Multiple sequence alignment - TraesCS2D01G380300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G380300 chr2D 100.000 2635 0 0 1 2635 484850890 484848256 0.000000e+00 4867.0
1 TraesCS2D01G380300 chr2D 89.965 568 35 7 965 1529 484474180 484474728 0.000000e+00 713.0
2 TraesCS2D01G380300 chr2D 79.733 375 53 8 1947 2312 484407077 484406717 1.570000e-62 250.0
3 TraesCS2D01G380300 chr2D 97.590 83 2 0 811 893 484850032 484849950 2.730000e-30 143.0
4 TraesCS2D01G380300 chr2D 97.590 83 2 0 859 941 484850080 484849998 2.730000e-30 143.0
5 TraesCS2D01G380300 chr2A 86.150 787 61 19 1 755 628729053 628728283 0.000000e+00 806.0
6 TraesCS2D01G380300 chr2A 87.611 678 42 11 859 1532 628727898 628727259 0.000000e+00 749.0
7 TraesCS2D01G380300 chr2A 85.943 562 62 7 2080 2635 628700768 628700218 3.780000e-163 584.0
8 TraesCS2D01G380300 chr2A 92.982 228 16 0 2326 2553 628720523 628720296 1.510000e-87 333.0
9 TraesCS2D01G380300 chr2A 87.712 236 22 5 1777 2007 628727124 628726891 4.320000e-68 268.0
10 TraesCS2D01G380300 chr2A 83.206 262 10 14 2062 2322 628726887 628726659 2.660000e-50 209.0
11 TraesCS2D01G380300 chr2A 92.800 125 8 1 770 893 628727940 628727816 2.080000e-41 180.0
12 TraesCS2D01G380300 chr2A 95.455 88 3 1 2549 2635 628703020 628702933 3.540000e-29 139.0
13 TraesCS2D01G380300 chr2A 97.143 35 1 0 811 845 628727850 628727816 2.830000e-05 60.2
14 TraesCS2D01G380300 chr2B 90.845 568 30 7 965 1529 569237538 569238086 0.000000e+00 741.0
15 TraesCS2D01G380300 chr2B 89.054 539 48 6 2107 2635 569489020 569488483 0.000000e+00 658.0
16 TraesCS2D01G380300 chr2B 86.923 130 17 0 1403 1532 569237217 569237088 2.110000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G380300 chr2D 484848256 484850890 2634 True 1717.666667 4867 98.393333 1 2635 3 chr2D.!!$R2 2634
1 TraesCS2D01G380300 chr2D 484474180 484474728 548 False 713.000000 713 89.965000 965 1529 1 chr2D.!!$F1 564
2 TraesCS2D01G380300 chr2A 628726659 628729053 2394 True 378.700000 806 89.103667 1 2322 6 chr2A.!!$R3 2321
3 TraesCS2D01G380300 chr2A 628700218 628703020 2802 True 361.500000 584 90.699000 2080 2635 2 chr2A.!!$R2 555
4 TraesCS2D01G380300 chr2B 569237538 569238086 548 False 741.000000 741 90.845000 965 1529 1 chr2B.!!$F1 564
5 TraesCS2D01G380300 chr2B 569488483 569489020 537 True 658.000000 658 89.054000 2107 2635 1 chr2B.!!$R2 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 271 0.175989 CATGAGCAGAGAGAGCAGCA 59.824 55.0 0.0 0.0 0.0 4.41 F
1667 2035 0.036765 GCACTTACATCGACCCACCA 60.037 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2393 0.036164 AGGCCAGCGTGTTATTCACA 59.964 50.000 5.01 0.0 46.44 3.58 R
2491 2871 1.002659 TGGGCGTATGTGTAAGTGCTT 59.997 47.619 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.919856 AGCACTCACGGCTCACCT 60.920 61.111 0.00 0.00 36.81 4.00
36 37 2.936912 GCACTCACGGCTCACCTCT 61.937 63.158 0.00 0.00 0.00 3.69
38 39 1.107114 CACTCACGGCTCACCTCTAT 58.893 55.000 0.00 0.00 0.00 1.98
44 45 0.898320 CGGCTCACCTCTATATGGGG 59.102 60.000 0.00 0.00 0.00 4.96
84 85 0.693049 ATCTGGTGGTTGGGACTCAC 59.307 55.000 0.00 0.00 0.00 3.51
95 96 1.979693 GGACTCACGGCTCACCTCT 60.980 63.158 0.00 0.00 0.00 3.69
105 106 2.834549 CGGCTCACCTCTATATGGGATT 59.165 50.000 0.00 0.00 0.00 3.01
156 157 7.531716 ACGTGAAGAGAATAACTGAGTAAGAG 58.468 38.462 0.00 0.00 0.00 2.85
192 193 1.126846 CAACTCGCGACCAGATGAAAC 59.873 52.381 3.71 0.00 0.00 2.78
193 194 0.389948 ACTCGCGACCAGATGAAACC 60.390 55.000 3.71 0.00 0.00 3.27
217 218 8.743714 ACCTTTCTTGAATTTGCTAATCCTTAG 58.256 33.333 0.00 0.00 36.32 2.18
269 270 0.460722 TCATGAGCAGAGAGAGCAGC 59.539 55.000 0.00 0.00 0.00 5.25
270 271 0.175989 CATGAGCAGAGAGAGCAGCA 59.824 55.000 0.00 0.00 0.00 4.41
274 275 0.903236 AGCAGAGAGAGCAGCATTCA 59.097 50.000 0.00 0.00 0.00 2.57
278 279 1.015868 GAGAGAGCAGCATTCAAGGC 58.984 55.000 0.00 0.00 0.00 4.35
279 280 0.394080 AGAGAGCAGCATTCAAGGCC 60.394 55.000 0.00 0.00 0.00 5.19
281 282 1.746615 GAGCAGCATTCAAGGCCGA 60.747 57.895 0.00 0.00 0.00 5.54
282 283 1.303561 AGCAGCATTCAAGGCCGAA 60.304 52.632 0.00 0.00 0.00 4.30
293 294 0.988145 AAGGCCGAAGATGGGGATGA 60.988 55.000 0.00 0.00 0.00 2.92
296 297 1.239968 GCCGAAGATGGGGATGATGC 61.240 60.000 0.00 0.00 0.00 3.91
362 369 5.591099 ACGCTTGAAGATCACAACAAATTT 58.409 33.333 0.00 0.00 0.00 1.82
365 372 5.984926 GCTTGAAGATCACAACAAATTTGGA 59.015 36.000 21.74 9.84 0.00 3.53
366 373 6.647895 GCTTGAAGATCACAACAAATTTGGAT 59.352 34.615 21.74 13.92 0.00 3.41
622 651 7.289587 AGAAAAATGAAACCGAACAAAACAG 57.710 32.000 0.00 0.00 0.00 3.16
631 660 3.103007 CCGAACAAAACAGGTCGAAAAC 58.897 45.455 2.61 0.00 0.00 2.43
667 696 1.313091 CCAAAAACCTAGGGCTCGCC 61.313 60.000 14.81 0.00 0.00 5.54
683 712 3.426292 GCTCGCCAAGTTTGTTTCTATCC 60.426 47.826 0.00 0.00 0.00 2.59
712 741 8.759782 ACAGTAGCTAGTTAGGATGTAAACAAT 58.240 33.333 0.00 0.00 0.00 2.71
755 794 6.676237 TTGGTTCAAATTTTTGGAAGAAGC 57.324 33.333 3.38 8.24 38.66 3.86
758 797 5.237127 GGTTCAAATTTTTGGAAGAAGCTGG 59.763 40.000 3.38 0.00 38.66 4.85
760 799 4.408596 TCAAATTTTTGGAAGAAGCTGGGT 59.591 37.500 3.38 0.00 38.66 4.51
762 801 2.452600 TTTTGGAAGAAGCTGGGTGT 57.547 45.000 0.00 0.00 0.00 4.16
773 812 3.073274 AGCTGGGTGTAGGTTCAATTC 57.927 47.619 0.00 0.00 0.00 2.17
778 817 5.570844 GCTGGGTGTAGGTTCAATTCTTAGA 60.571 44.000 0.00 0.00 0.00 2.10
782 821 7.610305 TGGGTGTAGGTTCAATTCTTAGAATTC 59.390 37.037 16.36 6.75 0.00 2.17
784 823 9.886132 GGTGTAGGTTCAATTCTTAGAATTCTA 57.114 33.333 16.36 11.24 0.00 2.10
793 832 9.973450 TCAATTCTTAGAATTCTAGGAGAATCG 57.027 33.333 27.43 21.75 43.67 3.34
794 833 9.202273 CAATTCTTAGAATTCTAGGAGAATCGG 57.798 37.037 27.43 21.86 43.67 4.18
804 1165 3.425162 AGGAGAATCGGCAAAAGAACT 57.575 42.857 0.00 0.00 34.37 3.01
824 1185 3.165875 CTCGGCCTAATTCCTATCCAGA 58.834 50.000 0.00 0.00 0.00 3.86
849 1210 6.807789 ACAAACTCCGGCAAAGTTATTTTTA 58.192 32.000 7.40 0.00 35.96 1.52
875 1236 7.921041 AGGAGAGTAATTCATATCCAGAACA 57.079 36.000 6.33 0.00 0.00 3.18
876 1237 8.324191 AGGAGAGTAATTCATATCCAGAACAA 57.676 34.615 6.33 0.00 0.00 2.83
877 1238 8.772250 AGGAGAGTAATTCATATCCAGAACAAA 58.228 33.333 6.33 0.00 0.00 2.83
878 1239 8.831550 GGAGAGTAATTCATATCCAGAACAAAC 58.168 37.037 0.00 0.00 0.00 2.93
879 1240 9.606631 GAGAGTAATTCATATCCAGAACAAACT 57.393 33.333 0.00 0.00 0.00 2.66
880 1241 9.606631 AGAGTAATTCATATCCAGAACAAACTC 57.393 33.333 0.00 0.00 34.68 3.01
881 1242 8.738645 AGTAATTCATATCCAGAACAAACTCC 57.261 34.615 0.00 0.00 0.00 3.85
882 1243 6.683974 AATTCATATCCAGAACAAACTCCG 57.316 37.500 0.00 0.00 0.00 4.63
883 1244 4.137116 TCATATCCAGAACAAACTCCGG 57.863 45.455 0.00 0.00 0.00 5.14
885 1246 0.400213 ATCCAGAACAAACTCCGGCA 59.600 50.000 0.00 0.00 0.00 5.69
886 1247 0.181587 TCCAGAACAAACTCCGGCAA 59.818 50.000 0.00 0.00 0.00 4.52
887 1248 1.028905 CCAGAACAAACTCCGGCAAA 58.971 50.000 0.00 0.00 0.00 3.68
889 1250 1.676006 CAGAACAAACTCCGGCAAAGT 59.324 47.619 0.00 0.00 0.00 2.66
890 1251 2.099098 CAGAACAAACTCCGGCAAAGTT 59.901 45.455 0.00 0.00 38.59 2.66
892 1253 4.023193 CAGAACAAACTCCGGCAAAGTTAT 60.023 41.667 7.40 0.00 35.96 1.89
893 1254 4.583073 AGAACAAACTCCGGCAAAGTTATT 59.417 37.500 7.40 5.75 35.96 1.40
894 1255 4.929819 ACAAACTCCGGCAAAGTTATTT 57.070 36.364 7.40 0.00 35.96 1.40
895 1256 5.270893 ACAAACTCCGGCAAAGTTATTTT 57.729 34.783 7.40 0.00 35.96 1.82
896 1257 5.666462 ACAAACTCCGGCAAAGTTATTTTT 58.334 33.333 7.40 0.00 35.96 1.94
897 1258 6.807789 ACAAACTCCGGCAAAGTTATTTTTA 58.192 32.000 7.40 0.00 35.96 1.52
899 1260 8.578151 ACAAACTCCGGCAAAGTTATTTTTATA 58.422 29.630 7.40 0.00 35.96 0.98
901 1262 7.329588 ACTCCGGCAAAGTTATTTTTATAGG 57.670 36.000 0.00 0.00 0.00 2.57
902 1263 7.114095 ACTCCGGCAAAGTTATTTTTATAGGA 58.886 34.615 0.00 0.00 0.00 2.94
