Multiple sequence alignment - TraesCS2D01G379700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G379700 chr2D 100.000 4641 0 0 1 4641 484325887 484330527 0.000000e+00 8571.0
1 TraesCS2D01G379700 chr2D 94.291 578 5 2 1905 2454 110051561 110050984 0.000000e+00 859.0
2 TraesCS2D01G379700 chr2D 93.902 574 6 3 1900 2445 282929995 282930567 0.000000e+00 839.0
3 TraesCS2D01G379700 chr2D 85.176 425 52 5 1001 1414 640333819 640334243 4.290000e-115 425.0
4 TraesCS2D01G379700 chr2D 88.780 205 22 1 1 205 138787732 138787935 2.770000e-62 250.0
5 TraesCS2D01G379700 chr2A 93.889 1440 63 10 2455 3886 628583493 628584915 0.000000e+00 2148.0
6 TraesCS2D01G379700 chr2A 91.910 754 39 10 699 1431 628582217 628582969 0.000000e+00 1035.0
7 TraesCS2D01G379700 chr2A 92.243 477 31 3 1432 1904 628583026 628583500 0.000000e+00 671.0
8 TraesCS2D01G379700 chr2A 85.913 575 17 13 1903 2445 249752177 249752719 5.250000e-154 555.0
9 TraesCS2D01G379700 chr2A 89.277 429 29 3 4228 4641 628585991 628586417 5.320000e-144 521.0
10 TraesCS2D01G379700 chr2A 87.016 439 45 5 1001 1428 115430361 115430798 6.980000e-133 484.0
11 TraesCS2D01G379700 chr2A 84.937 478 54 11 1432 1908 115430886 115431346 7.030000e-128 468.0
12 TraesCS2D01G379700 chr2A 95.062 243 8 3 3974 4215 628585140 628585379 3.390000e-101 379.0
13 TraesCS2D01G379700 chr2A 90.640 203 14 2 420 622 628579679 628579876 9.900000e-67 265.0
14 TraesCS2D01G379700 chr2B 94.658 1273 57 6 2702 3966 569018255 569019524 0.000000e+00 1964.0
15 TraesCS2D01G379700 chr2B 85.411 1083 105 29 318 1372 569016474 569017531 0.000000e+00 1075.0
16 TraesCS2D01G379700 chr2B 94.770 478 18 5 1432 1904 569017630 569018105 0.000000e+00 737.0
17 TraesCS2D01G379700 chr2B 84.270 445 31 10 4221 4640 569020596 569021026 9.360000e-107 398.0
18 TraesCS2D01G379700 chr2B 91.279 172 4 1 2455 2626 569018098 569018258 1.680000e-54 224.0
19 TraesCS2D01G379700 chr2B 88.596 114 10 3 3974 4086 569020079 569020190 8.100000e-28 135.0
20 TraesCS2D01G379700 chr1A 93.728 574 13 9 1903 2454 381308916 381309488 0.000000e+00 839.0
21 TraesCS2D01G379700 chr1A 88.626 211 9 1 2237 2432 434874971 434874761 4.640000e-60 243.0
22 TraesCS2D01G379700 chr1A 83.333 90 11 2 2603 2690 572071864 572071777 3.850000e-11 80.5
23 TraesCS2D01G379700 chr1D 92.334 587 8 3 1905 2454 42818925 42819511 0.000000e+00 800.0
24 TraesCS2D01G379700 chr1D 79.577 142 21 7 177 317 233889855 233889989 1.370000e-15 95.3
25 TraesCS2D01G379700 chr6D 91.156 588 15 6 1904 2454 50778102 50778689 0.000000e+00 763.0
26 TraesCS2D01G379700 chr6D 78.947 342 55 13 3172 3499 296194582 296194244 2.810000e-52 217.0
27 TraesCS2D01G379700 chrUn 90.411 584 14 8 1903 2445 130475345 130474763 0.000000e+00 730.0
28 TraesCS2D01G379700 chrUn 82.105 95 13 2 2598 2690 316201949 316201857 1.380000e-10 78.7
29 TraesCS2D01G379700 chr7D 88.494 591 10 16 1895 2429 109309751 109310339 0.000000e+00 662.0
30 TraesCS2D01G379700 chr7D 87.045 440 44 6 1001 1428 511056893 511057331 6.980000e-133 484.0
31 TraesCS2D01G379700 chr7D 85.356 478 53 13 1432 1908 580167036 580166575 3.250000e-131 479.0
32 TraesCS2D01G379700 chr7D 85.386 479 49 17 1432 1908 511057419 511057878 1.170000e-130 477.0
33 TraesCS2D01G379700 chr7D 86.738 279 27 3 1166 1434 580167395 580167117 7.550000e-78 302.0
34 TraesCS2D01G379700 chr7D 84.052 232 34 3 55 284 26001239 26001469 2.170000e-53 220.0
35 TraesCS2D01G379700 chr4B 87.398 611 16 12 1905 2455 32918670 32919279 0.000000e+00 645.0
36 TraesCS2D01G379700 chr4B 85.986 578 17 12 1900 2445 206791190 206791735 1.130000e-155 560.0
37 TraesCS2D01G379700 chr1B 86.598 582 15 17 1905 2454 685284398 685284948 6.690000e-163 584.0
38 TraesCS2D01G379700 chr1B 85.864 573 17 12 1905 2445 31897268 31897808 6.790000e-153 551.0
39 TraesCS2D01G379700 chr1B 85.864 573 17 12 1905 2445 84873223 84872683 6.790000e-153 551.0
40 TraesCS2D01G379700 chr1B 87.294 425 37 7 1001 1409 93950281 93950704 1.950000e-128 470.0
41 TraesCS2D01G379700 chr1B 84.760 479 53 13 1432 1908 93950811 93951271 3.270000e-126 462.0
42 TraesCS2D01G379700 chr7B 86.111 576 16 12 1902 2445 394816286 394815743 3.140000e-156 562.0
43 TraesCS2D01G379700 chr7B 81.818 99 12 5 2603 2699 695952674 695952580 1.380000e-10 78.7
44 TraesCS2D01G379700 chr3D 92.086 417 5 2 1905 2293 236638722 236639138 3.140000e-156 562.0
45 TraesCS2D01G379700 chr3D 87.676 284 33 2 1 283 499626572 499626854 3.460000e-86 329.0
46 TraesCS2D01G379700 chr3D 85.714 133 17 2 189 320 320632087 320631956 6.260000e-29 139.0
47 TraesCS2D01G379700 chr3D 82.500 120 18 3 204 321 84106517 84106635 8.220000e-18 102.0
48 TraesCS2D01G379700 chr3D 81.000 100 14 3 2603 2700 611167342 611167246 1.790000e-09 75.0
49 TraesCS2D01G379700 chr3A 85.913 575 16 14 1903 2445 340281612 340282153 1.890000e-153 553.0
50 TraesCS2D01G379700 chr3A 85.517 580 21 19 1897 2445 204823219 204823766 8.780000e-152 547.0
51 TraesCS2D01G379700 chr4A 86.990 515 10 16 1968 2454 425993233 425992748 1.140000e-145 527.0
52 TraesCS2D01G379700 chr4A 97.143 35 0 1 1338 1371 634225328 634225294 1.800000e-04 58.4
53 TraesCS2D01G379700 chr7A 86.788 439 46 5 1001 1428 611767719 611768156 3.250000e-131 479.0
54 TraesCS2D01G379700 chr7A 84.728 478 55 11 1432 1908 611768244 611768704 3.270000e-126 462.0
55 TraesCS2D01G379700 chr7A 81.529 157 28 1 13 169 146911645 146911490 1.360000e-25 128.0
56 TraesCS2D01G379700 chr7A 81.690 142 24 2 182 321 441572096 441571955 2.930000e-22 117.0
57 TraesCS2D01G379700 chr7A 85.556 90 9 3 2604 2691 352863935 352863848 1.780000e-14 91.6
58 TraesCS2D01G379700 chr6B 86.547 446 47 6 1001 1434 182642797 182642353 3.250000e-131 479.0
59 TraesCS2D01G379700 chr6B 85.146 478 52 12 1432 1908 182642271 182641812 5.440000e-129 472.0
60 TraesCS2D01G379700 chr6B 91.176 136 12 0 3172 3307 461334125 461334260 7.930000e-43 185.0
61 TraesCS2D01G379700 chr3B 84.937 478 53 12 1432 1908 71455374 71454915 2.530000e-127 466.0
62 TraesCS2D01G379700 chr3B 85.169 445 53 6 1001 1434 71455898 71455456 1.180000e-120 444.0
63 TraesCS2D01G379700 chr3B 94.872 39 1 1 1334 1371 754160817 754160779 5.010000e-05 60.2
64 TraesCS2D01G379700 chr4D 89.862 217 20 2 104 318 13188825 13189041 1.270000e-70 278.0
65 TraesCS2D01G379700 chr4D 81.720 186 33 1 16 200 477528637 477528822 2.240000e-33 154.0
66 TraesCS2D01G379700 chr4D 84.211 95 11 4 2597 2689 16914475 16914567 6.400000e-14 89.8
67 TraesCS2D01G379700 chr6A 78.886 341 57 11 3172 3499 421754023 421753685 2.810000e-52 217.0
68 TraesCS2D01G379700 chr6A 84.828 145 20 2 182 324 4869894 4869750 1.350000e-30 145.0
69 TraesCS2D01G379700 chr5B 81.250 176 27 6 149 321 441524154 441523982 2.250000e-28 137.0
70 TraesCS2D01G379700 chr5A 85.556 90 9 3 2603 2690 376541919 376542006 1.780000e-14 91.6
71 TraesCS2D01G379700 chr5A 85.393 89 9 3 2604 2690 46707091 46707005 6.400000e-14 89.8
72 TraesCS2D01G379700 chr5A 94.872 39 1 1 1334 1371 639609706 639609744 5.010000e-05 60.2
