Multiple sequence alignment - TraesCS2D01G379600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G379600 chr2D 100.000 4166 0 0 1 4166 484133714 484129549 0.000000e+00 7694.0
1 TraesCS2D01G379600 chr2D 92.733 633 44 2 3535 4166 168429724 168429093 0.000000e+00 913.0
2 TraesCS2D01G379600 chr2B 89.849 2522 116 39 727 3208 568821254 568818833 0.000000e+00 3110.0
3 TraesCS2D01G379600 chr2B 89.708 583 48 9 138 716 568821896 568821322 0.000000e+00 734.0
4 TraesCS2D01G379600 chr2B 83.945 218 32 3 138 353 235061246 235061030 5.460000e-49 206.0
5 TraesCS2D01G379600 chr2B 97.826 46 1 0 697 742 568821311 568821266 3.450000e-11 80.5
6 TraesCS2D01G379600 chr2A 88.616 1344 58 32 902 2193 628066304 628065004 0.000000e+00 1546.0
7 TraesCS2D01G379600 chr2A 91.785 986 67 11 2194 3172 628064963 628063985 0.000000e+00 1360.0
8 TraesCS2D01G379600 chr2A 92.593 621 44 1 3537 4157 310400659 310400041 0.000000e+00 891.0
9 TraesCS2D01G379600 chr2A 86.739 460 35 7 457 898 628066884 628066433 4.840000e-134 488.0
10 TraesCS2D01G379600 chr2A 88.922 334 36 1 137 470 628067419 628067087 1.080000e-110 411.0
11 TraesCS2D01G379600 chr2A 94.118 68 4 0 3209 3276 628063980 628063913 2.050000e-18 104.0
12 TraesCS2D01G379600 chr3D 93.038 632 44 0 3535 4166 579033069 579032438 0.000000e+00 924.0
13 TraesCS2D01G379600 chr5B 92.563 632 47 0 3535 4166 620310120 620309489 0.000000e+00 907.0
14 TraesCS2D01G379600 chr5D 92.417 633 46 2 3535 4166 396459747 396460378 0.000000e+00 902.0
15 TraesCS2D01G379600 chr5D 92.332 626 47 1 3535 4160 559098623 559099247 0.000000e+00 889.0
16 TraesCS2D01G379600 chr5D 83.556 225 36 1 138 362 216159447 216159670 4.220000e-50 209.0
17 TraesCS2D01G379600 chr6A 92.247 632 49 0 3535 4166 73489997 73490628 0.000000e+00 896.0
18 TraesCS2D01G379600 chr7D 91.930 632 51 0 3535 4166 186322612 186321981 0.000000e+00 885.0
19 TraesCS2D01G379600 chr6D 91.943 633 49 2 3535 4166 287379968 287380599 0.000000e+00 885.0
20 TraesCS2D01G379600 chrUn 98.551 138 2 0 1 138 41826460 41826597 1.160000e-60 244.0
21 TraesCS2D01G379600 chrUn 98.551 138 2 0 1 138 322451256 322451393 1.160000e-60 244.0
22 TraesCS2D01G379600 chrUn 98.551 138 2 0 1 138 340865229 340865366 1.160000e-60 244.0
23 TraesCS2D01G379600 chrUn 83.486 218 33 3 138 353 81428445 81428661 2.540000e-47 200.0
24 TraesCS2D01G379600 chr3A 98.551 138 2 0 1 138 62410828 62410965 1.160000e-60 244.0
25 TraesCS2D01G379600 chr3A 87.500 56 5 1 3452 3507 544164718 544164665 3.480000e-06 63.9
26 TraesCS2D01G379600 chr1B 97.122 139 3 1 1 138 161552015 161552153 2.500000e-57 233.0
27 TraesCS2D01G379600 chr1B 81.223 229 40 3 138 364 286952399 286952626 9.200000e-42 182.0
28 TraesCS2D01G379600 chr1A 83.406 229 34 4 138 364 266878822 266879048 4.220000e-50 209.0
29 TraesCS2D01G379600 chr7A 83.486 218 33 3 138 353 14487148 14486932 2.540000e-47 200.0
30 TraesCS2D01G379600 chr4A 81.579 228 41 1 138 364 30189513 30189286 1.980000e-43 187.0
31 TraesCS2D01G379600 chr3B 100.000 71 0 0 1 71 795456154 795456224 9.400000e-27 132.0
32 TraesCS2D01G379600 chr3B 80.978 184 18 4 2502 2675 356860120 356860296 3.380000e-26 130.0
33 TraesCS2D01G379600 chr3B 95.714 70 3 0 69 138 795456636 795456705 3.400000e-21 113.0
34 TraesCS2D01G379600 chr4B 85.915 71 3 1 3431 3494 142038168 142038238 7.470000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G379600 chr2D 484129549 484133714 4165 True 7694.000000 7694 100.000 1 4166 1 chr2D.!!$R2 4165
1 TraesCS2D01G379600 chr2D 168429093 168429724 631 True 913.000000 913 92.733 3535 4166 1 chr2D.!!$R1 631
2 TraesCS2D01G379600 chr2B 568818833 568821896 3063 True 1308.166667 3110 92.461 138 3208 3 chr2B.!!$R2 3070
3 TraesCS2D01G379600 chr2A 310400041 310400659 618 True 891.000000 891 92.593 3537 4157 1 chr2A.!!$R1 620
4 TraesCS2D01G379600 chr2A 628063913 628067419 3506 True 781.800000 1546 90.036 137 3276 5 chr2A.!!$R2 3139
5 TraesCS2D01G379600 chr3D 579032438 579033069 631 True 924.000000 924 93.038 3535 4166 1 chr3D.!!$R1 631
6 TraesCS2D01G379600 chr5B 620309489 620310120 631 True 907.000000 907 92.563 3535 4166 1 chr5B.!!$R1 631
7 TraesCS2D01G379600 chr5D 396459747 396460378 631 False 902.000000 902 92.417 3535 4166 1 chr5D.!!$F2 631
8 TraesCS2D01G379600 chr5D 559098623 559099247 624 False 889.000000 889 92.332 3535 4160 1 chr5D.!!$F3 625
9 TraesCS2D01G379600 chr6A 73489997 73490628 631 False 896.000000 896 92.247 3535 4166 1 chr6A.!!$F1 631
10 TraesCS2D01G379600 chr7D 186321981 186322612 631 True 885.000000 885 91.930 3535 4166 1 chr7D.!!$R1 631
11 TraesCS2D01G379600 chr6D 287379968 287380599 631 False 885.000000 885 91.943 3535 4166 1 chr6D.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 794 0.255890 GATGCGGCCCCATATATGGT 59.744 55.0 26.59 9.43 46.65 3.55 F
1033 1449 0.032540 CCAAACAAAGGCAGGCACTC 59.967 55.0 0.00 0.00 34.60 3.51 F
1047 1463 0.179215 GCACTCGATTTCCAAGCGTG 60.179 55.0 0.00 0.00 41.73 5.34 F
1050 1466 0.391130 CTCGATTTCCAAGCGTGGGA 60.391 55.0 19.08 7.31 46.01 4.37 F
1236 1667 0.540597 GCCCAAGGAACCTTCTGCTT 60.541 55.0 2.84 0.00 33.42 3.91 F
2247 2754 0.590195 GCTTAGCATCTTGGATGCCG 59.410 55.0 23.37 15.38 45.59 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 2433 0.165944 GAGCGCACCACAACATACAC 59.834 55.000 11.47 0.00 0.0 2.90 R
2319 2827 0.169672 CGGTATGAACACGTCGGACT 59.830 55.000 6.57 0.00 0.0 3.85 R
2851 3359 0.325203 GGTGCTCCTTCTCCCTCTCT 60.325 60.000 0.00 0.00 0.0 3.10 R
3022 3530 5.609423 AGACAATTCCTCTGCAGATCATAC 58.391 41.667 18.63 4.71 0.0 2.39 R
3084 3596 0.748729 GACCCAACCGACCACAACAA 60.749 55.000 0.00 0.00 0.0 2.83 R
3550 4063 0.035439 CAGGGGATGTACAAAGGCGT 60.035 55.000 0.00 0.00 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.808321 ATCTTACCTTAGTGTAGATTGCCA 57.192 37.500 0.00 0.00 29.39 4.92