903 1264 7.282450 ACTCCGGCAAAGTTATTTTTATAGGAG 59.718 37.037 0.00 0.00 38.04 3.69
904 1265 7.340256 TCCGGCAAAGTTATTTTTATAGGAGA 58.660 34.615 0.00 0.00 0.00 3.71
905 1266 7.497909 TCCGGCAAAGTTATTTTTATAGGAGAG 59.502 37.037 0.00 0.00 0.00 3.20
906 1267 7.282450 CCGGCAAAGTTATTTTTATAGGAGAGT 59.718 37.037 0.00 0.00 0.00 3.24
907 1268 9.321562 CGGCAAAGTTATTTTTATAGGAGAGTA 57.678 33.333 0.00 0.00 0.00 2.59
938 1299 1.947456 AGAACAAACTCCGGCAAAGTC 59.053 47.619 0.00 0.00 0.00 3.01
949 1310 3.119065 TCCGGCAAAGTCATGTATACGAA 60.119 43.478 0.00 0.00 0.00 3.85
951 1312 3.863424 CGGCAAAGTCATGTATACGAACT 59.137 43.478 0.00 0.00 0.00 3.01
952 1313 4.026804 CGGCAAAGTCATGTATACGAACTC 60.027 45.833 0.00 0.00 0.00 3.01
955 1316 5.350365 GCAAAGTCATGTATACGAACTCCAA 59.650 40.000 0.00 0.00 0.00 3.53
956 1317 6.672357 GCAAAGTCATGTATACGAACTCCAAC 60.672 42.308 0.00 0.00 0.00 3.77
957 1318 5.916661 AGTCATGTATACGAACTCCAACT 57.083 39.130 0.00 0.00 0.00 3.16
958 1319 5.892568 AGTCATGTATACGAACTCCAACTC 58.107 41.667 0.00 0.00 0.00 3.01
959 1320 4.733887 GTCATGTATACGAACTCCAACTCG 59.266 45.833 0.00 0.00 40.87 4.18
963 1324 2.880822 TACGAACTCCAACTCGTACG 57.119 50.000 9.53 9.53 45.94 3.67
1020 1381 6.399204 ACGTCCAGTATACGATTCAAAAAC 57.601 37.500 2.27 0.00 42.90 2.43
1021 1382 5.927689 ACGTCCAGTATACGATTCAAAAACA 59.072 36.000 2.27 0.00 42.90 2.83
1022 1383 6.424509 ACGTCCAGTATACGATTCAAAAACAA 59.575 34.615 2.27 0.00 42.90 2.83
1023 1384 6.953743 CGTCCAGTATACGATTCAAAAACAAG 59.046 38.462 0.00 0.00 42.90 3.16
1024 1385 7.359765 CGTCCAGTATACGATTCAAAAACAAGT 60.360 37.037 0.00 0.00 42.90 3.16
1025 1386 7.744715 GTCCAGTATACGATTCAAAAACAAGTG 59.255 37.037 0.00 0.00 0.00 3.16
1026 1387 7.021196 CCAGTATACGATTCAAAAACAAGTGG 58.979 38.462 0.00 0.00 0.00 4.00
1039 1400 9.936759 TCAAAAACAAGTGGAGTAAATTTTCTT 57.063 25.926 0.00 0.00 0.00 2.52
1051 1412 3.564235 AATTTTCTTACGCCCGGAAAC 57.436 42.857 0.73 0.00 0.00 2.78
1118 1482 0.539051 ATGGAGAAGAGCGACTTGGG 59.461 55.000 4.10 0.00 39.13 4.12
1176 1540 1.370414 CAACGGCGGCAAAGTCTTG 60.370 57.895 13.24 0.00 35.49 3.02
1536 1904 2.506438 GTGGCGCTGACCGTCTAC 60.506 66.667 7.64 0.00 43.31 2.59
1537 1905 2.675423 TGGCGCTGACCGTCTACT 60.675 61.111 7.64 0.00 43.31 2.57
1538 1906 2.202623 GGCGCTGACCGTCTACTG 60.203 66.667 7.64 0.00 38.83 2.74
1539 1907 2.567049 GCGCTGACCGTCTACTGT 59.433 61.111 0.00 0.00 39.71 3.55
1540 1908 1.514443 GCGCTGACCGTCTACTGTC 60.514 63.158 0.00 0.00 39.71 3.51
1542 1910 1.874562 GCTGACCGTCTACTGTCGT 59.125 57.895 0.00 0.00 33.55 4.34
1543 1911 0.454620 GCTGACCGTCTACTGTCGTG 60.455 60.000 0.00 0.00 33.55 4.35
1544 1912 0.454620 CTGACCGTCTACTGTCGTGC 60.455 60.000 0.00 0.00 33.55 5.34
1545 1913 1.154073 GACCGTCTACTGTCGTGCC 60.154 63.158 0.00 0.00 0.00 5.01
1546 1914 2.202440 CCGTCTACTGTCGTGCCG 60.202 66.667 0.00 0.00 0.00 5.69
1547 1915 2.683859 CCGTCTACTGTCGTGCCGA 61.684 63.158 0.00 0.00 0.00 5.54
1549 1917 1.874562 GTCTACTGTCGTGCCGAGT 59.125 57.895 0.00 0.00 36.23 4.18
1550 1918 0.454620 GTCTACTGTCGTGCCGAGTG 60.455 60.000 0.00 0.00 36.23 3.51
1552 1920 1.583495 CTACTGTCGTGCCGAGTGGA 61.583 60.000 0.00 0.00 36.23 4.02
1553 1921 0.963856 TACTGTCGTGCCGAGTGGAT 60.964 55.000 0.00 0.00 36.23 3.41
1554 1922 0.963856 ACTGTCGTGCCGAGTGGATA 60.964 55.000 0.00 0.00 36.23 2.59
1556 1924 1.607148 CTGTCGTGCCGAGTGGATATA 59.393 52.381 0.00 0.00 36.23 0.86
1557 1925 2.025898 TGTCGTGCCGAGTGGATATAA 58.974 47.619 0.00 0.00 36.23 0.98
1558 1926 2.427812 TGTCGTGCCGAGTGGATATAAA 59.572 45.455 0.00 0.00 36.23 1.40
1560 1928 3.866910 GTCGTGCCGAGTGGATATAAAAA 59.133 43.478 0.00 0.00 36.23 1.94
1561 1929 4.025979 GTCGTGCCGAGTGGATATAAAAAG 60.026 45.833 0.00 0.00 36.23 2.27
1562 1930 3.869246 CGTGCCGAGTGGATATAAAAAGT 59.131 43.478 0.00 0.00 37.49 2.66
1565 1933 3.625764 GCCGAGTGGATATAAAAAGTGCA 59.374 43.478 0.00 0.00 37.49 4.57
1566 1934 4.275936 GCCGAGTGGATATAAAAAGTGCAT 59.724 41.667 0.00 0.00 37.49 3.96
1567 1935 5.560953 GCCGAGTGGATATAAAAAGTGCATC 60.561 44.000 0.00 0.00 37.49 3.91
1569 1937 6.205464 CCGAGTGGATATAAAAAGTGCATCAT 59.795 38.462 0.00 0.00 37.49 2.45
1570 1938 7.293745 CGAGTGGATATAAAAAGTGCATCATC 58.706 38.462 0.00 0.00 0.00 2.92
1571 1939 7.041848 CGAGTGGATATAAAAAGTGCATCATCA 60.042 37.037 0.00 0.00 0.00 3.07
1573 1941 7.557358 AGTGGATATAAAAAGTGCATCATCACA 59.443 33.333 0.00 0.00 39.35 3.58
1575 1943 8.190122 TGGATATAAAAAGTGCATCATCACAAC 58.810 33.333 0.00 0.00 39.35 3.32
1576 1944 7.649306 GGATATAAAAAGTGCATCATCACAACC 59.351 37.037 0.00 0.00 39.35 3.77
1577 1945 4.669206 AAAAAGTGCATCATCACAACCA 57.331 36.364 0.00 0.00 39.35 3.67
1578 1946 4.877378 AAAAGTGCATCATCACAACCAT 57.123 36.364 0.00 0.00 39.35 3.55
1579 1947 4.445452 AAAGTGCATCATCACAACCATC 57.555 40.909 0.00 0.00 39.35 3.51
1580 1948 3.361281 AGTGCATCATCACAACCATCT 57.639 42.857 0.00 0.00 39.35 2.90
1581 1949 4.492494 AGTGCATCATCACAACCATCTA 57.508 40.909 0.00 0.00 39.35 1.98
1582 1950 5.045012 AGTGCATCATCACAACCATCTAT 57.955 39.130 0.00 0.00 39.35 1.98
1583 1951 4.820173 AGTGCATCATCACAACCATCTATG 59.180 41.667 0.00 0.00 39.35 2.23
1584 1952 4.577693 GTGCATCATCACAACCATCTATGT 59.422 41.667 0.00 0.00 36.97 2.29
1586 1954 4.556104 GCATCATCACAACCATCTATGTGC 60.556 45.833 1.18 0.00 45.08 4.57
1587 1955 4.219264 TCATCACAACCATCTATGTGCA 57.781 40.909 1.18 0.00 45.08 4.57
1588 1956 4.587891 TCATCACAACCATCTATGTGCAA 58.412 39.130 0.00 0.00 45.08 4.08
1589 1957 4.637091 TCATCACAACCATCTATGTGCAAG 59.363 41.667 0.00 0.00 45.08 4.01
1591 1959 3.084039 CACAACCATCTATGTGCAAGGT 58.916 45.455 0.00 0.00 40.32 3.50
1592 1960 3.507233 CACAACCATCTATGTGCAAGGTT 59.493 43.478 0.00 0.00 40.32 3.50
1594 1962 5.182950 CACAACCATCTATGTGCAAGGTTTA 59.817 40.000 0.00 0.00 40.32 2.01
1595 1963 5.951747 ACAACCATCTATGTGCAAGGTTTAT 59.048 36.000 0.00 0.00 37.26 1.40
1596 1964 6.127647 ACAACCATCTATGTGCAAGGTTTATG 60.128 38.462 0.00 0.00 37.26 1.90
1598 1966 6.658849 ACCATCTATGTGCAAGGTTTATGTA 58.341 36.000 0.00 0.00 0.00 2.29
1599 1967 7.290061 ACCATCTATGTGCAAGGTTTATGTAT 58.710 34.615 0.00 0.00 0.00 2.29
1600 1968 8.436778 ACCATCTATGTGCAAGGTTTATGTATA 58.563 33.333 0.00 0.00 0.00 1.47
1601 1969 9.453572 CCATCTATGTGCAAGGTTTATGTATAT 57.546 33.333 0.00 0.00 0.00 0.86
1660 2028 4.884458 TTTTGTGTTGCACTTACATCGA 57.116 36.364 0.00 0.00 35.11 3.59
1662 2030 2.139917 TGTGTTGCACTTACATCGACC 58.860 47.619 0.00 0.00 35.11 4.79
1664 2032 1.070914 TGTTGCACTTACATCGACCCA 59.929 47.619 0.00 0.00 0.00 4.51
1665 2033 1.463444 GTTGCACTTACATCGACCCAC 59.537 52.381 0.00 0.00 0.00 4.61
1667 2035 0.036765 GCACTTACATCGACCCACCA 60.037 55.000 0.00 0.00 0.00 4.17
1668 2036 1.406887 GCACTTACATCGACCCACCAT 60.407 52.381 0.00 0.00 0.00 3.55
1669 2037 2.159014 GCACTTACATCGACCCACCATA 60.159 50.000 0.00 0.00 0.00 2.74
1670 2038 3.494398 GCACTTACATCGACCCACCATAT 60.494 47.826 0.00 0.00 0.00 1.78
1672 2040 5.123227 CACTTACATCGACCCACCATATTT 58.877 41.667 0.00 0.00 0.00 1.40
1674 2042 6.094881 CACTTACATCGACCCACCATATTTTT 59.905 38.462 0.00 0.00 0.00 1.94
1701 2069 8.424133 TCTGAACATAGTACAATCACATATGCT 58.576 33.333 1.58 0.00 0.00 3.79
1705 2073 7.500141 ACATAGTACAATCACATATGCTCACA 58.500 34.615 1.58 0.00 0.00 3.58
1706 2074 8.152898 ACATAGTACAATCACATATGCTCACAT 58.847 33.333 1.58 0.00 40.49 3.21
1710 2078 9.645059 AGTACAATCACATATGCTCACATATAC 57.355 33.333 1.58 0.00 45.75 1.47
1711 2079 7.586714 ACAATCACATATGCTCACATATACG 57.413 36.000 1.58 0.00 45.75 3.06
1712 2080 6.091305 ACAATCACATATGCTCACATATACGC 59.909 38.462 1.58 0.00 45.75 4.42
1713 2081 5.132897 TCACATATGCTCACATATACGCA 57.867 39.130 1.58 0.00 45.75 5.24
1715 2083 6.862209 TCACATATGCTCACATATACGCATA 58.138 36.000 1.58 5.43 45.75 3.14
1722 2090 7.812309 TGCTCACATATACGCATATAAACTC 57.188 36.000 0.00 0.00 0.00 3.01