73 TraesCS2D01G379700 chr5A 92.308 39 2 1 1334 1371 547893399 547893361 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G379700 chr2D 484325887 484330527 4640 False 8571.0 8571 100.000000 1 4641 1 chr2D.!!$F3 4640
1 TraesCS2D01G379700 chr2D 110050984 110051561 577 True 859.0 859 94.291000 1905 2454 1 chr2D.!!$R1 549
2 TraesCS2D01G379700 chr2D 282929995 282930567 572 False 839.0 839 93.902000 1900 2445 1 chr2D.!!$F2 545
3 TraesCS2D01G379700 chr2A 628579679 628586417 6738 False 836.5 2148 92.170167 420 4641 6 chr2A.!!$F3 4221
4 TraesCS2D01G379700 chr2A 249752177 249752719 542 False 555.0 555 85.913000 1903 2445 1 chr2A.!!$F1 542
5 TraesCS2D01G379700 chr2A 115430361 115431346 985 False 476.0 484 85.976500 1001 1908 2 chr2A.!!$F2 907
6 TraesCS2D01G379700 chr2B 569016474 569021026 4552 False 755.5 1964 89.830667 318 4640 6 chr2B.!!$F1 4322
7 TraesCS2D01G379700 chr1A 381308916 381309488 572 False 839.0 839 93.728000 1903 2454 1 chr1A.!!$F1 551
8 TraesCS2D01G379700 chr1D 42818925 42819511 586 False 800.0 800 92.334000 1905 2454 1 chr1D.!!$F1 549
9 TraesCS2D01G379700 chr6D 50778102 50778689 587 False 763.0 763 91.156000 1904 2454 1 chr6D.!!$F1 550
10 TraesCS2D01G379700 chrUn 130474763 130475345 582 True 730.0 730 90.411000 1903 2445 1 chrUn.!!$R1 542
11 TraesCS2D01G379700 chr7D 109309751 109310339 588 False 662.0 662 88.494000 1895 2429 1 chr7D.!!$F2 534
12 TraesCS2D01G379700 chr7D 511056893 511057878 985 False 480.5 484 86.215500 1001 1908 2 chr7D.!!$F3 907
13 TraesCS2D01G379700 chr7D 580166575 580167395 820 True 390.5 479 86.047000 1166 1908 2 chr7D.!!$R1 742
14 TraesCS2D01G379700 chr4B 32918670 32919279 609 False 645.0 645 87.398000 1905 2455 1 chr4B.!!$F1 550
15 TraesCS2D01G379700 chr4B 206791190 206791735 545 False 560.0 560 85.986000 1900 2445 1 chr4B.!!$F2 545
16 TraesCS2D01G379700 chr1B 685284398 685284948 550 False 584.0 584 86.598000 1905 2454 1 chr1B.!!$F2 549
17 TraesCS2D01G379700 chr1B 31897268 31897808 540 False 551.0 551 85.864000 1905 2445 1 chr1B.!!$F1 540
18 TraesCS2D01G379700 chr1B 84872683 84873223 540 True 551.0 551 85.864000 1905 2445 1 chr1B.!!$R1 540
19 TraesCS2D01G379700 chr1B 93950281 93951271 990 False 466.0 470 86.027000 1001 1908 2 chr1B.!!$F3 907
20 TraesCS2D01G379700 chr7B 394815743 394816286 543 True 562.0 562 86.111000 1902 2445 1 chr7B.!!$R1 543
21 TraesCS2D01G379700 chr3A 340281612 340282153 541 False 553.0 553 85.913000 1903 2445 1 chr3A.!!$F2 542
22 TraesCS2D01G379700 chr3A 204823219 204823766 547 False 547.0 547 85.517000 1897 2445 1 chr3A.!!$F1 548
23 TraesCS2D01G379700 chr7A 611767719 611768704 985 False 470.5 479 85.758000 1001 1908 2 chr7A.!!$F1 907
24 TraesCS2D01G379700 chr6B 182641812 182642797 985 True 475.5 479 85.846500 1001 1908 2 chr6B.!!$R1 907
25 TraesCS2D01G379700 chr3B 71454915 71455898 983 True 455.0 466 85.053000 1001 1908 2 chr3B.!!$R2 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 194 0.038618 GTGAATGTTTTCCACGCCCC 60.039 55.0 0.00 0.00 0.00 5.80 F
224 225 0.109781 TACAGGTCCGACGCGTTTAC 60.110 55.0 15.53 12.11 0.00 2.01 F
232 233 0.429736 CGACGCGTTTACAGTGTCTG 59.570 55.0 15.53 0.00 44.35 3.51 F
1122 3431 0.465460 TGCAGCCGTTCAAGAGGTTT 60.465 50.0 0.00 0.00 0.00 3.27 F
2245 4740 0.694771 TTCTCCCTCACAGCAGCAAT 59.305 50.0 0.00 0.00 0.00 3.56 F
3425 6000 0.034767 CTCATGGGGCAAGAAGCTGA 60.035 55.0 0.00 0.00 44.79 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1259 3573 0.536687 CCGTATAGGCTCCTCCGTCA 60.537 60.000 0.00 0.0 40.77 4.35 R
1261 3575 0.536915 GTCCGTATAGGCTCCTCCGT 60.537 60.000 0.00 0.0 40.77 4.69 R
1540 3961 2.065993 TAACTGCGCTGACAAGAGTC 57.934 50.000 21.92 0.0 45.19 3.36 R
2939 5507 1.000506 CATCAAGCATAATGGGCAGGC 59.999 52.381 0.00 0.0 0.00 4.85 R
3445 6020 0.319469 TGTCGAAGTCATTGAGCGCA 60.319 50.000 11.47 0.0 0.00 6.09 R
4575 8668 0.250513 GACCTTCGCTGGTTGGATCT 59.749 55.000 0.91 0.0 41.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.917760 GGGACGAGCGGATGGGAG 61.918 72.222 0.00 0.00 0.00 4.30
69 70 4.593864 GGACGAGCGGATGGGAGC 62.594 72.222 0.00 0.00 0.00 4.70
70 71 4.933064 GACGAGCGGATGGGAGCG 62.933 72.222 0.00 0.00 38.61 5.03
72 73 4.637489 CGAGCGGATGGGAGCGAG 62.637 72.222 0.00 0.00 38.61 5.03
73 74 4.959596 GAGCGGATGGGAGCGAGC 62.960 72.222 0.00 0.00 38.61 5.03
77 78 4.899239 GGATGGGAGCGAGCCGTG 62.899 72.222 0.00 0.00 0.00 4.94
78 79 3.838271 GATGGGAGCGAGCCGTGA 61.838 66.667 0.00 0.00 0.00 4.35
79 80 3.371097 GATGGGAGCGAGCCGTGAA 62.371 63.158 0.00 0.00 0.00 3.18
80 81 3.376935 ATGGGAGCGAGCCGTGAAG 62.377 63.158 0.00 0.00 0.00 3.02
81 82 4.821589 GGGAGCGAGCCGTGAAGG 62.822 72.222 0.00 0.00 44.97 3.46
82 83 4.070552 GGAGCGAGCCGTGAAGGT 62.071 66.667 0.00 0.00 43.70 3.50
83 84 2.048127 GAGCGAGCCGTGAAGGTT 60.048 61.111 0.00 0.00 43.70 3.50
84 85 2.048127 AGCGAGCCGTGAAGGTTC 60.048 61.111 0.00 0.00 45.57 3.62
85 86 3.119096 GCGAGCCGTGAAGGTTCC 61.119 66.667 0.00 0.00 46.21 3.62
86 87 2.809601 CGAGCCGTGAAGGTTCCG 60.810 66.667 0.00 0.00 46.21 4.30
87 88 2.654877 GAGCCGTGAAGGTTCCGA 59.345 61.111 0.00 0.00 43.57 4.55
88 89 1.218316 GAGCCGTGAAGGTTCCGAT 59.782 57.895 0.00 0.00 43.57 4.18
89 90 1.079127 AGCCGTGAAGGTTCCGATG 60.079 57.895 0.00 0.00 43.70 3.84
90 91 2.106683 GCCGTGAAGGTTCCGATGG 61.107 63.158 0.00 0.00 43.70 3.51
91 92 1.295423 CCGTGAAGGTTCCGATGGT 59.705 57.895 0.00 0.00 34.51 3.55
92 93 0.533491 CCGTGAAGGTTCCGATGGTA 59.467 55.000 0.00 0.00 34.51 3.25
93 94 1.470979 CCGTGAAGGTTCCGATGGTAG 60.471 57.143 0.00 0.00 34.51 3.18
94 95 1.203994 CGTGAAGGTTCCGATGGTAGT 59.796 52.381 0.00 0.00 0.00 2.73
95 96 2.353406 CGTGAAGGTTCCGATGGTAGTT 60.353 50.000 0.00 0.00 0.00 2.24
96 97 3.119388 CGTGAAGGTTCCGATGGTAGTTA 60.119 47.826 0.00 0.00 0.00 2.24
97 98 4.430908 GTGAAGGTTCCGATGGTAGTTAG 58.569 47.826 0.00 0.00 0.00 2.34
98 99 4.159135 GTGAAGGTTCCGATGGTAGTTAGA 59.841 45.833 0.00 0.00 0.00 2.10
99 100 4.960469 TGAAGGTTCCGATGGTAGTTAGAT 59.040 41.667 0.00 0.00 0.00 1.98
100 101 5.424252 TGAAGGTTCCGATGGTAGTTAGATT 59.576 40.000 0.00 0.00 0.00 2.40
101 102 5.532664 AGGTTCCGATGGTAGTTAGATTC 57.467 43.478 0.00 0.00 0.00 2.52
102 103 4.344390 AGGTTCCGATGGTAGTTAGATTCC 59.656 45.833 0.00 0.00 0.00 3.01
103 104 4.502777 GGTTCCGATGGTAGTTAGATTCCC 60.503 50.000 0.00 0.00 0.00 3.97
104 105 2.889045 TCCGATGGTAGTTAGATTCCCG 59.111 50.000 0.00 0.00 0.00 5.14
105 106 2.609737 CCGATGGTAGTTAGATTCCCGC 60.610 54.545 0.00 0.00 0.00 6.13
106 107 2.609737 CGATGGTAGTTAGATTCCCGCC 60.610 54.545 0.00 0.00 0.00 6.13
107 108 1.868713 TGGTAGTTAGATTCCCGCCA 58.131 50.000 0.00 0.00 0.00 5.69
108 109 2.189676 TGGTAGTTAGATTCCCGCCAA 58.810 47.619 0.00 0.00 0.00 4.52
109 110 2.093341 TGGTAGTTAGATTCCCGCCAAC 60.093 50.000 0.00 0.00 0.00 3.77
110 111 2.199236 GTAGTTAGATTCCCGCCAACG 58.801 52.381 0.00 0.00 39.67 4.10
120 121 2.202492 CGCCAACGGTCTCTCGAG 60.202 66.667 5.93 5.93 34.97 4.04
121 122 2.963371 GCCAACGGTCTCTCGAGT 59.037 61.111 13.13 0.00 0.00 4.18
122 123 1.642037 CGCCAACGGTCTCTCGAGTA 61.642 60.000 13.13 0.00 34.97 2.59
