTTCTTCCC 60.078 63.158 0.00 0.00 0.00 3.97
119 120 1.602771 CTCTTCCCCGTTCTTCCCC 59.397 63.158 0.00 0.00 0.00 4.81
120 121 2.240162 CTCTTCCCCGTTCTTCCCCG 62.240 65.000 0.00 0.00 0.00 5.73
121 122 3.971109 CTTCCCCGTTCTTCCCCGC 62.971 68.421 0.00 0.00 0.00 6.13
124 125 4.468689 CCCGTTCTTCCCCGCCTC 62.469 72.222 0.00 0.00 0.00 4.70
125 126 4.468689 CCGTTCTTCCCCGCCTCC 62.469 72.222 0.00 0.00 0.00 4.30
126 127 4.814294 CGTTCTTCCCCGCCTCCG 62.814 72.222 0.00 0.00 0.00 4.63
143 144 3.787001 GGCCTCCCGTCTGGAAGG 61.787 72.222 0.00 0.00 44.57 3.46
144 145 4.475135 GCCTCCCGTCTGGAAGGC 62.475 72.222 0.00 0.00 44.57 4.35
152 153 2.544726 GTCTGGAAGGCGACAAAGG 58.455 57.895 0.00 0.00 0.00 3.11
153 154 0.034896 GTCTGGAAGGCGACAAAGGA 59.965 55.000 0.00 0.00 0.00 3.36
154 155 0.321671 TCTGGAAGGCGACAAAGGAG 59.678 55.000 0.00 0.00 0.00 3.69
155 156 0.674895 CTGGAAGGCGACAAAGGAGG 60.675 60.000 0.00 0.00 0.00 4.30
156 157 1.377333 GGAAGGCGACAAAGGAGGG 60.377 63.158 0.00 0.00 0.00 4.30
157 158 1.677552 GAAGGCGACAAAGGAGGGA 59.322 57.895 0.00 0.00 0.00 4.20
158 159 0.036306 GAAGGCGACAAAGGAGGGAA 59.964 55.000 0.00 0.00 0.00 3.97
159 160 0.036875 AAGGCGACAAAGGAGGGAAG 59.963 55.000 0.00 0.00 0.00 3.46
160 161 1.377333 GGCGACAAAGGAGGGAAGG 60.377 63.158 0.00 0.00 0.00 3.46
161 162 1.375326 GCGACAAAGGAGGGAAGGT 59.625 57.895 0.00 0.00 0.00 3.50
162 163 0.673956 GCGACAAAGGAGGGAAGGTC 60.674 60.000 0.00 0.00 0.00 3.85
163 164 0.685097 CGACAAAGGAGGGAAGGTCA 59.315 55.000 0.00 0.00 0.00 4.02
164 165 1.608283 CGACAAAGGAGGGAAGGTCAC 60.608 57.143 0.00 0.00 0.00 3.67
165 166 0.771755 ACAAAGGAGGGAAGGTCACC 59.228 55.000 0.00 0.00 0.00 4.02
166 167 1.068121 CAAAGGAGGGAAGGTCACCT 58.932 55.000 0.00 0.00 40.54 4.00
167 168 2.266279 CAAAGGAGGGAAGGTCACCTA 58.734 52.381 0.00 0.00 37.18 3.08
168 169 2.237392 CAAAGGAGGGAAGGTCACCTAG 59.763 54.545 0.00 0.00 37.18 3.02
169 170 0.325765 AGGAGGGAAGGTCACCTAGC 60.326 60.000 0.00 0.00 37.18 3.42
170 171 0.325765 GGAGGGAAGGTCACCTAGCT 60.326 60.000 0.00 0.00 37.18 3.32
172 173 1.909986 GAGGGAAGGTCACCTAGCTTT 59.090 52.381 0.00 0.00 45.83 3.51
173 174 2.306219 GAGGGAAGGTCACCTAGCTTTT 59.694 50.000 0.00 0.00 45.83 2.27
174 175 2.306219 AGGGAAGGTCACCTAGCTTTTC 59.694 50.000 0.00 0.00 45.83 2.29
175 176 2.306219 GGGAAGGTCACCTAGCTTTTCT 59.694 50.000 0.00 0.00 45.83 2.52
176 177 3.244946 GGGAAGGTCACCTAGCTTTTCTT 60.245 47.826 0.00 0.00 45.83 2.52
177 178 4.399219 GGAAGGTCACCTAGCTTTTCTTT 58.601 43.478 0.00 0.00 45.83 2.52
178 179 4.827835 GGAAGGTCACCTAGCTTTTCTTTT 59.172 41.667 0.00 0.00 45.83 2.27
179 180 6.002082 GGAAGGTCACCTAGCTTTTCTTTTA 58.998 40.000 0.00 0.00 45.83 1.52
180 181 6.659668 GGAAGGTCACCTAGCTTTTCTTTTAT 59.340 38.462 0.00 0.00 45.83 1.40
181 182 7.176865 GGAAGGTCACCTAGCTTTTCTTTTATT 59.823 37.037 0.00 0.00 45.83 1.40
182 183 8.478775 AAGGTCACCTAGCTTTTCTTTTATTT 57.521 30.769 0.00 0.00 43.37 1.40
183 184 8.478775 AGGTCACCTAGCTTTTCTTTTATTTT 57.521 30.769 0.00 0.00 29.36 1.82
184 185 8.924303 AGGTCACCTAGCTTTTCTTTTATTTTT 58.076 29.630 0.00 0.00 29.36 1.94
205 206 6.867662 TTTTGATTGAGAACAGAGAAGGTC 57.132 37.500 0.00 0.00 0.00 3.85
206 207 5.551305 TTGATTGAGAACAGAGAAGGTCA 57.449 39.130 0.00 0.00 0.00 4.02
207 208 4.887748 TGATTGAGAACAGAGAAGGTCAC 58.112 43.478 0.00 0.00 0.00 3.67
208 209 3.753294 TTGAGAACAGAGAAGGTCACC 57.247 47.619 0.00 0.00 0.00 4.02
209 210 1.613925 TGAGAACAGAGAAGGTCACCG 59.386 52.381 0.00 0.00 0.00 4.94
210 211 1.887198 GAGAACAGAGAAGGTCACCGA 59.113 52.381 0.00 0.00 0.00 4.69
211 212 2.296471 GAGAACAGAGAAGGTCACCGAA 59.704 50.000 0.00 0.00 0.00 4.30
212 213 2.036089 AGAACAGAGAAGGTCACCGAAC 59.964 50.000 0.00 0.00 0.00 3.95
213 214 0.680061 ACAGAGAAGGTCACCGAACC 59.320 55.000 0.00 0.00 39.80 3.62
214 215 0.679505 CAGAGAAGGTCACCGAACCA 59.320 55.000 0.00 0.00 42.12 3.67
215 216 0.969894 AGAGAAGGTCACCGAACCAG 59.030 55.000 0.00 0.00 42.12 4.00
216 217 0.670854 GAGAAGGTCACCGAACCAGC 60.671 60.000 0.00 0.00 42.12 4.85
217 218 1.671379 GAAGGTCACCGAACCAGCC 60.671 63.158 0.00 0.00 42.12 4.85
218 219 3.530910 AAGGTCACCGAACCAGCCG 62.531 63.158 0.00 0.00 42.12 5.52
225 226 4.796231 CGAACCAGCCGGACCTCG 62.796 72.222 5.05 1.00 35.59 4.63
251 252 1.915141 AAGTTGTGGGCTGAATCCTG 58.085 50.000 0.00 0.00 0.00 3.86
283 284 4.675029 CAACCGAGGGCCGACGTT 62.675 66.667 20.39 11.25 41.76 3.99
285 286 3.286915 AACCGAGGGCCGACGTTAC 62.287 63.158 20.39 0.00 41.76 2.50
291 292 2.269883 GGCCGACGTTACCCCAAT 59.730 61.111 0.00 0.00 0.00 3.16
292 293 1.521616 GGCCGACGTTACCCCAATA 59.478 57.895 0.00 0.00 0.00 1.90
293 294 0.811219 GGCCGACGTTACCCCAATAC 60.811 60.000 0.00 0.00 0.00 1.89
295 296 0.528249 CCGACGTTACCCCAATACCG 60.528 60.000 0.00 0.00 0.00 4.02
296 297 0.455410 CGACGTTACCCCAATACCGA 59.545 55.000 0.00 0.00 0.00 4.69
297 298 1.135141 CGACGTTACCCCAATACCGAA 60.135 52.381 0.00 0.00 0.00 4.30
298 299 2.270923 GACGTTACCCCAATACCGAAC 58.729 52.381 0.00 0.00 0.00 3.95
299 300 1.622811 ACGTTACCCCAATACCGAACA 59.377 47.619 0.00 0.00 0.00 3.18
301 302 2.011947 GTTACCCCAATACCGAACAGC 58.988 52.381 0.00 0.00 0.00 4.40
302 303 0.542805 TACCCCAATACCGAACAGCC 59.457 55.000 0.00 0.00 0.00 4.85