26 27 6.808321 TCTTACCTTAGTGTAGATTGCCAT 57.192 37.500 0.00 0.00 0.00 4.40
27 28 6.817184 TCTTACCTTAGTGTAGATTGCCATC 58.183 40.000 0.00 0.00 0.00 3.51
28 29 6.611642 TCTTACCTTAGTGTAGATTGCCATCT 59.388 38.462 5.52 5.52 42.83 2.90
29 30 5.283457 ACCTTAGTGTAGATTGCCATCTC 57.717 43.478 3.08 0.00 40.53 2.75
30 31 4.965532 ACCTTAGTGTAGATTGCCATCTCT 59.034 41.667 3.08 0.00 40.53 3.10
31 32 5.163364 ACCTTAGTGTAGATTGCCATCTCTG 60.163 44.000 3.08 0.00 40.53 3.35
32 33 3.191078 AGTGTAGATTGCCATCTCTGC 57.809 47.619 3.08 0.00 40.53 4.26
33 34 2.502947 AGTGTAGATTGCCATCTCTGCA 59.497 45.455 3.08 0.16 40.53 4.41
34 35 2.871022 GTGTAGATTGCCATCTCTGCAG 59.129 50.000 7.63 7.63 40.53 4.41
35 36 2.767960 TGTAGATTGCCATCTCTGCAGA 59.232 45.455 17.19 17.19 40.53 4.26
36 37 3.198417 TGTAGATTGCCATCTCTGCAGAA 59.802 43.478 18.85 9.34 40.53 3.02
37 38 3.579534 AGATTGCCATCTCTGCAGAAT 57.420 42.857 18.85 11.25 40.35 2.40
38 39 3.215151 AGATTGCCATCTCTGCAGAATG 58.785 45.455 18.85 20.86 40.35 2.67
39 40 2.502142 TTGCCATCTCTGCAGAATGT 57.498 45.000 24.56 11.71 40.35 2.71
40 41 1.746470 TGCCATCTCTGCAGAATGTG 58.254 50.000 24.56 19.47 39.31 3.21
41 42 1.279846 TGCCATCTCTGCAGAATGTGA 59.720 47.619 24.56 17.41 39.31 3.58
42 43 2.290450 TGCCATCTCTGCAGAATGTGAA 60.290 45.455 24.56 14.92 39.31 3.18
43 44 2.355132 GCCATCTCTGCAGAATGTGAAG 59.645 50.000 24.56 14.63 39.31 3.02
44 45 3.607741 CCATCTCTGCAGAATGTGAAGT 58.392 45.455 24.56 5.12 39.31 3.01
45 46 4.008330 CCATCTCTGCAGAATGTGAAGTT 58.992 43.478 24.56 6.44 39.31 2.66
46 47 5.181009 CCATCTCTGCAGAATGTGAAGTTA 58.819 41.667 24.56 1.92 39.31 2.24
47 48 5.293814 CCATCTCTGCAGAATGTGAAGTTAG 59.706 44.000 24.56 10.13 39.31 2.34
48 49 5.474578 TCTCTGCAGAATGTGAAGTTAGT 57.525 39.130 18.85 0.00 39.31 2.24
49 50 5.858381 TCTCTGCAGAATGTGAAGTTAGTT 58.142 37.500 18.85 0.00 39.31 2.24
50 51 5.698089 TCTCTGCAGAATGTGAAGTTAGTTG 59.302 40.000 18.85 0.00 39.31 3.16
51 52 5.368145 TCTGCAGAATGTGAAGTTAGTTGT 58.632 37.500 15.67 0.00 39.31 3.32
52 53 5.237127 TCTGCAGAATGTGAAGTTAGTTGTG 59.763 40.000 15.67 0.00 39.31 3.33
53 54 4.881273 TGCAGAATGTGAAGTTAGTTGTGT 59.119 37.500 0.00 0.00 39.31 3.72
54 55 6.052360 TGCAGAATGTGAAGTTAGTTGTGTA 58.948 36.000 0.00 0.00 39.31 2.90
55 56 6.202762 TGCAGAATGTGAAGTTAGTTGTGTAG 59.797 38.462 0.00 0.00 39.31 2.74
56 57 6.202954 GCAGAATGTGAAGTTAGTTGTGTAGT 59.797 38.462 0.00 0.00 39.31 2.73
57 58 7.254795 GCAGAATGTGAAGTTAGTTGTGTAGTT 60.255 37.037 0.00 0.00 39.31 2.24
58 59 8.612619 CAGAATGTGAAGTTAGTTGTGTAGTTT 58.387 33.333 0.00 0.00 0.00 2.66
59 60 8.827677 AGAATGTGAAGTTAGTTGTGTAGTTTC 58.172 33.333 0.00 0.00 0.00 2.78
60 61 8.732746 AATGTGAAGTTAGTTGTGTAGTTTCT 57.267 30.769 0.00 0.00 0.00 2.52
61 62 8.732746 ATGTGAAGTTAGTTGTGTAGTTTCTT 57.267 30.769 0.00 0.00 0.00 2.52
62 63 9.826574 ATGTGAAGTTAGTTGTGTAGTTTCTTA 57.173 29.630 0.00 0.00 0.00 2.10
63 64 9.090692 TGTGAAGTTAGTTGTGTAGTTTCTTAC 57.909 33.333 0.00 0.00 0.00 2.34
64 65 9.310716 GTGAAGTTAGTTGTGTAGTTTCTTACT 57.689 33.333 0.00 0.00 41.04 2.24
65 66 9.880157 TGAAGTTAGTTGTGTAGTTTCTTACTT 57.120 29.630 0.00 0.00 38.33 2.24
93 94 4.647424 GGTTCATGACCTTTCACACAAA 57.353 40.909 0.00 0.00 45.55 2.83
94 95 5.004922 GGTTCATGACCTTTCACACAAAA 57.995 39.130 0.00 0.00 45.55 2.44
95 96 5.600696 GGTTCATGACCTTTCACACAAAAT 58.399 37.500 0.00 0.00 45.55 1.82
96 97 6.048509 GGTTCATGACCTTTCACACAAAATT 58.951 36.000 0.00 0.00 45.55 1.82
97 98 6.200854 GGTTCATGACCTTTCACACAAAATTC 59.799 38.462 0.00 0.00 45.55 2.17
98 99 6.462552 TCATGACCTTTCACACAAAATTCA 57.537 33.333 0.00 0.00 33.38 2.57
99 100 7.053316 TCATGACCTTTCACACAAAATTCAT 57.947 32.000 0.00 0.00 33.38 2.57
100 101 6.924612 TCATGACCTTTCACACAAAATTCATG 59.075 34.615 0.00 0.00 38.44 3.07
101 102 6.462552 TGACCTTTCACACAAAATTCATGA 57.537 33.333 0.00 0.00 0.00 3.07
102 103 6.871844 TGACCTTTCACACAAAATTCATGAA 58.128 32.000 11.26 11.26 0.00 2.57
103 104 7.326454 TGACCTTTCACACAAAATTCATGAAA 58.674 30.769 13.09 0.00 37.03 2.69
104 105 7.821359 TGACCTTTCACACAAAATTCATGAAAA 59.179 29.630 13.09 0.00 38.45 2.29
105 106 8.558973 ACCTTTCACACAAAATTCATGAAAAA 57.441 26.923 13.09 4.29 38.45 1.94
120 121 3.199764 AAAAATCCTGCAGCAACGC 57.800 47.368 8.66 0.00 0.00 4.84
121 122 0.664166 AAAAATCCTGCAGCAACGCG 60.664 50.000 8.66 3.53 33.35 6.01
122 123 3.615536 AAATCCTGCAGCAACGCGC 62.616 57.895 8.66 0.00 42.91 6.86
230 231 2.803956 TGTCGGAGTTCACCTCTATGT 58.196 47.619 0.00 0.00 40.30 2.29
241 242 6.156949 AGTTCACCTCTATGTGATTACACCAT 59.843 38.462 0.00 0.00 44.27 3.55
244 245 6.041637 TCACCTCTATGTGATTACACCATACC 59.958 42.308 0.00 0.00 45.40 2.73
257 258 1.483415 ACCATACCGTAGTTGCCGAAT 59.517 47.619 0.00 0.00 0.00 3.34
269 270 2.270352 TGCCGAATTGAGACCAAACT 57.730 45.000 0.00 0.00 35.67 2.66
302 303 0.914551 CTCGGCGATAAACACGTCTG 59.085 55.000 11.27 0.00 33.06 3.51
321 322 1.009829 GCGCATCAATCGGTTTCTCT 58.990 50.000 0.30 0.00 0.00 3.10
322 323 1.398390 GCGCATCAATCGGTTTCTCTT 59.602 47.619 0.30 0.00 0.00 2.85
360 361 1.483827 TCTGCCATTCGAGCTTCTGAT 59.516 47.619 0.00 0.00 0.00 2.90
368 369 1.135373 TCGAGCTTCTGATGACGGTTC 60.135 52.381 0.00 0.00 0.00 3.62
426 427 1.026718 ATCTGCTTAAGGTGTGCCGC 61.027 55.000 4.29 0.00 40.50 6.53
466 682 3.834489 ACATGTGCCAATAGAGAGAGG 57.166 47.619 0.00 0.00 0.00 3.69
490 706 1.284785 CACTCTTTAAGGCCCCCATCA 59.715 52.381 0.00 0.00 0.00 3.07
520 736 1.296056 ACAACCGACCATAACTGCGC 61.296 55.000 0.00 0.00 0.00 6.09
530 752 1.406898 CATAACTGCGCCTCAGAGAGA 59.593 52.381 4.18 0.00 45.72 3.10
563 794 0.255890 GATGCGGCCCCATATATGGT 59.744 55.000 26.59 9.43 46.65 3.55
565 796 1.590591 TGCGGCCCCATATATGGTAT 58.409 50.000 26.59 0.00 46.65 2.73
592 823 7.948278 ACTTATTTCTTATCGAAGGAATCCG 57.052 36.000 0.00 0.00 39.70 4.18
595 826 4.748277 TTCTTATCGAAGGAATCCGGTT 57.252 40.909 0.00 0.00 33.09 4.44
608 839 5.736486 GAATCCGGTTCCATCTTTCTTAC 57.264 43.478 0.00 0.00 0.00 2.34