123 124 0.739561 GCCAACGGTCTCTCGAGTAT 59.260 55.000 13.13 0.00 0.00 2.12
124 125 1.945394 GCCAACGGTCTCTCGAGTATA 59.055 52.381 13.13 0.00 0.00 1.47
125 126 2.286891 GCCAACGGTCTCTCGAGTATAC 60.287 54.545 13.13 8.94 0.00 1.47
126 127 2.941064 CCAACGGTCTCTCGAGTATACA 59.059 50.000 13.13 0.00 0.00 2.29
127 128 3.002451 CCAACGGTCTCTCGAGTATACAG 59.998 52.174 13.13 11.76 0.00 2.74
128 129 2.836262 ACGGTCTCTCGAGTATACAGG 58.164 52.381 13.13 7.57 0.00 4.00
129 130 2.144730 CGGTCTCTCGAGTATACAGGG 58.855 57.143 13.13 0.00 0.00 4.45
130 131 1.881324 GGTCTCTCGAGTATACAGGGC 59.119 57.143 13.13 0.00 0.00 5.19
131 132 1.881324 GTCTCTCGAGTATACAGGGCC 59.119 57.143 13.13 0.00 0.00 5.80
132 133 0.875728 CTCTCGAGTATACAGGGCCG 59.124 60.000 13.13 0.00 0.00 6.13
133 134 1.170919 TCTCGAGTATACAGGGCCGC 61.171 60.000 13.13 0.00 0.00 6.53
134 135 1.152819 TCGAGTATACAGGGCCGCT 60.153 57.895 5.50 0.00 0.00 5.52
135 136 0.754217 TCGAGTATACAGGGCCGCTT 60.754 55.000 5.50 0.00 0.00 4.68
136 137 0.104304 CGAGTATACAGGGCCGCTTT 59.896 55.000 5.50 0.00 0.00 3.51
137 138 1.583054 GAGTATACAGGGCCGCTTTG 58.417 55.000 5.50 0.00 0.00 2.77
138 139 0.180406 AGTATACAGGGCCGCTTTGG 59.820 55.000 5.50 0.00 42.50 3.28
139 140 0.107361 GTATACAGGGCCGCTTTGGT 60.107 55.000 0.00 0.00 41.21 3.67
140 141 0.621609 TATACAGGGCCGCTTTGGTT 59.378 50.000 0.00 0.00 41.21 3.67
141 142 0.251608 ATACAGGGCCGCTTTGGTTT 60.252 50.000 0.00 0.00 41.21 3.27
142 143 1.175983 TACAGGGCCGCTTTGGTTTG 61.176 55.000 0.00 0.00 41.21 2.93
143 144 2.917227 AGGGCCGCTTTGGTTTGG 60.917 61.111 0.00 0.00 41.21 3.28
144 145 4.680237 GGGCCGCTTTGGTTTGGC 62.680 66.667 0.00 0.00 46.82 4.52
145 146 3.615709 GGCCGCTTTGGTTTGGCT 61.616 61.111 1.77 0.00 46.72 4.75
146 147 2.049156 GCCGCTTTGGTTTGGCTC 60.049 61.111 0.00 0.00 44.16 4.70
147 148 2.650778 CCGCTTTGGTTTGGCTCC 59.349 61.111 0.00 0.00 0.00 4.70
148 149 2.255252 CGCTTTGGTTTGGCTCCG 59.745 61.111 0.00 0.00 0.00 4.63
149 150 2.258013 CGCTTTGGTTTGGCTCCGA 61.258 57.895 0.00 0.00 0.00 4.55
150 151 1.791103 CGCTTTGGTTTGGCTCCGAA 61.791 55.000 0.00 0.00 0.00 4.30
151 152 0.387565 GCTTTGGTTTGGCTCCGAAA 59.612 50.000 0.00 0.00 0.00 3.46
152 153 1.000843 GCTTTGGTTTGGCTCCGAAAT 59.999 47.619 0.00 0.00 0.00 2.17
153 154 2.926586 GCTTTGGTTTGGCTCCGAAATC 60.927 50.000 0.00 0.00 0.00 2.17
154 155 1.253100 TTGGTTTGGCTCCGAAATCC 58.747 50.000 0.00 0.00 0.00 3.01
155 156 0.404040 TGGTTTGGCTCCGAAATCCT 59.596 50.000 0.00 0.00 0.00 3.24
156 157 1.203001 TGGTTTGGCTCCGAAATCCTT 60.203 47.619 0.00 0.00 0.00 3.36
157 158 2.040545 TGGTTTGGCTCCGAAATCCTTA 59.959 45.455 0.00 0.00 0.00 2.69
158 159 3.288092 GGTTTGGCTCCGAAATCCTTAT 58.712 45.455 0.00 0.00 0.00 1.73
159 160 3.699538 GGTTTGGCTCCGAAATCCTTATT 59.300 43.478 0.00 0.00 0.00 1.40
160 161 4.159693 GGTTTGGCTCCGAAATCCTTATTT 59.840 41.667 0.00 0.00 38.03 1.40
161 162 5.337250 GGTTTGGCTCCGAAATCCTTATTTT 60.337 40.000 0.00 0.00 35.41 1.82
162 163 5.576447 TTGGCTCCGAAATCCTTATTTTC 57.424 39.130 0.00 0.00 35.41 2.29
163 164 4.594970 TGGCTCCGAAATCCTTATTTTCA 58.405 39.130 0.00 0.00 35.41 2.69
164 165 4.398044 TGGCTCCGAAATCCTTATTTTCAC 59.602 41.667 0.00 0.00 35.41 3.18
165 166 4.398044 GGCTCCGAAATCCTTATTTTCACA 59.602 41.667 0.00 0.00 35.41 3.58
166 167 5.449177 GGCTCCGAAATCCTTATTTTCACAG 60.449 44.000 0.00 0.00 35.41 3.66
167 168 5.123979 GCTCCGAAATCCTTATTTTCACAGT 59.876 40.000 0.00 0.00 35.41 3.55
168 169 6.349363 GCTCCGAAATCCTTATTTTCACAGTT 60.349 38.462 0.00 0.00 35.41 3.16
169 170 7.519032 TCCGAAATCCTTATTTTCACAGTTT 57.481 32.000 0.00 0.00 35.41 2.66
170 171 7.590279 TCCGAAATCCTTATTTTCACAGTTTC 58.410 34.615 0.00 0.00 35.41 2.78
171 172 7.229707 TCCGAAATCCTTATTTTCACAGTTTCA 59.770 33.333 0.00 0.00 35.41 2.69
172 173 7.865385 CCGAAATCCTTATTTTCACAGTTTCAA 59.135 33.333 0.00 0.00 35.41 2.69
173 174 8.690840 CGAAATCCTTATTTTCACAGTTTCAAC 58.309 33.333 0.00 0.00 35.41 3.18
174 175 8.574196 AAATCCTTATTTTCACAGTTTCAACG 57.426 30.769 0.00 0.00 30.98 4.10
175 176 6.687081 TCCTTATTTTCACAGTTTCAACGT 57.313 33.333 0.00 0.00 0.00 3.99
176 177 6.491394 TCCTTATTTTCACAGTTTCAACGTG 58.509 36.000 0.00 7.78 35.94 4.49
177 178 6.316640 TCCTTATTTTCACAGTTTCAACGTGA 59.683 34.615 11.04 11.04 39.12 4.35
178 179 6.970043 CCTTATTTTCACAGTTTCAACGTGAA 59.030 34.615 18.04 18.04 43.49 3.18
179 180 7.647715 CCTTATTTTCACAGTTTCAACGTGAAT 59.352 33.333 20.49 13.99 43.99 2.57
180 181 6.810888 ATTTTCACAGTTTCAACGTGAATG 57.189 33.333 20.49 0.00 43.99 2.67
181 182 4.955925 TTCACAGTTTCAACGTGAATGT 57.044 36.364 18.04 0.00 42.04 2.71
182 183 4.955925 TCACAGTTTCAACGTGAATGTT 57.044 36.364 12.09 0.00 38.49 2.71
183 184 5.303747 TCACAGTTTCAACGTGAATGTTT 57.696 34.783 12.09 0.00 38.49 2.83
184 185 5.704888 TCACAGTTTCAACGTGAATGTTTT 58.295 33.333 12.09 0.00 38.49 2.43
185 186 5.797934 TCACAGTTTCAACGTGAATGTTTTC 59.202 36.000 12.09 0.00 38.49 2.29
186 187 5.004345 CACAGTTTCAACGTGAATGTTTTCC 59.996 40.000 0.00 0.00 36.11 3.13
187 188 5.098893 CAGTTTCAACGTGAATGTTTTCCA 58.901 37.500 0.00 0.00 36.11 3.53
188 189 5.004345 CAGTTTCAACGTGAATGTTTTCCAC 59.996 40.000 0.00 0.00 36.11 4.02
189 190 3.326733 TCAACGTGAATGTTTTCCACG 57.673 42.857 11.81 11.81 39.78 4.94
190 191 1.778591 CAACGTGAATGTTTTCCACGC 59.221 47.619 13.07 0.00 38.64 5.34
191 192 0.309612 ACGTGAATGTTTTCCACGCC 59.690 50.000 13.07 0.00 38.64 5.68
192 193 0.386731 CGTGAATGTTTTCCACGCCC 60.387 55.000 0.00 0.00 33.22 6.13
193 194 0.038618 GTGAATGTTTTCCACGCCCC 60.039 55.000 0.00 0.00 0.00 5.80
194 195 0.178975 TGAATGTTTTCCACGCCCCT 60.179 50.000 0.00 0.00 0.00 4.79
195 196 0.966179 GAATGTTTTCCACGCCCCTT 59.034 50.000 0.00 0.00 0.00 3.95
196 197 2.164338 GAATGTTTTCCACGCCCCTTA 58.836 47.619 0.00 0.00 0.00 2.69
197 198 2.296073 ATGTTTTCCACGCCCCTTAA 57.704 45.000 0.00 0.00 0.00 1.85
198 199 2.068834 TGTTTTCCACGCCCCTTAAA 57.931 45.000 0.00 0.00 0.00 1.52
199 200 2.385803 TGTTTTCCACGCCCCTTAAAA 58.614 42.857 0.00 0.00 0.00 1.52
200 201 2.101082 TGTTTTCCACGCCCCTTAAAAC 59.899 45.455 0.00 0.00 39.38 2.43
201 202 2.363038 GTTTTCCACGCCCCTTAAAACT 59.637 45.455 0.00 0.00 37.18 2.66
202 203 2.368311 TTCCACGCCCCTTAAAACTT 57.632 45.000 0.00 0.00 0.00 2.66
203 204 2.368311 TCCACGCCCCTTAAAACTTT 57.632 45.000 0.00 0.00 0.00 2.66
204 205 2.668625 TCCACGCCCCTTAAAACTTTT 58.331 42.857 0.00 0.00 0.00 2.27
205 206 3.032459 TCCACGCCCCTTAAAACTTTTT 58.968 40.909 0.00 0.00 0.00 1.94
206 207 4.213513 TCCACGCCCCTTAAAACTTTTTA 58.786 39.130 0.00 0.00 0.00 1.52
207 208 4.037803 TCCACGCCCCTTAAAACTTTTTAC 59.962 41.667 0.00 0.00 32.77 2.01
208 209 4.202131 CCACGCCCCTTAAAACTTTTTACA 60.202 41.667 0.00 0.00 32.77 2.41
209 210 4.979815 CACGCCCCTTAAAACTTTTTACAG 59.020 41.667 0.00 0.00 32.77 2.74
210 211 4.038282 ACGCCCCTTAAAACTTTTTACAGG 59.962 41.667 11.73 11.73 34.42 4.00
211 212 4.038282 CGCCCCTTAAAACTTTTTACAGGT 59.962 41.667 14.72 0.00 33.70 4.00
212 213 5.535333 GCCCCTTAAAACTTTTTACAGGTC 58.465 41.667 14.72 7.95 33.70 3.85
213 214 5.510179 GCCCCTTAAAACTTTTTACAGGTCC 60.510 44.000 14.72 0.00 33.70 4.46