303 304 1.817941 CCCCAATACCGAACAGCCG 60.818 63.158 0.00 0.00 0.00 5.52
321 322 4.025401 GGCCGTCGTGGTTTGCTG 62.025 66.667 0.00 0.00 41.21 4.41
322 323 4.025401 GCCGTCGTGGTTTGCTGG 62.025 66.667 0.00 0.00 41.21 4.85
325 326 1.440938 CCGTCGTGGTTTGCTGGAAA 61.441 55.000 0.00 0.00 0.00 3.13
346 347 4.382320 GTACTGCGGCCGTTGGGA 62.382 66.667 28.70 11.10 34.06 4.37
348 349 3.887335 TACTGCGGCCGTTGGGAAC 62.887 63.158 28.70 8.52 34.06 3.62
361 362 0.325602 TGGGAACTTTTATCCGCGGT 59.674 50.000 27.15 15.22 37.87 5.68
364 367 1.395954 GGAACTTTTATCCGCGGTGTC 59.604 52.381 27.15 11.17 0.00 3.67
399 402 4.678840 GCAACTTTTGTCATCCATCCATCC 60.679 45.833 0.00 0.00 0.00 3.51
400 403 4.320546 ACTTTTGTCATCCATCCATCCA 57.679 40.909 0.00 0.00 0.00 3.41
401 404 4.875389 ACTTTTGTCATCCATCCATCCAT 58.125 39.130 0.00 0.00 0.00 3.41
402 405 4.891756 ACTTTTGTCATCCATCCATCCATC 59.108 41.667 0.00 0.00 0.00 3.51
403 406 3.513909 TTGTCATCCATCCATCCATCC 57.486 47.619 0.00 0.00 0.00 3.51
404 407 2.420705 TGTCATCCATCCATCCATCCA 58.579 47.619 0.00 0.00 0.00 3.41
405 408 2.990998 TGTCATCCATCCATCCATCCAT 59.009 45.455 0.00 0.00 0.00 3.41
406 409 3.245122 TGTCATCCATCCATCCATCCATG 60.245 47.826 0.00 0.00 0.00 3.66
502 505 1.886542 GCCGAAATTCCCATATGGACC 59.113 52.381 24.00 4.44 45.11 4.46
510 516 3.138123 TCCCATATGGACCACTACCAA 57.862 47.619 24.00 0.00 38.61 3.67
513 519 2.483876 CATATGGACCACTACCAAGCG 58.516 52.381 0.00 0.00 40.93 4.68
554 560 0.328258 GAAGCCAAGGTAAGCTCCCA 59.672 55.000 5.28 0.00 38.74 4.37
560 566 1.900545 AAGGTAAGCTCCCAGGACGC 61.901 60.000 5.28 0.00 0.00 5.19
622 628 0.032130 TGACTCTTCCACACGCAGTC 59.968 55.000 0.00 0.00 41.61 3.51
658 664 1.790387 GTTGCTTCGCTTGCGATCT 59.210 52.632 18.40 0.00 0.00 2.75
662 668 1.226688 CTTCGCTTGCGATCTCGGA 60.227 57.895 18.40 1.74 40.23 4.55
692 698 1.877443 CCCGAAACAACGAGGAAACAT 59.123 47.619 0.00 0.00 35.09 2.71
705 711 2.515996 GAAACATGACCGCGGGGAGA 62.516 60.000 31.76 10.30 36.97 3.71
706 712 2.119484 AAACATGACCGCGGGGAGAA 62.119 55.000 31.76 10.14 36.97 2.87
794 803 0.250513 GACTTCTTCGTGCCTCCCAT 59.749 55.000 0.00 0.00 0.00 4.00
810 819 2.046314 ATTACCCAGCTGCGCGTT 60.046 55.556 8.66 0.00 0.00 4.84
811 820 2.106683 ATTACCCAGCTGCGCGTTC 61.107 57.895 8.66 0.00 0.00 3.95
813 822 2.796483 TTACCCAGCTGCGCGTTCAT 62.796 55.000 8.66 0.00 0.00 2.57
842 851 0.897621 AGACATGTCAGTCGCCATCA 59.102 50.000 27.02 0.00 43.24 3.07
849 858 0.538584 TCAGTCGCCATCAGCAGAAT 59.461 50.000 0.00 0.00 44.04 2.40
850 859 1.756538 TCAGTCGCCATCAGCAGAATA 59.243 47.619 0.00 0.00 44.04 1.75
853 862 2.169352 AGTCGCCATCAGCAGAATAGTT 59.831 45.455 0.00 0.00 44.04 2.24
963 972 4.685513 ATAAGCTTTACCTTTTCCCCCA 57.314 40.909 3.20 0.00 0.00 4.96
989 998 1.143813 CATCTTCCATGCCTACCCCT 58.856 55.000 0.00 0.00 0.00 4.79
1075 1084 4.496336 AGCCCCTCTGCGAATGCC 62.496 66.667 0.00 0.00 41.78 4.40
1147 1156 3.490348 CTTCACCTCAAATCCAACTGGT 58.510 45.455 0.00 0.00 36.34 4.00
1272 1281 2.031163 GTCTGGCTGAGGCGTGTT 59.969 61.111 0.35 0.00 39.81 3.32
1317 1326 2.089980 GACGAGGACTACAGCCAGTTA 58.910 52.381 0.00 0.00 0.00 2.24
1825 2238 4.735599 GGGTCCGGGGAAGGGTCT 62.736 72.222 0.00 0.00 0.00 3.85
1904 2317 2.567497 GGACTCGAACCCGTGACCA 61.567 63.158 0.00 0.00 41.33 4.02
1907 2320 1.068417 CTCGAACCCGTGACCACAA 59.932 57.895 0.85 0.00 37.05 3.33
1931 2360 3.741476 CGCTGTGCCAAGGCTTCC 61.741 66.667 12.96 1.13 42.51 3.46
1949 2378 7.639378 AGGCTTCCCTTCTTATATTTGTAACA 58.361 34.615 0.00 0.00 38.74 2.41
2004 2433 2.997986 GAGAAAATTTGTGCAGCCATGG 59.002 45.455 7.63 7.63 0.00 3.66
2078 2508 8.758633 TGAAGTAGTTAAGTCTGAAGTAATGC 57.241 34.615 0.00 0.00 0.00 3.56
2278 2719 7.862873 CCACAAGATCTTAAAAGGTTGTTCTTC 59.137 37.037 7.86 0.00 0.00 2.87
2497 2948 5.233988 TGTTCCCATTTTCCTTAATTTGCG 58.766 37.500 0.00 0.00 0.00 4.85
2892 3343 1.160137 CTAGTGCAGCAGTTGAACCC 58.840 55.000 8.38 0.00 35.77 4.11
2953 3404 1.531602 GCCCAAAGTTGTGGAGGCT 60.532 57.895 0.00 0.00 41.65 4.58
3096 3547 2.158871 TGGTCGGTTGAAGTACAGCTTT 60.159 45.455 0.00 0.00 37.59 3.51
4311 4774 4.925646 GGAGAACAAATGAAAATGCAGGAC 59.074 41.667 0.00 0.00 0.00 3.85
4321 4784 2.154567 AATGCAGGACCATGCTTCAT 57.845 45.000 14.46 1.26 46.63 2.57
4335 4798 6.318144 ACCATGCTTCATATGAACAAGAAGAG 59.682 38.462 14.23 3.42 39.78 2.85
4528 4991 3.248602 GCTAAGCTGCACGCATAACTATT 59.751 43.478 1.02 0.00 42.61 1.73
4591 5054 3.806949 AACTGCAGTGGGAAAATAGGA 57.193 42.857 22.49 0.00 0.00 2.94
4638 5101 6.621596 GCAAGTACTTCATTCCAATCTGACAC 60.622 42.308 4.77 0.00 0.00 3.67
4662 5125 2.488937 CCCCAATTTCAATGGCTTTTGC 59.511 45.455 0.00 0.00 46.64 3.68
4905 5368 5.419542 TCTGTCCTATCAATTGTGCAGTAC 58.580 41.667 5.13 0.00 0.00 2.73
4914 5378 2.719531 TTGTGCAGTACCTCCACAAA 57.280 45.000 16.50 5.56 43.92 2.83
5335 5811 6.763610 ACTACAACAGGCTGCTATTTCTTATC 59.236 38.462 15.89 0.00 0.00 1.75
5361 5967 0.107643 GGGTATCTCCTGCCTCTTGC 59.892 60.000 0.00 0.00 41.77 4.01
5367 5973 2.756907 TCTCCTGCCTCTTGCTAGAAT 58.243 47.619 0.00 0.00 42.00 2.40
5374 5980 5.277857 TGCCTCTTGCTAGAATAAGGTAC 57.722 43.478 0.00 0.00 42.00 3.34
5378 5984 5.163405 CCTCTTGCTAGAATAAGGTACTGCA 60.163 44.000 0.00 0.00 40.86 4.41
5381 5988 8.018537 TCTTGCTAGAATAAGGTACTGCATTA 57.981 34.615 0.00 0.00 40.86 1.90