612 843 3.453353 CCGGTTCCATCTTTCTTACCCTA 59.547 47.826 0.00 0.00 0.00 3.53
618 849 4.841813 TCCATCTTTCTTACCCTACACACA 59.158 41.667 0.00 0.00 0.00 3.72
621 852 7.181305 TCCATCTTTCTTACCCTACACACATTA 59.819 37.037 0.00 0.00 0.00 1.90
634 865 6.477688 CCTACACACATTACTTAATACACCCG 59.522 42.308 0.00 0.00 0.00 5.28
704 968 0.463474 GTGCAAGCTCATCTCTCCCC 60.463 60.000 0.00 0.00 0.00 4.81
750 1041 4.524053 GGTAAGTATTAACTGCCTGCCTT 58.476 43.478 0.00 0.00 34.77 4.35
751 1042 4.948004 GGTAAGTATTAACTGCCTGCCTTT 59.052 41.667 0.00 0.00 34.77 3.11
753 1044 3.621558 AGTATTAACTGCCTGCCTTTCC 58.378 45.455 0.00 0.00 33.57 3.13
756 1047 0.609131 TAACTGCCTGCCTTTCCTGC 60.609 55.000 0.00 0.00 0.00 4.85
759 1050 2.283460 GCCTGCCTTTCCTGCCTT 60.283 61.111 0.00 0.00 0.00 4.35
802 1093 6.426328 GCTCTCGATATTCCAGATGTCAAAAT 59.574 38.462 0.00 0.00 0.00 1.82
822 1113 5.329191 AATATTTGATGATCCCTCTGGCA 57.671 39.130 0.00 0.00 0.00 4.92
847 1138 1.810755 TGCTCTCATGCAGCAAAGAAG 59.189 47.619 14.78 3.17 44.02 2.85
894 1185 2.415512 GCTGCCGTTAACACTTTCCTAG 59.584 50.000 6.39 0.00 0.00 3.02
899 1190 6.054295 TGCCGTTAACACTTTCCTAGTTAAA 58.946 36.000 6.39 0.00 38.85 1.52
900 1191 6.541641 TGCCGTTAACACTTTCCTAGTTAAAA 59.458 34.615 6.39 0.00 38.85 1.52
985 1401 4.381718 GCGAATATATATATCCCTCCGCCC 60.382 50.000 5.70 0.00 0.00 6.13
986 1402 4.159879 CGAATATATATATCCCTCCGCCCC 59.840 50.000 5.70 0.00 0.00 5.80
1016 1432 0.882927 CTTTCCGAAGCACCGAACCA 60.883 55.000 0.00 0.00 0.00 3.67
1033 1449 0.032540 CCAAACAAAGGCAGGCACTC 59.967 55.000 0.00 0.00 34.60 3.51
1034 1450 0.318107 CAAACAAAGGCAGGCACTCG 60.318 55.000 0.00 0.00 34.60 4.18
1035 1451 0.465460 AAACAAAGGCAGGCACTCGA 60.465 50.000 0.00 0.00 34.60 4.04
1036 1452 0.250901 AACAAAGGCAGGCACTCGAT 60.251 50.000 0.00 0.00 34.60 3.59
1037 1453 0.250901 ACAAAGGCAGGCACTCGATT 60.251 50.000 0.00 0.00 34.60 3.34
1038 1454 0.883833 CAAAGGCAGGCACTCGATTT 59.116 50.000 0.00 0.00 34.60 2.17
1039 1455 1.135575 CAAAGGCAGGCACTCGATTTC 60.136 52.381 0.00 0.00 34.60 2.17
1040 1456 0.678048 AAGGCAGGCACTCGATTTCC 60.678 55.000 0.00 0.00 34.60 3.13
1041 1457 1.377202 GGCAGGCACTCGATTTCCA 60.377 57.895 0.00 0.00 34.60 3.53
1042 1458 0.960364 GGCAGGCACTCGATTTCCAA 60.960 55.000 0.00 0.00 34.60 3.53
1043 1459 0.449388 GCAGGCACTCGATTTCCAAG 59.551 55.000 0.00 0.00 34.60 3.61
1044 1460 0.449388 CAGGCACTCGATTTCCAAGC 59.551 55.000 0.00 0.00 34.60 4.01
1045 1461 1.021390 AGGCACTCGATTTCCAAGCG 61.021 55.000 0.00 0.00 42.53 4.68
1046 1462 1.298859 GGCACTCGATTTCCAAGCGT 61.299 55.000 0.00 0.00 41.73 5.07
1047 1463 0.179215 GCACTCGATTTCCAAGCGTG 60.179 55.000 0.00 0.00 41.73 5.34
1049 1465 0.673644 ACTCGATTTCCAAGCGTGGG 60.674 55.000 19.08 2.10 46.01 4.61
1050 1466 0.391130 CTCGATTTCCAAGCGTGGGA 60.391 55.000 19.08 7.31 46.01 4.37
1051 1467 0.391130 TCGATTTCCAAGCGTGGGAG 60.391 55.000 19.08 6.19 46.01 4.30
1052 1468 1.803289 GATTTCCAAGCGTGGGAGC 59.197 57.895 19.08 7.12 46.01 4.70
1053 1469 1.982073 GATTTCCAAGCGTGGGAGCG 61.982 60.000 19.08 0.00 46.01 5.03
1054 1470 4.697756 TTCCAAGCGTGGGAGCGG 62.698 66.667 19.08 0.00 46.01 5.52
1176 1607 1.828768 GGATCTGTCCAGGAGGCTG 59.171 63.158 0.00 0.00 44.42 4.85
1236 1667 0.540597 GCCCAAGGAACCTTCTGCTT 60.541 55.000 2.84 0.00 33.42 3.91
1272 1703 4.757692 TCCTCTTTCTTCCTCTCTTTCCT 58.242 43.478 0.00 0.00 0.00 3.36
1285 1716 4.884247 TCTCTTTCCTTCTCCTTCGTTTC 58.116 43.478 0.00 0.00 0.00 2.78
1297 1728 5.011738 TCTCCTTCGTTTCTTTCTGTATGGT 59.988 40.000 0.00 0.00 0.00 3.55
1305 1736 5.426689 TTCTTTCTGTATGGTGCTGATCT 57.573 39.130 0.00 0.00 0.00 2.75
1339 1770 4.554723 CGGGTGTTGATCTTTCTGTGTTTC 60.555 45.833 0.00 0.00 0.00 2.78
1430 1861 6.937436 AAGTTTCGATTTCTTACTTGTGGT 57.063 33.333 0.00 0.00 0.00 4.16
1431 1862 8.981647 GTAAGTTTCGATTTCTTACTTGTGGTA 58.018 33.333 18.76 0.00 39.83 3.25
1432 1863 8.617290 AAGTTTCGATTTCTTACTTGTGGTAT 57.383 30.769 0.00 0.00 0.00 2.73
1433 1864 8.252964 AGTTTCGATTTCTTACTTGTGGTATC 57.747 34.615 0.00 0.00 0.00 2.24
1434 1865 7.876068 AGTTTCGATTTCTTACTTGTGGTATCA 59.124 33.333 0.00 0.00 0.00 2.15
1435 1866 8.500773 GTTTCGATTTCTTACTTGTGGTATCAA 58.499 33.333 0.00 0.00 0.00 2.57
1472 1903 7.368059 ACTCTGTTTTTATCGAAATGGAAACC 58.632 34.615 0.00 0.00 0.00 3.27
1501 1932 1.270094 GCAGGGGCGTTTTAGCTTTTT 60.270 47.619 0.00 0.00 37.29 1.94
1554 1986 8.606830 AGTTCCTCTAGAATTTGGTTTGTAGAT 58.393 33.333 0.00 0.00 36.69 1.98
1555 1987 8.884726 GTTCCTCTAGAATTTGGTTTGTAGATC 58.115 37.037 0.00 0.00 36.69 2.75
1556 1988 7.565680 TCCTCTAGAATTTGGTTTGTAGATCC 58.434 38.462 0.00 0.00 32.82 3.36
1557 1989 7.182026 TCCTCTAGAATTTGGTTTGTAGATCCA 59.818 37.037 0.00 0.00 32.82 3.41
1560 1992 9.177608 TCTAGAATTTGGTTTGTAGATCCAATG 57.822 33.333 0.00 0.00 40.28 2.82
1579 2011 6.071616 TCCAATGTTGAGCCCAAAGTAAATAC 60.072 38.462 0.00 0.00 33.49 1.89
1580 2012 6.295011 CCAATGTTGAGCCCAAAGTAAATACA 60.295 38.462 0.00 0.00 33.49 2.29
1671 2104 6.787458 TGTATTTATGGCTCTCTGGATCCTTA 59.213 38.462 14.23 0.00 0.00 2.69
1673 2106 6.770286 TTTATGGCTCTCTGGATCCTTAAT 57.230 37.500 14.23 0.00 31.82 1.40
1674 2107 7.872061 TTTATGGCTCTCTGGATCCTTAATA 57.128 36.000 14.23 0.00 31.82 0.98
1675 2108 5.753721 ATGGCTCTCTGGATCCTTAATAC 57.246 43.478 14.23 0.00 0.00 1.89
1746 2179 7.437748 ACTACTGTAGAAGCATATTTAGCTGG 58.562 38.462 21.01 0.00 42.53 4.85
1848 2288 3.002656 AGGCAGCATCGATATTTGAAACG 59.997 43.478 0.00 0.00 0.00 3.60
1867 2307 3.451526 ACGACACATGCACATGATCTAG 58.548 45.455 17.19 6.90 41.20 2.43
1878 2318 4.318618 GCACATGATCTAGCAATGTCTTCG 60.319 45.833 0.00 0.00 0.00 3.79
1910 2350 5.428184 AGTATTGAGCTGCTTCTAGGTTT 57.572 39.130 2.53 0.00 0.00 3.27
1917 2362 2.675348 GCTGCTTCTAGGTTTGTGCTAG 59.325 50.000 0.00 0.00 0.00 3.42
2124 2591 1.130561 GGCGAACATGTAGCTTTGGAC 59.869 52.381 20.82 0.00 0.00 4.02