1723 2091 7.375053 TGCTCACATATACGCATATAAACTCA 58.625 34.615 0.00 0.00 0.00 3.41
1724 2092 7.328493 TGCTCACATATACGCATATAAACTCAC 59.672 37.037 0.00 0.00 0.00 3.51
1725 2093 7.328493 GCTCACATATACGCATATAAACTCACA 59.672 37.037 0.00 0.00 0.00 3.58
1726 2094 9.191995 CTCACATATACGCATATAAACTCACAA 57.808 33.333 0.00 0.00 0.00 3.33
1727 2095 8.974408 TCACATATACGCATATAAACTCACAAC 58.026 33.333 0.00 0.00 0.00 3.32
1728 2096 7.944649 CACATATACGCATATAAACTCACAACG 59.055 37.037 0.00 0.00 0.00 4.10
1729 2097 7.863877 ACATATACGCATATAAACTCACAACGA 59.136 33.333 0.00 0.00 0.00 3.85
1730 2098 8.696175 CATATACGCATATAAACTCACAACGAA 58.304 33.333 0.00 0.00 0.00 3.85
1734 2102 5.388994 CGCATATAAACTCACAACGAACACA 60.389 40.000 0.00 0.00 0.00 3.72
1735 2103 5.788531 GCATATAAACTCACAACGAACACAC 59.211 40.000 0.00 0.00 0.00 3.82
1737 2105 3.465122 AAACTCACAACGAACACACAC 57.535 42.857 0.00 0.00 0.00 3.82
1739 2107 1.730064 ACTCACAACGAACACACACAC 59.270 47.619 0.00 0.00 0.00 3.82
1740 2108 1.729517 CTCACAACGAACACACACACA 59.270 47.619 0.00 0.00 0.00 3.72
1741 2109 1.461512 TCACAACGAACACACACACAC 59.538 47.619 0.00 0.00 0.00 3.82
1742 2110 0.800012 ACAACGAACACACACACACC 59.200 50.000 0.00 0.00 0.00 4.16
1743 2111 0.799393 CAACGAACACACACACACCA 59.201 50.000 0.00 0.00 0.00 4.17
1744 2112 1.400142 CAACGAACACACACACACCAT 59.600 47.619 0.00 0.00 0.00 3.55
1745 2113 2.605837 ACGAACACACACACACCATA 57.394 45.000 0.00 0.00 0.00 2.74
1746 2114 2.206750 ACGAACACACACACACCATAC 58.793 47.619 0.00 0.00 0.00 2.39
1747 2115 1.529438 CGAACACACACACACCATACC 59.471 52.381 0.00 0.00 0.00 2.73
1749 2117 1.136828 ACACACACACACCATACCCT 58.863 50.000 0.00 0.00 0.00 4.34
1751 2119 2.706723 ACACACACACACCATACCCTTA 59.293 45.455 0.00 0.00 0.00 2.69
1752 2120 3.329520 ACACACACACACCATACCCTTAT 59.670 43.478 0.00 0.00 0.00 1.73
1753 2121 3.689161 CACACACACACCATACCCTTATG 59.311 47.826 0.00 0.00 35.68 1.90
1754 2122 3.585289 ACACACACACCATACCCTTATGA 59.415 43.478 0.00 0.00 37.86 2.15
1755 2123 4.191544 CACACACACCATACCCTTATGAG 58.808 47.826 0.00 0.00 37.86 2.90
1756 2124 3.206150 CACACACCATACCCTTATGAGC 58.794 50.000 0.00 0.00 37.86 4.26
1757 2125 2.843730 ACACACCATACCCTTATGAGCA 59.156 45.455 0.00 0.00 37.86 4.26
1759 2127 2.843730 ACACCATACCCTTATGAGCACA 59.156 45.455 0.00 0.00 37.86 4.57
1760 2128 3.459598 ACACCATACCCTTATGAGCACAT 59.540 43.478 1.31 1.31 37.86 3.21
1761 2129 4.067896 CACCATACCCTTATGAGCACATC 58.932 47.826 0.00 0.00 37.86 3.06
1763 2131 4.202398 ACCATACCCTTATGAGCACATCTG 60.202 45.833 0.00 0.00 37.86 2.90
1765 2133 3.834489 ACCCTTATGAGCACATCTGAG 57.166 47.619 0.00 0.00 37.87 3.35
1766 2134 3.378512 ACCCTTATGAGCACATCTGAGA 58.621 45.455 0.00 0.00 37.87 3.27
1768 2136 5.150715 ACCCTTATGAGCACATCTGAGATA 58.849 41.667 0.00 0.00 37.87 1.98
1769 2137 5.011533 ACCCTTATGAGCACATCTGAGATAC 59.988 44.000 0.00 0.00 37.87 2.24
1773 2141 4.645762 TGAGCACATCTGAGATACTCAC 57.354 45.455 14.38 1.28 35.39 3.51
1774 2142 4.019174 TGAGCACATCTGAGATACTCACA 58.981 43.478 14.38 3.40 35.39 3.58
1775 2143 4.463891 TGAGCACATCTGAGATACTCACAA 59.536 41.667 14.38 0.00 35.39 3.33
1776 2144 4.753233 AGCACATCTGAGATACTCACAAC 58.247 43.478 0.00 0.00 35.39 3.32
1777 2145 3.868077 GCACATCTGAGATACTCACAACC 59.132 47.826 0.00 0.00 35.39 3.77
1778 2146 4.621510 GCACATCTGAGATACTCACAACCA 60.622 45.833 0.00 0.00 35.39 3.67
1780 2148 5.752472 CACATCTGAGATACTCACAACCATC 59.248 44.000 0.00 0.00 35.39 3.51
1781 2149 5.660417 ACATCTGAGATACTCACAACCATCT 59.340 40.000 0.00 0.00 35.39 2.90
1782 2150 6.836007 ACATCTGAGATACTCACAACCATCTA 59.164 38.462 0.00 0.00 35.39 1.98
1783 2151 7.508636 ACATCTGAGATACTCACAACCATCTAT 59.491 37.037 0.00 0.00 35.39 1.98
1784 2152 7.282332 TCTGAGATACTCACAACCATCTATG 57.718 40.000 0.00 0.00 35.39 2.23
1786 2154 6.809869 TGAGATACTCACAACCATCTATGTG 58.190 40.000 0.00 0.00 46.44 3.21
1787 2155 5.605534 AGATACTCACAACCATCTATGTGC 58.394 41.667 1.18 0.00 45.08 4.57
1788 2156 3.701205 ACTCACAACCATCTATGTGCA 57.299 42.857 1.18 0.00 45.08 4.57
1789 2157 4.019792 ACTCACAACCATCTATGTGCAA 57.980 40.909 0.00 0.00 45.08 4.08
1790 2158 4.005650 ACTCACAACCATCTATGTGCAAG 58.994 43.478 0.00 0.00 45.08 4.01
1792 2160 3.084039 CACAACCATCTATGTGCAAGGT 58.916 45.455 0.00 0.00 40.32 3.50
1793 2161 3.127548 CACAACCATCTATGTGCAAGGTC 59.872 47.826 0.00 0.00 40.32 3.85
1794 2162 3.009473 ACAACCATCTATGTGCAAGGTCT 59.991 43.478 0.00 0.00 0.00 3.85
1795 2163 4.225042 ACAACCATCTATGTGCAAGGTCTA 59.775 41.667 0.00 0.00 0.00 2.59
1796 2164 5.104360 ACAACCATCTATGTGCAAGGTCTAT 60.104 40.000 0.00 0.00 0.00 1.98
1797 2165 4.965814 ACCATCTATGTGCAAGGTCTATG 58.034 43.478 0.00 0.00 0.00 2.23
1798 2166 4.410228 ACCATCTATGTGCAAGGTCTATGT 59.590 41.667 0.00 0.00 0.00 2.29
1799 2167 5.602561 ACCATCTATGTGCAAGGTCTATGTA 59.397 40.000 0.00 0.00 0.00 2.29
1800 2168 6.270927 ACCATCTATGTGCAAGGTCTATGTAT 59.729 38.462 0.00 0.00 0.00 2.29
1801 2169 7.454694 ACCATCTATGTGCAAGGTCTATGTATA 59.545 37.037 0.00 0.00 0.00 1.47
1802 2170 8.481314 CCATCTATGTGCAAGGTCTATGTATAT 58.519 37.037 0.00 0.00 0.00 0.86
1803 2171 9.881649 CATCTATGTGCAAGGTCTATGTATATT 57.118 33.333 0.00 0.00 0.00 1.28
1807 2175 8.752005 ATGTGCAAGGTCTATGTATATTTTGT 57.248 30.769 0.00 0.00 0.00 2.83
1808 2176 9.845740 ATGTGCAAGGTCTATGTATATTTTGTA 57.154 29.630 0.00 0.00 0.00 2.41
1809 2177 9.845740 TGTGCAAGGTCTATGTATATTTTGTAT 57.154 29.630 0.00 0.00 0.00 2.29
1811 2179 9.203421 TGCAAGGTCTATGTATATTTTGTATCG 57.797 33.333 0.00 0.00 0.00 2.92
1812 2180 8.169268 GCAAGGTCTATGTATATTTTGTATCGC 58.831 37.037 0.00 0.00 0.00 4.58
1813 2181 8.656849 CAAGGTCTATGTATATTTTGTATCGCC 58.343 37.037 0.00 0.00 0.00 5.54
1814 2182 7.328737 AGGTCTATGTATATTTTGTATCGCCC 58.671 38.462 0.00 0.00 0.00 6.13
1815 2183 7.180408 AGGTCTATGTATATTTTGTATCGCCCT 59.820 37.037 0.00 0.00 0.00 5.19
1816 2184 8.472413 GGTCTATGTATATTTTGTATCGCCCTA 58.528 37.037 0.00 0.00 0.00 3.53
1817 2185 9.865321 GTCTATGTATATTTTGTATCGCCCTAA 57.135 33.333 0.00 0.00 0.00 2.69
1853 2221 7.851387 TTTTGGTGTATTGCACTTATATCGA 57.149 32.000 4.86 0.00 46.86 3.59
1854 2222 6.838198 TTGGTGTATTGCACTTATATCGAC 57.162 37.500 4.86 0.00 46.86 4.20
1855 2223 5.294356 TGGTGTATTGCACTTATATCGACC 58.706 41.667 4.86 0.00 46.86 4.79
1856 2224 4.384846 GGTGTATTGCACTTATATCGACCG 59.615 45.833 4.86 0.00 46.86 4.79
1858 2226 3.746045 ATTGCACTTATATCGACCGGT 57.254 42.857 6.92 6.92 0.00 5.28
1859 2227 2.787601 TGCACTTATATCGACCGGTC 57.212 50.000 25.28 25.28 0.00 4.79
1860 2228 2.025898 TGCACTTATATCGACCGGTCA 58.974 47.619 32.80 20.42 0.00 4.02
1861 2229 2.626266 TGCACTTATATCGACCGGTCAT 59.374 45.455 32.80 24.98 0.00 3.06
1863 2231 4.056050 GCACTTATATCGACCGGTCATTT 58.944 43.478 32.80 20.64 0.00 2.32
1864 2232 4.510340 GCACTTATATCGACCGGTCATTTT 59.490 41.667 32.80 17.22 0.00 1.82
1865 2233 5.007332 GCACTTATATCGACCGGTCATTTTT 59.993 40.000 32.80 15.85 0.00 1.94
1872 2240 3.496884 TCGACCGGTCATTTTTCTTTCTG 59.503 43.478 32.80 12.63 0.00 3.02
1873 2241 3.250040 CGACCGGTCATTTTTCTTTCTGT 59.750 43.478 32.80 0.00 0.00 3.41
1874 2242 4.261031 CGACCGGTCATTTTTCTTTCTGTT 60.261 41.667 32.80 0.00 0.00 3.16
1875 2243 5.183014 ACCGGTCATTTTTCTTTCTGTTC 57.817 39.130 0.00 0.00 0.00 3.18
1877 2245 4.976116 CCGGTCATTTTTCTTTCTGTTCAC 59.024 41.667 0.00 0.00 0.00 3.18
1878 2246 4.670621 CGGTCATTTTTCTTTCTGTTCACG 59.329 41.667 0.00 0.00 0.00 4.35
1879 2247 4.441087 GGTCATTTTTCTTTCTGTTCACGC 59.559 41.667 0.00 0.00 0.00 5.34
1880 2248 4.144731 GTCATTTTTCTTTCTGTTCACGCG 59.855 41.667 3.53 3.53 0.00 6.01
1881 2249 4.034626 TCATTTTTCTTTCTGTTCACGCGA 59.965 37.500 15.93 0.00 0.00 5.87
1882 2250 4.545823 TTTTTCTTTCTGTTCACGCGAT 57.454 36.364 15.93 0.00 0.00 4.58
1883 2251 3.788434 TTTCTTTCTGTTCACGCGATC 57.212 42.857 15.93 0.00 0.00 3.69