214 215 5.278610 CCCCTTAAAACTTTTTACAGGTCCG 60.279 44.000 14.72 0.00 33.70 4.79
215 216 5.532032 CCCTTAAAACTTTTTACAGGTCCGA 59.468 40.000 14.72 0.00 33.70 4.55
216 217 6.432936 CCTTAAAACTTTTTACAGGTCCGAC 58.567 40.000 11.05 0.00 32.77 4.79
217 218 4.541085 AAAACTTTTTACAGGTCCGACG 57.459 40.909 0.00 0.00 0.00 5.12
218 219 1.505425 ACTTTTTACAGGTCCGACGC 58.495 50.000 0.00 0.00 0.00 5.19
219 220 0.437295 CTTTTTACAGGTCCGACGCG 59.563 55.000 3.53 3.53 0.00 6.01
220 221 0.249405 TTTTTACAGGTCCGACGCGT 60.249 50.000 13.85 13.85 0.00 6.01
221 222 0.249405 TTTTACAGGTCCGACGCGTT 60.249 50.000 15.53 0.00 0.00 4.84
222 223 0.249405 TTTACAGGTCCGACGCGTTT 60.249 50.000 15.53 0.00 0.00 3.60
223 224 0.595588 TTACAGGTCCGACGCGTTTA 59.404 50.000 15.53 0.00 0.00 2.01
224 225 0.109781 TACAGGTCCGACGCGTTTAC 60.110 55.000 15.53 12.11 0.00 2.01
225 226 1.372004 CAGGTCCGACGCGTTTACA 60.372 57.895 15.53 0.00 0.00 2.41
226 227 1.080974 AGGTCCGACGCGTTTACAG 60.081 57.895 15.53 2.80 0.00 2.74
227 228 1.372128 GGTCCGACGCGTTTACAGT 60.372 57.895 15.53 0.00 0.00 3.55
228 229 1.611592 GGTCCGACGCGTTTACAGTG 61.612 60.000 15.53 0.00 0.00 3.66
229 230 0.936297 GTCCGACGCGTTTACAGTGT 60.936 55.000 15.53 0.00 34.74 3.55
230 231 0.661187 TCCGACGCGTTTACAGTGTC 60.661 55.000 15.53 0.00 43.43 3.67
231 232 0.662374 CCGACGCGTTTACAGTGTCT 60.662 55.000 15.53 0.00 44.35 3.41
232 233 0.429736 CGACGCGTTTACAGTGTCTG 59.570 55.000 15.53 0.00 44.35 3.51
233 234 1.762419 GACGCGTTTACAGTGTCTGA 58.238 50.000 15.53 0.00 43.50 3.27
234 235 2.325761 GACGCGTTTACAGTGTCTGAT 58.674 47.619 15.53 0.00 43.50 2.90
235 236 2.325761 ACGCGTTTACAGTGTCTGATC 58.674 47.619 5.58 0.00 35.18 2.92
236 237 1.317611 CGCGTTTACAGTGTCTGATCG 59.682 52.381 0.00 0.57 35.18 3.69
237 238 1.654105 GCGTTTACAGTGTCTGATCGG 59.346 52.381 0.00 0.00 35.18 4.18
238 239 2.259618 CGTTTACAGTGTCTGATCGGG 58.740 52.381 0.00 0.00 35.18 5.14
239 240 2.352421 CGTTTACAGTGTCTGATCGGGT 60.352 50.000 0.00 0.00 35.18 5.28
240 241 2.993899 GTTTACAGTGTCTGATCGGGTG 59.006 50.000 0.00 0.00 35.18 4.61
241 242 2.209690 TACAGTGTCTGATCGGGTGA 57.790 50.000 0.00 0.00 35.18 4.02
242 243 0.603569 ACAGTGTCTGATCGGGTGAC 59.396 55.000 0.62 1.72 35.18 3.67
243 244 0.891373 CAGTGTCTGATCGGGTGACT 59.109 55.000 0.62 0.00 32.44 3.41
244 245 1.273606 CAGTGTCTGATCGGGTGACTT 59.726 52.381 0.62 0.00 32.44 3.01
245 246 1.971357 AGTGTCTGATCGGGTGACTTT 59.029 47.619 0.62 0.00 0.00 2.66
246 247 2.368875 AGTGTCTGATCGGGTGACTTTT 59.631 45.455 0.62 0.00 0.00 2.27
247 248 3.139077 GTGTCTGATCGGGTGACTTTTT 58.861 45.455 0.62 0.00 0.00 1.94
269 270 1.342473 CGCGGACCGTATTTTGACG 59.658 57.895 16.73 3.71 42.55 4.35
281 282 6.997575 CGTATTTTGACGGTTATTTTACGG 57.002 37.500 0.00 0.00 39.19 4.02
282 283 5.958949 CGTATTTTGACGGTTATTTTACGGG 59.041 40.000 0.00 0.00 39.19 5.28
283 284 5.963176 ATTTTGACGGTTATTTTACGGGT 57.037 34.783 0.00 0.00 0.00 5.28
284 285 5.764487 TTTTGACGGTTATTTTACGGGTT 57.236 34.783 0.00 0.00 0.00 4.11
285 286 4.745837 TTGACGGTTATTTTACGGGTTG 57.254 40.909 0.00 0.00 0.00 3.77
286 287 3.072944 TGACGGTTATTTTACGGGTTGG 58.927 45.455 0.00 0.00 0.00 3.77
287 288 2.419673 GACGGTTATTTTACGGGTTGGG 59.580 50.000 0.00 0.00 0.00 4.12
288 289 2.039613 ACGGTTATTTTACGGGTTGGGA 59.960 45.455 0.00 0.00 0.00 4.37
289 290 3.281158 CGGTTATTTTACGGGTTGGGAT 58.719 45.455 0.00 0.00 0.00 3.85
290 291 4.080638 ACGGTTATTTTACGGGTTGGGATA 60.081 41.667 0.00 0.00 0.00 2.59
291 292 5.065235 CGGTTATTTTACGGGTTGGGATAT 58.935 41.667 0.00 0.00 0.00 1.63
292 293 5.532032 CGGTTATTTTACGGGTTGGGATATT 59.468 40.000 0.00 0.00 0.00 1.28
293 294 6.709846 CGGTTATTTTACGGGTTGGGATATTA 59.290 38.462 0.00 0.00 0.00 0.98
294 295 7.391275 CGGTTATTTTACGGGTTGGGATATTAT 59.609 37.037 0.00 0.00 0.00 1.28
295 296 9.737844 GGTTATTTTACGGGTTGGGATATTATA 57.262 33.333 0.00 0.00 0.00 0.98
300 301 7.679732 TTACGGGTTGGGATATTATATAGGG 57.320 40.000 0.00 0.00 0.00 3.53
301 302 5.606761 ACGGGTTGGGATATTATATAGGGT 58.393 41.667 0.00 0.00 0.00 4.34
302 303 5.664457 ACGGGTTGGGATATTATATAGGGTC 59.336 44.000 0.00 0.00 0.00 4.46
303 304 5.903589 CGGGTTGGGATATTATATAGGGTCT 59.096 44.000 0.00 0.00 0.00 3.85
304 305 6.183360 CGGGTTGGGATATTATATAGGGTCTG 60.183 46.154 0.00 0.00 0.00 3.51
305 306 6.409349 GGGTTGGGATATTATATAGGGTCTGC 60.409 46.154 0.00 0.00 0.00 4.26
306 307 6.387220 GGTTGGGATATTATATAGGGTCTGCT 59.613 42.308 0.00 0.00 0.00 4.24
307 308 7.567622 GGTTGGGATATTATATAGGGTCTGCTA 59.432 40.741 0.00 0.00 0.00 3.49
308 309 8.643324 GTTGGGATATTATATAGGGTCTGCTAG 58.357 40.741 0.00 0.00 0.00 3.42
309 310 8.126241 TGGGATATTATATAGGGTCTGCTAGA 57.874 38.462 0.00 0.00 0.00 2.43
310 311 8.228206 TGGGATATTATATAGGGTCTGCTAGAG 58.772 40.741 0.00 0.00 0.00 2.43
311 312 8.449625 GGGATATTATATAGGGTCTGCTAGAGA 58.550 40.741 0.00 0.00 0.00 3.10
314 315 7.595819 ATTATATAGGGTCTGCTAGAGATGC 57.404 40.000 0.00 0.00 31.63 3.91
315 316 3.541242 ATAGGGTCTGCTAGAGATGCT 57.459 47.619 0.00 0.00 31.63 3.79
316 317 1.703411 AGGGTCTGCTAGAGATGCTC 58.297 55.000 0.00 0.00 31.63 4.26
334 335 5.609533 TGCTCTAAGTCTAAATACACCCC 57.390 43.478 0.00 0.00 0.00 4.95
350 351 3.009695 ACACCCCCTTTATTGATCAACGA 59.990 43.478 11.07 0.00 0.00 3.85
363 364 5.938438 TGATCAACGACAATGTTCATTGA 57.062 34.783 25.74 8.99 35.60 2.57
368 369 8.673626 ATCAACGACAATGTTCATTGAAATAC 57.326 30.769 25.74 13.12 35.60 1.89
393 394 2.623416 TGATATCACGTGGCTGTAGGAG 59.377 50.000 17.00 0.00 0.00 3.69
416 417 6.403878 AGCGAGAAATAGCTACCTACAAAAA 58.596 36.000 0.00 0.00 42.60 1.94
421 422 8.214721 AGAAATAGCTACCTACAAAAAGATGC 57.785 34.615 0.00 0.00 0.00 3.91
453 454 5.586243 GCAAGACTATGTGCCTCAGAATTTA 59.414 40.000 0.00 0.00 34.58 1.40
676 1182 3.281727 TTCTGAAAAGCCTGTGTCAGT 57.718 42.857 0.00 0.00 38.87 3.41
681 1187 5.470098 TCTGAAAAGCCTGTGTCAGTATTTC 59.530 40.000 0.00 0.00 38.87 2.17
767 3063 4.095782 GTGCATACGATAGAAGCCCAAAAA 59.904 41.667 0.00 0.00 41.38 1.94
768 3064 4.887071 TGCATACGATAGAAGCCCAAAAAT 59.113 37.500 0.00 0.00 41.38 1.82
770 3066 5.562890 GCATACGATAGAAGCCCAAAAATCC 60.563 44.000 0.00 0.00 41.38 3.01
771 3067 4.236527 ACGATAGAAGCCCAAAAATCCT 57.763 40.909 0.00 0.00 41.38 3.24
784 3083 2.957402 AAATCCTCACAGTGCTCCAA 57.043 45.000 0.00 0.00 0.00 3.53
797 3096 0.817654 GCTCCAAAAGCCCATACCAC 59.182 55.000 0.00 0.00 45.92 4.16
832 3131 3.494749 CCTCTAACCTAGATCGGACGACT 60.495 52.174 0.00 0.00 33.66 4.18
839 3138 0.938713 AGATCGGACGACTAGAAGCG 59.061 55.000 0.00 0.00 0.00 4.68
881 3180 4.073549 GCTCTTATAGAACTCCTCGCCTA 58.926 47.826 0.00 0.00 0.00 3.93
1060 3368 3.662759 TTCTCTCTCTCCTTCTCCCTC 57.337 52.381 0.00 0.00 0.00 4.30
1086 3395 3.073678 TCTTGGTTGATGACGATTGTGG 58.926 45.455 0.00 0.00 0.00 4.17
1095 3404 3.347958 TGACGATTGTGGCTTGTTTTC 57.652 42.857 0.00 0.00 0.00 2.29
1122 3431 0.465460 TGCAGCCGTTCAAGAGGTTT 60.465 50.000 0.00 0.00 0.00 3.27
1140 3449 4.222847 GTGGAGATCGGGCGGGTC 62.223 72.222 0.00 0.00 0.00 4.46
1173 3482 4.078516 GGCAAGGACTACGGCCGT 62.079 66.667 36.01 36.01 35.31 5.68
1221 3530 2.816087 CCAGAACAGGGTGAGTTTGATG 59.184 50.000 0.00 0.00 0.00 3.07