2247 2754 0.590195 GCTTAGCATCTTGGATGCCG 59.410 55.000 23.37 15.38 45.59 5.69
2319 2827 0.945813 AAACGACGCAAAATTCCGGA 59.054 45.000 0.00 0.00 0.00 5.14
2356 2864 2.159282 ACCGGTACAATTCAGACTAGCG 60.159 50.000 4.49 0.00 0.00 4.26
2360 2868 4.207224 CGGTACAATTCAGACTAGCGAATG 59.793 45.833 0.00 2.61 33.08 2.67
2361 2869 5.109903 GGTACAATTCAGACTAGCGAATGT 58.890 41.667 0.00 6.81 32.27 2.71
2369 2877 1.751924 GACTAGCGAATGTCCCTGTCT 59.248 52.381 0.00 0.00 0.00 3.41
2416 2924 3.256383 CAGGAATGTGATTCAGTGCCAAA 59.744 43.478 0.00 0.00 41.03 3.28
2474 2982 1.065418 TCTGAAGGCGAAGGGAAATCC 60.065 52.381 0.00 0.00 0.00 3.01
2596 3104 1.885850 GTGCCGTTCTGTCACCGTT 60.886 57.895 0.00 0.00 0.00 4.44
2613 3121 1.804601 GTTTTCGGTCTGTTCGGGAT 58.195 50.000 0.00 0.00 0.00 3.85
2675 3183 1.613630 AGGCTTGGACCGGATCAGT 60.614 57.895 9.46 0.00 33.69 3.41
2676 3184 1.201429 AGGCTTGGACCGGATCAGTT 61.201 55.000 9.46 0.00 33.69 3.16
2851 3359 4.684134 GGCTTGCCTGGCTGGGAA 62.684 66.667 21.03 16.09 44.14 3.97
3022 3530 1.293924 CCTGATGAGCAAACGCCTAG 58.706 55.000 0.00 0.00 0.00 3.02
3038 3546 3.161067 GCCTAGTATGATCTGCAGAGGA 58.839 50.000 22.96 11.20 0.00 3.71
3084 3596 1.981256 ACATGAAGTTCCGGCAAACT 58.019 45.000 0.00 2.76 41.20 2.66
3086 3598 2.034558 ACATGAAGTTCCGGCAAACTTG 59.965 45.455 22.15 13.23 46.69 3.16
3114 3626 4.038282 GGTCGGTTGGGTCAAGTTAAATTT 59.962 41.667 0.00 0.00 0.00 1.82
3186 3699 0.735632 TTTGCCATGAAATTCGCCGC 60.736 50.000 0.00 0.00 0.00 6.53
3216 3729 2.029073 CACGGCGGAGTCTGTGTT 59.971 61.111 13.24 0.00 36.61 3.32
3221 3734 1.870580 CGGCGGAGTCTGTGTTGTTTA 60.871 52.381 0.00 0.00 0.00 2.01
3222 3735 1.529865 GGCGGAGTCTGTGTTGTTTAC 59.470 52.381 0.00 0.00 0.00 2.01
3224 3737 2.221055 GCGGAGTCTGTGTTGTTTACTG 59.779 50.000 0.00 0.00 0.00 2.74
3276 3789 4.202284 TGGTTGCGGGGAAGATATAGTTAC 60.202 45.833 0.00 0.00 0.00 2.50
3277 3790 3.928727 TGCGGGGAAGATATAGTTACG 57.071 47.619 0.00 0.00 0.00 3.18
3278 3791 2.029649 TGCGGGGAAGATATAGTTACGC 60.030 50.000 0.00 0.00 44.14 4.42
3279 3792 2.230750 GCGGGGAAGATATAGTTACGCT 59.769 50.000 0.00 0.00 41.10 5.07
3280 3793 3.672781 GCGGGGAAGATATAGTTACGCTC 60.673 52.174 0.00 0.00 41.10 5.03
3281 3794 3.425892 CGGGGAAGATATAGTTACGCTCG 60.426 52.174 0.00 0.00 0.00 5.03
3282 3795 3.119566 GGGGAAGATATAGTTACGCTCGG 60.120 52.174 0.00 0.00 0.00 4.63
3283 3796 3.119566 GGGAAGATATAGTTACGCTCGGG 60.120 52.174 0.00 0.00 0.00 5.14
3284 3797 3.755378 GGAAGATATAGTTACGCTCGGGA 59.245 47.826 0.00 0.00 0.00 5.14
3285 3798 4.217118 GGAAGATATAGTTACGCTCGGGAA 59.783 45.833 0.00 0.00 0.00 3.97
3286 3799 4.762956 AGATATAGTTACGCTCGGGAAC 57.237 45.455 0.00 0.00 0.00 3.62
3302 3815 4.067972 GGGAACGATTAGGAAGTATGCA 57.932 45.455 0.00 0.00 0.00 3.96
3303 3816 4.642429 GGGAACGATTAGGAAGTATGCAT 58.358 43.478 3.79 3.79 0.00 3.96
3304 3817 5.790593 GGGAACGATTAGGAAGTATGCATA 58.209 41.667 1.16 1.16 0.00 3.14
3305 3818 6.407202 GGGAACGATTAGGAAGTATGCATAT 58.593 40.000 10.16 0.00 0.00 1.78
3306 3819 6.313905 GGGAACGATTAGGAAGTATGCATATG 59.686 42.308 10.16 0.00 0.00 1.78
3307 3820 6.313905 GGAACGATTAGGAAGTATGCATATGG 59.686 42.308 10.16 0.00 0.00 2.74
3308 3821 6.605471 ACGATTAGGAAGTATGCATATGGA 57.395 37.500 10.16 1.06 0.00 3.41
3309 3822 6.634805 ACGATTAGGAAGTATGCATATGGAG 58.365 40.000 10.16 0.00 0.00 3.86
3310 3823 5.521735 CGATTAGGAAGTATGCATATGGAGC 59.478 44.000 10.16 0.00 0.00 4.70
3320 3833 4.847990 TGCATATGGAGCATGGATATGA 57.152 40.909 4.56 0.00 37.02 2.15
3321 3834 5.182169 TGCATATGGAGCATGGATATGAA 57.818 39.130 4.56 0.00 37.02 2.57
3322 3835 5.190677 TGCATATGGAGCATGGATATGAAG 58.809 41.667 4.56 0.00 37.02 3.02
3323 3836 4.579340 GCATATGGAGCATGGATATGAAGG 59.421 45.833 4.56 0.00 36.36 3.46
3324 3837 3.733883 ATGGAGCATGGATATGAAGGG 57.266 47.619 0.00 0.00 36.36 3.95
3325 3838 2.421725 TGGAGCATGGATATGAAGGGT 58.578 47.619 0.00 0.00 36.36 4.34
3326 3839 2.107031 TGGAGCATGGATATGAAGGGTG 59.893 50.000 0.00 0.00 36.36 4.61
3327 3840 2.107204 GGAGCATGGATATGAAGGGTGT 59.893 50.000 0.00 0.00 36.36 4.16
3328 3841 3.406764 GAGCATGGATATGAAGGGTGTC 58.593 50.000 0.00 0.00 36.36 3.67
3329 3842 2.146342 GCATGGATATGAAGGGTGTCG 58.854 52.381 0.00 0.00 36.36 4.35
3330 3843 2.224281 GCATGGATATGAAGGGTGTCGA 60.224 50.000 0.00 0.00 36.36 4.20
3331 3844 3.657634 CATGGATATGAAGGGTGTCGAG 58.342 50.000 0.00 0.00 36.36 4.04
3332 3845 2.039418 TGGATATGAAGGGTGTCGAGG 58.961 52.381 0.00 0.00 0.00 4.63
3333 3846 1.270358 GGATATGAAGGGTGTCGAGGC 60.270 57.143 0.00 0.00 0.00 4.70
3334 3847 0.389391 ATATGAAGGGTGTCGAGGCG 59.611 55.000 0.00 0.00 0.00 5.52
3335 3848 0.681887 TATGAAGGGTGTCGAGGCGA 60.682 55.000 0.00 0.00 0.00 5.54
3336 3849 1.330655 ATGAAGGGTGTCGAGGCGAT 61.331 55.000 0.00 0.00 38.42 4.58
3337 3850 1.519455 GAAGGGTGTCGAGGCGATG 60.519 63.158 0.00 0.00 38.42 3.84
3338 3851 3.665675 AAGGGTGTCGAGGCGATGC 62.666 63.158 0.00 0.00 38.42 3.91
3351 3864 2.449548 CGATGCGCAAACTCAGAGT 58.550 52.632 17.11 0.00 0.00 3.24
3352 3865 0.792640 CGATGCGCAAACTCAGAGTT 59.207 50.000 17.11 10.27 40.80 3.01
3365 3878 6.674694 AACTCAGAGTTTGCATATTAGCTG 57.325 37.500 10.27 0.00 34.11 4.24
3366 3879 4.574013 ACTCAGAGTTTGCATATTAGCTGC 59.426 41.667 0.00 0.00 40.10 5.25
3367 3880 3.879295 TCAGAGTTTGCATATTAGCTGCC 59.121 43.478 0.00 0.00 38.89 4.85
3368 3881 3.881688 CAGAGTTTGCATATTAGCTGCCT 59.118 43.478 0.00 0.00 38.89 4.75
3369 3882 4.024218 CAGAGTTTGCATATTAGCTGCCTC 60.024 45.833 0.00 0.00 38.89 4.70
3370 3883 4.133078 GAGTTTGCATATTAGCTGCCTCT 58.867 43.478 0.00 0.00 38.89 3.69
3371 3884 5.070981 AGAGTTTGCATATTAGCTGCCTCTA 59.929 40.000 0.00 0.00 35.43 2.43
3372 3885 5.874093 AGTTTGCATATTAGCTGCCTCTAT 58.126 37.500 0.00 0.00 38.89 1.98
3373 3886 7.009179 AGTTTGCATATTAGCTGCCTCTATA 57.991 36.000 0.00 0.00 38.89 1.31
3374 3887 7.628234 AGTTTGCATATTAGCTGCCTCTATAT 58.372 34.615 0.00 0.00 38.89 0.86