1884 2252 1.336877 TCTTTCTGTTCACGCGATCG 58.663 50.000 15.93 11.69 42.43 3.69
1894 2262 2.807895 CGCGATCGTGGACGGTTT 60.808 61.111 20.77 0.00 40.29 3.27
1895 2263 2.377310 CGCGATCGTGGACGGTTTT 61.377 57.895 20.77 0.00 40.29 2.43
1922 2290 5.055265 AGGGAGATCATAGACTTTCTCGA 57.945 43.478 0.00 0.00 36.34 4.04
1923 2291 5.450453 AGGGAGATCATAGACTTTCTCGAA 58.550 41.667 0.00 0.00 36.34 3.71
1924 2292 5.534654 AGGGAGATCATAGACTTTCTCGAAG 59.465 44.000 0.00 0.00 41.32 3.79
1934 2302 3.995199 ACTTTCTCGAAGTCAAGCATCA 58.005 40.909 0.00 0.00 45.40 3.07
1936 2304 2.662006 TCTCGAAGTCAAGCATCAGG 57.338 50.000 0.00 0.00 0.00 3.86
1940 2308 2.562738 TCGAAGTCAAGCATCAGGAGAA 59.437 45.455 0.00 0.00 0.00 2.87
1941 2309 3.196469 TCGAAGTCAAGCATCAGGAGAAT 59.804 43.478 0.00 0.00 0.00 2.40
1942 2310 3.555139 CGAAGTCAAGCATCAGGAGAATC 59.445 47.826 0.00 0.00 0.00 2.52
1943 2311 3.176552 AGTCAAGCATCAGGAGAATCG 57.823 47.619 0.00 0.00 34.37 3.34
1944 2312 2.499289 AGTCAAGCATCAGGAGAATCGT 59.501 45.455 0.00 0.00 34.37 3.73
1954 2322 4.395581 CAGGAGAATCGTGTTGAGTTTG 57.604 45.455 0.00 0.00 45.32 2.93
1955 2323 3.809832 CAGGAGAATCGTGTTGAGTTTGT 59.190 43.478 0.00 0.00 45.32 2.83
1957 2325 3.560068 GGAGAATCGTGTTGAGTTTGTGT 59.440 43.478 0.00 0.00 34.37 3.72
1959 2327 5.333111 GGAGAATCGTGTTGAGTTTGTGTAC 60.333 44.000 0.00 0.00 34.37 2.90
1960 2328 4.208460 AGAATCGTGTTGAGTTTGTGTACG 59.792 41.667 0.00 0.00 0.00 3.67
1961 2329 3.148026 TCGTGTTGAGTTTGTGTACGA 57.852 42.857 0.00 0.00 36.83 3.43
1962 2330 3.708890 TCGTGTTGAGTTTGTGTACGAT 58.291 40.909 0.00 0.00 34.63 3.73
1963 2331 4.114073 TCGTGTTGAGTTTGTGTACGATT 58.886 39.130 0.00 0.00 34.63 3.34
1964 2332 4.567558 TCGTGTTGAGTTTGTGTACGATTT 59.432 37.500 0.00 0.00 34.63 2.17
1965 2333 4.896238 CGTGTTGAGTTTGTGTACGATTTC 59.104 41.667 0.00 0.00 32.36 2.17
1967 2335 5.007332 GTGTTGAGTTTGTGTACGATTTCCT 59.993 40.000 0.00 0.00 0.00 3.36
1968 2336 5.007234 TGTTGAGTTTGTGTACGATTTCCTG 59.993 40.000 0.00 0.00 0.00 3.86
1969 2337 4.951254 TGAGTTTGTGTACGATTTCCTGA 58.049 39.130 0.00 0.00 0.00 3.86
1970 2338 5.361427 TGAGTTTGTGTACGATTTCCTGAA 58.639 37.500 0.00 0.00 0.00 3.02
1971 2339 5.465390 TGAGTTTGTGTACGATTTCCTGAAG 59.535 40.000 0.00 0.00 0.00 3.02
1972 2340 5.607477 AGTTTGTGTACGATTTCCTGAAGA 58.393 37.500 0.00 0.00 0.00 2.87
1973 2341 5.696724 AGTTTGTGTACGATTTCCTGAAGAG 59.303 40.000 0.00 0.00 0.00 2.85
1974 2342 3.585862 TGTGTACGATTTCCTGAAGAGC 58.414 45.455 0.00 0.00 0.00 4.09
1975 2343 3.258372 TGTGTACGATTTCCTGAAGAGCT 59.742 43.478 0.00 0.00 0.00 4.09
1977 2345 4.799428 GTGTACGATTTCCTGAAGAGCTAC 59.201 45.833 0.00 0.00 0.00 3.58
1982 2350 1.183549 TTCCTGAAGAGCTACCGGAC 58.816 55.000 9.46 0.00 0.00 4.79
1983 2351 1.030488 TCCTGAAGAGCTACCGGACG 61.030 60.000 9.46 0.00 0.00 4.79
1988 2356 4.137879 GAGCTACCGGACGCTCTA 57.862 61.111 29.45 5.02 46.87 2.43
1989 2357 1.943293 GAGCTACCGGACGCTCTAG 59.057 63.158 29.45 14.17 46.87 2.43
1991 2359 0.107312 AGCTACCGGACGCTCTAGAA 60.107 55.000 9.46 0.00 0.00 2.10
1994 2362 2.748532 GCTACCGGACGCTCTAGAATAT 59.251 50.000 9.46 0.00 0.00 1.28
1995 2363 3.937706 GCTACCGGACGCTCTAGAATATA 59.062 47.826 9.46 0.00 0.00 0.86
1996 2364 4.201802 GCTACCGGACGCTCTAGAATATAC 60.202 50.000 9.46 0.00 0.00 1.47
1997 2365 3.080319 ACCGGACGCTCTAGAATATACC 58.920 50.000 9.46 0.00 0.00 2.73
1998 2366 2.095532 CCGGACGCTCTAGAATATACCG 59.904 54.545 0.00 14.06 37.98 4.02
1999 2367 2.475852 CGGACGCTCTAGAATATACCGC 60.476 54.545 10.45 1.16 0.00 5.68
2000 2368 2.159407 GGACGCTCTAGAATATACCGCC 60.159 54.545 0.00 0.00 0.00 6.13
2002 2370 2.093106 CGCTCTAGAATATACCGCCCT 58.907 52.381 0.00 0.00 0.00 5.19
2003 2371 2.159366 CGCTCTAGAATATACCGCCCTG 60.159 54.545 0.00 0.00 0.00 4.45
2004 2372 2.826725 GCTCTAGAATATACCGCCCTGT 59.173 50.000 0.00 0.00 0.00 4.00
2005 2373 3.367498 GCTCTAGAATATACCGCCCTGTG 60.367 52.174 0.00 0.00 0.00 3.66
2006 2374 4.079970 CTCTAGAATATACCGCCCTGTGA 58.920 47.826 0.00 0.00 0.00 3.58
2007 2375 4.673968 TCTAGAATATACCGCCCTGTGAT 58.326 43.478 0.00 0.00 0.00 3.06
2008 2376 5.823312 TCTAGAATATACCGCCCTGTGATA 58.177 41.667 0.00 0.00 0.00 2.15
2009 2377 6.250711 TCTAGAATATACCGCCCTGTGATAA 58.749 40.000 0.00 0.00 0.00 1.75
2010 2378 5.818678 AGAATATACCGCCCTGTGATAAA 57.181 39.130 0.00 0.00 0.00 1.40
2011 2379 5.794894 AGAATATACCGCCCTGTGATAAAG 58.205 41.667 0.00 0.00 0.00 1.85
2012 2380 2.930826 ATACCGCCCTGTGATAAAGG 57.069 50.000 0.00 0.00 34.31 3.11
2015 2383 3.827634 GCCCTGTGATAAAGGCGG 58.172 61.111 0.00 0.00 35.30 6.13
2016 2384 1.223487 GCCCTGTGATAAAGGCGGA 59.777 57.895 0.00 0.00 35.30 5.54
2017 2385 1.095807 GCCCTGTGATAAAGGCGGAC 61.096 60.000 0.00 0.00 35.30 4.79
2018 2386 0.463833 CCCTGTGATAAAGGCGGACC 60.464 60.000 0.00 0.00 33.07 4.46
2020 2388 0.810031 CTGTGATAAAGGCGGACCGG 60.810 60.000 17.22 0.00 42.76 5.28
2029 2397 3.053291 GCGGACCGGCATTTGTGA 61.053 61.111 17.22 0.00 0.00 3.58
2030 2398 2.622011 GCGGACCGGCATTTGTGAA 61.622 57.895 17.22 0.00 0.00 3.18
2031 2399 1.933115 GCGGACCGGCATTTGTGAAT 61.933 55.000 17.22 0.00 0.00 2.57
2032 2400 1.374560 CGGACCGGCATTTGTGAATA 58.625 50.000 5.81 0.00 0.00 1.75
2033 2401 1.740585 CGGACCGGCATTTGTGAATAA 59.259 47.619 5.81 0.00 0.00 1.40
2034 2402 2.477189 CGGACCGGCATTTGTGAATAAC 60.477 50.000 5.81 0.00 0.00 1.89
2035 2403 2.490115 GGACCGGCATTTGTGAATAACA 59.510 45.455 0.00 0.00 36.85 2.41
2044 2412 2.854522 GTGAATAACACGCTGGCCT 58.145 52.632 3.32 0.00 39.78 5.19
2045 2413 2.018542 GTGAATAACACGCTGGCCTA 57.981 50.000 3.32 0.00 39.78 3.93
2046 2414 1.664151 GTGAATAACACGCTGGCCTAC 59.336 52.381 3.32 0.00 39.78 3.18
2047 2415 1.296727 GAATAACACGCTGGCCTACC 58.703 55.000 3.32 0.00 0.00 3.18
2048 2416 0.616371 AATAACACGCTGGCCTACCA 59.384 50.000 3.32 0.00 46.51 3.25
2059 2427 2.858745 TGGCCTACCAGAAGAAAACAC 58.141 47.619 3.32 0.00 42.67 3.32
2060 2428 2.441750 TGGCCTACCAGAAGAAAACACT 59.558 45.455 3.32 0.00 42.67 3.55
2061 2429 3.649023 TGGCCTACCAGAAGAAAACACTA 59.351 43.478 3.32 0.00 42.67 2.74
2062 2430 4.001652 GGCCTACCAGAAGAAAACACTAC 58.998 47.826 0.00 0.00 35.26 2.73
2063 2431 3.678548 GCCTACCAGAAGAAAACACTACG 59.321 47.826 0.00 0.00 0.00 3.51
2064 2432 4.243270 CCTACCAGAAGAAAACACTACGG 58.757 47.826 0.00 0.00 0.00 4.02
2065 2433 3.121738 ACCAGAAGAAAACACTACGGG 57.878 47.619 0.00 0.00 0.00 5.28
2066 2434 2.436911 ACCAGAAGAAAACACTACGGGT 59.563 45.455 0.00 0.00 0.00 5.28
2067 2435 3.642848 ACCAGAAGAAAACACTACGGGTA 59.357 43.478 0.00 0.00 0.00 3.69
2068 2436 4.101430 ACCAGAAGAAAACACTACGGGTAA 59.899 41.667 0.00 0.00 0.00 2.85
2069 2437 4.689345 CCAGAAGAAAACACTACGGGTAAG 59.311 45.833 0.00 0.00 0.00 2.34
2070 2438 4.151867 CAGAAGAAAACACTACGGGTAAGC 59.848 45.833 0.00 0.00 0.00 3.09
2071 2439 4.040095 AGAAGAAAACACTACGGGTAAGCT 59.960 41.667 0.00 0.00 0.00 3.74
2072 2440 4.347360 AGAAAACACTACGGGTAAGCTT 57.653 40.909 3.48 3.48 0.00 3.74
2073 2441 4.711399 AGAAAACACTACGGGTAAGCTTT 58.289 39.130 3.20 0.00 0.00 3.51
2074 2442 5.857268 AGAAAACACTACGGGTAAGCTTTA 58.143 37.500 3.20 0.00 0.00 1.85
2075 2443 5.930569 AGAAAACACTACGGGTAAGCTTTAG 59.069 40.000 3.20 2.06 0.00 1.85
2076 2444 3.242549 ACACTACGGGTAAGCTTTAGC 57.757 47.619 3.20 0.27 42.49 3.09
2077 2445 2.564062 ACACTACGGGTAAGCTTTAGCA 59.436 45.455 3.20 0.00 45.16 3.49
2078 2446 2.928116 CACTACGGGTAAGCTTTAGCAC 59.072 50.000 3.20 0.00 45.16 4.40
2079 2447 2.564062 ACTACGGGTAAGCTTTAGCACA 59.436 45.455 3.20 0.00 45.16 4.57
2080 2448 2.094762 ACGGGTAAGCTTTAGCACAG 57.905 50.000 3.20 0.00 45.16 3.66
2081 2449 1.621814 ACGGGTAAGCTTTAGCACAGA 59.378 47.619 3.20 0.00 45.16 3.41
2082 2450 2.236395 ACGGGTAAGCTTTAGCACAGAT 59.764 45.455 3.20 0.00 45.16 2.90
2083 2451 2.866762 CGGGTAAGCTTTAGCACAGATC 59.133 50.000 3.20 0.00 45.16 2.75
2134 2505 6.568869 AGACGGAAGAGTTTGATAGAATCAG 58.431 40.000 0.00 0.00 40.94 2.90