1239 3553 2.586792 CCCTTCCCTGCTTCCTCG 59.413 66.667 0.00 0.00 0.00 4.63
1259 3573 2.926200 CGTGTCATTCTCGATCTGCTTT 59.074 45.455 0.00 0.00 35.42 3.51
1261 3575 3.928992 GTGTCATTCTCGATCTGCTTTGA 59.071 43.478 0.00 0.00 0.00 2.69
1423 3755 6.183360 CGGATATCATAGTGTTTCTGCGATTC 60.183 42.308 4.83 0.00 0.00 2.52
1565 3986 3.926527 TCTTGTCAGCGCAGTTATGTTAG 59.073 43.478 11.47 0.00 0.00 2.34
1620 4041 2.171659 TCTAACATGCGGCCCTTTATCA 59.828 45.455 0.00 0.00 0.00 2.15
1728 4150 9.188588 TGAGTTACTACTGAAAATAAACAGACG 57.811 33.333 0.00 0.00 37.54 4.18
1838 4262 8.641498 ATTAACTTCATCTTCCATGAGTTGTT 57.359 30.769 0.00 0.00 0.00 2.83
1839 4263 5.954296 ACTTCATCTTCCATGAGTTGTTG 57.046 39.130 0.00 0.00 0.00 3.33
1840 4264 4.763793 ACTTCATCTTCCATGAGTTGTTGG 59.236 41.667 0.00 0.00 0.00 3.77
1859 4283 2.225091 TGGTTTGTGATGCCTTCATCCT 60.225 45.455 3.19 0.00 46.60 3.24
1861 4285 2.424956 GTTTGTGATGCCTTCATCCTCC 59.575 50.000 3.19 0.00 46.60 4.30
1984 4424 4.101448 AAGGCGAGGCAAGGCGAT 62.101 61.111 0.00 0.00 39.33 4.58
2124 4572 2.181419 TCTAGTGGCCATATACACCCCT 59.819 50.000 9.72 0.00 38.34 4.79
2245 4740 0.694771 TTCTCCCTCACAGCAGCAAT 59.305 50.000 0.00 0.00 0.00 3.56
2379 4939 6.096423 AGCCGTACACTTCATATCTGTCTAAA 59.904 38.462 0.00 0.00 0.00 1.85
2455 5015 3.484721 GGCGACGCCTTAAAAACATAGTC 60.485 47.826 31.30 0.00 46.69 2.59
2456 5016 3.370061 GCGACGCCTTAAAAACATAGTCT 59.630 43.478 9.14 0.00 0.00 3.24
2457 5017 4.563976 GCGACGCCTTAAAAACATAGTCTA 59.436 41.667 9.14 0.00 0.00 2.59
2458 5018 5.499812 GCGACGCCTTAAAAACATAGTCTAC 60.500 44.000 9.14 0.00 0.00 2.59
2459 5019 5.803967 CGACGCCTTAAAAACATAGTCTACT 59.196 40.000 0.00 0.00 0.00 2.57
2460 5020 6.968904 CGACGCCTTAAAAACATAGTCTACTA 59.031 38.462 0.00 0.00 0.00 1.82
2461 5021 7.044445 CGACGCCTTAAAAACATAGTCTACTAC 60.044 40.741 0.00 0.00 0.00 2.73
2830 5398 5.551233 TGTTCTTTGACCCTTAGTCTCATG 58.449 41.667 0.00 0.00 46.46 3.07
2853 5421 4.646492 GGACTGTTTATCTGGAATGGCATT 59.354 41.667 13.54 13.54 0.00 3.56
2923 5491 4.276642 AGTGATCAGAGTGAGATACTGCA 58.723 43.478 0.00 0.00 40.53 4.41
2939 5507 4.383850 ACTGCATCTGACTAAGCACTAG 57.616 45.455 0.00 0.00 32.87 2.57
2961 5529 3.489355 CCTGCCCATTATGCTTGATGTA 58.511 45.455 4.05 0.00 0.00 2.29
2995 5563 3.641648 CCCATTATGCTGCAAATAACGG 58.358 45.455 6.36 3.70 0.00 4.44
3018 5586 6.210078 GGGACTTCTATTGTCTACATTCTCG 58.790 44.000 0.00 0.00 35.04 4.04
3032 5600 3.813724 ACATTCTCGATGATGATTGCCTG 59.186 43.478 13.27 0.00 39.15 4.85
3040 5608 2.847441 TGATGATTGCCTGATCTGCTC 58.153 47.619 8.84 1.22 0.00 4.26
3094 5662 8.613482 GTTAACTTCCCTAGAGTTGATATTTGC 58.387 37.037 0.00 0.00 37.84 3.68
3137 5705 7.539034 AAGTATATGGTTTTCTTTGGTTGCT 57.461 32.000 0.00 0.00 0.00 3.91
3138 5706 6.924111 AGTATATGGTTTTCTTTGGTTGCTG 58.076 36.000 0.00 0.00 0.00 4.41
3313 5881 4.919774 TGGAGGAAGCTGGTATTAAACA 57.080 40.909 0.00 0.00 0.00 2.83
3425 6000 0.034767 CTCATGGGGCAAGAAGCTGA 60.035 55.000 0.00 0.00 44.79 4.26
3438 6013 4.630644 AGAAGCTGATTGTCCAGAAGAA 57.369 40.909 0.00 0.00 36.29 2.52
3445 6020 1.734655 TTGTCCAGAAGAAGAGGGCT 58.265 50.000 0.00 0.00 0.00 5.19
3446 6021 0.979665 TGTCCAGAAGAAGAGGGCTG 59.020 55.000 0.00 0.00 0.00 4.85
3481 6056 2.508526 GACAGGTTCAAGGTCATGCTT 58.491 47.619 0.00 0.00 0.00 3.91
3503 6078 2.948315 GCCAAGATCAAGGTGAGATTCC 59.052 50.000 0.00 0.00 0.00 3.01
3520 6095 3.524095 TTCCCAAAGGCTCTTTCATGA 57.476 42.857 0.00 0.00 0.00 3.07
3714 6289 4.566360 CCCCAAAATCGTGAAATATTGTGC 59.434 41.667 0.00 0.00 0.00 4.57
3792 6367 0.615331 TGCTGGACTTGTCAGGATCC 59.385 55.000 2.48 2.48 33.16 3.36
3847 6422 2.298163 GCCATCTAAATTCATGGGCCTG 59.702 50.000 4.53 0.24 40.16 4.85
3854 6429 0.974010 ATTCATGGGCCTGGTGCTTG 60.974 55.000 4.53 0.00 40.92 4.01
3869 6444 1.202687 TGCTTGCTGTTAGTCTGCTGT 60.203 47.619 0.00 0.00 40.79 4.40
3870 6445 1.196354 GCTTGCTGTTAGTCTGCTGTG 59.804 52.381 0.00 0.00 40.79 3.66
3875 6450 0.603707 TGTTAGTCTGCTGTGCCTGC 60.604 55.000 0.00 0.00 0.00 4.85
3887 6462 2.512515 GCCTGCTTACCTCCAGCG 60.513 66.667 0.00 0.00 40.45 5.18
3898 6473 1.032114 CCTCCAGCGGTCCAAAATCC 61.032 60.000 0.00 0.00 0.00 3.01
3928 6503 3.978193 TGGCTCCACCGGGCATTT 61.978 61.111 6.32 0.00 43.94 2.32
3958 6533 2.749621 ACAGCTTTGTTCCAATCGATCC 59.250 45.455 0.00 0.00 0.00 3.36
3968 6543 5.943416 TGTTCCAATCGATCCTGTTTATGTT 59.057 36.000 0.00 0.00 0.00 2.71
3969 6544 7.106890 TGTTCCAATCGATCCTGTTTATGTTA 58.893 34.615 0.00 0.00 0.00 2.41
4106 7248 2.669391 GCAGATTGCGTGCTTTAGCTTT 60.669 45.455 0.00 0.00 37.96 3.51
4107 7249 3.426159 GCAGATTGCGTGCTTTAGCTTTA 60.426 43.478 0.00 0.00 37.96 1.85
4120 7262 9.401058 GTGCTTTAGCTTTATATATGGATGGAT 57.599 33.333 0.00 0.00 42.66 3.41
4185 7655 2.031595 ACGTAATGCAACATCAACGCAA 60.032 40.909 12.55 0.00 39.48 4.85
4217 7687 6.126863 ACTCAACTTTGTCCATCAATAGGA 57.873 37.500 0.00 0.00 35.84 2.94
4291 8369 4.094294 GGCATAAGTTTTGTCGCACATAGA 59.906 41.667 0.00 0.00 0.00 1.98
4367 8445 0.531974 GGTTGTCTTCCACTGCGTGA 60.532 55.000 9.75 0.00 35.23 4.35
4506 8599 4.518970 ACAACAACCATCTCATTACACCAC 59.481 41.667 0.00 0.00 0.00 4.16
4551 8644 5.367060 ACAGTAACTCCTTCTGGAAAGAAGT 59.633 40.000 13.02 0.00 42.66 3.01
4575 8668 1.679641 TCATGGGTCACCGTCGCTA 60.680 57.895 0.00 0.00 40.75 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.570663 CATCCGCTCGTCCCCGAC 62.571 72.222 0.00 0.00 38.40 4.79
51 52 3.917760 CTCCCATCCGCTCGTCCC 61.918 72.222 0.00 0.00 0.00 4.46
52 53 4.593864 GCTCCCATCCGCTCGTCC 62.594 72.222 0.00 0.00 0.00 4.79
53 54 4.933064 CGCTCCCATCCGCTCGTC 62.933 72.222 0.00 0.00 0.00 4.20
55 56 4.637489 CTCGCTCCCATCCGCTCG 62.637 72.222 0.00 0.00 0.00 5.03
56 57 4.959596 GCTCGCTCCCATCCGCTC 62.960 72.222 0.00 0.00 0.00 5.03
60 61 4.899239 CACGGCTCGCTCCCATCC 62.899 72.222 0.00 0.00 0.00 3.51
61 62 3.371097 TTCACGGCTCGCTCCCATC 62.371 63.158 0.00 0.00 0.00 3.51
62 63 3.376935 CTTCACGGCTCGCTCCCAT 62.377 63.158 0.00 0.00 0.00 4.00
63 64 4.069232 CTTCACGGCTCGCTCCCA 62.069 66.667 0.00 0.00 0.00 4.37
64 65 4.821589 CCTTCACGGCTCGCTCCC 62.822 72.222 0.00 0.00 0.00 4.30
65 66 3.591254 AACCTTCACGGCTCGCTCC 62.591 63.158 0.00 0.00 35.61 4.70
66 67 2.048127 AACCTTCACGGCTCGCTC 60.048 61.111 0.00 0.00 35.61 5.03
67 68 2.048127 GAACCTTCACGGCTCGCT 60.048 61.111 0.00 0.00 35.61 4.93
68 69 3.119096 GGAACCTTCACGGCTCGC 61.119 66.667 0.00 0.00 35.61 5.03
69 70 2.558554 ATCGGAACCTTCACGGCTCG 62.559 60.000 0.00 0.00 35.61 5.03
70 71 1.084370 CATCGGAACCTTCACGGCTC 61.084 60.000 0.00 0.00 35.61 4.70
71 72 1.079127 CATCGGAACCTTCACGGCT 60.079 57.895 0.00 0.00 35.61 5.52
72 73 2.106683 CCATCGGAACCTTCACGGC 61.107 63.158 0.00 0.00 35.61 5.68
73 74 0.533491 TACCATCGGAACCTTCACGG 59.467 55.000 0.00 0.00 39.35 4.94
74 75 1.203994 ACTACCATCGGAACCTTCACG 59.796 52.381 0.00 0.00 0.00 4.35
75 76 3.329929 AACTACCATCGGAACCTTCAC 57.670 47.619 0.00 0.00 0.00 3.18
76 77 4.346730 TCTAACTACCATCGGAACCTTCA 58.653 43.478 0.00 0.00 0.00 3.02
77 78 4.996788 TCTAACTACCATCGGAACCTTC 57.003 45.455 0.00 0.00 0.00 3.46
78 79 5.163332 GGAATCTAACTACCATCGGAACCTT 60.163 44.000 0.00 0.00 0.00 3.50