3375 3888 7.768120 AGTTTGCATATTAGCTGCCTCTATATC 59.232 37.037 0.00 0.00 38.89 1.63
3376 3889 5.836347 TGCATATTAGCTGCCTCTATATCG 58.164 41.667 0.00 0.00 38.89 2.92
3377 3890 5.360999 TGCATATTAGCTGCCTCTATATCGT 59.639 40.000 0.00 0.00 38.89 3.73
3378 3891 5.689514 GCATATTAGCTGCCTCTATATCGTG 59.310 44.000 0.00 0.00 33.44 4.35
3379 3892 4.727507 ATTAGCTGCCTCTATATCGTGG 57.272 45.455 0.00 0.00 0.00 4.94
3380 3893 2.002505 AGCTGCCTCTATATCGTGGT 57.997 50.000 0.00 0.00 0.00 4.16
3381 3894 3.156288 AGCTGCCTCTATATCGTGGTA 57.844 47.619 0.00 0.00 0.00 3.25
3382 3895 3.702792 AGCTGCCTCTATATCGTGGTAT 58.297 45.455 0.00 0.00 0.00 2.73
3383 3896 3.697045 AGCTGCCTCTATATCGTGGTATC 59.303 47.826 0.00 0.00 0.00 2.24
3384 3897 3.181485 GCTGCCTCTATATCGTGGTATCC 60.181 52.174 0.00 0.00 0.00 2.59
3385 3898 4.017126 CTGCCTCTATATCGTGGTATCCA 58.983 47.826 0.00 0.00 0.00 3.41
3386 3899 4.610333 TGCCTCTATATCGTGGTATCCAT 58.390 43.478 0.00 0.00 35.28 3.41
3387 3900 5.023452 TGCCTCTATATCGTGGTATCCATT 58.977 41.667 0.00 0.00 35.28 3.16
3388 3901 5.483937 TGCCTCTATATCGTGGTATCCATTT 59.516 40.000 0.00 0.00 35.28 2.32
3389 3902 6.666113 TGCCTCTATATCGTGGTATCCATTTA 59.334 38.462 0.00 0.00 35.28 1.40
3390 3903 7.344612 TGCCTCTATATCGTGGTATCCATTTAT 59.655 37.037 0.00 0.00 35.28 1.40
3391 3904 7.653713 GCCTCTATATCGTGGTATCCATTTATG 59.346 40.741 0.00 0.00 35.28 1.90
3409 3922 8.370493 CATTTATGGATGATATATCGTGGACC 57.630 38.462 12.25 7.98 0.00 4.46
3410 3923 7.733773 TTTATGGATGATATATCGTGGACCT 57.266 36.000 12.25 1.72 0.00 3.85
3411 3924 5.604758 ATGGATGATATATCGTGGACCTG 57.395 43.478 12.25 0.00 0.00 4.00
3412 3925 3.195610 TGGATGATATATCGTGGACCTGC 59.804 47.826 12.25 0.00 0.00 4.85
3413 3926 3.430929 GGATGATATATCGTGGACCTGCC 60.431 52.174 12.25 1.98 37.10 4.85
3414 3927 2.889512 TGATATATCGTGGACCTGCCT 58.110 47.619 8.19 0.00 37.63 4.75
3415 3928 2.826128 TGATATATCGTGGACCTGCCTC 59.174 50.000 8.19 0.00 37.63 4.70
3416 3929 2.677542 TATATCGTGGACCTGCCTCT 57.322 50.000 0.00 0.00 37.63 3.69
3417 3930 2.677542 ATATCGTGGACCTGCCTCTA 57.322 50.000 0.00 0.00 37.63 2.43
3418 3931 2.677542 TATCGTGGACCTGCCTCTAT 57.322 50.000 0.00 0.00 37.63 1.98
3419 3932 2.677542 ATCGTGGACCTGCCTCTATA 57.322 50.000 0.00 0.00 37.63 1.31
3420 3933 1.982660 TCGTGGACCTGCCTCTATAG 58.017 55.000 0.00 0.00 37.63 1.31
3421 3934 0.962489 CGTGGACCTGCCTCTATAGG 59.038 60.000 0.00 0.00 46.76 2.57
3431 3944 7.202972 ACCTGCCTCTATAGGTCTATACTAG 57.797 44.000 0.00 0.00 43.69 2.57
3432 3945 6.967056 ACCTGCCTCTATAGGTCTATACTAGA 59.033 42.308 0.00 0.00 43.69 2.43
3433 3946 7.126726 ACCTGCCTCTATAGGTCTATACTAGAG 59.873 44.444 0.00 8.33 43.69 2.43
3449 3962 3.354131 GAGCATCTCCACTCGTTCC 57.646 57.895 0.00 0.00 0.00 3.62
3450 3963 0.526524 GAGCATCTCCACTCGTTCCG 60.527 60.000 0.00 0.00 0.00 4.30
3451 3964 1.519455 GCATCTCCACTCGTTCCGG 60.519 63.158 0.00 0.00 0.00 5.14
3452 3965 1.141881 CATCTCCACTCGTTCCGGG 59.858 63.158 0.00 0.00 0.00 5.73
3453 3966 2.058595 ATCTCCACTCGTTCCGGGG 61.059 63.158 0.00 0.00 0.00 5.73
3454 3967 3.771160 CTCCACTCGTTCCGGGGG 61.771 72.222 0.00 0.00 0.00 5.40
3457 3970 4.016706 CACTCGTTCCGGGGGCTT 62.017 66.667 0.00 0.00 0.00 4.35
3458 3971 4.016706 ACTCGTTCCGGGGGCTTG 62.017 66.667 0.00 0.00 0.00 4.01
3459 3972 3.702048 CTCGTTCCGGGGGCTTGA 61.702 66.667 0.00 0.00 0.00 3.02
3460 3973 3.243053 TCGTTCCGGGGGCTTGAA 61.243 61.111 0.00 0.00 0.00 2.69
3461 3974 2.281900 CGTTCCGGGGGCTTGAAA 60.282 61.111 0.00 0.00 0.00 2.69
3462 3975 1.677633 CGTTCCGGGGGCTTGAAAT 60.678 57.895 0.00 0.00 0.00 2.17
3463 3976 0.393267 CGTTCCGGGGGCTTGAAATA 60.393 55.000 0.00 0.00 0.00 1.40
3464 3977 1.389555 GTTCCGGGGGCTTGAAATAG 58.610 55.000 0.00 0.00 0.00 1.73
3465 3978 0.395173 TTCCGGGGGCTTGAAATAGC 60.395 55.000 0.00 0.00 40.48 2.97
3466 3979 2.186826 CCGGGGGCTTGAAATAGCG 61.187 63.158 0.00 0.00 42.15 4.26
3469 3982 2.715624 GGGCTTGAAATAGCGCCG 59.284 61.111 2.29 0.00 45.37 6.46
3470 3983 2.024729 GGCTTGAAATAGCGCCGC 59.975 61.111 2.29 0.00 42.15 6.53
3471 3984 2.024729 GCTTGAAATAGCGCCGCC 59.975 61.111 4.98 0.00 0.00 6.13
3472 3985 2.715624 CTTGAAATAGCGCCGCCC 59.284 61.111 4.98 0.00 0.00 6.13
3473 3986 3.168237 CTTGAAATAGCGCCGCCCG 62.168 63.158 4.98 0.00 40.75 6.13
3509 4022 2.618442 AAAAACGACGTGGAGGGTAA 57.382 45.000 3.97 0.00 0.00 2.85
3510 4023 1.869774 AAAACGACGTGGAGGGTAAC 58.130 50.000 3.97 0.00 0.00 2.50
3511 4024 1.043022 AAACGACGTGGAGGGTAACT 58.957 50.000 3.97 0.00 0.00 2.24
3512 4025 1.909700 AACGACGTGGAGGGTAACTA 58.090 50.000 3.97 0.00 0.00 2.24
3513 4026 2.134789 ACGACGTGGAGGGTAACTAT 57.865 50.000 3.97 0.00 0.00 2.12
3514 4027 3.281727 ACGACGTGGAGGGTAACTATA 57.718 47.619 3.97 0.00 0.00 1.31
3515 4028 3.825328 ACGACGTGGAGGGTAACTATAT 58.175 45.455 3.97 0.00 0.00 0.86
3516 4029 3.817647 ACGACGTGGAGGGTAACTATATC 59.182 47.826 3.97 0.00 0.00 1.63
3517 4030 4.070716 CGACGTGGAGGGTAACTATATCT 58.929 47.826 0.00 0.00 0.00 1.98
3518 4031 4.518211 CGACGTGGAGGGTAACTATATCTT 59.482 45.833 0.00 0.00 0.00 2.40
3519 4032 5.334724 CGACGTGGAGGGTAACTATATCTTC 60.335 48.000 0.00 0.00 0.00 2.87
3520 4033 5.703310 ACGTGGAGGGTAACTATATCTTCT 58.297 41.667 0.00 0.00 0.00 2.85
3521 4034 5.535406 ACGTGGAGGGTAACTATATCTTCTG 59.465 44.000 0.00 0.00 0.00 3.02
3522 4035 5.565045 CGTGGAGGGTAACTATATCTTCTGC 60.565 48.000 0.00 0.00 0.00 4.26
3523 4036 5.304614 GTGGAGGGTAACTATATCTTCTGCA 59.695 44.000 0.00 0.00 0.00 4.41
3524 4037 5.903010 TGGAGGGTAACTATATCTTCTGCAA 59.097 40.000 0.00 0.00 0.00 4.08
3525 4038 6.183360 TGGAGGGTAACTATATCTTCTGCAAC 60.183 42.308 0.00 0.00 0.00 4.17
3526 4039 6.176014 AGGGTAACTATATCTTCTGCAACC 57.824 41.667 0.00 0.00 0.00 3.77
3527 4040 4.989168 GGGTAACTATATCTTCTGCAACCG 59.011 45.833 0.00 0.00 0.00 4.44
3528 4041 5.221382 GGGTAACTATATCTTCTGCAACCGA 60.221 44.000 0.00 0.00 0.00 4.69
3529 4042 6.278363 GGTAACTATATCTTCTGCAACCGAA 58.722 40.000 0.00 0.00 0.00 4.30