2142 2513 4.018050 AGTTTGATAGAATCAGCCCCTTGT 60.018 41.667 0.00 0.00 40.94 3.16
2218 2589 4.744631 AGCAAAACCGTTGAAAATAGCAAG 59.255 37.500 0.00 0.00 0.00 4.01
2280 2651 1.134098 CAATAGGCCAACTGTCCGGAT 60.134 52.381 7.81 0.00 0.00 4.18
2319 2690 7.765695 ATTTTCATAGACCACAATGTCAAGT 57.234 32.000 0.00 0.00 37.73 3.16
2322 2693 5.407502 TCATAGACCACAATGTCAAGTACG 58.592 41.667 0.00 0.00 37.73 3.67
2343 2714 4.150274 ACGTCGTTTTTATGTTGCGATACA 59.850 37.500 0.00 0.00 34.10 2.29
2372 2743 6.094464 CCTGCTTGATCTCACAAATTATGACA 59.906 38.462 0.00 0.00 0.00 3.58
2383 2754 5.620822 CACAAATTATGACACACACTCAACG 59.379 40.000 0.00 0.00 0.00 4.10
2448 2819 9.303537 TCGTAAATGTGAACAACGATATAATCA 57.696 29.630 5.08 0.00 37.63 2.57
2484 2863 1.274167 TCTTGCTCCGATTGTAACCGT 59.726 47.619 0.00 0.00 0.00 4.83
2491 2871 5.873712 TGCTCCGATTGTAACCGTAAAATAA 59.126 36.000 0.00 0.00 0.00 1.40
2493 2873 6.903479 GCTCCGATTGTAACCGTAAAATAAAG 59.097 38.462 0.00 0.00 0.00 1.85
2503 2885 6.864360 ACCGTAAAATAAAGCACTTACACA 57.136 33.333 0.00 0.00 0.00 3.72
2577 2960 0.035439 CCCACTTAACACCGCCTGAT 60.035 55.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.924731 TCCCATATAGAGGTGAGCCG 58.075 55.000 0.00 0.00 40.50 5.52
95 96 2.745281 GCGCGGCTAAAAATCCCATATA 59.255 45.455 8.83 0.00 0.00 0.86
105 106 2.867472 GCTTCAGCGCGGCTAAAA 59.133 55.556 8.83 3.17 36.40 1.52
144 145 8.420222 CACTGGATCATATTCTCTTACTCAGTT 58.580 37.037 0.00 0.00 0.00 3.16
147 148 6.239430 GCCACTGGATCATATTCTCTTACTCA 60.239 42.308 0.00 0.00 0.00 3.41
156 157 3.496130 CGAGTTGCCACTGGATCATATTC 59.504 47.826 0.00 0.00 31.22 1.75
217 218 6.272698 ACACGATTTGAATTTTGAAGCAAC 57.727 33.333 0.00 0.00 0.00 4.17
269 270 1.027357 CCCATCTTCGGCCTTGAATG 58.973 55.000 0.00 0.00 0.00 2.67
270 271 0.106519 CCCCATCTTCGGCCTTGAAT 60.107 55.000 0.00 0.00 0.00 2.57
274 275 0.988145 TCATCCCCATCTTCGGCCTT 60.988 55.000 0.00 0.00 0.00 4.35
278 279 0.952497 CGCATCATCCCCATCTTCGG 60.952 60.000 0.00 0.00 0.00 4.30
279 280 0.952497 CCGCATCATCCCCATCTTCG 60.952 60.000 0.00 0.00 0.00 3.79
281 282 0.552848 AACCGCATCATCCCCATCTT 59.447 50.000 0.00 0.00 0.00 2.40
282 283 0.179009 CAACCGCATCATCCCCATCT 60.179 55.000 0.00 0.00 0.00 2.90
336 343 3.064207 TGTTGTGATCTTCAAGCGTACC 58.936 45.455 0.00 0.00 0.00 3.34
587 601 9.825109 TCGGTTTCATTTTTCTATTTTTCCTTT 57.175 25.926 0.00 0.00 0.00 3.11
588 602 9.825109 TTCGGTTTCATTTTTCTATTTTTCCTT 57.175 25.926 0.00 0.00 0.00 3.36
590 604 9.036671 TGTTCGGTTTCATTTTTCTATTTTTCC 57.963 29.630 0.00 0.00 0.00 3.13
667 696 6.377327 ACTGTGTGGATAGAAACAAACTTG 57.623 37.500 0.00 0.00 0.00 3.16
683 712 5.584253 ACATCCTAACTAGCTACTGTGTG 57.416 43.478 0.00 0.00 0.00 3.82
741 770 3.308401 ACACCCAGCTTCTTCCAAAAAT 58.692 40.909 0.00 0.00 0.00 1.82
742 771 2.745968 ACACCCAGCTTCTTCCAAAAA 58.254 42.857 0.00 0.00 0.00 1.94
748 777 2.038557 TGAACCTACACCCAGCTTCTTC 59.961 50.000 0.00 0.00 0.00 2.87
749 778 2.054799 TGAACCTACACCCAGCTTCTT 58.945 47.619 0.00 0.00 0.00 2.52
755 794 6.049955 TCTAAGAATTGAACCTACACCCAG 57.950 41.667 0.00 0.00 0.00 4.45
758 797 8.794335 AGAATTCTAAGAATTGAACCTACACC 57.206 34.615 6.06 0.00 0.00 4.16
773 812 6.090483 TGCCGATTCTCCTAGAATTCTAAG 57.910 41.667 15.85 10.37 44.41 2.18
778 817 5.745227 TCTTTTGCCGATTCTCCTAGAATT 58.255 37.500 3.80 0.00 44.41 2.17
782 821 4.508662 AGTTCTTTTGCCGATTCTCCTAG 58.491 43.478 0.00 0.00 0.00 3.02
784 823 3.339141 GAGTTCTTTTGCCGATTCTCCT 58.661 45.455 0.00 0.00 0.00 3.69
786 825 2.094417 CCGAGTTCTTTTGCCGATTCTC 59.906 50.000 0.00 0.00 0.00 2.87
787 826 2.076863 CCGAGTTCTTTTGCCGATTCT 58.923 47.619 0.00 0.00 0.00 2.40
788 827 1.465856 GCCGAGTTCTTTTGCCGATTC 60.466 52.381 0.00 0.00 0.00 2.52
793 832 1.530323 TTAGGCCGAGTTCTTTTGCC 58.470 50.000 0.00 0.00 42.48 4.52
794 833 3.427638 GGAATTAGGCCGAGTTCTTTTGC 60.428 47.826 18.22 0.86 0.00 3.68
804 1165 3.254093 TCTGGATAGGAATTAGGCCGA 57.746 47.619 0.00 0.00 0.00 5.54
824 1185 4.929819 AATAACTTTGCCGGAGTTTGTT 57.070 36.364 5.05 5.56 38.28 2.83
849 1210 9.607333 TGTTCTGGATATGAATTACTCTCCTAT 57.393 33.333 0.00 0.00 0.00 2.57
865 1226 1.626321 TGCCGGAGTTTGTTCTGGATA 59.374 47.619 5.05 0.00 44.93 2.59
867 1228 0.181587 TTGCCGGAGTTTGTTCTGGA 59.818 50.000 5.05 0.00 44.93 3.86
870 1231 2.052782 ACTTTGCCGGAGTTTGTTCT 57.947 45.000 5.05 0.00 0.00 3.01
871 1232 2.863401 AACTTTGCCGGAGTTTGTTC 57.137 45.000 5.05 0.00 33.76 3.18
872 1233 4.929819 AATAACTTTGCCGGAGTTTGTT 57.070 36.364 5.05 5.56 38.28 2.83
875 1236 8.248253 CCTATAAAAATAACTTTGCCGGAGTTT 58.752 33.333 5.05 0.00 38.28 2.66
876 1237 7.612633 TCCTATAAAAATAACTTTGCCGGAGTT 59.387 33.333 5.05 9.20 40.28 3.01
877 1238 7.114095 TCCTATAAAAATAACTTTGCCGGAGT 58.886 34.615 5.05 0.00 0.00 3.85
878 1239 7.497909 TCTCCTATAAAAATAACTTTGCCGGAG 59.502 37.037 5.05 0.00 32.78 4.63
879 1240 7.340256 TCTCCTATAAAAATAACTTTGCCGGA 58.660 34.615 5.05 0.00 0.00 5.14
880 1241 7.282450 ACTCTCCTATAAAAATAACTTTGCCGG 59.718 37.037 0.00 0.00 0.00 6.13
881 1242 8.209917 ACTCTCCTATAAAAATAACTTTGCCG 57.790 34.615 0.00 0.00 0.00 5.69
897 1258 9.607333 TGTTCTGGATATGAATTACTCTCCTAT 57.393 33.333 0.00 0.00 0.00 2.57
899 1260 7.921041 TGTTCTGGATATGAATTACTCTCCT 57.079 36.000 0.00 0.00 0.00 3.69
901 1262 9.606631 AGTTTGTTCTGGATATGAATTACTCTC 57.393 33.333 0.00 0.00 0.00 3.20
902 1263 9.606631 GAGTTTGTTCTGGATATGAATTACTCT 57.393 33.333 0.00 0.00 32.19 3.24
903 1264 8.831550 GGAGTTTGTTCTGGATATGAATTACTC 58.168 37.037 0.00 0.00 33.02 2.59
904 1265 7.495934 CGGAGTTTGTTCTGGATATGAATTACT 59.504 37.037 0.00 0.00 0.00 2.24
905 1266 7.254795 CCGGAGTTTGTTCTGGATATGAATTAC 60.255 40.741 0.00 0.00 44.93 1.89
906 1267 6.765989 CCGGAGTTTGTTCTGGATATGAATTA 59.234 38.462 0.00 0.00 44.93 1.40
907 1268 5.590259 CCGGAGTTTGTTCTGGATATGAATT 59.410 40.000 0.00 0.00 44.93 2.17
908 1269 5.126067 CCGGAGTTTGTTCTGGATATGAAT 58.874 41.667 0.00 0.00 44.93 2.57
911 1272 2.614057 GCCGGAGTTTGTTCTGGATATG 59.386 50.000 5.05 0.00 44.93 1.78
912 1273 2.238646 TGCCGGAGTTTGTTCTGGATAT 59.761 45.455 5.05 0.00 44.93 1.63
949 1310 5.403766 CGACTATATACGTACGAGTTGGAGT 59.596 44.000 24.41 16.29 0.00 3.85
951 1312 5.528870 TCGACTATATACGTACGAGTTGGA 58.471 41.667 24.41 12.33 0.00 3.53
952 1313 5.631096 TCTCGACTATATACGTACGAGTTGG 59.369 44.000 24.41 11.56 44.51 3.77
955 1316 5.048364 AGGTCTCGACTATATACGTACGAGT 60.048 44.000 24.41 14.45 44.51 4.18
956 1317 5.285845 CAGGTCTCGACTATATACGTACGAG 59.714 48.000 24.41 19.29 45.20 4.18
957 1318 5.048713 TCAGGTCTCGACTATATACGTACGA 60.049 44.000 24.41 6.04 0.00 3.43
958 1319 5.060323 GTCAGGTCTCGACTATATACGTACG 59.940 48.000 15.01 15.01 0.00 3.67
959 1320 5.060323 CGTCAGGTCTCGACTATATACGTAC 59.940 48.000 0.00 0.00 0.00 3.67
960 1321 5.157067 CGTCAGGTCTCGACTATATACGTA 58.843 45.833 0.00 0.00 0.00 3.57
961 1322 3.986572 CGTCAGGTCTCGACTATATACGT 59.013 47.826 0.00 0.00 0.00 3.57
962 1323 3.181532 GCGTCAGGTCTCGACTATATACG 60.182 52.174 0.00 0.00 0.00 3.06
963 1324 3.181532 CGCGTCAGGTCTCGACTATATAC 60.182 52.174 0.00 0.00 0.00 1.47
1020 1381 6.084277 GGCGTAAGAAAATTTACTCCACTTG 58.916 40.000 0.00 0.00 37.99 3.16
1021 1382 5.182570 GGGCGTAAGAAAATTTACTCCACTT 59.817 40.000 7.11 0.00 39.20 3.16
1022 1383 4.698780 GGGCGTAAGAAAATTTACTCCACT 59.301 41.667 7.11 0.00 39.20 4.00
1023 1384 4.436451 CGGGCGTAAGAAAATTTACTCCAC 60.436 45.833 7.11 0.00 39.20 4.02
1024 1385 3.685756 CGGGCGTAAGAAAATTTACTCCA 59.314 43.478 7.11 0.00 39.20 3.86
1025 1386 3.064408 CCGGGCGTAAGAAAATTTACTCC 59.936 47.826 0.00 0.00 37.57 3.85
1026 1387 3.934579 TCCGGGCGTAAGAAAATTTACTC 59.065 43.478 0.00 0.00 43.02 2.59
1036 1397 0.037046 GAAGGTTTCCGGGCGTAAGA 60.037 55.000 0.00 0.00 43.02 2.10
1039 1400 2.664398 GGAAGGTTTCCGGGCGTA 59.336 61.111 0.00 0.00 40.59 4.42