79 80 4.344390 GGAATCTAACTACCATCGGAACCT 59.656 45.833 0.00 0.00 0.00 3.50
80 81 4.502777 GGGAATCTAACTACCATCGGAACC 60.503 50.000 0.00 0.00 0.00 3.62
81 82 4.629092 GGGAATCTAACTACCATCGGAAC 58.371 47.826 0.00 0.00 0.00 3.62
82 83 3.319972 CGGGAATCTAACTACCATCGGAA 59.680 47.826 0.00 0.00 0.00 4.30
83 84 2.889045 CGGGAATCTAACTACCATCGGA 59.111 50.000 0.00 0.00 0.00 4.55
84 85 2.609737 GCGGGAATCTAACTACCATCGG 60.610 54.545 0.00 0.00 0.00 4.18
85 86 2.609737 GGCGGGAATCTAACTACCATCG 60.610 54.545 0.00 0.00 0.00 3.84
86 87 2.367567 TGGCGGGAATCTAACTACCATC 59.632 50.000 0.00 0.00 0.00 3.51
87 88 2.404559 TGGCGGGAATCTAACTACCAT 58.595 47.619 0.00 0.00 0.00 3.55
88 89 1.868713 TGGCGGGAATCTAACTACCA 58.131 50.000 0.00 0.00 0.00 3.25
89 90 2.558378 GTTGGCGGGAATCTAACTACC 58.442 52.381 0.00 0.00 0.00 3.18
90 91 2.199236 CGTTGGCGGGAATCTAACTAC 58.801 52.381 0.00 0.00 0.00 2.73
91 92 2.589798 CGTTGGCGGGAATCTAACTA 57.410 50.000 0.00 0.00 0.00 2.24
92 93 3.453559 CGTTGGCGGGAATCTAACT 57.546 52.632 0.00 0.00 0.00 2.24
103 104 1.642037 TACTCGAGAGACCGTTGGCG 61.642 60.000 21.68 0.00 35.39 5.69
104 105 0.739561 ATACTCGAGAGACCGTTGGC 59.260 55.000 21.68 0.00 35.39 4.52
105 106 2.941064 TGTATACTCGAGAGACCGTTGG 59.059 50.000 21.68 0.00 35.39 3.77
106 107 3.002451 CCTGTATACTCGAGAGACCGTTG 59.998 52.174 21.68 2.07 35.39 4.10
107 108 3.204526 CCTGTATACTCGAGAGACCGTT 58.795 50.000 21.68 0.00 35.39 4.44
108 109 2.485124 CCCTGTATACTCGAGAGACCGT 60.485 54.545 21.68 0.00 35.39 4.83
109 110 2.144730 CCCTGTATACTCGAGAGACCG 58.855 57.143 21.68 9.59 35.39 4.79
110 111 1.881324 GCCCTGTATACTCGAGAGACC 59.119 57.143 21.68 4.74 35.39 3.85
111 112 1.881324 GGCCCTGTATACTCGAGAGAC 59.119 57.143 21.68 13.64 35.39 3.36
112 113 1.542767 CGGCCCTGTATACTCGAGAGA 60.543 57.143 21.68 6.86 39.12 3.10
113 114 0.875728 CGGCCCTGTATACTCGAGAG 59.124 60.000 21.68 5.16 0.00 3.20
114 115 1.170919 GCGGCCCTGTATACTCGAGA 61.171 60.000 21.68 2.92 0.00 4.04
115 116 1.173444 AGCGGCCCTGTATACTCGAG 61.173 60.000 11.84 11.84 0.00 4.04
116 117 0.754217 AAGCGGCCCTGTATACTCGA 60.754 55.000 4.17 0.00 0.00 4.04
117 118 0.104304 AAAGCGGCCCTGTATACTCG 59.896 55.000 4.17 2.32 0.00 4.18
118 119 1.583054 CAAAGCGGCCCTGTATACTC 58.417 55.000 4.17 0.00 0.00 2.59
119 120 0.180406 CCAAAGCGGCCCTGTATACT 59.820 55.000 4.17 0.00 0.00 2.12
120 121 0.107361 ACCAAAGCGGCCCTGTATAC 60.107 55.000 0.00 0.00 39.03 1.47
121 122 0.621609 AACCAAAGCGGCCCTGTATA 59.378 50.000 0.00 0.00 39.03 1.47
122 123 0.251608 AAACCAAAGCGGCCCTGTAT 60.252 50.000 0.00 0.00 39.03 2.29
123 124 1.151908 AAACCAAAGCGGCCCTGTA 59.848 52.632 0.00 0.00 39.03 2.74
124 125 2.123468 AAACCAAAGCGGCCCTGT 60.123 55.556 0.00 0.00 39.03 4.00
125 126 2.339712 CAAACCAAAGCGGCCCTG 59.660 61.111 0.00 0.00 39.03 4.45
126 127 2.917227 CCAAACCAAAGCGGCCCT 60.917 61.111 0.00 0.00 39.03 5.19
127 128 4.680237 GCCAAACCAAAGCGGCCC 62.680 66.667 0.00 0.00 38.67 5.80
128 129 3.573772 GAGCCAAACCAAAGCGGCC 62.574 63.158 0.00 0.00 46.08 6.13
129 130 2.049156 GAGCCAAACCAAAGCGGC 60.049 61.111 0.00 0.00 45.23 6.53
130 131 2.650778 GGAGCCAAACCAAAGCGG 59.349 61.111 0.00 0.00 42.50 5.52
131 132 1.791103 TTCGGAGCCAAACCAAAGCG 61.791 55.000 0.00 0.00 0.00 4.68
132 133 0.387565 TTTCGGAGCCAAACCAAAGC 59.612 50.000 0.00 0.00 0.00 3.51
133 134 2.352715 GGATTTCGGAGCCAAACCAAAG 60.353 50.000 0.00 0.00 0.00 2.77
134 135 1.616374 GGATTTCGGAGCCAAACCAAA 59.384 47.619 0.00 0.00 0.00 3.28
135 136 1.203001 AGGATTTCGGAGCCAAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
136 137 0.404040 AGGATTTCGGAGCCAAACCA 59.596 50.000 0.00 0.00 0.00 3.67
137 138 1.545841 AAGGATTTCGGAGCCAAACC 58.454 50.000 0.00 0.00 0.00 3.27
138 139 4.983671 AATAAGGATTTCGGAGCCAAAC 57.016 40.909 0.00 0.00 0.00 2.93
139 140 5.478679 TGAAAATAAGGATTTCGGAGCCAAA 59.521 36.000 0.00 0.00 39.17 3.28
140 141 5.013547 TGAAAATAAGGATTTCGGAGCCAA 58.986 37.500 0.00 0.00 39.17 4.52
141 142 4.398044 GTGAAAATAAGGATTTCGGAGCCA 59.602 41.667 0.00 0.00 39.17 4.75
142 143 4.398044 TGTGAAAATAAGGATTTCGGAGCC 59.602 41.667 0.00 0.00 39.17 4.70
143 144 5.123979 ACTGTGAAAATAAGGATTTCGGAGC 59.876 40.000 0.00 0.00 39.17 4.70
144 145 6.743575 ACTGTGAAAATAAGGATTTCGGAG 57.256 37.500 0.00 0.00 39.17 4.63
145 146 7.229707 TGAAACTGTGAAAATAAGGATTTCGGA 59.770 33.333 0.00 0.00 39.17 4.55
146 147 7.367285 TGAAACTGTGAAAATAAGGATTTCGG 58.633 34.615 0.00 0.00 39.17 4.30
147 148 8.690840 GTTGAAACTGTGAAAATAAGGATTTCG 58.309 33.333 0.00 0.00 39.17 3.46
148 149 8.690840 CGTTGAAACTGTGAAAATAAGGATTTC 58.309 33.333 0.00 0.00 34.01 2.17
149 150 8.194769 ACGTTGAAACTGTGAAAATAAGGATTT 58.805 29.630 0.00 0.00 36.82 2.17
150 151 7.647715 CACGTTGAAACTGTGAAAATAAGGATT 59.352 33.333 10.58 0.00 36.35 3.01
151 152 7.012894 TCACGTTGAAACTGTGAAAATAAGGAT 59.987 33.333 14.21 0.00 38.49 3.24
152 153 6.316640 TCACGTTGAAACTGTGAAAATAAGGA 59.683 34.615 14.21 0.00 38.49 3.36
153 154 6.491394 TCACGTTGAAACTGTGAAAATAAGG 58.509 36.000 14.21 0.00 38.49 2.69
154 155 7.962934 TTCACGTTGAAACTGTGAAAATAAG 57.037 32.000 20.66 0.00 42.92 1.73
155 156 7.971168 ACATTCACGTTGAAACTGTGAAAATAA 59.029 29.630 23.79 11.45 45.57 1.40
156 157 7.476667 ACATTCACGTTGAAACTGTGAAAATA 58.523 30.769 23.79 11.68 45.57 1.40
157 158 6.329496 ACATTCACGTTGAAACTGTGAAAAT 58.671 32.000 23.79 17.00 45.57 1.82
158 159 5.704888 ACATTCACGTTGAAACTGTGAAAA 58.295 33.333 23.79 12.37 45.57 2.29
159 160 5.303747 ACATTCACGTTGAAACTGTGAAA 57.696 34.783 23.79 14.67 45.57 2.69
160 161 4.955925 ACATTCACGTTGAAACTGTGAA 57.044 36.364 22.97 22.97 45.99 3.18
161 162 4.955925 AACATTCACGTTGAAACTGTGA 57.044 36.364 13.20 13.20 40.12 3.58
162 163 5.004345 GGAAAACATTCACGTTGAAACTGTG 59.996 40.000 4.87 10.09 40.12 3.66
163 164 5.099575 GGAAAACATTCACGTTGAAACTGT 58.900 37.500 4.87 3.81 40.12 3.55
164 165 5.004345 GTGGAAAACATTCACGTTGAAACTG 59.996 40.000 4.87 3.31 40.12 3.16
165 166 5.099575 GTGGAAAACATTCACGTTGAAACT 58.900 37.500 4.87 0.00 40.12 2.66
166 167 4.028026 CGTGGAAAACATTCACGTTGAAAC 60.028 41.667 6.89 0.00 46.04 2.78
167 168 4.099120 CGTGGAAAACATTCACGTTGAAA 58.901 39.130 6.89 0.00 46.04 2.69
168 169 3.686128 CGTGGAAAACATTCACGTTGAA 58.314 40.909 6.89 3.49 46.04 2.69
169 170 3.326733 CGTGGAAAACATTCACGTTGA 57.673 42.857 6.89 0.00 46.04 3.18
174 175 0.038618 GGGGCGTGGAAAACATTCAC 60.039 55.000 0.00 0.00 0.00 3.18
175 176 0.178975 AGGGGCGTGGAAAACATTCA 60.179 50.000 0.00 0.00 0.00 2.57
176 177 0.966179 AAGGGGCGTGGAAAACATTC 59.034 50.000 0.00 0.00 0.00 2.67
177 178 2.296073 TAAGGGGCGTGGAAAACATT 57.704 45.000 0.00 0.00 0.00 2.71
178 179 2.296073 TTAAGGGGCGTGGAAAACAT 57.704 45.000 0.00 0.00 0.00 2.71
179 180 2.068834 TTTAAGGGGCGTGGAAAACA 57.931 45.000 0.00 0.00 0.00 2.83
180 181 2.363038 AGTTTTAAGGGGCGTGGAAAAC 59.637 45.455 7.81 7.81 39.28 2.43
181 182 2.668625 AGTTTTAAGGGGCGTGGAAAA 58.331 42.857 0.00 0.00 0.00 2.29
182 183 2.368311 AGTTTTAAGGGGCGTGGAAA 57.632 45.000 0.00 0.00 0.00 3.13
183 184 2.368311 AAGTTTTAAGGGGCGTGGAA 57.632 45.000 0.00 0.00 0.00 3.53