3530 4043 6.759827 GGTAACTATATCTTCTGCAACCGAAA 59.240 38.462 0.00 0.00 0.00 3.46
3531 4044 7.279313 GGTAACTATATCTTCTGCAACCGAAAA 59.721 37.037 0.00 0.00 0.00 2.29
3532 4045 7.681939 AACTATATCTTCTGCAACCGAAAAA 57.318 32.000 0.00 0.00 0.00 1.94
3550 4063 0.820871 AAAACTGCAACCGCCTTTGA 59.179 45.000 0.00 0.00 37.32 2.69
3652 4165 2.100418 GGAAATCCTCTTGCTGCATTCC 59.900 50.000 11.75 11.75 0.00 3.01
3725 4238 1.037030 CCAAACACTGCCACCACTGT 61.037 55.000 0.00 0.00 0.00 3.55
3732 4245 2.203337 GCCACCACTGTCCTGCAA 60.203 61.111 0.00 0.00 0.00 4.08
3779 4292 2.514592 CTCGGCCATGCGTCCATT 60.515 61.111 2.24 0.00 0.00 3.16
3870 4384 0.687920 TGAATCCAAGTGTGCCGGTA 59.312 50.000 1.90 0.00 0.00 4.02
3925 4439 3.940852 CTCACGGATGGAATTCACAATCA 59.059 43.478 7.93 0.00 0.00 2.57
3979 4493 1.006287 GCCGAAATACTTTCTCGTCGC 60.006 52.381 0.00 0.00 37.52 5.19
4096 4611 4.722855 GCCGCGGCTTTGCATTGT 62.723 61.111 41.71 0.00 38.26 2.71
4116 4631 2.190578 GCGAATAGGCCAGCCAGT 59.809 61.111 12.03 0.00 38.92 4.00
4143 4658 1.767681 AGGACCATGAGATGCTCTTCC 59.232 52.381 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.313944 TGGCAATCTACACTAAGGTAAGATAA 57.686 34.615 0.00 0.00 31.38 1.75
1 2 7.907841 TGGCAATCTACACTAAGGTAAGATA 57.092 36.000 0.00 0.00 31.38 1.98
2 3 6.808321 TGGCAATCTACACTAAGGTAAGAT 57.192 37.500 0.00 0.00 32.30 2.40
3 4 6.611642 AGATGGCAATCTACACTAAGGTAAGA 59.388 38.462 0.21 0.00 41.57 2.10
4 5 6.821388 AGATGGCAATCTACACTAAGGTAAG 58.179 40.000 0.21 0.00 41.57 2.34
5 6 6.611642 AGAGATGGCAATCTACACTAAGGTAA 59.388 38.462 2.74 0.00 43.48 2.85
6 7 6.040955 CAGAGATGGCAATCTACACTAAGGTA 59.959 42.308 2.74 0.00 43.48 3.08
7 8 4.965532 AGAGATGGCAATCTACACTAAGGT 59.034 41.667 2.74 0.00 43.48 3.50
8 9 5.295950 CAGAGATGGCAATCTACACTAAGG 58.704 45.833 2.74 0.00 43.48 2.69
9 10 4.749099 GCAGAGATGGCAATCTACACTAAG 59.251 45.833 2.74 0.00 43.48 2.18
10 11 4.162131 TGCAGAGATGGCAATCTACACTAA 59.838 41.667 2.74 0.00 43.48 2.24
11 12 3.706086 TGCAGAGATGGCAATCTACACTA 59.294 43.478 2.74 0.00 43.48 2.74
12 13 2.502947 TGCAGAGATGGCAATCTACACT 59.497 45.455 2.74 0.00 43.48 3.55
13 14 2.871022 CTGCAGAGATGGCAATCTACAC 59.129 50.000 8.42 0.00 43.48 2.90
14 15 2.767960 TCTGCAGAGATGGCAATCTACA 59.232 45.455 13.74 2.29 43.48 2.74
15 16 3.465742 TCTGCAGAGATGGCAATCTAC 57.534 47.619 13.74 0.00 43.48 2.59
16 17 4.141551 ACATTCTGCAGAGATGGCAATCTA 60.142 41.667 27.54 10.15 43.48 1.98
17 18 3.215151 CATTCTGCAGAGATGGCAATCT 58.785 45.455 17.43 2.24 46.23 2.40
18 19 2.950309 ACATTCTGCAGAGATGGCAATC 59.050 45.455 27.54 0.00 41.39 2.67
19 20 2.688446 CACATTCTGCAGAGATGGCAAT 59.312 45.455 27.54 13.75 41.39 3.56
20 21 2.089201 CACATTCTGCAGAGATGGCAA 58.911 47.619 27.54 12.34 41.39 4.52
21 22 1.279846 TCACATTCTGCAGAGATGGCA 59.720 47.619 27.54 17.72 39.32 4.92
22 23 2.034104 TCACATTCTGCAGAGATGGC 57.966 50.000 27.54 0.00 0.00 4.40
23 24 3.607741 ACTTCACATTCTGCAGAGATGG 58.392 45.455 27.54 20.60 0.00 3.51
24 25 5.873712 ACTAACTTCACATTCTGCAGAGATG 59.126 40.000 24.86 24.86 0.00 2.90
25 26 6.047511 ACTAACTTCACATTCTGCAGAGAT 57.952 37.500 17.43 10.64 0.00 2.75
26 27 5.474578 ACTAACTTCACATTCTGCAGAGA 57.525 39.130 17.43 7.94 0.00 3.10
27 28 5.468072 ACAACTAACTTCACATTCTGCAGAG 59.532 40.000 17.43 9.03 0.00 3.35
28 29 5.237127 CACAACTAACTTCACATTCTGCAGA 59.763 40.000 13.74 13.74 0.00 4.26
29 30 5.008019 ACACAACTAACTTCACATTCTGCAG 59.992 40.000 7.63 7.63 0.00 4.41
30 31 4.881273 ACACAACTAACTTCACATTCTGCA 59.119 37.500 0.00 0.00 0.00 4.41
31 32 5.424121 ACACAACTAACTTCACATTCTGC 57.576 39.130 0.00 0.00 0.00 4.26
32 33 7.715265 ACTACACAACTAACTTCACATTCTG 57.285 36.000 0.00 0.00 0.00 3.02
33 34 8.732746 AAACTACACAACTAACTTCACATTCT 57.267 30.769 0.00 0.00 0.00 2.40
34 35 8.827677 AGAAACTACACAACTAACTTCACATTC 58.172 33.333 0.00 0.00 0.00 2.67
35 36 8.732746 AGAAACTACACAACTAACTTCACATT 57.267 30.769 0.00 0.00 0.00 2.71
36 37 8.732746 AAGAAACTACACAACTAACTTCACAT 57.267 30.769 0.00 0.00 0.00 3.21
37 38 9.090692 GTAAGAAACTACACAACTAACTTCACA 57.909 33.333 0.00 0.00 0.00 3.58
38 39 9.310716 AGTAAGAAACTACACAACTAACTTCAC 57.689 33.333 0.00 0.00 36.36 3.18
39 40 9.880157 AAGTAAGAAACTACACAACTAACTTCA 57.120 29.630 0.00 0.00 37.50 3.02
73 74 6.756074 TGAATTTTGTGTGAAAGGTCATGAAC 59.244 34.615 1.26 1.26 35.80 3.18
74 75 6.871844 TGAATTTTGTGTGAAAGGTCATGAA 58.128 32.000 0.00 0.00 35.80 2.57
75 76 6.462552 TGAATTTTGTGTGAAAGGTCATGA 57.537 33.333 0.00 0.00 35.80 3.07
76 77 6.924612 TCATGAATTTTGTGTGAAAGGTCATG 59.075 34.615 14.44 14.44 41.11 3.07
77 78 7.053316 TCATGAATTTTGTGTGAAAGGTCAT 57.947 32.000 0.00 0.00 35.80 3.06
78 79 6.462552 TCATGAATTTTGTGTGAAAGGTCA 57.537 33.333 0.00 0.00 0.00 4.02
79 80 7.769272 TTTCATGAATTTTGTGTGAAAGGTC 57.231 32.000 9.40 0.00 34.82 3.85
80 81 8.558973 TTTTTCATGAATTTTGTGTGAAAGGT 57.441 26.923 9.40 0.00 39.21 3.50
102 103 0.664166 CGCGTTGCTGCAGGATTTTT 60.664 50.000 17.12 0.00 34.15 1.94
103 104 1.081242 CGCGTTGCTGCAGGATTTT 60.081 52.632 17.12 0.00 34.15 1.82
104 105 2.562912 CGCGTTGCTGCAGGATTT 59.437 55.556 17.12 0.00 34.15 2.17
105 106 4.107051 GCGCGTTGCTGCAGGATT 62.107 61.111 17.12 0.00 41.73 3.01
119 120 2.638330 TACTAGTTGATGCCCCGCGC 62.638 60.000 0.00 0.00 38.31 6.86
120 121 0.033504 ATACTAGTTGATGCCCCGCG 59.966 55.000 0.00 0.00 0.00 6.46
121 122 3.056107 TGATATACTAGTTGATGCCCCGC 60.056 47.826 0.00 0.00 0.00 6.13
122 123 4.801330 TGATATACTAGTTGATGCCCCG 57.199 45.455 0.00 0.00 0.00 5.73
123 124 9.515226 TTTTTATGATATACTAGTTGATGCCCC 57.485 33.333 0.00 0.00 0.00 5.80
131 132 9.338622 GGTGGCAGTTTTTATGATATACTAGTT 57.661 33.333 0.00 0.00 0.00 2.24
132 133 7.656137 CGGTGGCAGTTTTTATGATATACTAGT 59.344 37.037 0.00 0.00 0.00 2.57
133 134 7.870954 TCGGTGGCAGTTTTTATGATATACTAG 59.129 37.037 0.00 0.00 0.00 2.57
134 135 7.728148 TCGGTGGCAGTTTTTATGATATACTA 58.272 34.615 0.00 0.00 0.00 1.82