5392 5999 5.140454 AGGTACTGCATTATCCCAATTTCC 58.860 41.667 0.00 0.00 37.18 3.13
5399 6006 4.499696 GCATTATCCCAATTTCCGTTCCTG 60.500 45.833 0.00 0.00 0.00 3.86
5405 6012 2.154462 CAATTTCCGTTCCTGCTCTGT 58.846 47.619 0.00 0.00 0.00 3.41
5409 6016 1.593196 TCCGTTCCTGCTCTGTTTTG 58.407 50.000 0.00 0.00 0.00 2.44
5412 6019 2.554032 CCGTTCCTGCTCTGTTTTGAAT 59.446 45.455 0.00 0.00 0.00 2.57
5418 6025 5.132502 TCCTGCTCTGTTTTGAATTCAGAA 58.867 37.500 8.41 7.82 37.68 3.02
5427 6034 7.928908 TGTTTTGAATTCAGAAACAGCATAC 57.071 32.000 26.97 12.40 38.09 2.39
5429 6036 8.196771 TGTTTTGAATTCAGAAACAGCATACTT 58.803 29.630 26.97 0.00 38.09 2.24
5499 6108 8.839310 TTTTCCAAAAGAACATTTGTCAGAAA 57.161 26.923 0.00 0.00 38.37 2.52
5509 6118 0.179059 TTGTCAGAAACAGCCAGCGA 60.179 50.000 0.00 0.00 39.58 4.93
5512 6121 1.135859 GTCAGAAACAGCCAGCGATTG 60.136 52.381 0.00 0.00 0.00 2.67
5518 6127 1.609208 ACAGCCAGCGATTGTCTTTT 58.391 45.000 0.00 0.00 0.00 2.27
5524 6133 3.002791 CCAGCGATTGTCTTTTAGCAGA 58.997 45.455 0.00 0.00 0.00 4.26
5532 6141 7.122550 CGATTGTCTTTTAGCAGAAATAGCTC 58.877 38.462 0.00 0.00 42.32 4.09
5536 6145 5.005875 GTCTTTTAGCAGAAATAGCTCGGTC 59.994 44.000 0.00 0.00 42.32 4.79
5545 6154 4.649674 AGAAATAGCTCGGTCAACTCCATA 59.350 41.667 0.00 0.00 0.00 2.74
5577 6186 7.929941 TGTATGTTCTATATGGTGTTTGCAA 57.070 32.000 0.00 0.00 0.00 4.08
5581 6190 8.931385 ATGTTCTATATGGTGTTTGCAAAATC 57.069 30.769 14.67 9.68 0.00 2.17
5582 6191 7.319646 TGTTCTATATGGTGTTTGCAAAATCC 58.680 34.615 14.67 18.28 0.00 3.01
5583 6192 7.178274 TGTTCTATATGGTGTTTGCAAAATCCT 59.822 33.333 24.54 16.48 0.00 3.24
5584 6193 7.099266 TCTATATGGTGTTTGCAAAATCCTG 57.901 36.000 24.54 14.39 0.00 3.86
5590 6199 3.670055 GTGTTTGCAAAATCCTGTCATCG 59.330 43.478 14.67 0.00 0.00 3.84
5637 6246 6.575162 AGTTTTCTCATTGTTGGTCATACC 57.425 37.500 0.00 0.00 39.22 2.73
5639 6248 6.431234 AGTTTTCTCATTGTTGGTCATACCTC 59.569 38.462 0.00 0.00 39.58 3.85
5643 6252 1.803334 TTGTTGGTCATACCTCGCAC 58.197 50.000 0.00 0.00 39.58 5.34
5644 6253 0.682292 TGTTGGTCATACCTCGCACA 59.318 50.000 0.00 0.00 39.58 4.57
5680 6289 1.881602 CTGGCAGCAAAGGAGAAGC 59.118 57.895 0.00 0.00 0.00 3.86
5686 6295 1.811359 CAGCAAAGGAGAAGCAAGGAG 59.189 52.381 0.00 0.00 0.00 3.69
5706 6315 0.764890 TACAAGTCTGCCAAGTGCCT 59.235 50.000 0.00 0.00 40.16 4.75
5731 6340 9.959775 CTCATTTCAAAAGTTCTATTCTACGAC 57.040 33.333 0.00 0.00 0.00 4.34
5754 6363 5.105837 ACGTAGAACTATGTTCCCTCTCAAC 60.106 44.000 6.80 0.00 31.69 3.18
5756 6365 4.430441 AGAACTATGTTCCCTCTCAACCT 58.570 43.478 6.80 0.00 0.00 3.50
5760 6369 2.398754 TGTTCCCTCTCAACCTCTCA 57.601 50.000 0.00 0.00 0.00 3.27
5783 6399 4.470602 TGGTAGAAGCATAGCAGCTAGTA 58.529 43.478 8.43 0.00 45.89 1.82
5785 6401 5.540337 TGGTAGAAGCATAGCAGCTAGTATT 59.460 40.000 8.43 2.09 45.89 1.89
5789 6405 7.489574 AGAAGCATAGCAGCTAGTATTTTTC 57.510 36.000 8.43 6.14 45.89 2.29
5800 6418 7.259882 CAGCTAGTATTTTTCATGCATTTCCA 58.740 34.615 0.00 0.00 0.00 3.53
5816 6434 4.533919 TTTCCAATGTAAACTGCATGGG 57.466 40.909 0.00 0.00 38.49 4.00
5817 6435 2.455557 TCCAATGTAAACTGCATGGGG 58.544 47.619 0.00 0.00 37.87 4.96
5818 6436 1.134729 CCAATGTAAACTGCATGGGGC 60.135 52.381 0.00 0.00 45.13 5.80
5828 6446 2.697819 GCATGGGGCAAATCAATGC 58.302 52.632 0.00 0.00 45.67 3.56
5837 6455 2.932498 GCAAATCAATGCACGTTCTGA 58.068 42.857 0.00 0.00 45.70 3.27
5838 6456 3.307674 GCAAATCAATGCACGTTCTGAA 58.692 40.909 0.00 0.00 45.70 3.02
5839 6457 3.735240 GCAAATCAATGCACGTTCTGAAA 59.265 39.130 0.00 0.00 45.70 2.69
5840 6458 4.208873 GCAAATCAATGCACGTTCTGAAAA 59.791 37.500 0.00 0.00 45.70 2.29
5841 6459 5.107375 GCAAATCAATGCACGTTCTGAAAAT 60.107 36.000 0.00 0.00 45.70 1.82
5842 6460 6.564499 GCAAATCAATGCACGTTCTGAAAATT 60.564 34.615 0.00 0.00 45.70 1.82
5843 6461 7.346695 CAAATCAATGCACGTTCTGAAAATTT 58.653 30.769 0.00 0.00 0.00 1.82
5844 6462 7.481275 AATCAATGCACGTTCTGAAAATTTT 57.519 28.000 2.28 2.28 0.00 1.82
5845 6463 6.271396 TCAATGCACGTTCTGAAAATTTTG 57.729 33.333 8.47 0.00 0.00 2.44
5846 6464 6.038985 TCAATGCACGTTCTGAAAATTTTGA 58.961 32.000 8.47 0.00 0.00 2.69
5847 6465 6.700960 TCAATGCACGTTCTGAAAATTTTGAT 59.299 30.769 8.47 0.00 0.00 2.57
5848 6466 7.864882 TCAATGCACGTTCTGAAAATTTTGATA 59.135 29.630 8.47 0.00 0.00 2.15
5849 6467 8.649841 CAATGCACGTTCTGAAAATTTTGATAT 58.350 29.630 8.47 0.00 0.00 1.63
5850 6468 8.761575 ATGCACGTTCTGAAAATTTTGATATT 57.238 26.923 8.47 0.00 0.00 1.28
5851 6469 8.226543 TGCACGTTCTGAAAATTTTGATATTC 57.773 30.769 8.47 0.00 0.00 1.75
5852 6470 7.328249 TGCACGTTCTGAAAATTTTGATATTCC 59.672 33.333 8.47 0.00 0.00 3.01
5853 6471 7.328249 GCACGTTCTGAAAATTTTGATATTCCA 59.672 33.333 8.47 0.00 0.00 3.53
5854 6472 9.190858 CACGTTCTGAAAATTTTGATATTCCAA 57.809 29.630 8.47 0.00 0.00 3.53
5855 6473 9.410556 ACGTTCTGAAAATTTTGATATTCCAAG 57.589 29.630 8.47 0.00 0.00 3.61
5856 6474 9.410556 CGTTCTGAAAATTTTGATATTCCAAGT 57.589 29.630 8.47 0.00 0.00 3.16
5871 6489 4.715534 TCCAAGTAGGAATGACAACCAA 57.284 40.909 5.13 0.00 45.65 3.67
5872 6490 4.394729 TCCAAGTAGGAATGACAACCAAC 58.605 43.478 5.13 0.00 45.65 3.77
5873 6491 3.506067 CCAAGTAGGAATGACAACCAACC 59.494 47.826 5.13 0.00 41.22 3.77