184 185 2.368311 AAAGTTTTAAGGGGCGTGGA 57.632 45.000 0.00 0.00 0.00 4.02
185 186 3.462483 AAAAAGTTTTAAGGGGCGTGG 57.538 42.857 0.24 0.00 0.00 4.94
186 187 4.934515 TGTAAAAAGTTTTAAGGGGCGTG 58.065 39.130 0.24 0.00 34.71 5.34
187 188 4.038282 CCTGTAAAAAGTTTTAAGGGGCGT 59.962 41.667 13.29 0.00 34.71 5.68
188 189 4.038282 ACCTGTAAAAAGTTTTAAGGGGCG 59.962 41.667 20.44 4.07 36.42 6.13
189 190 5.510179 GGACCTGTAAAAAGTTTTAAGGGGC 60.510 44.000 20.44 14.08 36.42 5.80
190 191 5.278610 CGGACCTGTAAAAAGTTTTAAGGGG 60.279 44.000 20.44 14.55 36.42 4.79
191 192 5.532032 TCGGACCTGTAAAAAGTTTTAAGGG 59.468 40.000 20.44 14.29 36.42 3.95
192 193 6.432936 GTCGGACCTGTAAAAAGTTTTAAGG 58.567 40.000 17.13 17.13 37.18 2.69
193 194 6.131389 CGTCGGACCTGTAAAAAGTTTTAAG 58.869 40.000 0.24 0.54 34.71 1.85
194 195 5.503846 GCGTCGGACCTGTAAAAAGTTTTAA 60.504 40.000 0.24 0.00 34.71 1.52
195 196 4.024977 GCGTCGGACCTGTAAAAAGTTTTA 60.025 41.667 0.24 0.00 0.00 1.52
196 197 3.242837 GCGTCGGACCTGTAAAAAGTTTT 60.243 43.478 1.91 0.00 0.00 2.43
197 198 2.288729 GCGTCGGACCTGTAAAAAGTTT 59.711 45.455 1.91 0.00 0.00 2.66
198 199 1.869132 GCGTCGGACCTGTAAAAAGTT 59.131 47.619 1.91 0.00 0.00 2.66
199 200 1.505425 GCGTCGGACCTGTAAAAAGT 58.495 50.000 1.91 0.00 0.00 2.66
200 201 0.437295 CGCGTCGGACCTGTAAAAAG 59.563 55.000 0.00 0.00 0.00 2.27
201 202 0.249405 ACGCGTCGGACCTGTAAAAA 60.249 50.000 5.58 0.00 0.00 1.94
202 203 0.249405 AACGCGTCGGACCTGTAAAA 60.249 50.000 14.44 0.00 0.00 1.52
203 204 0.249405 AAACGCGTCGGACCTGTAAA 60.249 50.000 14.44 0.00 0.00 2.01
204 205 0.595588 TAAACGCGTCGGACCTGTAA 59.404 50.000 14.44 0.00 0.00 2.41
205 206 0.109781 GTAAACGCGTCGGACCTGTA 60.110 55.000 14.44 0.00 0.00 2.74
206 207 1.372128 GTAAACGCGTCGGACCTGT 60.372 57.895 14.44 0.00 0.00 4.00
207 208 1.342082 CTGTAAACGCGTCGGACCTG 61.342 60.000 14.44 3.30 0.00 4.00
208 209 1.080974 CTGTAAACGCGTCGGACCT 60.081 57.895 14.44 0.00 0.00 3.85
209 210 1.372128 ACTGTAAACGCGTCGGACC 60.372 57.895 14.44 0.00 0.00 4.46
210 211 0.936297 ACACTGTAAACGCGTCGGAC 60.936 55.000 14.44 11.79 0.00 4.79
211 212 0.661187 GACACTGTAAACGCGTCGGA 60.661 55.000 14.44 0.00 0.00 4.55
212 213 0.662374 AGACACTGTAAACGCGTCGG 60.662 55.000 14.44 8.13 0.00 4.79
213 214 0.429736 CAGACACTGTAAACGCGTCG 59.570 55.000 14.44 1.25 0.00 5.12
214 215 1.762419 TCAGACACTGTAAACGCGTC 58.238 50.000 14.44 0.00 32.61 5.19
215 216 2.325761 GATCAGACACTGTAAACGCGT 58.674 47.619 5.58 5.58 32.61 6.01
216 217 1.317611 CGATCAGACACTGTAAACGCG 59.682 52.381 3.53 3.53 32.61 6.01
217 218 1.654105 CCGATCAGACACTGTAAACGC 59.346 52.381 0.00 0.00 32.61 4.84
218 219 2.259618 CCCGATCAGACACTGTAAACG 58.740 52.381 0.00 0.00 32.61 3.60
219 220 2.993899 CACCCGATCAGACACTGTAAAC 59.006 50.000 0.00 0.00 32.61 2.01
220 221 2.894765 TCACCCGATCAGACACTGTAAA 59.105 45.455 0.00 0.00 32.61 2.01
221 222 2.230508 GTCACCCGATCAGACACTGTAA 59.769 50.000 0.00 0.00 32.61 2.41
222 223 1.816835 GTCACCCGATCAGACACTGTA 59.183 52.381 0.00 0.00 32.61 2.74
223 224 0.603569 GTCACCCGATCAGACACTGT 59.396 55.000 0.00 0.00 32.61 3.55
224 225 0.891373 AGTCACCCGATCAGACACTG 59.109 55.000 0.00 0.00 34.80 3.66
225 226 1.633774 AAGTCACCCGATCAGACACT 58.366 50.000 0.00 0.00 34.80 3.55
226 227 2.457366 AAAGTCACCCGATCAGACAC 57.543 50.000 0.00 0.00 34.80 3.67
227 228 3.485463 AAAAAGTCACCCGATCAGACA 57.515 42.857 0.00 0.00 34.80 3.41
245 246 3.496130 TCAAAATACGGTCCGCGTAAAAA 59.504 39.130 12.28 0.00 0.00 1.94
246 247 3.062763 TCAAAATACGGTCCGCGTAAAA 58.937 40.909 12.28 0.00 0.00 1.52
247 248 2.411409 GTCAAAATACGGTCCGCGTAAA 59.589 45.455 12.28 0.00 0.00 2.01
248 249 1.991965 GTCAAAATACGGTCCGCGTAA 59.008 47.619 12.28 0.00 0.00 3.18
249 250 1.627879 GTCAAAATACGGTCCGCGTA 58.372 50.000 12.28 0.00 0.00 4.42
250 251 1.346378 CGTCAAAATACGGTCCGCGT 61.346 55.000 12.28 0.00 39.19 6.01
251 252 1.342473 CGTCAAAATACGGTCCGCG 59.658 57.895 12.28 0.00 39.19 6.46
258 259 5.958949 CCCGTAAAATAACCGTCAAAATACG 59.041 40.000 0.00 0.00 42.49 3.06
259 260 6.841119 ACCCGTAAAATAACCGTCAAAATAC 58.159 36.000 0.00 0.00 0.00 1.89
260 261 7.303998 CAACCCGTAAAATAACCGTCAAAATA 58.696 34.615 0.00 0.00 0.00 1.40
261 262 5.963176 ACCCGTAAAATAACCGTCAAAAT 57.037 34.783 0.00 0.00 0.00 1.82
262 263 5.506982 CCAACCCGTAAAATAACCGTCAAAA 60.507 40.000 0.00 0.00 0.00 2.44
263 264 4.023365 CCAACCCGTAAAATAACCGTCAAA 60.023 41.667 0.00 0.00 0.00 2.69
264 265 3.501445 CCAACCCGTAAAATAACCGTCAA 59.499 43.478 0.00 0.00 0.00 3.18
265 266 3.072944 CCAACCCGTAAAATAACCGTCA 58.927 45.455 0.00 0.00 0.00 4.35
266 267 2.419673 CCCAACCCGTAAAATAACCGTC 59.580 50.000 0.00 0.00 0.00 4.79
267 268 2.039613 TCCCAACCCGTAAAATAACCGT 59.960 45.455 0.00 0.00 0.00 4.83
268 269 2.709213 TCCCAACCCGTAAAATAACCG 58.291 47.619 0.00 0.00 0.00 4.44
269 270 6.964807 AATATCCCAACCCGTAAAATAACC 57.035 37.500 0.00 0.00 0.00 2.85
274 275 8.550585 CCCTATATAATATCCCAACCCGTAAAA 58.449 37.037 0.00 0.00 0.00 1.52
275 276 7.683754 ACCCTATATAATATCCCAACCCGTAAA 59.316 37.037 0.00 0.00 0.00 2.01
276 277 7.198332 ACCCTATATAATATCCCAACCCGTAA 58.802 38.462 0.00 0.00 0.00 3.18
277 278 6.755224 ACCCTATATAATATCCCAACCCGTA 58.245 40.000 0.00 0.00 0.00 4.02
278 279 5.606761 ACCCTATATAATATCCCAACCCGT 58.393 41.667 0.00 0.00 0.00 5.28
279 280 5.903589 AGACCCTATATAATATCCCAACCCG 59.096 44.000 0.00 0.00 0.00 5.28
280 281 6.409349 GCAGACCCTATATAATATCCCAACCC 60.409 46.154 0.00 0.00 0.00 4.11
281 282 6.387220 AGCAGACCCTATATAATATCCCAACC 59.613 42.308 0.00 0.00 0.00 3.77
282 283 7.439108 AGCAGACCCTATATAATATCCCAAC 57.561 40.000 0.00 0.00 0.00 3.77
283 284 8.574853 TCTAGCAGACCCTATATAATATCCCAA 58.425 37.037 0.00 0.00 0.00 4.12
284 285 8.126241 TCTAGCAGACCCTATATAATATCCCA 57.874 38.462 0.00 0.00 0.00 4.37
285 286 8.449625 TCTCTAGCAGACCCTATATAATATCCC 58.550 40.741 0.00 0.00 0.00 3.85
288 289 9.308000 GCATCTCTAGCAGACCCTATATAATAT 57.692 37.037 0.00 0.00 32.26 1.28
289 290 8.506921 AGCATCTCTAGCAGACCCTATATAATA 58.493 37.037 0.00 0.00 32.26 0.98
290 291 7.361438 AGCATCTCTAGCAGACCCTATATAAT 58.639 38.462 0.00 0.00 32.26 1.28
291 292 6.736581 AGCATCTCTAGCAGACCCTATATAA 58.263 40.000 0.00 0.00 32.26 0.98
292 293 6.334378 AGCATCTCTAGCAGACCCTATATA 57.666 41.667 0.00 0.00 32.26 0.86
293 294 5.200483 GAGCATCTCTAGCAGACCCTATAT 58.800 45.833 0.00 0.00 32.26 0.86
294 295 4.594970 GAGCATCTCTAGCAGACCCTATA 58.405 47.826 0.00 0.00 32.26 1.31
295 296 3.430453 GAGCATCTCTAGCAGACCCTAT 58.570 50.000 0.00 0.00 32.26 2.57
296 297 2.870175 GAGCATCTCTAGCAGACCCTA 58.130 52.381 0.00 0.00 32.26 3.53
297 298 1.703411 GAGCATCTCTAGCAGACCCT 58.297 55.000 0.00 0.00 32.26 4.34
310 311 6.224584 GGGGTGTATTTAGACTTAGAGCATC 58.775 44.000 0.00 0.00 0.00 3.91
311 312 5.071923 GGGGGTGTATTTAGACTTAGAGCAT 59.928 44.000 0.00 0.00 0.00 3.79
312 313 4.407945 GGGGGTGTATTTAGACTTAGAGCA 59.592 45.833 0.00 0.00 0.00 4.26
313 314 4.654724 AGGGGGTGTATTTAGACTTAGAGC 59.345 45.833 0.00 0.00 0.00 4.09
314 315 6.809976 AAGGGGGTGTATTTAGACTTAGAG 57.190 41.667 0.00 0.00 0.00 2.43
315 316 8.865244 ATAAAGGGGGTGTATTTAGACTTAGA 57.135 34.615 0.00 0.00 0.00 2.10