135 136 6.588204 TCGGTGGCAGTTTTTATGATATACT 58.412 36.000 0.00 0.00 0.00 2.12
171 172 5.507637 AGACAATGAAGAATGGAGATTGCT 58.492 37.500 0.00 0.00 0.00 3.91
222 223 5.010719 ACGGTATGGTGTAATCACATAGAGG 59.989 44.000 0.98 0.00 45.45 3.69
230 231 4.435425 GCAACTACGGTATGGTGTAATCA 58.565 43.478 0.00 0.00 0.00 2.57
241 242 2.492881 TCTCAATTCGGCAACTACGGTA 59.507 45.455 0.00 0.00 0.00 4.02
244 245 1.659098 GGTCTCAATTCGGCAACTACG 59.341 52.381 0.00 0.00 0.00 3.51
257 258 2.173782 TGGCCTTACAGTTTGGTCTCAA 59.826 45.455 3.32 0.00 0.00 3.02
302 303 1.009829 AGAGAAACCGATTGATGCGC 58.990 50.000 0.00 0.00 0.00 6.09
321 322 1.127213 GATTCGTCGCGGCAGTAAAAA 59.873 47.619 12.89 0.00 0.00 1.94
322 323 0.717224 GATTCGTCGCGGCAGTAAAA 59.283 50.000 12.89 0.00 0.00 1.52
360 361 4.294232 TCATACGTTTTTACGAACCGTCA 58.706 39.130 4.55 0.00 41.54 4.35
368 369 4.713806 TGGTGCATTCATACGTTTTTACG 58.286 39.130 0.00 0.00 39.31 3.18
426 427 0.936600 TGTATGCCGCGTGATGATTG 59.063 50.000 4.92 0.00 0.00 2.67
466 682 0.965866 GGGGCCTTAAAGAGTGGTGC 60.966 60.000 0.84 0.00 0.00 5.01
481 697 1.974973 CTGGGCAATTTGATGGGGGC 61.975 60.000 0.00 0.00 0.00 5.80
490 706 0.958822 GTCGGTTGTCTGGGCAATTT 59.041 50.000 0.00 0.00 0.00 1.82
520 736 1.819288 TGCGTAAAGGTCTCTCTGAGG 59.181 52.381 4.59 0.00 0.00 3.86
565 796 9.760077 GGATTCCTTCGATAAGAAATAAGTACA 57.240 33.333 0.00 0.00 38.57 2.90
592 823 5.183969 GTGTAGGGTAAGAAAGATGGAACC 58.816 45.833 0.00 0.00 0.00 3.62
595 826 4.841813 TGTGTGTAGGGTAAGAAAGATGGA 59.158 41.667 0.00 0.00 0.00 3.41
608 839 6.764560 GGGTGTATTAAGTAATGTGTGTAGGG 59.235 42.308 0.00 0.00 0.00 3.53
612 843 5.640357 CACGGGTGTATTAAGTAATGTGTGT 59.360 40.000 0.00 0.00 0.00 3.72
704 968 9.988815 ACCTTGTGTATTAGCAAGAGATTATAG 57.011 33.333 5.93 0.00 43.29 1.31
753 1044 0.254178 ACTCATACCAGCCAAGGCAG 59.746 55.000 14.40 5.05 44.88 4.85
756 1047 3.378427 GCTTTTACTCATACCAGCCAAGG 59.622 47.826 0.00 0.00 0.00 3.61
759 1050 3.519510 AGAGCTTTTACTCATACCAGCCA 59.480 43.478 0.00 0.00 39.26 4.75
802 1093 3.459227 TGTGCCAGAGGGATCATCAAATA 59.541 43.478 0.00 0.00 35.59 1.40
807 1098 0.108207 CCTGTGCCAGAGGGATCATC 59.892 60.000 0.00 0.00 35.59 2.92
808 1099 0.622738 ACCTGTGCCAGAGGGATCAT 60.623 55.000 13.13 0.00 34.56 2.45
809 1100 1.229625 ACCTGTGCCAGAGGGATCA 60.230 57.895 13.13 0.00 34.56 2.92
810 1101 1.222936 CACCTGTGCCAGAGGGATC 59.777 63.158 13.13 0.00 34.56 3.36
822 1113 1.376942 GCTGCATGAGAGCACCTGT 60.377 57.895 11.27 0.00 40.11 4.00
847 1138 4.336532 ACACCGCGATTTAAGTTGATTC 57.663 40.909 8.23 0.00 0.00 2.52
1016 1432 0.465460 TCGAGTGCCTGCCTTTGTTT 60.465 50.000 0.00 0.00 0.00 2.83
1044 1460 4.524318 AATACGGCCGCTCCCACG 62.524 66.667 28.58 0.00 0.00 4.94
1045 1461 2.124860 AAATACGGCCGCTCCCAC 60.125 61.111 28.58 0.00 0.00 4.61
1046 1462 2.124901 CAAATACGGCCGCTCCCA 60.125 61.111 28.58 5.66 0.00 4.37
1047 1463 1.310216 AAACAAATACGGCCGCTCCC 61.310 55.000 28.58 0.00 0.00 4.30
1048 1464 1.371595 TAAACAAATACGGCCGCTCC 58.628 50.000 28.58 0.00 0.00 4.70
1049 1465 2.223180 CCTTAAACAAATACGGCCGCTC 60.223 50.000 28.58 0.00 0.00 5.03
1050 1466 1.741145 CCTTAAACAAATACGGCCGCT 59.259 47.619 28.58 15.49 0.00 5.52
1051 1467 1.469703 ACCTTAAACAAATACGGCCGC 59.530 47.619 28.58 0.00 0.00 6.53
1052 1468 3.494232 CAACCTTAAACAAATACGGCCG 58.506 45.455 26.86 26.86 0.00 6.13
1053 1469 3.256383 ACCAACCTTAAACAAATACGGCC 59.744 43.478 0.00 0.00 0.00 6.13
1054 1470 4.231439 CACCAACCTTAAACAAATACGGC 58.769 43.478 0.00 0.00 0.00 5.68
1055 1471 4.231439 GCACCAACCTTAAACAAATACGG 58.769 43.478 0.00 0.00 0.00 4.02
1133 1564 3.320879 CTCACATCAGCGGCCACCT 62.321 63.158 2.24 0.00 0.00 4.00
1143 1574 2.169978 CAGATCCTTCAGGCTCACATCA 59.830 50.000 0.00 0.00 32.96 3.07
1176 1607 0.034896 TCTCCTTGGCGAAGTTGTCC 59.965 55.000 7.74 0.00 0.00 4.02
1180 1611 0.836400 TCCCTCTCCTTGGCGAAGTT 60.836 55.000 7.74 0.00 0.00 2.66
1236 1667 0.040058 AGAGGATGCAAACCATGGCA 59.960 50.000 13.04 3.92 45.23 4.92
1272 1703 5.932303 CCATACAGAAAGAAACGAAGGAGAA 59.068 40.000 0.00 0.00 0.00 2.87
1285 1716 5.426504 AGAAGATCAGCACCATACAGAAAG 58.573 41.667 0.00 0.00 0.00 2.62
1297 1728 3.329386 CCGACAAAAGAGAAGATCAGCA 58.671 45.455 0.00 0.00 0.00 4.41
1305 1736 3.269538 TCAACACCCGACAAAAGAGAA 57.730 42.857 0.00 0.00 0.00 2.87
1386 1817 1.136110 ACTTTGCACAAAACGGAAGGG 59.864 47.619 0.00 0.00 0.00 3.95
1391 1822 4.028026 CGAAACTTACTTTGCACAAAACGG 60.028 41.667 0.00 0.00 0.00 4.44
1425 1856 7.895962 AGAGTAGCCTATGATATTGATACCACA 59.104 37.037 0.00 0.00 0.00 4.17
1426 1857 8.194104 CAGAGTAGCCTATGATATTGATACCAC 58.806 40.741 0.00 0.00 31.36 4.16
1435 1866 9.862371 CGATAAAAACAGAGTAGCCTATGATAT 57.138 33.333 0.00 0.00 34.02 1.63
1501 1932 0.891904 GGAAGTGGCACGCCCTAAAA 60.892 55.000 19.45 0.00 41.54 1.52
1513 1945 6.739331 AGAGGAACTATAATCTGGAAGTGG 57.261 41.667 0.00 0.00 41.55 4.00
1554 1986 2.380064 ACTTTGGGCTCAACATTGGA 57.620 45.000 0.00 0.00 31.78 3.53
1555 1987 4.599047 TTTACTTTGGGCTCAACATTGG 57.401 40.909 0.00 0.00 31.78 3.16
1556 1988 6.686630 TGTATTTACTTTGGGCTCAACATTG 58.313 36.000 0.00 0.00 31.78 2.82
1557 1989 6.493458 ACTGTATTTACTTTGGGCTCAACATT 59.507 34.615 0.00 0.00 31.78 2.71
1560 1992 5.959618 ACTGTATTTACTTTGGGCTCAAC 57.040 39.130 0.00 0.00 31.78 3.18
1671 2104 6.893020 ACCTTCTGGAATTCCACTAGTATT 57.107 37.500 23.63 7.07 42.01 1.89
1673 2106 6.901300 ACATACCTTCTGGAATTCCACTAGTA 59.099 38.462 23.63 19.90 42.01 1.82
1674 2107 5.726793 ACATACCTTCTGGAATTCCACTAGT 59.273 40.000 23.63 18.55 42.01 2.57
1675 2108 6.240549 ACATACCTTCTGGAATTCCACTAG 57.759 41.667 23.63 20.38 42.01 2.57
1695 2128 7.439955 TCAAAGACCGAACGCATTATAATACAT 59.560 33.333 0.00 0.00 0.00 2.29
1708 2141 3.009301 ACAGTAGTCAAAGACCGAACG 57.991 47.619 0.00 0.00 32.18 3.95
1746 2179 1.200948 GCACCCTGAGACTTGCAATTC 59.799 52.381 8.67 8.67 34.97 2.17
1806 2246 9.455847 GCTGCCTTGTCAATATTTTAGAATAAG 57.544 33.333 0.00 0.00 31.82 1.73