5874 6492 4.141287 CAAGTAGGAATGACAACCAACCA 58.859 43.478 5.13 0.00 0.00 3.67
5875 6493 3.751518 AGTAGGAATGACAACCAACCAC 58.248 45.455 5.13 0.00 0.00 4.16
5876 6494 1.995376 AGGAATGACAACCAACCACC 58.005 50.000 5.13 0.00 0.00 4.61
5877 6495 1.216678 AGGAATGACAACCAACCACCA 59.783 47.619 5.13 0.00 0.00 4.17
5878 6496 2.158325 AGGAATGACAACCAACCACCAT 60.158 45.455 5.13 0.00 0.00 3.55
5879 6497 3.075283 AGGAATGACAACCAACCACCATA 59.925 43.478 5.13 0.00 0.00 2.74
5880 6498 3.443681 GGAATGACAACCAACCACCATAG 59.556 47.826 0.00 0.00 0.00 2.23
5881 6499 1.904287 TGACAACCAACCACCATAGC 58.096 50.000 0.00 0.00 0.00 2.97
5882 6500 1.173913 GACAACCAACCACCATAGCC 58.826 55.000 0.00 0.00 0.00 3.93
5883 6501 0.777446 ACAACCAACCACCATAGCCT 59.223 50.000 0.00 0.00 0.00 4.58
5884 6502 1.146982 ACAACCAACCACCATAGCCTT 59.853 47.619 0.00 0.00 0.00 4.35
5885 6503 1.545582 CAACCAACCACCATAGCCTTG 59.454 52.381 0.00 0.00 0.00 3.61
5886 6504 0.611896 ACCAACCACCATAGCCTTGC 60.612 55.000 0.00 0.00 0.00 4.01
5887 6505 0.611618 CCAACCACCATAGCCTTGCA 60.612 55.000 0.00 0.00 0.00 4.08
5888 6506 0.813184 CAACCACCATAGCCTTGCAG 59.187 55.000 0.00 0.00 0.00 4.41
5889 6507 0.698238 AACCACCATAGCCTTGCAGA 59.302 50.000 0.00 0.00 0.00 4.26
5890 6508 0.698238 ACCACCATAGCCTTGCAGAA 59.302 50.000 0.00 0.00 0.00 3.02
5891 6509 1.340405 ACCACCATAGCCTTGCAGAAG 60.340 52.381 0.00 0.00 0.00 2.85
5892 6510 1.065199 CCACCATAGCCTTGCAGAAGA 60.065 52.381 0.00 0.00 0.00 2.87
5893 6511 2.422519 CCACCATAGCCTTGCAGAAGAT 60.423 50.000 0.00 0.00 0.00 2.40
5894 6512 2.877168 CACCATAGCCTTGCAGAAGATC 59.123 50.000 0.00 0.00 0.00 2.75
5895 6513 2.507058 ACCATAGCCTTGCAGAAGATCA 59.493 45.455 0.00 0.00 0.00 2.92
5896 6514 2.877168 CCATAGCCTTGCAGAAGATCAC 59.123 50.000 0.00 0.00 0.00 3.06
5897 6515 3.538591 CATAGCCTTGCAGAAGATCACA 58.461 45.455 0.00 0.00 0.00 3.58
5898 6516 2.803030 AGCCTTGCAGAAGATCACAT 57.197 45.000 0.00 0.00 0.00 3.21
5899 6517 3.920231 AGCCTTGCAGAAGATCACATA 57.080 42.857 0.00 0.00 0.00 2.29
5900 6518 3.539604 AGCCTTGCAGAAGATCACATAC 58.460 45.455 0.00 0.00 0.00 2.39
5901 6519 3.199508 AGCCTTGCAGAAGATCACATACT 59.800 43.478 0.00 0.00 0.00 2.12
5902 6520 3.559242 GCCTTGCAGAAGATCACATACTC 59.441 47.826 0.00 0.00 0.00 2.59
5903 6521 3.801050 CCTTGCAGAAGATCACATACTCG 59.199 47.826 0.00 0.00 0.00 4.18
5904 6522 2.814269 TGCAGAAGATCACATACTCGC 58.186 47.619 0.00 0.00 0.00 5.03
5905 6523 2.428530 TGCAGAAGATCACATACTCGCT 59.571 45.455 0.00 0.00 0.00 4.93
5906 6524 2.793790 GCAGAAGATCACATACTCGCTG 59.206 50.000 0.00 0.00 0.00 5.18
5907 6525 3.489908 GCAGAAGATCACATACTCGCTGA 60.490 47.826 0.00 0.00 0.00 4.26
5908 6526 4.041049 CAGAAGATCACATACTCGCTGAC 58.959 47.826 0.00 0.00 0.00 3.51
5909 6527 3.696548 AGAAGATCACATACTCGCTGACA 59.303 43.478 0.00 0.00 0.00 3.58
5910 6528 3.706802 AGATCACATACTCGCTGACAG 57.293 47.619 0.00 0.00 0.00 3.51
5911 6529 3.282885 AGATCACATACTCGCTGACAGA 58.717 45.455 6.65 0.00 0.00 3.41
5912 6530 3.888323 AGATCACATACTCGCTGACAGAT 59.112 43.478 6.65 0.00 0.00 2.90
5913 6531 5.066593 AGATCACATACTCGCTGACAGATA 58.933 41.667 6.65 0.00 0.00 1.98
5914 6532 5.709631 AGATCACATACTCGCTGACAGATAT 59.290 40.000 6.65 0.00 0.00 1.63
5915 6533 6.881602 AGATCACATACTCGCTGACAGATATA 59.118 38.462 6.65 0.00 0.00 0.86
5916 6534 6.877611 TCACATACTCGCTGACAGATATAA 57.122 37.500 6.65 0.00 0.00 0.98
5917 6535 7.272037 TCACATACTCGCTGACAGATATAAA 57.728 36.000 6.65 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.091588 CGATTAACCAAGGTTCGACGTG 59.908 50.000 7.93 0.00 39.31 4.49
2 3 2.288395 ACGATTAACCAAGGTTCGACGT 60.288 45.455 16.22 16.98 39.31 4.34
3 4 2.091588 CACGATTAACCAAGGTTCGACG 59.908 50.000 16.22 16.48 39.31 5.12
4 5 3.319755 TCACGATTAACCAAGGTTCGAC 58.680 45.455 16.22 5.75 39.31 4.20
7 8 6.980051 ACTATTCACGATTAACCAAGGTTC 57.020 37.500 7.93 0.00 39.31 3.62
8 9 7.548075 CAGTACTATTCACGATTAACCAAGGTT 59.452 37.037 9.74 9.74 41.65 3.50
9 10 7.039882 CAGTACTATTCACGATTAACCAAGGT 58.960 38.462 0.00 0.00 0.00 3.50
10 11 6.479001 CCAGTACTATTCACGATTAACCAAGG 59.521 42.308 0.00 0.00 0.00 3.61
11 12 6.018994 GCCAGTACTATTCACGATTAACCAAG 60.019 42.308 0.00 0.00 0.00 3.61
12 13 5.813672 GCCAGTACTATTCACGATTAACCAA 59.186 40.000 0.00 0.00 0.00 3.67
13 14 5.128171 AGCCAGTACTATTCACGATTAACCA 59.872 40.000 0.00 0.00 0.00 3.67
14 15 5.598769 AGCCAGTACTATTCACGATTAACC 58.401 41.667 0.00 0.00 0.00 2.85
15 16 6.270815 TGAGCCAGTACTATTCACGATTAAC 58.729 40.000 0.00 0.00 0.00 2.01
16 17 6.459670 TGAGCCAGTACTATTCACGATTAA 57.540 37.500 0.00 0.00 0.00 1.40
17 18 6.650427 ATGAGCCAGTACTATTCACGATTA 57.350 37.500 0.00 0.00 0.00 1.75
18 19 5.537300 ATGAGCCAGTACTATTCACGATT 57.463 39.130 0.00 0.00 0.00 3.34
19 20 5.509840 GGAATGAGCCAGTACTATTCACGAT 60.510 44.000 14.35 2.93 31.19 3.73
20 21 4.202121 GGAATGAGCCAGTACTATTCACGA 60.202 45.833 14.35 0.00 31.19 4.35
21 22 4.051922 GGAATGAGCCAGTACTATTCACG 58.948 47.826 14.35 0.00 31.19 4.35
22 23 4.051922 CGGAATGAGCCAGTACTATTCAC 58.948 47.826 14.35 6.00 31.19 3.18
23 24 3.704566 ACGGAATGAGCCAGTACTATTCA 59.295 43.478 14.35 10.30 31.19 2.57
24 25 4.051922 CACGGAATGAGCCAGTACTATTC 58.948 47.826 0.00 0.70 0.00 1.75