1051 1412 2.695666 AGATGATGTACTCCGTGGAAGG 59.304 50.000 0.00 0.00 0.00 3.46
1176 1540 1.920705 GCGATCATGACGACGTAGACC 60.921 57.143 17.91 0.00 0.00 3.85
1332 1700 1.873355 GCGTGAGGTTGAACGTCGAC 61.873 60.000 12.61 5.18 41.76 4.20
1449 1817 4.988598 CAGAACCCAGGCACGCGT 62.989 66.667 5.58 5.58 0.00 6.01
1491 1859 4.498520 AGCGCGACCATCCTCACG 62.499 66.667 12.10 0.00 0.00 4.35
1542 1910 3.625764 GCACTTTTTATATCCACTCGGCA 59.374 43.478 0.00 0.00 0.00 5.69
1543 1911 3.625764 TGCACTTTTTATATCCACTCGGC 59.374 43.478 0.00 0.00 0.00 5.54
1544 1912 5.527214 TGATGCACTTTTTATATCCACTCGG 59.473 40.000 0.00 0.00 0.00 4.63
1545 1913 6.603237 TGATGCACTTTTTATATCCACTCG 57.397 37.500 0.00 0.00 0.00 4.18
1546 1914 8.072567 GTGATGATGCACTTTTTATATCCACTC 58.927 37.037 0.00 0.00 35.91 3.51
1547 1915 7.557358 TGTGATGATGCACTTTTTATATCCACT 59.443 33.333 0.00 0.00 39.49 4.00
1549 1917 7.878547 TGTGATGATGCACTTTTTATATCCA 57.121 32.000 0.00 0.00 39.49 3.41
1550 1918 7.649306 GGTTGTGATGATGCACTTTTTATATCC 59.351 37.037 0.00 0.00 39.49 2.59
1552 1920 8.065473 TGGTTGTGATGATGCACTTTTTATAT 57.935 30.769 0.00 0.00 39.49 0.86
1553 1921 7.459795 TGGTTGTGATGATGCACTTTTTATA 57.540 32.000 0.00 0.00 39.49 0.98
1554 1922 6.343716 TGGTTGTGATGATGCACTTTTTAT 57.656 33.333 0.00 0.00 39.49 1.40
1556 1924 4.669206 TGGTTGTGATGATGCACTTTTT 57.331 36.364 0.00 0.00 39.49 1.94
1557 1925 4.525487 AGATGGTTGTGATGATGCACTTTT 59.475 37.500 0.00 0.00 39.49 2.27
1558 1926 4.084287 AGATGGTTGTGATGATGCACTTT 58.916 39.130 0.00 0.00 39.49 2.66
1560 1928 3.361281 AGATGGTTGTGATGATGCACT 57.639 42.857 0.00 0.00 39.49 4.40
1561 1929 4.577693 ACATAGATGGTTGTGATGATGCAC 59.422 41.667 0.00 0.00 39.22 4.57
1562 1930 4.577283 CACATAGATGGTTGTGATGATGCA 59.423 41.667 0.00 0.00 44.74 3.96
1565 1933 4.784177 TGCACATAGATGGTTGTGATGAT 58.216 39.130 7.20 0.00 44.74 2.45
1566 1934 4.219264 TGCACATAGATGGTTGTGATGA 57.781 40.909 7.20 0.00 44.74 2.92
1567 1935 4.201980 CCTTGCACATAGATGGTTGTGATG 60.202 45.833 7.20 0.00 44.74 3.07
1569 1937 3.244875 ACCTTGCACATAGATGGTTGTGA 60.245 43.478 7.20 0.00 44.74 3.58
1570 1938 3.084039 ACCTTGCACATAGATGGTTGTG 58.916 45.455 0.00 0.00 44.75 3.33
1571 1939 3.439857 ACCTTGCACATAGATGGTTGT 57.560 42.857 0.00 0.00 0.00 3.32
1573 1941 5.951747 ACATAAACCTTGCACATAGATGGTT 59.048 36.000 0.00 0.00 39.17 3.67
1575 1943 7.750229 ATACATAAACCTTGCACATAGATGG 57.250 36.000 0.00 0.00 0.00 3.51
1638 2006 5.031578 GTCGATGTAAGTGCAACACAAAAA 58.968 37.500 0.00 0.00 41.43 1.94
1639 2007 4.496673 GGTCGATGTAAGTGCAACACAAAA 60.497 41.667 0.00 0.00 41.43 2.44
1641 2009 2.546368 GGTCGATGTAAGTGCAACACAA 59.454 45.455 0.00 0.00 41.43 3.33
1642 2010 2.139917 GGTCGATGTAAGTGCAACACA 58.860 47.619 0.00 0.00 41.43 3.72
1643 2011 1.463444 GGGTCGATGTAAGTGCAACAC 59.537 52.381 0.00 0.00 41.43 3.32
1645 2013 1.463444 GTGGGTCGATGTAAGTGCAAC 59.537 52.381 0.00 0.00 0.00 4.17
1647 2015 0.036765 GGTGGGTCGATGTAAGTGCA 60.037 55.000 0.00 0.00 0.00 4.57
1649 2017 2.691409 ATGGTGGGTCGATGTAAGTG 57.309 50.000 0.00 0.00 0.00 3.16
1674 2042 9.045223 GCATATGTGATTGTACTATGTTCAGAA 57.955 33.333 4.29 0.00 0.00 3.02
1676 2044 8.599055 AGCATATGTGATTGTACTATGTTCAG 57.401 34.615 4.29 0.00 0.00 3.02
1677 2045 8.203485 TGAGCATATGTGATTGTACTATGTTCA 58.797 33.333 4.29 9.83 37.55 3.18
1678 2046 8.491152 GTGAGCATATGTGATTGTACTATGTTC 58.509 37.037 4.29 1.00 33.35 3.18
1680 2048 7.500141 TGTGAGCATATGTGATTGTACTATGT 58.500 34.615 4.29 0.00 0.00 2.29
1681 2049 7.951530 TGTGAGCATATGTGATTGTACTATG 57.048 36.000 4.29 0.00 0.00 2.23
1684 2052 9.645059 GTATATGTGAGCATATGTGATTGTACT 57.355 33.333 4.29 0.00 45.15 2.73
1685 2053 8.587111 CGTATATGTGAGCATATGTGATTGTAC 58.413 37.037 4.29 0.00 45.15 2.90
1687 2055 6.091305 GCGTATATGTGAGCATATGTGATTGT 59.909 38.462 4.29 0.00 45.15 2.71
1688 2056 6.091169 TGCGTATATGTGAGCATATGTGATTG 59.909 38.462 4.29 0.00 45.15 2.67
1690 2058 5.723295 TGCGTATATGTGAGCATATGTGAT 58.277 37.500 4.29 0.00 45.15 3.06
1691 2059 5.132897 TGCGTATATGTGAGCATATGTGA 57.867 39.130 4.29 0.00 45.15 3.58
1698 2066 7.328493 GTGAGTTTATATGCGTATATGTGAGCA 59.672 37.037 15.36 6.27 44.13 4.26
1699 2067 7.328493 TGTGAGTTTATATGCGTATATGTGAGC 59.672 37.037 15.36 4.70 31.97 4.26
1701 2069 8.974408 GTTGTGAGTTTATATGCGTATATGTGA 58.026 33.333 15.36 0.09 31.97 3.58
1705 2073 8.697067 GTTCGTTGTGAGTTTATATGCGTATAT 58.303 33.333 10.93 10.93 34.04 0.86
1706 2074 7.701501 TGTTCGTTGTGAGTTTATATGCGTATA 59.298 33.333 1.29 1.29 0.00 1.47
1710 2078 5.013236 GTGTTCGTTGTGAGTTTATATGCG 58.987 41.667 0.00 0.00 0.00 4.73
1711 2079 5.788531 GTGTGTTCGTTGTGAGTTTATATGC 59.211 40.000 0.00 0.00 0.00 3.14
1712 2080 6.790350 GTGTGTGTTCGTTGTGAGTTTATATG 59.210 38.462 0.00 0.00 0.00 1.78
1713 2081 6.480651 TGTGTGTGTTCGTTGTGAGTTTATAT 59.519 34.615 0.00 0.00 0.00 0.86
1715 2083 4.632251 TGTGTGTGTTCGTTGTGAGTTTAT 59.368 37.500 0.00 0.00 0.00 1.40
1717 2085 2.809119 TGTGTGTGTTCGTTGTGAGTTT 59.191 40.909 0.00 0.00 0.00 2.66
1718 2086 2.158841 GTGTGTGTGTTCGTTGTGAGTT 59.841 45.455 0.00 0.00 0.00 3.01
1719 2087 1.730064 GTGTGTGTGTTCGTTGTGAGT 59.270 47.619 0.00 0.00 0.00 3.41
1720 2088 1.729517 TGTGTGTGTGTTCGTTGTGAG 59.270 47.619 0.00 0.00 0.00 3.51
1721 2089 1.461512 GTGTGTGTGTGTTCGTTGTGA 59.538 47.619 0.00 0.00 0.00 3.58
1722 2090 1.465020 GGTGTGTGTGTGTTCGTTGTG 60.465 52.381 0.00 0.00 0.00 3.33
1723 2091 0.800012 GGTGTGTGTGTGTTCGTTGT 59.200 50.000 0.00 0.00 0.00 3.32
1724 2092 0.799393 TGGTGTGTGTGTGTTCGTTG 59.201 50.000 0.00 0.00 0.00 4.10
1725 2093 1.745232 ATGGTGTGTGTGTGTTCGTT 58.255 45.000 0.00 0.00 0.00 3.85
1726 2094 2.206750 GTATGGTGTGTGTGTGTTCGT 58.793 47.619 0.00 0.00 0.00 3.85
1727 2095 1.529438 GGTATGGTGTGTGTGTGTTCG 59.471 52.381 0.00 0.00 0.00 3.95
1728 2096 1.877443 GGGTATGGTGTGTGTGTGTTC 59.123 52.381 0.00 0.00 0.00 3.18
1729 2097 1.493022 AGGGTATGGTGTGTGTGTGTT 59.507 47.619 0.00 0.00 0.00 3.32
1730 2098 1.136828 AGGGTATGGTGTGTGTGTGT 58.863 50.000 0.00 0.00 0.00 3.72
1734 2102 3.370527 GCTCATAAGGGTATGGTGTGTGT 60.371 47.826 0.00 0.00 38.15 3.72
1735 2103 3.206150 GCTCATAAGGGTATGGTGTGTG 58.794 50.000 0.00 0.00 38.15 3.82
1737 2105 3.206150 GTGCTCATAAGGGTATGGTGTG 58.794 50.000 0.00 0.00 38.15 3.82
1739 2107 3.558931 TGTGCTCATAAGGGTATGGTG 57.441 47.619 0.00 0.00 38.15 4.17
1740 2108 3.976654 AGATGTGCTCATAAGGGTATGGT 59.023 43.478 0.32 0.00 38.15 3.55
1741 2109 4.040829 TCAGATGTGCTCATAAGGGTATGG 59.959 45.833 0.32 0.00 38.15 2.74
1742 2110 5.011431 TCTCAGATGTGCTCATAAGGGTATG 59.989 44.000 0.32 0.00 38.84 2.39
1743 2111 5.150715 TCTCAGATGTGCTCATAAGGGTAT 58.849 41.667 0.32 0.00 34.06 2.73
1744 2112 4.546674 TCTCAGATGTGCTCATAAGGGTA 58.453 43.478 0.32 0.00 34.06 3.69
1745 2113 3.378512 TCTCAGATGTGCTCATAAGGGT 58.621 45.455 0.32 0.00 34.06 4.34
1746 2114 4.620589 ATCTCAGATGTGCTCATAAGGG 57.379 45.455 0.32 0.00 34.06 3.95
1747 2115 6.015603 TGAGTATCTCAGATGTGCTCATAAGG 60.016 42.308 11.89 0.00 35.39 2.69
1749 2117 6.322201 TGTGAGTATCTCAGATGTGCTCATAA 59.678 38.462 16.41 9.22 41.46 1.90
1751 2119 4.648307 TGTGAGTATCTCAGATGTGCTCAT 59.352 41.667 16.41 0.00 41.46 2.90
1752 2120 4.019174 TGTGAGTATCTCAGATGTGCTCA 58.981 43.478 11.89 11.89 41.46 4.26
1753 2121 4.645762 TGTGAGTATCTCAGATGTGCTC 57.354 45.455 0.00 3.38 41.46 4.26
1754 2122 4.382470 GGTTGTGAGTATCTCAGATGTGCT 60.382 45.833 0.00 0.00 41.46 4.40
1755 2123 3.868077 GGTTGTGAGTATCTCAGATGTGC 59.132 47.826 0.00 0.00 41.46 4.57
1756 2124 5.077134 TGGTTGTGAGTATCTCAGATGTG 57.923 43.478 0.00 0.00 41.46 3.21
1757 2125 5.660417 AGATGGTTGTGAGTATCTCAGATGT 59.340 40.000 0.00 0.00 41.46 3.06
1759 2127 7.508636 ACATAGATGGTTGTGAGTATCTCAGAT 59.491 37.037 0.00 0.00 41.46 2.90
1760 2128 6.836007 ACATAGATGGTTGTGAGTATCTCAGA 59.164 38.462 0.00 0.00 41.46 3.27
1761 2129 6.922407 CACATAGATGGTTGTGAGTATCTCAG 59.078 42.308 0.00 0.00 44.74 3.35