316 317 9.338622 CAATAAAGGGGGTGTATTTAGACTTAG 57.661 37.037 0.00 0.00 0.00 2.18
334 335 7.304735 TGAACATTGTCGTTGATCAATAAAGG 58.695 34.615 12.12 8.16 33.69 3.11
363 364 6.318648 ACAGCCACGTGATATCAATTGTATTT 59.681 34.615 19.30 0.00 0.00 1.40
368 369 4.212004 CCTACAGCCACGTGATATCAATTG 59.788 45.833 19.30 7.37 0.00 2.32
393 394 6.534079 TCTTTTTGTAGGTAGCTATTTCTCGC 59.466 38.462 4.71 0.00 0.00 5.03
395 396 8.338986 GCATCTTTTTGTAGGTAGCTATTTCTC 58.661 37.037 4.71 0.00 0.00 2.87
416 417 6.037940 CACATAGTCTTGCTAAACATGCATCT 59.962 38.462 0.00 0.00 40.34 2.90
421 422 4.637534 AGGCACATAGTCTTGCTAAACATG 59.362 41.667 0.00 0.00 38.85 3.21
431 432 7.398024 ACTTAAATTCTGAGGCACATAGTCTT 58.602 34.615 0.00 0.00 27.31 3.01
453 454 5.372373 CTTCACTTTTGAGGGAAGAGACTT 58.628 41.667 11.96 0.00 39.20 3.01
479 480 0.107410 TGCCGGTGTTTCAGTCTTGT 60.107 50.000 1.90 0.00 0.00 3.16
530 531 2.433868 TCTTGACCGTCTTGCTACAC 57.566 50.000 0.00 0.00 0.00 2.90
667 1162 5.639506 CCTACAACCTGAAATACTGACACAG 59.360 44.000 0.00 0.00 37.52 3.66
676 1182 2.189676 TCGGGCCTACAACCTGAAATA 58.810 47.619 0.84 0.00 39.68 1.40
681 1187 1.691976 TCATATCGGGCCTACAACCTG 59.308 52.381 0.84 0.00 34.63 4.00
767 3063 2.787994 CTTTTGGAGCACTGTGAGGAT 58.212 47.619 12.86 0.00 0.00 3.24
768 3064 2.260844 CTTTTGGAGCACTGTGAGGA 57.739 50.000 12.86 0.00 0.00 3.71
784 3083 0.252057 GGGGTTGTGGTATGGGCTTT 60.252 55.000 0.00 0.00 0.00 3.51
792 3091 0.479378 GGTTTCTGGGGGTTGTGGTA 59.521 55.000 0.00 0.00 0.00 3.25
797 3096 2.554564 GGTTAGAGGTTTCTGGGGGTTG 60.555 54.545 0.00 0.00 34.79 3.77
832 3131 1.746470 TCTGGTGATCGACGCTTCTA 58.254 50.000 0.00 0.00 0.00 2.10
881 3180 4.341487 TGTAGCGGATGTGTATATAGCCT 58.659 43.478 0.00 0.00 0.00 4.58
1060 3368 0.790207 CGTCATCAACCAAGACCACG 59.210 55.000 0.00 0.00 0.00 4.94
1086 3395 1.262166 GCACGAGCACGAAAACAAGC 61.262 55.000 11.40 0.00 42.66 4.01
1140 3449 2.125673 CCGTAGTTCACCAGGGCG 60.126 66.667 0.00 0.00 0.00 6.13
1221 3530 2.273776 GAGGAAGCAGGGAAGGGC 59.726 66.667 0.00 0.00 0.00 5.19
1239 3553 3.928992 TCAAAGCAGATCGAGAATGACAC 59.071 43.478 0.00 0.00 0.00 3.67
1259 3573 0.536687 CCGTATAGGCTCCTCCGTCA 60.537 60.000 0.00 0.00 40.77 4.35
1261 3575 0.536915 GTCCGTATAGGCTCCTCCGT 60.537 60.000 0.00 0.00 40.77 4.69
1396 3728 5.239963 TCGCAGAAACACTATGATATCCGTA 59.760 40.000 0.00 0.00 0.00 4.02
1423 3755 7.698836 ATGCAAGCAAAGTTAAGTAACAAAG 57.301 32.000 0.00 0.00 38.62 2.77
1497 3918 7.721402 AGTGTAAACTTCAAATGGCATGTAAA 58.279 30.769 0.00 0.00 0.00 2.01
1498 3919 7.283625 AGTGTAAACTTCAAATGGCATGTAA 57.716 32.000 0.00 0.00 0.00 2.41
1540 3961 2.065993 TAACTGCGCTGACAAGAGTC 57.934 50.000 21.92 0.00 45.19 3.36
1585 4006 6.648310 CCGCATGTTAGAGATGAGTCAAATAT 59.352 38.462 0.00 0.00 0.00 1.28
1620 4041 6.538945 ACAACTAAAAACATTGTCAGGGTT 57.461 33.333 0.00 0.00 30.82 4.11
1726 4148 2.401583 TTGAGCAATAGCATGTCCGT 57.598 45.000 0.00 0.00 45.49 4.69
1728 4150 6.206243 ACAGATATTTGAGCAATAGCATGTCC 59.794 38.462 0.00 0.00 45.49 4.02
1808 4230 9.965902 ACTCATGGAAGATGAAGTTAATACTTT 57.034 29.630 0.00 0.00 44.51 2.66
1859 4283 5.896106 TGCTATCATGAGAAGAAGAAGAGGA 59.104 40.000 11.14 0.00 0.00 3.71
1861 4285 5.693104 GCTGCTATCATGAGAAGAAGAAGAG 59.307 44.000 16.68 0.00 0.00 2.85
1984 4424 4.343526 TCTTTTCCTGCAATGTTTAAGGCA 59.656 37.500 0.00 0.00 34.66 4.75
2124 4572 5.529289 AGGAGATAGTGGAATTAGGTCACA 58.471 41.667 0.00 0.00 34.17 3.58
2245 4740 4.980592 TGTGGCTGCTCCTGGGGA 62.981 66.667 0.00 0.00 35.26 4.81
2379 4939 2.982130 CAAGGCGTCTACCCTGCT 59.018 61.111 0.00 0.00 31.73 4.24
2565 5125 9.423061 GCCTTTAAAAATATGATTCGCCAATAT 57.577 29.630 0.00 0.00 0.00 1.28
2567 5127 7.271511 TGCCTTTAAAAATATGATTCGCCAAT 58.728 30.769 0.00 0.00 0.00 3.16
2773 5340 7.124901 ACACCATCAACTCAGAGTAGATATTGT 59.875 37.037 2.64 1.52 0.00 2.71
2777 5344 7.482169 AAACACCATCAACTCAGAGTAGATA 57.518 36.000 2.64 0.00 0.00 1.98
2830 5398 3.620488 TGCCATTCCAGATAAACAGTCC 58.380 45.455 0.00 0.00 0.00 3.85
2853 5421 4.329528 GCAAACAGCAAAACAAGACATGAA 59.670 37.500 0.00 0.00 44.79 2.57
2923 5491 2.102252 GCAGGCTAGTGCTTAGTCAGAT 59.898 50.000 0.00 0.00 40.54 2.90
2933 5501 1.242076 CATAATGGGCAGGCTAGTGC 58.758 55.000 0.00 0.00 43.19 4.40
2939 5507 1.000506 CATCAAGCATAATGGGCAGGC 59.999 52.381 0.00 0.00 0.00 4.85
2995 5563 7.028926 TCGAGAATGTAGACAATAGAAGTCC 57.971 40.000 0.00 0.00 36.68 3.85
3018 5586 3.413327 AGCAGATCAGGCAATCATCATC 58.587 45.455 11.35 0.00 0.00 2.92
3032 5600 7.871973 AGTATCAACACATATCAAGAGCAGATC 59.128 37.037 0.00 0.00 0.00 2.75
3067 5635 9.667107 CAAATATCAACTCTAGGGAAGTTAACA 57.333 33.333 8.61 0.00 0.00 2.41
3072 5640 6.313519 TGCAAATATCAACTCTAGGGAAGT 57.686 37.500 0.00 0.00 0.00 3.01
3137 5705 5.710513 AAGCAAATGCATTGAGTACTTCA 57.289 34.783 13.82 0.00 45.16 3.02
3138 5706 8.589629 CATAAAAGCAAATGCATTGAGTACTTC 58.410 33.333 13.82 0.00 45.16 3.01
3425 6000 2.026449 CAGCCCTCTTCTTCTGGACAAT 60.026 50.000 0.00 0.00 0.00 2.71
3445 6020 0.319469 TGTCGAAGTCATTGAGCGCA 60.319 50.000 11.47 0.00 0.00 6.09
3446 6021 0.368227 CTGTCGAAGTCATTGAGCGC 59.632 55.000 0.00 0.00 0.00 5.92
3481 6056 3.614092 GAATCTCACCTTGATCTTGGCA 58.386 45.455 0.00 0.00 0.00 4.92
3503 6078 6.982724 GGAATTAATCATGAAAGAGCCTTTGG 59.017 38.462 0.00 0.00 0.00 3.28
3678 6253 4.082245 CGATTTTGGGGCAAAGATACAACT 60.082 41.667 0.00 0.00 34.72 3.16
3714 6289 5.582269 ACCAATAACAGTGATGAGTGATTCG 59.418 40.000 0.00 0.00 0.00 3.34
3847 6422 0.519077 GCAGACTAACAGCAAGCACC 59.481 55.000 0.00 0.00 0.00 5.01
3854 6429 0.321122 AGGCACAGCAGACTAACAGC 60.321 55.000 0.00 0.00 0.00 4.40
3869 6444 2.671070 GCTGGAGGTAAGCAGGCA 59.329 61.111 0.00 0.00 40.52 4.75
3870 6445 2.512515 CGCTGGAGGTAAGCAGGC 60.513 66.667 0.00 0.00 40.86 4.85
3875 6450 0.323629 TTTGGACCGCTGGAGGTAAG 59.676 55.000 1.50 0.00 46.09 2.34
3958 6533 9.539139 CGATAGTACTCCGTATAACATAAACAG 57.461 37.037 0.00 0.00 0.00 3.16
3968 6543 6.866010 TTTCTTGCGATAGTACTCCGTATA 57.134 37.500 15.87 4.26 39.35 1.47
3969 6544 5.762825 TTTCTTGCGATAGTACTCCGTAT 57.237 39.130 15.87 0.00 39.35 3.06
3982 6557 2.148916 TCGAGCTCTTTTTCTTGCGA 57.851 45.000 12.85 0.00 0.00 5.10
3983 6558 2.949714 TTCGAGCTCTTTTTCTTGCG 57.050 45.000 12.85 0.00 0.00 4.85
4120 7262 7.769044 GGCAAGTTCTATCTTACTTTACCATCA 59.231 37.037 0.00 0.00 32.50 3.07
4176 7646 8.662781 AGTTGAGTATATACATTTGCGTTGAT 57.337 30.769 15.18 0.00 0.00 2.57
4251 8320 8.674263 ACTTATGCCATTGAATTTGTTTTTCA 57.326 26.923 0.00 0.00 0.00 2.69
4342 8420 2.494059 CAGTGGAAGACAACCGTGATT 58.506 47.619 0.00 0.00 0.00 2.57
4367 8445 4.906618 ACCCTATGTCGACAAAATGTCTT 58.093 39.130 24.13 5.75 44.85 3.01
4486 8579 4.072131 GTGTGGTGTAATGAGATGGTTGT 58.928 43.478 0.00 0.00 0.00 3.32
4506 8599 2.217750 TGAAGAACATTGTCACCCGTG 58.782 47.619 0.00 0.00 0.00 4.94
4516 8609 7.227512 CAGAAGGAGTTACTGTTGAAGAACATT 59.772 37.037 0.00 0.00 41.33 2.71
4551 8644 3.065306 GGTGACCCATGACCGTCA 58.935 61.111 3.10 3.10 36.67 4.35
4575 8668 0.250513 GACCTTCGCTGGTTGGATCT 59.749 55.000 0.91 0.00 41.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.