25 26 3.741388 GCACGGAATGAGCCAGTACTATT 60.741 47.826 0.00 0.00 0.00 1.73
26 27 2.224066 GCACGGAATGAGCCAGTACTAT 60.224 50.000 0.00 0.00 0.00 2.12
27 28 1.136305 GCACGGAATGAGCCAGTACTA 59.864 52.381 0.00 0.00 0.00 1.82
28 29 0.108138 GCACGGAATGAGCCAGTACT 60.108 55.000 0.00 0.00 0.00 2.73
29 30 1.421410 CGCACGGAATGAGCCAGTAC 61.421 60.000 0.00 0.00 0.00 2.73
30 31 1.153647 CGCACGGAATGAGCCAGTA 60.154 57.895 0.00 0.00 0.00 2.74
31 32 2.434884 CGCACGGAATGAGCCAGT 60.435 61.111 0.00 0.00 0.00 4.00
47 48 2.436646 ATCCAGTGCCTTTCCGCG 60.437 61.111 0.00 0.00 0.00 6.46
48 49 2.409870 CCATCCAGTGCCTTTCCGC 61.410 63.158 0.00 0.00 0.00 5.54
49 50 2.409870 GCCATCCAGTGCCTTTCCG 61.410 63.158 0.00 0.00 0.00 4.30
50 51 1.304381 TGCCATCCAGTGCCTTTCC 60.304 57.895 0.00 0.00 0.00 3.13
51 52 0.610232 AGTGCCATCCAGTGCCTTTC 60.610 55.000 0.00 0.00 0.00 2.62
52 53 0.610232 GAGTGCCATCCAGTGCCTTT 60.610 55.000 0.00 0.00 0.00 3.11
53 54 1.001641 GAGTGCCATCCAGTGCCTT 60.002 57.895 0.00 0.00 0.00 4.35
54 55 2.226315 TGAGTGCCATCCAGTGCCT 61.226 57.895 0.00 0.00 0.00 4.75
55 56 2.042831 GTGAGTGCCATCCAGTGCC 61.043 63.158 0.00 0.00 0.00 5.01
56 57 2.393768 CGTGAGTGCCATCCAGTGC 61.394 63.158 0.00 0.00 0.00 4.40
57 58 1.742880 CCGTGAGTGCCATCCAGTG 60.743 63.158 0.00 0.00 0.00 3.66
58 59 2.665000 CCGTGAGTGCCATCCAGT 59.335 61.111 0.00 0.00 0.00 4.00
59 60 2.821366 GCCGTGAGTGCCATCCAG 60.821 66.667 0.00 0.00 0.00 3.86
60 61 4.758251 CGCCGTGAGTGCCATCCA 62.758 66.667 0.00 0.00 0.00 3.41
61 62 4.451150 TCGCCGTGAGTGCCATCC 62.451 66.667 0.00 0.00 0.00 3.51
62 63 2.887568 CTCGCCGTGAGTGCCATC 60.888 66.667 0.41 0.00 40.03 3.51
76 77 3.190849 CACACCATCGCAGGCTCG 61.191 66.667 0.00 0.00 0.00 5.03
77 78 3.503363 GCACACCATCGCAGGCTC 61.503 66.667 0.00 0.00 0.00 4.70
79 80 3.680620 TAGGCACACCATCGCAGGC 62.681 63.158 0.00 0.00 39.06 4.85
80 81 1.815421 GTAGGCACACCATCGCAGG 60.815 63.158 0.00 0.00 39.06 4.85
81 82 2.167219 CGTAGGCACACCATCGCAG 61.167 63.158 0.00 0.00 39.06 5.18
82 83 2.125713 CGTAGGCACACCATCGCA 60.126 61.111 0.00 0.00 39.06 5.10
83 84 2.890474 CCGTAGGCACACCATCGC 60.890 66.667 0.00 0.00 46.14 4.58
95 96 1.141234 GAACGGGGAAGAGCCGTAG 59.859 63.158 0.00 0.00 39.30 3.51
96 97 0.901580 AAGAACGGGGAAGAGCCGTA 60.902 55.000 0.00 0.00 39.30 4.02
97 98 2.168666 GAAGAACGGGGAAGAGCCGT 62.169 60.000 0.00 0.00 42.08 5.68
98 99 1.448013 GAAGAACGGGGAAGAGCCG 60.448 63.158 0.00 0.00 37.63 5.52
99 100 1.078356 GGAAGAACGGGGAAGAGCC 60.078 63.158 0.00 0.00 0.00 4.70
100 101 1.078356 GGGAAGAACGGGGAAGAGC 60.078 63.158 0.00 0.00 0.00 4.09
101 102 1.602771 GGGGAAGAACGGGGAAGAG 59.397 63.158 0.00 0.00 0.00 2.85
102 103 2.288025 CGGGGAAGAACGGGGAAGA 61.288 63.158 0.00 0.00 0.00 2.87
103 104 2.267961 CGGGGAAGAACGGGGAAG 59.732 66.667 0.00 0.00 0.00 3.46
104 105 4.024545 GCGGGGAAGAACGGGGAA 62.025 66.667 0.00 0.00 0.00 3.97
107 108 4.468689 GAGGCGGGGAAGAACGGG 62.469 72.222 0.00 0.00 0.00 5.28
108 109 4.468689 GGAGGCGGGGAAGAACGG 62.469 72.222 0.00 0.00 0.00 4.44
109 110 4.814294 CGGAGGCGGGGAAGAACG 62.814 72.222 0.00 0.00 0.00 3.95
110 111 4.468689 CCGGAGGCGGGGAAGAAC 62.469 72.222 0.00 0.00 46.14 3.01
130 131 3.379445 GTCGCCTTCCAGACGGGA 61.379 66.667 0.00 0.00 46.61 5.14
131 132 2.725203 TTTGTCGCCTTCCAGACGGG 62.725 60.000 0.00 0.00 40.05 5.28
132 133 1.291877 CTTTGTCGCCTTCCAGACGG 61.292 60.000 0.00 0.00 40.05 4.79
133 134 1.291877 CCTTTGTCGCCTTCCAGACG 61.292 60.000 0.00 0.00 40.05 4.18
134 135 0.034896 TCCTTTGTCGCCTTCCAGAC 59.965 55.000 0.00 0.00 37.85 3.51
135 136 0.321671 CTCCTTTGTCGCCTTCCAGA 59.678 55.000 0.00 0.00 0.00 3.86
136 137 0.674895 CCTCCTTTGTCGCCTTCCAG 60.675 60.000 0.00 0.00 0.00 3.86
137 138 1.374947 CCTCCTTTGTCGCCTTCCA 59.625 57.895 0.00 0.00 0.00 3.53
138 139 1.377333 CCCTCCTTTGTCGCCTTCC 60.377 63.158 0.00 0.00 0.00 3.46
139 140 0.036306 TTCCCTCCTTTGTCGCCTTC 59.964 55.000 0.00 0.00 0.00 3.46
140 141 0.036875 CTTCCCTCCTTTGTCGCCTT 59.963 55.000 0.00 0.00 0.00 4.35
141 142 1.679898 CTTCCCTCCTTTGTCGCCT 59.320 57.895 0.00 0.00 0.00 5.52
142 143 1.377333 CCTTCCCTCCTTTGTCGCC 60.377 63.158 0.00 0.00 0.00 5.54
143 144 0.673956 GACCTTCCCTCCTTTGTCGC 60.674 60.000 0.00 0.00 0.00 5.19
144 145 0.685097 TGACCTTCCCTCCTTTGTCG 59.315 55.000 0.00 0.00 0.00 4.35
145 146 1.271434 GGTGACCTTCCCTCCTTTGTC 60.271 57.143 0.00 0.00 0.00 3.18
146 147 0.771755 GGTGACCTTCCCTCCTTTGT 59.228 55.000 0.00 0.00 0.00 2.83
147 148 1.068121 AGGTGACCTTCCCTCCTTTG 58.932 55.000 0.00 0.00 0.00 2.77
148 149 2.552367 CTAGGTGACCTTCCCTCCTTT 58.448 52.381 10.53 0.00 34.61 3.11
149 150 1.902141 GCTAGGTGACCTTCCCTCCTT 60.902 57.143 10.53 0.00 34.61 3.36
150 151 0.325765 GCTAGGTGACCTTCCCTCCT 60.326 60.000 10.53 0.00 34.61 3.69
151 152 0.325765 AGCTAGGTGACCTTCCCTCC 60.326 60.000 10.53 0.00 34.61 4.30
152 153 1.574263 AAGCTAGGTGACCTTCCCTC 58.426 55.000 10.53 0.00 34.61 4.30
153 154 2.046280 AAAGCTAGGTGACCTTCCCT 57.954 50.000 10.53 0.53 34.61 4.20
154 155 2.306219 AGAAAAGCTAGGTGACCTTCCC 59.694 50.000 10.53 0.00 34.61 3.97
155 156 3.704800 AGAAAAGCTAGGTGACCTTCC 57.295 47.619 10.53 0.63 34.61 3.46
156 157 7.689446 ATAAAAGAAAAGCTAGGTGACCTTC 57.311 36.000 10.53 0.00 34.61 3.46
157 158 8.478775 AAATAAAAGAAAAGCTAGGTGACCTT 57.521 30.769 10.53 0.00 34.61 3.50