1763 2131 5.694006 GCACATAGATGGTTGTGAGTATCTC 59.306 44.000 7.20 0.00 44.74 2.75
1765 2133 5.359756 TGCACATAGATGGTTGTGAGTATC 58.640 41.667 7.20 0.00 44.74 2.24
1766 2134 5.357742 TGCACATAGATGGTTGTGAGTAT 57.642 39.130 7.20 0.00 44.74 2.12
1768 2136 3.701205 TGCACATAGATGGTTGTGAGT 57.299 42.857 7.20 0.00 44.74 3.41
1769 2137 3.376234 CCTTGCACATAGATGGTTGTGAG 59.624 47.826 7.20 0.00 44.74 3.51
1773 2141 3.614092 AGACCTTGCACATAGATGGTTG 58.386 45.455 0.00 0.00 0.00 3.77
1774 2142 5.104360 ACATAGACCTTGCACATAGATGGTT 60.104 40.000 0.00 0.00 0.00 3.67
1775 2143 4.410228 ACATAGACCTTGCACATAGATGGT 59.590 41.667 0.00 0.00 0.00 3.55
1776 2144 4.965814 ACATAGACCTTGCACATAGATGG 58.034 43.478 0.00 0.00 0.00 3.51
1777 2145 9.881649 AATATACATAGACCTTGCACATAGATG 57.118 33.333 0.00 0.00 0.00 2.90
1781 2149 9.845740 ACAAAATATACATAGACCTTGCACATA 57.154 29.630 0.00 0.00 0.00 2.29
1782 2150 8.752005 ACAAAATATACATAGACCTTGCACAT 57.248 30.769 0.00 0.00 0.00 3.21
1783 2151 9.845740 ATACAAAATATACATAGACCTTGCACA 57.154 29.630 0.00 0.00 0.00 4.57
1786 2154 8.169268 GCGATACAAAATATACATAGACCTTGC 58.831 37.037 0.00 0.00 0.00 4.01
1787 2155 8.656849 GGCGATACAAAATATACATAGACCTTG 58.343 37.037 0.00 0.00 0.00 3.61
1788 2156 7.822822 GGGCGATACAAAATATACATAGACCTT 59.177 37.037 0.00 0.00 0.00 3.50
1789 2157 7.180408 AGGGCGATACAAAATATACATAGACCT 59.820 37.037 0.00 0.00 0.00 3.85
1790 2158 7.328737 AGGGCGATACAAAATATACATAGACC 58.671 38.462 0.00 0.00 0.00 3.85
1835 2203 4.038282 ACCGGTCGATATAAGTGCAATACA 59.962 41.667 0.00 0.00 0.00 2.29
1836 2204 4.553323 ACCGGTCGATATAAGTGCAATAC 58.447 43.478 0.00 0.00 0.00 1.89
1837 2205 4.278919 TGACCGGTCGATATAAGTGCAATA 59.721 41.667 28.70 2.96 0.00 1.90
1838 2206 3.069016 TGACCGGTCGATATAAGTGCAAT 59.931 43.478 28.70 0.00 0.00 3.56
1839 2207 2.427812 TGACCGGTCGATATAAGTGCAA 59.572 45.455 28.70 4.13 0.00 4.08
1840 2208 2.025898 TGACCGGTCGATATAAGTGCA 58.974 47.619 28.70 5.06 0.00 4.57
1841 2209 2.787601 TGACCGGTCGATATAAGTGC 57.212 50.000 28.70 2.14 0.00 4.40
1842 2210 6.479001 AGAAAAATGACCGGTCGATATAAGTG 59.521 38.462 28.70 0.00 0.00 3.16
1843 2211 6.579865 AGAAAAATGACCGGTCGATATAAGT 58.420 36.000 28.70 7.31 0.00 2.24
1844 2212 7.478520 AAGAAAAATGACCGGTCGATATAAG 57.521 36.000 28.70 0.00 0.00 1.73
1845 2213 7.767198 AGAAAGAAAAATGACCGGTCGATATAA 59.233 33.333 28.70 11.38 0.00 0.98
1846 2214 7.223971 CAGAAAGAAAAATGACCGGTCGATATA 59.776 37.037 28.70 12.16 0.00 0.86
1847 2215 6.037172 CAGAAAGAAAAATGACCGGTCGATAT 59.963 38.462 28.70 14.79 0.00 1.63
1849 2217 4.154195 CAGAAAGAAAAATGACCGGTCGAT 59.846 41.667 28.70 19.63 0.00 3.59
1850 2218 3.496884 CAGAAAGAAAAATGACCGGTCGA 59.503 43.478 28.70 18.27 0.00 4.20
1853 2221 4.642885 TGAACAGAAAGAAAAATGACCGGT 59.357 37.500 6.92 6.92 0.00 5.28
1854 2222 4.976116 GTGAACAGAAAGAAAAATGACCGG 59.024 41.667 0.00 0.00 0.00 5.28
1855 2223 4.670621 CGTGAACAGAAAGAAAAATGACCG 59.329 41.667 0.00 0.00 0.00 4.79
1856 2224 4.441087 GCGTGAACAGAAAGAAAAATGACC 59.559 41.667 0.00 0.00 0.00 4.02
1858 2226 4.034626 TCGCGTGAACAGAAAGAAAAATGA 59.965 37.500 5.77 0.00 0.00 2.57
1859 2227 4.278858 TCGCGTGAACAGAAAGAAAAATG 58.721 39.130 5.77 0.00 0.00 2.32
1860 2228 4.545823 TCGCGTGAACAGAAAGAAAAAT 57.454 36.364 5.77 0.00 0.00 1.82
1861 2229 4.523813 GATCGCGTGAACAGAAAGAAAAA 58.476 39.130 5.77 0.00 0.00 1.94
1863 2231 2.154963 CGATCGCGTGAACAGAAAGAAA 59.845 45.455 5.77 0.00 0.00 2.52
1864 2232 1.719246 CGATCGCGTGAACAGAAAGAA 59.281 47.619 5.77 0.00 0.00 2.52
1865 2233 1.336877 CGATCGCGTGAACAGAAAGA 58.663 50.000 5.77 0.00 0.00 2.52
1877 2245 1.893168 AAAAACCGTCCACGATCGCG 61.893 55.000 16.60 10.50 43.02 5.87
1878 2246 1.864176 AAAAACCGTCCACGATCGC 59.136 52.632 16.60 0.00 43.02 4.58
1895 2263 8.198109 CGAGAAAGTCTATGATCTCCCTAAAAA 58.802 37.037 0.00 0.00 35.91 1.94
1897 2265 7.061054 TCGAGAAAGTCTATGATCTCCCTAAA 58.939 38.462 0.00 0.00 35.91 1.85
1898 2266 6.602278 TCGAGAAAGTCTATGATCTCCCTAA 58.398 40.000 0.00 0.00 35.91 2.69
1899 2267 6.189036 TCGAGAAAGTCTATGATCTCCCTA 57.811 41.667 0.00 0.00 35.91 3.53
1900 2268 5.055265 TCGAGAAAGTCTATGATCTCCCT 57.945 43.478 0.00 0.00 35.91 4.20
1901 2269 5.300792 ACTTCGAGAAAGTCTATGATCTCCC 59.699 44.000 0.00 0.00 45.28 4.30
1914 2282 3.370366 CCTGATGCTTGACTTCGAGAAAG 59.630 47.826 0.00 0.00 41.08 2.62
1915 2283 3.006859 TCCTGATGCTTGACTTCGAGAAA 59.993 43.478 0.00 0.00 0.00 2.52
1916 2284 2.562738 TCCTGATGCTTGACTTCGAGAA 59.437 45.455 0.00 0.00 0.00 2.87
1917 2285 2.165234 CTCCTGATGCTTGACTTCGAGA 59.835 50.000 0.00 0.00 0.00 4.04
1918 2286 2.165234 TCTCCTGATGCTTGACTTCGAG 59.835 50.000 0.00 0.00 0.00 4.04
1920 2288 2.662006 TCTCCTGATGCTTGACTTCG 57.338 50.000 0.00 0.00 0.00 3.79
1922 2290 3.055530 ACGATTCTCCTGATGCTTGACTT 60.056 43.478 0.00 0.00 0.00 3.01
1923 2291 2.499289 ACGATTCTCCTGATGCTTGACT 59.501 45.455 0.00 0.00 0.00 3.41
1924 2292 2.606725 CACGATTCTCCTGATGCTTGAC 59.393 50.000 0.00 0.00 0.00 3.18
1925 2293 2.234661 ACACGATTCTCCTGATGCTTGA 59.765 45.455 0.00 0.00 0.00 3.02
1927 2295 3.005554 CAACACGATTCTCCTGATGCTT 58.994 45.455 0.00 0.00 0.00 3.91
1929 2297 2.606725 CTCAACACGATTCTCCTGATGC 59.393 50.000 0.00 0.00 0.00 3.91
1930 2298 3.854666 ACTCAACACGATTCTCCTGATG 58.145 45.455 0.00 0.00 0.00 3.07
1931 2299 4.543590 AACTCAACACGATTCTCCTGAT 57.456 40.909 0.00 0.00 0.00 2.90
1932 2300 4.058124 CAAACTCAACACGATTCTCCTGA 58.942 43.478 0.00 0.00 0.00 3.86
1933 2301 3.809832 ACAAACTCAACACGATTCTCCTG 59.190 43.478 0.00 0.00 0.00 3.86
1934 2302 3.809832 CACAAACTCAACACGATTCTCCT 59.190 43.478 0.00 0.00 0.00 3.69
1936 2304 4.795970 ACACAAACTCAACACGATTCTC 57.204 40.909 0.00 0.00 0.00 2.87
1940 2308 3.708890 TCGTACACAAACTCAACACGAT 58.291 40.909 0.00 0.00 32.57 3.73
1941 2309 3.148026 TCGTACACAAACTCAACACGA 57.852 42.857 0.00 0.00 34.87 4.35
1942 2310 4.446857 AATCGTACACAAACTCAACACG 57.553 40.909 0.00 0.00 0.00 4.49
1943 2311 5.007332 AGGAAATCGTACACAAACTCAACAC 59.993 40.000 0.00 0.00 0.00 3.32
1944 2312 5.007234 CAGGAAATCGTACACAAACTCAACA 59.993 40.000 0.00 0.00 0.00 3.33
1946 2314 5.361427 TCAGGAAATCGTACACAAACTCAA 58.639 37.500 0.00 0.00 0.00 3.02
1947 2315 4.951254 TCAGGAAATCGTACACAAACTCA 58.049 39.130 0.00 0.00 0.00 3.41
1948 2316 5.694910 TCTTCAGGAAATCGTACACAAACTC 59.305 40.000 0.00 0.00 0.00 3.01
1949 2317 5.607477 TCTTCAGGAAATCGTACACAAACT 58.393 37.500 0.00 0.00 0.00 2.66
1950 2318 5.614887 GCTCTTCAGGAAATCGTACACAAAC 60.615 44.000 0.00 0.00 0.00 2.93
1953 2321 3.258372 AGCTCTTCAGGAAATCGTACACA 59.742 43.478 0.00 0.00 0.00 3.72
1954 2322 3.851098 AGCTCTTCAGGAAATCGTACAC 58.149 45.455 0.00 0.00 0.00 2.90
1955 2323 4.142227 GGTAGCTCTTCAGGAAATCGTACA 60.142 45.833 0.00 0.00 0.00 2.90
1957 2325 3.066342 CGGTAGCTCTTCAGGAAATCGTA 59.934 47.826 0.00 0.00 0.00 3.43
1959 2327 2.464865 CGGTAGCTCTTCAGGAAATCG 58.535 52.381 0.00 0.00 0.00 3.34
1960 2328 2.431057 TCCGGTAGCTCTTCAGGAAATC 59.569 50.000 0.00 0.00 0.00 2.17
1961 2329 2.168728 GTCCGGTAGCTCTTCAGGAAAT 59.831 50.000 0.00 0.00 0.00 2.17
1962 2330 1.549170 GTCCGGTAGCTCTTCAGGAAA 59.451 52.381 0.00 0.00 0.00 3.13
1963 2331 1.183549 GTCCGGTAGCTCTTCAGGAA 58.816 55.000 0.00 0.00 0.00 3.36
1964 2332 1.030488 CGTCCGGTAGCTCTTCAGGA 61.030 60.000 0.00 0.00 0.00 3.86
1965 2333 1.433879 CGTCCGGTAGCTCTTCAGG 59.566 63.158 0.00 0.00 0.00 3.86
1967 2335 1.677966 AGCGTCCGGTAGCTCTTCA 60.678 57.895 18.06 0.00 39.98 3.02
1968 2336 3.198582 AGCGTCCGGTAGCTCTTC 58.801 61.111 18.06 0.00 39.98 2.87
1973 2341 0.953003 ATTCTAGAGCGTCCGGTAGC 59.047 55.000 14.39 14.39 0.00 3.58
1974 2342 4.332268 GGTATATTCTAGAGCGTCCGGTAG 59.668 50.000 0.00 0.00 0.00 3.18
1975 2343 4.256920 GGTATATTCTAGAGCGTCCGGTA 58.743 47.826 0.00 0.00 0.00 4.02
1977 2345 2.095532 CGGTATATTCTAGAGCGTCCGG 59.904 54.545 0.00 0.00 36.30 5.14