158 159 8.478775 AAAATAAAAGAAAAGCTAGGTGACCT 57.521 30.769 10.00 10.00 37.71 3.85
181 182 6.828273 TGACCTTCTCTGTTCTCAATCAAAAA 59.172 34.615 0.00 0.00 0.00 1.94
182 183 6.260936 GTGACCTTCTCTGTTCTCAATCAAAA 59.739 38.462 0.00 0.00 0.00 2.44
183 184 5.760253 GTGACCTTCTCTGTTCTCAATCAAA 59.240 40.000 0.00 0.00 0.00 2.69
184 185 5.300752 GTGACCTTCTCTGTTCTCAATCAA 58.699 41.667 0.00 0.00 0.00 2.57
185 186 4.262635 GGTGACCTTCTCTGTTCTCAATCA 60.263 45.833 0.00 0.00 0.00 2.57
186 187 4.249661 GGTGACCTTCTCTGTTCTCAATC 58.750 47.826 0.00 0.00 0.00 2.67
187 188 3.306364 CGGTGACCTTCTCTGTTCTCAAT 60.306 47.826 0.00 0.00 0.00 2.57
188 189 2.035961 CGGTGACCTTCTCTGTTCTCAA 59.964 50.000 0.00 0.00 0.00 3.02
189 190 1.613925 CGGTGACCTTCTCTGTTCTCA 59.386 52.381 0.00 0.00 0.00 3.27
190 191 1.887198 TCGGTGACCTTCTCTGTTCTC 59.113 52.381 0.00 0.00 0.00 2.87
191 192 1.996798 TCGGTGACCTTCTCTGTTCT 58.003 50.000 0.00 0.00 0.00 3.01
192 193 2.405172 GTTCGGTGACCTTCTCTGTTC 58.595 52.381 0.00 0.00 0.00 3.18
193 194 1.070289 GGTTCGGTGACCTTCTCTGTT 59.930 52.381 0.00 0.00 36.73 3.16
194 195 0.680061 GGTTCGGTGACCTTCTCTGT 59.320 55.000 0.00 0.00 36.73 3.41
195 196 0.679505 TGGTTCGGTGACCTTCTCTG 59.320 55.000 0.00 0.00 40.47 3.35
196 197 0.969894 CTGGTTCGGTGACCTTCTCT 59.030 55.000 0.00 0.00 40.47 3.10
197 198 0.670854 GCTGGTTCGGTGACCTTCTC 60.671 60.000 0.00 0.00 40.47 2.87
198 199 1.371558 GCTGGTTCGGTGACCTTCT 59.628 57.895 0.00 0.00 40.47 2.85
199 200 1.671379 GGCTGGTTCGGTGACCTTC 60.671 63.158 0.00 0.00 40.47 3.46
200 201 2.430367 GGCTGGTTCGGTGACCTT 59.570 61.111 0.00 0.00 40.47 3.50
201 202 4.003788 CGGCTGGTTCGGTGACCT 62.004 66.667 0.00 0.00 40.47 3.85
203 204 3.998672 TCCGGCTGGTTCGGTGAC 61.999 66.667 12.43 0.00 46.82 3.67
204 205 3.998672 GTCCGGCTGGTTCGGTGA 61.999 66.667 12.43 0.00 46.82 4.02
208 209 4.796231 CGAGGTCCGGCTGGTTCG 62.796 72.222 12.43 15.32 36.30 3.95
225 226 1.600916 AGCCCACAACTTTCCTCGC 60.601 57.895 0.00 0.00 0.00 5.03
268 269 3.752339 GTAACGTCGGCCCTCGGT 61.752 66.667 16.58 13.29 39.77 4.69
270 271 4.503314 GGGTAACGTCGGCCCTCG 62.503 72.222 12.97 11.81 39.31 4.63
280 281 2.273557 CTGTTCGGTATTGGGGTAACG 58.726 52.381 0.00 0.00 36.15 3.18
283 284 0.542805 GGCTGTTCGGTATTGGGGTA 59.457 55.000 0.00 0.00 0.00 3.69
285 286 1.817941 CGGCTGTTCGGTATTGGGG 60.818 63.158 0.00 0.00 0.00 4.96
304 305 4.025401 CAGCAAACCACGACGGCC 62.025 66.667 0.00 0.00 39.03 6.13
306 307 1.440938 TTTCCAGCAAACCACGACGG 61.441 55.000 0.00 0.00 42.50 4.79
307 308 0.378962 TTTTCCAGCAAACCACGACG 59.621 50.000 0.00 0.00 0.00 5.12
308 309 2.570442 TTTTTCCAGCAAACCACGAC 57.430 45.000 0.00 0.00 0.00 4.34
325 326 1.512156 CCAACGGCCGCAGTACTTTT 61.512 55.000 28.58 6.25 0.00 2.27
329 330 3.887335 TTCCCAACGGCCGCAGTAC 62.887 63.158 28.58 0.00 0.00 2.73
333 334 4.572571 AAGTTCCCAACGGCCGCA 62.573 61.111 28.58 0.20 36.23 5.69
336 337 1.475280 GGATAAAAGTTCCCAACGGCC 59.525 52.381 0.00 0.00 36.23 6.13
346 347 1.445871 GGACACCGCGGATAAAAGTT 58.554 50.000 35.90 2.60 0.00 2.66
348 349 1.093496 GGGGACACCGCGGATAAAAG 61.093 60.000 35.90 15.78 37.78 2.27
378 381 4.676109 TGGATGGATGGATGACAAAAGTT 58.324 39.130 0.00 0.00 0.00 2.66
399 402 1.146930 CGGAGGTGGACCATGGATG 59.853 63.158 21.47 0.00 38.89 3.51
400 403 0.620410 TTCGGAGGTGGACCATGGAT 60.620 55.000 21.47 1.98 38.89 3.41
401 404 0.620410 ATTCGGAGGTGGACCATGGA 60.620 55.000 21.47 0.00 38.89 3.41
402 405 0.255890 AATTCGGAGGTGGACCATGG 59.744 55.000 11.19 11.19 38.89 3.66
403 406 2.017049 GAAATTCGGAGGTGGACCATG 58.983 52.381 0.00 0.00 38.89 3.66
404 407 1.916181 AGAAATTCGGAGGTGGACCAT 59.084 47.619 0.00 0.00 38.89 3.55
405 408 1.358152 AGAAATTCGGAGGTGGACCA 58.642 50.000 0.00 0.00 38.89 4.02
406 409 3.268330 GTTAGAAATTCGGAGGTGGACC 58.732 50.000 0.00 0.00 0.00 4.46
502 505 1.714794 CTCTGGAACGCTTGGTAGTG 58.285 55.000 0.00 0.00 37.90 2.74
513 519 4.821589 CTCGCGGGGCTCTGGAAC 62.822 72.222 6.13 0.00 0.00 3.62
529 535 1.003696 GCTTACCTTGGCTTCTCCACT 59.996 52.381 0.00 0.00 46.55 4.00
598 604 1.608025 GCGTGTGGAAGAGTCAATCCA 60.608 52.381 12.33 12.33 43.32 3.41
654 660 0.958822 GGAAGAGGAGCTCCGAGATC 59.041 60.000 26.95 21.30 42.08 2.75
658 664 2.440430 CGGGAAGAGGAGCTCCGA 60.440 66.667 26.95 0.00 42.94 4.55
662 668 1.056660 TTGTTTCGGGAAGAGGAGCT 58.943 50.000 0.00 0.00 0.00 4.09
692 698 2.047213 AAAACTTCTCCCCGCGGTCA 62.047 55.000 26.12 8.93 0.00 4.02
810 819 6.950842 ACTGACATGTCTGGAGAAAATATGA 58.049 36.000 29.34 5.35 33.52 2.15
811 820 6.019237 CGACTGACATGTCTGGAGAAAATATG 60.019 42.308 29.34 8.68 35.00 1.78
813 822 5.410924 CGACTGACATGTCTGGAGAAAATA 58.589 41.667 29.34 6.39 35.00 1.40
842 851 1.026718 GGCACGGCAACTATTCTGCT 61.027 55.000 0.00 0.00 39.82 4.24
849 858 2.740826 GCGAAGGCACGGCAACTA 60.741 61.111 6.29 0.00 39.62 2.24
989 998 0.106268 TTTTCAAGTGGCAGCCAGGA 60.106 50.000 16.83 10.49 32.34 3.86
1075 1084 2.782222 GCATGCCTGTGCCATCCAG 61.782 63.158 6.36 0.00 39.18 3.86
1147 1156 1.254975 TTGGCCTTGTCGAGATCGGA 61.255 55.000 3.32 0.00 40.29 4.55
1272 1281 2.355108 GGCATCCAGTTGTAGCTCTTCA 60.355 50.000 0.00 0.00 0.00 3.02
1317 1326 2.681097 GCCGAGGCAAGAATACTTCCTT 60.681 50.000 9.58 0.00 41.49 3.36
1528 1537 3.450817 TCGCCCTTCTCAAACAGATCATA 59.549 43.478 0.00 0.00 0.00 2.15
1804 2217 4.426313 CCTTCCCCGGACCCAAGC 62.426 72.222 0.73 0.00 0.00 4.01
1825 2238 0.468226 CTATAGACCCAAAGCGGCCA 59.532 55.000 2.24 0.00 0.00 5.36
1879 2292 0.249398 CGGGTTCGAGTCCTGGAAAT 59.751 55.000 0.00 0.00 39.00 2.17
1904 2317 0.464735 TGGCACAGCGGTAAAGTTGT 60.465 50.000 0.00 0.00 35.97 3.32
1907 2320 0.889186 CCTTGGCACAGCGGTAAAGT 60.889 55.000 0.00 0.00 42.39 2.66
2004 2433 5.635417 AACTTGCTGCCTTCTCTAAAATC 57.365 39.130 0.00 0.00 0.00 2.17
2078 2508 5.437289 TTTTGCCTGTACAAGAACATCAG 57.563 39.130 0.00 0.00 0.00 2.90
2324 2765 5.054390 AGGCAACAATACCAATTTACGTG 57.946 39.130 0.00 0.00 41.41 4.49
2497 2948 5.897377 ATAAAGATAACAACCTGGCACAC 57.103 39.130 0.00 0.00 0.00 3.82
2953 3404 3.814625 TGACATTGAGTGCAAGTGGTAA 58.185 40.909 0.00 0.00 37.45 2.85
3096 3547 1.758440 GAGTGGGTGTGAGCCTGTCA 61.758 60.000 0.00 0.00 36.53 3.58
3407 3858 5.819991 TCCTTGTAGCTTCATTCCATTCTT 58.180 37.500 0.00 0.00 0.00 2.52
3628 4079 4.094590 GTGAGACAAATTCAGATGCTCCAG 59.905 45.833 0.00 0.00 0.00 3.86
4311 4774 6.688637 TCTTCTTGTTCATATGAAGCATGG 57.311 37.500 18.47 13.54 36.72 3.66
4321 4784 5.761726 CCATAGCATGCTCTTCTTGTTCATA 59.238 40.000 26.57 1.20 0.00 2.15
4335 4798 4.260375 CGTGAAGTTTCTACCATAGCATGC 60.260 45.833 10.51 10.51 0.00 4.06
4528 4991 4.263462 ACCACATATCTGCTTCAGTTTCCA 60.263 41.667 0.00 0.00 32.61 3.53
4591 5054 0.842030 TCCAGACATGCCACCTCCTT 60.842 55.000 0.00 0.00 0.00 3.36
4638 5101 3.421919 AAGCCATTGAAATTGGGGTTG 57.578 42.857 0.00 0.00 39.46 3.77
4815 5278 7.213678 TCATATTACACGAATGCAATACCAGA 58.786 34.615 0.00 0.00 28.77 3.86
4914 5378 8.189119 TGAGTTAATAATGCCCTGAAACTTTT 57.811 30.769 0.00 0.00 0.00 2.27
4955 5419 3.330701 TGGCCTGTAAATCTTGAGAAGGT 59.669 43.478 3.32 0.00 0.00 3.50
5082 5550 4.835678 TCTTTTACTTCGGGTACAATCCC 58.164 43.478 0.00 0.00 43.78 3.85
5093 5561 5.356882 TGTTCAAGGCATCTTTTACTTCG 57.643 39.130 0.00 0.00 0.00 3.79
5103 5571 7.559590 ACATACTAGAAATGTTCAAGGCATC 57.440 36.000 0.00 0.00 33.83 3.91
5335 5811 1.343069 GCAGGAGATACCCCTACCAG 58.657 60.000 0.00 0.00 40.05 4.00
5361 5967 7.907389 TGGGATAATGCAGTACCTTATTCTAG 58.093 38.462 0.00 0.00 0.00 2.43
5367 5973 6.775629 GGAAATTGGGATAATGCAGTACCTTA 59.224 38.462 0.00 0.00 0.00 2.69
5374 5980 4.499696 GGAACGGAAATTGGGATAATGCAG 60.500 45.833 0.00 0.00 0.00 4.41
5378 5984 3.636764 GCAGGAACGGAAATTGGGATAAT 59.363 43.478 0.00 0.00 0.00 1.28
5381 5988 1.005924 AGCAGGAACGGAAATTGGGAT 59.994 47.619 0.00 0.00 0.00 3.85
5392 5999 3.904136 ATTCAAAACAGAGCAGGAACG 57.096 42.857 0.00 0.00 0.00 3.95
5473 6080 8.839310 TTCTGACAAATGTTCTTTTGGAAAAA 57.161 26.923 13.10 0.00 40.20 1.94
5474 6081 8.716909 GTTTCTGACAAATGTTCTTTTGGAAAA 58.283 29.630 13.10 0.00 40.20 2.29
5475 6082 7.875041 TGTTTCTGACAAATGTTCTTTTGGAAA 59.125 29.630 13.10 10.51 40.20 3.13
5476 6083 7.382110 TGTTTCTGACAAATGTTCTTTTGGAA 58.618 30.769 13.10 6.66 40.20 3.53
5477 6084 6.929625 TGTTTCTGACAAATGTTCTTTTGGA 58.070 32.000 13.10 2.29 40.20 3.53
5478 6085 6.237915 GCTGTTTCTGACAAATGTTCTTTTGG 60.238 38.462 13.10 0.51 40.20 3.28
5494 6103 0.877071 ACAATCGCTGGCTGTTTCTG 59.123 50.000 0.00 0.00 0.00 3.02
5499 6108 1.609208 AAAAGACAATCGCTGGCTGT 58.391 45.000 0.00 0.00 45.63 4.40
5509 6118 6.037610 CCGAGCTATTTCTGCTAAAAGACAAT 59.962 38.462 0.00 0.00 41.30 2.71
5512 6121 4.870991 ACCGAGCTATTTCTGCTAAAAGAC 59.129 41.667 0.00 0.00 41.30 3.01
5518 6127 3.447586 AGTTGACCGAGCTATTTCTGCTA 59.552 43.478 0.00 0.00 41.30 3.49
5524 6133 3.914426 ATGGAGTTGACCGAGCTATTT 57.086 42.857 0.00 0.00 0.00 1.40
5532 6141 5.601662 ACAACATATCTATGGAGTTGACCG 58.398 41.667 14.10 0.00 41.41 4.79
5536 6145 9.770097 AGAACATACAACATATCTATGGAGTTG 57.230 33.333 7.77 7.77 43.71 3.16
5565 6174 3.387374 TGACAGGATTTTGCAAACACCAT 59.613 39.130 25.63 17.45 0.00 3.55
5567 6176 3.451141 TGACAGGATTTTGCAAACACC 57.549 42.857 12.39 17.16 0.00 4.16
5568 6177 3.670055 CGATGACAGGATTTTGCAAACAC 59.330 43.478 12.39 8.71 0.00 3.32
5573 6182 1.004161 TCCCGATGACAGGATTTTGCA 59.996 47.619 0.00 0.00 0.00 4.08
5574 6183 1.672881 CTCCCGATGACAGGATTTTGC 59.327 52.381 0.00 0.00 0.00 3.68
5577 6186 3.070734 CAGATCTCCCGATGACAGGATTT 59.929 47.826 0.00 0.00 0.00 2.17
5581 6190 0.033228 GCAGATCTCCCGATGACAGG 59.967 60.000 0.00 0.00 0.00 4.00
5582 6191 0.749049 TGCAGATCTCCCGATGACAG 59.251 55.000 0.00 0.00 0.00 3.51
5583 6192 1.342496 GATGCAGATCTCCCGATGACA 59.658 52.381 0.00 0.00 0.00 3.58
5584 6193 1.617850 AGATGCAGATCTCCCGATGAC 59.382 52.381 0.00 0.00 33.20 3.06
5590 6199 2.433604 TGAGAACAGATGCAGATCTCCC 59.566 50.000 8.59 0.00 36.75 4.30
5594 6203 5.261209 ACTACTGAGAACAGATGCAGATC 57.739 43.478 0.00 0.00 46.03 2.75
5598 6207 5.858381 AGAAAACTACTGAGAACAGATGCA 58.142 37.500 0.00 0.00 46.03 3.96
5637 6246 2.079158 AGGATGAACATTGTGTGCGAG 58.921 47.619 0.00 0.00 0.00 5.03
5639 6248 2.485426 AGAAGGATGAACATTGTGTGCG 59.515 45.455 0.00 0.00 0.00 5.34
5643 6252 3.119602 CCAGCAGAAGGATGAACATTGTG 60.120 47.826 0.00 0.00 36.79 3.33
5644 6253 3.087031 CCAGCAGAAGGATGAACATTGT 58.913 45.455 0.00 0.00 33.82 2.71
5680 6289 2.839486 TGGCAGACTTGTACTCCTTG 57.161 50.000 0.00 0.00 0.00 3.61