1982 2350 2.093106 AGGGCGGTATATTCTAGAGCG 58.907 52.381 0.00 0.00 42.96 5.03
1983 2351 2.826725 ACAGGGCGGTATATTCTAGAGC 59.173 50.000 0.00 0.00 0.00 4.09
1988 2356 5.280011 CCTTTATCACAGGGCGGTATATTCT 60.280 44.000 0.00 0.00 0.00 2.40
1989 2357 4.935808 CCTTTATCACAGGGCGGTATATTC 59.064 45.833 0.00 0.00 0.00 1.75
1991 2359 3.307480 GCCTTTATCACAGGGCGGTATAT 60.307 47.826 0.00 0.00 35.08 0.86
1994 2362 0.179468 GCCTTTATCACAGGGCGGTA 59.821 55.000 0.00 0.00 35.08 4.02
1995 2363 1.077716 GCCTTTATCACAGGGCGGT 60.078 57.895 0.00 0.00 35.08 5.68
1996 2364 3.827634 GCCTTTATCACAGGGCGG 58.172 61.111 0.00 0.00 35.08 6.13
1998 2366 1.095807 GTCCGCCTTTATCACAGGGC 61.096 60.000 0.00 0.00 41.02 5.19
1999 2367 0.463833 GGTCCGCCTTTATCACAGGG 60.464 60.000 0.00 0.00 31.20 4.45
2000 2368 0.810031 CGGTCCGCCTTTATCACAGG 60.810 60.000 0.00 0.00 34.08 4.00
2002 2370 1.219664 CCGGTCCGCCTTTATCACA 59.780 57.895 5.50 0.00 0.00 3.58
2003 2371 2.178235 GCCGGTCCGCCTTTATCAC 61.178 63.158 5.50 0.00 0.00 3.06
2004 2372 1.978455 ATGCCGGTCCGCCTTTATCA 61.978 55.000 5.50 0.00 0.00 2.15
2005 2373 0.818040 AATGCCGGTCCGCCTTTATC 60.818 55.000 5.50 0.00 0.00 1.75
2006 2374 0.395173 AAATGCCGGTCCGCCTTTAT 60.395 50.000 5.50 0.00 0.00 1.40
2007 2375 1.001887 AAATGCCGGTCCGCCTTTA 60.002 52.632 5.50 0.00 0.00 1.85
2008 2376 2.282887 AAATGCCGGTCCGCCTTT 60.283 55.556 5.50 4.62 0.00 3.11
2009 2377 3.061848 CAAATGCCGGTCCGCCTT 61.062 61.111 5.50 0.00 0.00 4.35
2010 2378 4.344865 ACAAATGCCGGTCCGCCT 62.345 61.111 5.50 0.00 0.00 5.52
2011 2379 4.114997 CACAAATGCCGGTCCGCC 62.115 66.667 5.50 0.00 0.00 6.13
2012 2380 1.933115 ATTCACAAATGCCGGTCCGC 61.933 55.000 5.50 1.95 0.00 5.54
2014 2382 2.490115 TGTTATTCACAAATGCCGGTCC 59.510 45.455 1.90 0.00 29.87 4.46
2015 2383 3.498082 GTGTTATTCACAAATGCCGGTC 58.502 45.455 1.90 0.00 45.51 4.79
2016 2384 2.095466 CGTGTTATTCACAAATGCCGGT 60.095 45.455 1.90 0.00 46.44 5.28
2017 2385 2.514902 CGTGTTATTCACAAATGCCGG 58.485 47.619 0.00 0.00 46.44 6.13
2018 2386 1.910819 GCGTGTTATTCACAAATGCCG 59.089 47.619 0.00 0.00 46.44 5.69
2020 2388 2.916716 CCAGCGTGTTATTCACAAATGC 59.083 45.455 0.00 0.00 46.44 3.56
2021 2389 2.916716 GCCAGCGTGTTATTCACAAATG 59.083 45.455 0.00 0.00 46.44 2.32
2022 2390 2.094752 GGCCAGCGTGTTATTCACAAAT 60.095 45.455 0.00 0.00 46.44 2.32
2023 2391 1.268352 GGCCAGCGTGTTATTCACAAA 59.732 47.619 0.00 0.00 46.44 2.83
2024 2392 0.878416 GGCCAGCGTGTTATTCACAA 59.122 50.000 0.00 0.00 46.44 3.33
2025 2393 0.036164 AGGCCAGCGTGTTATTCACA 59.964 50.000 5.01 0.00 46.44 3.58
2026 2394 1.664151 GTAGGCCAGCGTGTTATTCAC 59.336 52.381 5.01 0.00 43.03 3.18
2027 2395 1.406341 GGTAGGCCAGCGTGTTATTCA 60.406 52.381 5.01 0.00 34.09 2.57
2028 2396 1.296727 GGTAGGCCAGCGTGTTATTC 58.703 55.000 5.01 0.00 34.09 1.75
2029 2397 0.616371 TGGTAGGCCAGCGTGTTATT 59.384 50.000 5.01 0.00 40.46 1.40
2030 2398 2.292866 TGGTAGGCCAGCGTGTTAT 58.707 52.632 5.01 0.00 40.46 1.89
2031 2399 3.794481 TGGTAGGCCAGCGTGTTA 58.206 55.556 5.01 0.00 40.46 2.41
2039 2407 2.441750 AGTGTTTTCTTCTGGTAGGCCA 59.558 45.455 5.01 0.00 43.73 5.36
2040 2408 3.141767 AGTGTTTTCTTCTGGTAGGCC 57.858 47.619 0.00 0.00 0.00 5.19
2041 2409 3.678548 CGTAGTGTTTTCTTCTGGTAGGC 59.321 47.826 0.00 0.00 0.00 3.93
2042 2410 4.243270 CCGTAGTGTTTTCTTCTGGTAGG 58.757 47.826 0.00 0.00 0.00 3.18
2043 2411 4.243270 CCCGTAGTGTTTTCTTCTGGTAG 58.757 47.826 0.00 0.00 0.00 3.18
2044 2412 3.642848 ACCCGTAGTGTTTTCTTCTGGTA 59.357 43.478 0.00 0.00 0.00 3.25
2045 2413 2.436911 ACCCGTAGTGTTTTCTTCTGGT 59.563 45.455 0.00 0.00 0.00 4.00
2046 2414 3.121738 ACCCGTAGTGTTTTCTTCTGG 57.878 47.619 0.00 0.00 0.00 3.86
2047 2415 4.151867 GCTTACCCGTAGTGTTTTCTTCTG 59.848 45.833 0.00 0.00 0.00 3.02
2048 2416 4.040095 AGCTTACCCGTAGTGTTTTCTTCT 59.960 41.667 0.00 0.00 0.00 2.85
2049 2417 4.313282 AGCTTACCCGTAGTGTTTTCTTC 58.687 43.478 0.00 0.00 0.00 2.87
2050 2418 4.347360 AGCTTACCCGTAGTGTTTTCTT 57.653 40.909 0.00 0.00 0.00 2.52
2051 2419 4.347360 AAGCTTACCCGTAGTGTTTTCT 57.653 40.909 0.00 0.00 0.00 2.52
2052 2420 5.390251 GCTAAAGCTTACCCGTAGTGTTTTC 60.390 44.000 0.00 0.00 38.21 2.29
2053 2421 4.453478 GCTAAAGCTTACCCGTAGTGTTTT 59.547 41.667 0.00 0.00 38.21 2.43
2054 2422 3.999001 GCTAAAGCTTACCCGTAGTGTTT 59.001 43.478 0.00 0.00 38.21 2.83
2055 2423 3.007182 TGCTAAAGCTTACCCGTAGTGTT 59.993 43.478 0.00 0.00 42.66 3.32
2056 2424 2.564062 TGCTAAAGCTTACCCGTAGTGT 59.436 45.455 0.00 0.00 42.66 3.55
2057 2425 2.928116 GTGCTAAAGCTTACCCGTAGTG 59.072 50.000 0.00 0.00 42.66 2.74
2058 2426 2.564062 TGTGCTAAAGCTTACCCGTAGT 59.436 45.455 0.00 0.00 42.66 2.73
2059 2427 3.119245 TCTGTGCTAAAGCTTACCCGTAG 60.119 47.826 0.00 0.00 42.66 3.51
2060 2428 2.827322 TCTGTGCTAAAGCTTACCCGTA 59.173 45.455 0.00 0.00 42.66 4.02
2061 2429 1.621814 TCTGTGCTAAAGCTTACCCGT 59.378 47.619 0.00 0.00 42.66 5.28
2062 2430 2.380084 TCTGTGCTAAAGCTTACCCG 57.620 50.000 0.00 0.00 42.66 5.28
2063 2431 4.143986 AGATCTGTGCTAAAGCTTACCC 57.856 45.455 0.00 0.00 42.66 3.69
2064 2432 7.611213 TTTAAGATCTGTGCTAAAGCTTACC 57.389 36.000 0.00 0.00 42.66 2.85
2065 2433 8.178313 CCTTTTAAGATCTGTGCTAAAGCTTAC 58.822 37.037 0.00 0.00 42.66 2.34
2066 2434 8.100791 TCCTTTTAAGATCTGTGCTAAAGCTTA 58.899 33.333 0.00 0.00 42.66 3.09
2067 2435 6.942576 TCCTTTTAAGATCTGTGCTAAAGCTT 59.057 34.615 0.00 0.00 42.66 3.74
2068 2436 6.476378 TCCTTTTAAGATCTGTGCTAAAGCT 58.524 36.000 0.00 0.00 42.66 3.74
2069 2437 6.743575 TCCTTTTAAGATCTGTGCTAAAGC 57.256 37.500 0.00 0.00 42.50 3.51
2070 2438 7.391833 ACCTTCCTTTTAAGATCTGTGCTAAAG 59.608 37.037 0.00 2.62 0.00 1.85
2071 2439 7.231467 ACCTTCCTTTTAAGATCTGTGCTAAA 58.769 34.615 0.00 0.00 0.00 1.85
2072 2440 6.779860 ACCTTCCTTTTAAGATCTGTGCTAA 58.220 36.000 0.00 0.00 0.00 3.09
2073 2441 6.374417 ACCTTCCTTTTAAGATCTGTGCTA 57.626 37.500 0.00 0.00 0.00 3.49
2074 2442 5.248380 ACCTTCCTTTTAAGATCTGTGCT 57.752 39.130 0.00 0.00 0.00 4.40
2075 2443 5.966742 AACCTTCCTTTTAAGATCTGTGC 57.033 39.130 0.00 0.00 0.00 4.57
2079 2447 9.839817 GCTCTTATAACCTTCCTTTTAAGATCT 57.160 33.333 0.00 0.00 0.00 2.75
2080 2448 9.614792 TGCTCTTATAACCTTCCTTTTAAGATC 57.385 33.333 0.00 0.00 0.00 2.75
2081 2449 9.975218 TTGCTCTTATAACCTTCCTTTTAAGAT 57.025 29.630 0.00 0.00 0.00 2.40
2082 2450 9.975218 ATTGCTCTTATAACCTTCCTTTTAAGA 57.025 29.630 0.00 0.00 0.00 2.10
2134 2505 3.914426 TCTCTCTTATTCACAAGGGGC 57.086 47.619 0.00 0.00 0.00 5.80
2142 2513 5.656859 TCTTTGGGTCGATCTCTCTTATTCA 59.343 40.000 0.00 0.00 0.00 2.57
2190 2561 6.348213 GCTATTTTCAACGGTTTTGCTCTAGA 60.348 38.462 0.00 0.00 0.00 2.43
2195 2566 4.314740 TGCTATTTTCAACGGTTTTGCT 57.685 36.364 0.00 0.00 0.00 3.91
2218 2589 3.801293 GCCCATCTTAAAGGATGCAATGC 60.801 47.826 0.00 0.00 41.04 3.56
2319 2690 4.907188 ATCGCAACATAAAAACGACGTA 57.093 36.364 0.00 0.00 35.33 3.57
2322 2693 5.503376 CAGTGTATCGCAACATAAAAACGAC 59.497 40.000 0.00 0.00 35.33 4.34
2343 2714 0.689055 TGTGAGATCAAGCAGGCAGT 59.311 50.000 0.00 0.00 0.00 4.40
2372 2743 1.525995 CCCAAGCCGTTGAGTGTGT 60.526 57.895 0.00 0.00 35.46 3.72
2383 2754 2.192187 GCATAGCTGAGCCCAAGCC 61.192 63.158 0.00 0.00 41.25 4.35
2434 2805 6.394809 TGATACGCCATGATTATATCGTTGT 58.605 36.000 0.00 0.00 0.00 3.32
2448 2819 1.069823 CAAGAGCTCCTGATACGCCAT 59.930 52.381 10.93 0.00 0.00 4.40
2451 2822 2.599216 GCAAGAGCTCCTGATACGC 58.401 57.895 16.69 2.45 37.91 4.42
2484 2863 7.414319 GGGCGTATGTGTAAGTGCTTTATTTTA 60.414 37.037 0.00 0.00 0.00 1.52
2491 2871 1.002659 TGGGCGTATGTGTAAGTGCTT 59.997 47.619 0.00 0.00 0.00 3.91
2493 2873 1.663695 ATGGGCGTATGTGTAAGTGC 58.336 50.000 0.00 0.00 0.00 4.40
2577 2960 1.605058 GAAGAGGAGTACTGGCGGCA 61.605 60.000 12.58 12.58 0.00 5.69
2614 2997 3.188159 ACGCACTAGAAAACCAAGTCA 57.812 42.857 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.