5706 6315 8.644619 CGTCGTAGAATAGAACTTTTGAAATGA 58.355 33.333 0.00 0.00 39.69 2.57
5731 6340 5.341617 GTTGAGAGGGAACATAGTTCTACG 58.658 45.833 9.46 0.00 0.00 3.51
5741 6350 2.398754 TGAGAGGTTGAGAGGGAACA 57.601 50.000 0.00 0.00 0.00 3.18
5754 6363 3.323115 TGCTATGCTTCTACCATGAGAGG 59.677 47.826 0.00 0.00 0.00 3.69
5756 6365 3.244009 GCTGCTATGCTTCTACCATGAGA 60.244 47.826 0.00 0.00 0.00 3.27
5760 6369 3.900601 ACTAGCTGCTATGCTTCTACCAT 59.099 43.478 10.23 0.00 43.74 3.55
5783 6399 9.287373 AGTTTACATTGGAAATGCATGAAAAAT 57.713 25.926 0.00 0.00 0.00 1.82
5785 6401 7.307870 GCAGTTTACATTGGAAATGCATGAAAA 60.308 33.333 16.99 0.00 32.79 2.29
5789 6405 4.930405 TGCAGTTTACATTGGAAATGCATG 59.070 37.500 19.25 9.08 37.50 4.06
5816 6434 1.987770 CAGAACGTGCATTGATTTGCC 59.012 47.619 0.00 0.00 42.06 4.52
5817 6435 2.932498 TCAGAACGTGCATTGATTTGC 58.068 42.857 0.00 0.00 43.07 3.68
5818 6436 5.886715 TTTTCAGAACGTGCATTGATTTG 57.113 34.783 0.00 0.00 0.00 2.32
5821 6439 6.700960 TCAAAATTTTCAGAACGTGCATTGAT 59.299 30.769 0.00 0.00 0.00 2.57
5822 6440 6.038985 TCAAAATTTTCAGAACGTGCATTGA 58.961 32.000 0.00 0.00 0.00 2.57
5823 6441 6.271396 TCAAAATTTTCAGAACGTGCATTG 57.729 33.333 0.00 0.00 0.00 2.82
5825 6443 8.761575 AATATCAAAATTTTCAGAACGTGCAT 57.238 26.923 0.00 0.00 0.00 3.96
5826 6444 7.328249 GGAATATCAAAATTTTCAGAACGTGCA 59.672 33.333 0.00 0.00 0.00 4.57
5827 6445 7.328249 TGGAATATCAAAATTTTCAGAACGTGC 59.672 33.333 0.00 0.00 0.00 5.34
5828 6446 8.741101 TGGAATATCAAAATTTTCAGAACGTG 57.259 30.769 0.00 0.00 0.00 4.49
5829 6447 9.410556 CTTGGAATATCAAAATTTTCAGAACGT 57.589 29.630 0.00 0.00 0.00 3.99
5830 6448 9.410556 ACTTGGAATATCAAAATTTTCAGAACG 57.589 29.630 0.00 0.00 0.00 3.95
5850 6468 4.394729 GTTGGTTGTCATTCCTACTTGGA 58.605 43.478 0.00 0.00 44.51 3.53
5851 6469 3.506067 GGTTGGTTGTCATTCCTACTTGG 59.494 47.826 8.25 0.00 31.99 3.61
5852 6470 4.023193 GTGGTTGGTTGTCATTCCTACTTG 60.023 45.833 8.25 0.00 31.99 3.16
5853 6471 4.142038 GTGGTTGGTTGTCATTCCTACTT 58.858 43.478 8.25 0.00 31.99 2.24
5854 6472 3.497942 GGTGGTTGGTTGTCATTCCTACT 60.498 47.826 8.25 0.00 31.99 2.57
5855 6473 2.817844 GGTGGTTGGTTGTCATTCCTAC 59.182 50.000 0.00 0.00 0.00 3.18
5856 6474 2.443632 TGGTGGTTGGTTGTCATTCCTA 59.556 45.455 0.00 0.00 0.00 2.94
5857 6475 1.216678 TGGTGGTTGGTTGTCATTCCT 59.783 47.619 0.00 0.00 0.00 3.36
5858 6476 1.698506 TGGTGGTTGGTTGTCATTCC 58.301 50.000 0.00 0.00 0.00 3.01
5859 6477 3.119495 GCTATGGTGGTTGGTTGTCATTC 60.119 47.826 0.00 0.00 0.00 2.67
5860 6478 2.825532 GCTATGGTGGTTGGTTGTCATT 59.174 45.455 0.00 0.00 0.00 2.57
5861 6479 2.446435 GCTATGGTGGTTGGTTGTCAT 58.554 47.619 0.00 0.00 0.00 3.06
5862 6480 1.546773 GGCTATGGTGGTTGGTTGTCA 60.547 52.381 0.00 0.00 0.00 3.58
5863 6481 1.173913 GGCTATGGTGGTTGGTTGTC 58.826 55.000 0.00 0.00 0.00 3.18
5864 6482 0.777446 AGGCTATGGTGGTTGGTTGT 59.223 50.000 0.00 0.00 0.00 3.32
5865 6483 1.545582 CAAGGCTATGGTGGTTGGTTG 59.454 52.381 0.00 0.00 0.00 3.77
5866 6484 1.923356 CAAGGCTATGGTGGTTGGTT 58.077 50.000 0.00 0.00 0.00 3.67
5867 6485 0.611896 GCAAGGCTATGGTGGTTGGT 60.612 55.000 0.00 0.00 0.00 3.67
5868 6486 0.611618 TGCAAGGCTATGGTGGTTGG 60.612 55.000 0.00 0.00 0.00 3.77
5869 6487 0.813184 CTGCAAGGCTATGGTGGTTG 59.187 55.000 0.00 0.00 0.00 3.77
5870 6488 0.698238 TCTGCAAGGCTATGGTGGTT 59.302 50.000 0.00 0.00 0.00 3.67
5871 6489 0.698238 TTCTGCAAGGCTATGGTGGT 59.302 50.000 0.00 0.00 0.00 4.16
5872 6490 1.065199 TCTTCTGCAAGGCTATGGTGG 60.065 52.381 0.00 0.00 0.00 4.61
5873 6491 2.408271 TCTTCTGCAAGGCTATGGTG 57.592 50.000 0.00 0.00 0.00 4.17
5874 6492 2.507058 TGATCTTCTGCAAGGCTATGGT 59.493 45.455 0.00 0.00 0.00 3.55
5875 6493 2.877168 GTGATCTTCTGCAAGGCTATGG 59.123 50.000 0.00 0.00 0.00 2.74
5876 6494 3.538591 TGTGATCTTCTGCAAGGCTATG 58.461 45.455 0.00 0.00 0.00 2.23
5877 6495 3.920231 TGTGATCTTCTGCAAGGCTAT 57.080 42.857 0.00 0.00 0.00 2.97
5878 6496 3.920231 ATGTGATCTTCTGCAAGGCTA 57.080 42.857 0.00 0.00 0.00 3.93
5879 6497 2.803030 ATGTGATCTTCTGCAAGGCT 57.197 45.000 0.00 0.00 0.00 4.58
5880 6498 3.539604 AGTATGTGATCTTCTGCAAGGC 58.460 45.455 0.00 0.00 0.00 4.35
5881 6499 3.801050 CGAGTATGTGATCTTCTGCAAGG 59.199 47.826 0.00 0.00 0.00 3.61
5882 6500 3.244814 GCGAGTATGTGATCTTCTGCAAG 59.755 47.826 0.00 0.00 0.00 4.01
5883 6501 3.118992 AGCGAGTATGTGATCTTCTGCAA 60.119 43.478 0.00 0.00 0.00 4.08
5884 6502 2.428530 AGCGAGTATGTGATCTTCTGCA 59.571 45.455 0.00 0.00 0.00 4.41
5885 6503 2.793790 CAGCGAGTATGTGATCTTCTGC 59.206 50.000 0.00 0.00 0.00 4.26
5886 6504 4.041049 GTCAGCGAGTATGTGATCTTCTG 58.959 47.826 0.00 0.00 0.00 3.02
5887 6505 3.696548 TGTCAGCGAGTATGTGATCTTCT 59.303 43.478 0.00 0.00 0.00 2.85
5888 6506 4.033990 TGTCAGCGAGTATGTGATCTTC 57.966 45.455 0.00 0.00 0.00 2.87
5889 6507 3.696548 TCTGTCAGCGAGTATGTGATCTT 59.303 43.478 0.00 0.00 0.00 2.40
5890 6508 3.282885 TCTGTCAGCGAGTATGTGATCT 58.717 45.455 0.00 0.00 0.00 2.75
5891 6509 3.699779 TCTGTCAGCGAGTATGTGATC 57.300 47.619 0.00 0.00 0.00 2.92
5892 6510 5.973899 ATATCTGTCAGCGAGTATGTGAT 57.026 39.130 0.00 0.00 0.00 3.06
5893 6511 6.877611 TTATATCTGTCAGCGAGTATGTGA 57.122 37.500 0.00 0.00 0.00 3.58



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.