1812 2252 5.911280 CGATGCTGCCTTGTCAATATTTTAG 59.089 40.000 0.00 0.00 0.00 1.85
1848 2288 3.200483 TGCTAGATCATGTGCATGTGTC 58.800 45.455 11.38 10.67 39.72 3.67
1867 2307 5.748592 ACTTTAAACTGACGAAGACATTGC 58.251 37.500 0.00 0.00 0.00 3.56
1878 2318 6.487689 AGCAGCTCAATACTTTAAACTGAC 57.512 37.500 0.00 0.00 0.00 3.51
1910 2350 7.729116 ACTACCTTTAGTTGTTTACTAGCACA 58.271 34.615 0.00 0.00 40.35 4.57
1917 2362 7.643528 AGCGTTACTACCTTTAGTTGTTTAC 57.356 36.000 0.00 0.00 39.43 2.01
1987 2432 0.533978 AGCGCACCACAACATACACA 60.534 50.000 11.47 0.00 0.00 3.72
1988 2433 0.165944 GAGCGCACCACAACATACAC 59.834 55.000 11.47 0.00 0.00 2.90
2034 2479 4.445452 AGCAAATATCAGGTGCAAAGTG 57.555 40.909 0.00 0.00 40.83 3.16
2124 2591 1.688735 TCTGAGGTGAACTGTGACCAG 59.311 52.381 10.85 0.00 44.68 4.00
2247 2754 2.873604 AACGTACGTTGCACCACGC 61.874 57.895 31.29 0.00 44.37 5.34
2319 2827 0.169672 CGGTATGAACACGTCGGACT 59.830 55.000 6.57 0.00 0.00 3.85
2324 2832 2.634982 TGTACCGGTATGAACACGTC 57.365 50.000 19.19 1.61 0.00 4.34
2332 2840 4.982916 GCTAGTCTGAATTGTACCGGTATG 59.017 45.833 19.19 2.98 0.00 2.39
2356 2864 5.046950 AGTGAGAAGTTAGACAGGGACATTC 60.047 44.000 0.00 0.00 0.00 2.67
2360 2868 3.827302 TCAGTGAGAAGTTAGACAGGGAC 59.173 47.826 0.00 0.00 0.00 4.46
2361 2869 4.114015 TCAGTGAGAAGTTAGACAGGGA 57.886 45.455 0.00 0.00 0.00 4.20
2369 2877 7.498900 TGCTTCAGAAAATTCAGTGAGAAGTTA 59.501 33.333 14.13 5.20 43.12 2.24
2416 2924 5.616204 GCGTGCTTTTACGGAATAGAAAAGT 60.616 40.000 1.55 0.00 43.87 2.66
2596 3104 0.682852 ACATCCCGAACAGACCGAAA 59.317 50.000 0.00 0.00 0.00 3.46
2683 3191 6.034577 TCGCACTACGTGATGAAAATAGAAAG 59.965 38.462 0.00 0.00 44.19 2.62
2758 3266 3.242712 CGACCTGCACAACAACAAATTTC 59.757 43.478 0.00 0.00 0.00 2.17
2763 3271 1.999071 GCCGACCTGCACAACAACAA 61.999 55.000 0.00 0.00 0.00 2.83
2851 3359 0.325203 GGTGCTCCTTCTCCCTCTCT 60.325 60.000 0.00 0.00 0.00 3.10
3022 3530 5.609423 AGACAATTCCTCTGCAGATCATAC 58.391 41.667 18.63 4.71 0.00 2.39
3067 3579 2.306847 ACAAGTTTGCCGGAACTTCAT 58.693 42.857 16.23 7.13 45.44 2.57
3084 3596 0.748729 GACCCAACCGACCACAACAA 60.749 55.000 0.00 0.00 0.00 2.83
3085 3597 1.153127 GACCCAACCGACCACAACA 60.153 57.895 0.00 0.00 0.00 3.33
3086 3598 0.748729 TTGACCCAACCGACCACAAC 60.749 55.000 0.00 0.00 0.00 3.32
3114 3626 4.323417 ACGCCACAATCTGAAACTATCAA 58.677 39.130 0.00 0.00 37.67 2.57
3186 3699 3.266964 CCGTGGACAATGGCTGTG 58.733 61.111 0.00 0.00 38.84 3.66
3205 3718 2.548480 GCCAGTAAACAACACAGACTCC 59.452 50.000 0.00 0.00 0.00 3.85
3216 3729 2.032965 TCTACCCAGGCCAGTAAACA 57.967 50.000 5.01 0.00 0.00 2.83
3221 3734 1.609783 GCATTCTACCCAGGCCAGT 59.390 57.895 5.01 1.12 0.00 4.00
3222 3735 1.152881 GGCATTCTACCCAGGCCAG 60.153 63.158 5.01 0.00 44.01 4.85
3280 3793 3.057734 GCATACTTCCTAATCGTTCCCG 58.942 50.000 0.00 0.00 0.00 5.14
3281 3794 4.067972 TGCATACTTCCTAATCGTTCCC 57.932 45.455 0.00 0.00 0.00 3.97
3282 3795 6.313905 CCATATGCATACTTCCTAATCGTTCC 59.686 42.308 8.99 0.00 0.00 3.62
3283 3796 7.097192 TCCATATGCATACTTCCTAATCGTTC 58.903 38.462 8.99 0.00 0.00 3.95
3284 3797 7.004555 TCCATATGCATACTTCCTAATCGTT 57.995 36.000 8.99 0.00 0.00 3.85
3285 3798 6.605471 TCCATATGCATACTTCCTAATCGT 57.395 37.500 8.99 0.00 0.00 3.73
3286 3799 5.521735 GCTCCATATGCATACTTCCTAATCG 59.478 44.000 8.99 0.00 0.00 3.34
3287 3800 6.409704 TGCTCCATATGCATACTTCCTAATC 58.590 40.000 8.99 0.00 35.31 1.75
3288 3801 6.378661 TGCTCCATATGCATACTTCCTAAT 57.621 37.500 8.99 0.00 35.31 1.73
3289 3802 5.823861 TGCTCCATATGCATACTTCCTAA 57.176 39.130 8.99 0.00 35.31 2.69
3299 3812 4.847990 TCATATCCATGCTCCATATGCA 57.152 40.909 0.00 0.00 44.95 3.96
3300 3813 4.579340 CCTTCATATCCATGCTCCATATGC 59.421 45.833 0.00 0.00 32.60 3.14
3301 3814 5.131067 CCCTTCATATCCATGCTCCATATG 58.869 45.833 0.00 0.00 33.47 1.78
3302 3815 4.792426 ACCCTTCATATCCATGCTCCATAT 59.208 41.667 0.00 0.00 31.73 1.78
3303 3816 4.019051 CACCCTTCATATCCATGCTCCATA 60.019 45.833 0.00 0.00 31.73 2.74
3304 3817 2.991713 ACCCTTCATATCCATGCTCCAT 59.008 45.455 0.00 0.00 31.73 3.41
3305 3818 2.107031 CACCCTTCATATCCATGCTCCA 59.893 50.000 0.00 0.00 31.73 3.86
3306 3819 2.107204 ACACCCTTCATATCCATGCTCC 59.893 50.000 0.00 0.00 31.73 4.70
3307 3820 3.406764 GACACCCTTCATATCCATGCTC 58.593 50.000 0.00 0.00 31.73 4.26
3308 3821 2.224378 CGACACCCTTCATATCCATGCT 60.224 50.000 0.00 0.00 31.73 3.79
3309 3822 2.146342 CGACACCCTTCATATCCATGC 58.854 52.381 0.00 0.00 31.73 4.06
3310 3823 3.555795 CCTCGACACCCTTCATATCCATG 60.556 52.174 0.00 0.00 0.00 3.66
3311 3824 2.634940 CCTCGACACCCTTCATATCCAT 59.365 50.000 0.00 0.00 0.00 3.41
3312 3825 2.039418 CCTCGACACCCTTCATATCCA 58.961 52.381 0.00 0.00 0.00 3.41
3313 3826 1.270358 GCCTCGACACCCTTCATATCC 60.270 57.143 0.00 0.00 0.00 2.59
3314 3827 1.603172 CGCCTCGACACCCTTCATATC 60.603 57.143 0.00 0.00 0.00 1.63
3315 3828 0.389391 CGCCTCGACACCCTTCATAT 59.611 55.000 0.00 0.00 0.00 1.78
3316 3829 0.681887 TCGCCTCGACACCCTTCATA 60.682 55.000 0.00 0.00 0.00 2.15
3317 3830 1.330655 ATCGCCTCGACACCCTTCAT 61.331 55.000 0.00 0.00 39.18 2.57
3318 3831 1.982395 ATCGCCTCGACACCCTTCA 60.982 57.895 0.00 0.00 39.18 3.02
3319 3832 1.519455 CATCGCCTCGACACCCTTC 60.519 63.158 0.00 0.00 39.18 3.46
3320 3833 2.579201 CATCGCCTCGACACCCTT 59.421 61.111 0.00 0.00 39.18 3.95
3321 3834 4.148825 GCATCGCCTCGACACCCT 62.149 66.667 0.00 0.00 39.18 4.34
3332 3845 3.115190 AACTCTGAGTTTGCGCATCGC 62.115 52.381 17.00 10.43 41.34 4.58
3333 3846 0.792640 AACTCTGAGTTTGCGCATCG 59.207 50.000 17.00 2.98 34.11 3.84
3334 3847 2.977405 AAACTCTGAGTTTGCGCATC 57.023 45.000 29.38 6.75 45.83 3.91
3342 3855 5.065731 GCAGCTAATATGCAAACTCTGAGTT 59.934 40.000 17.00 17.00 43.31 3.01
3343 3856 4.574013 GCAGCTAATATGCAAACTCTGAGT 59.426 41.667 4.06 4.06 43.31 3.41
3344 3857 4.024218 GGCAGCTAATATGCAAACTCTGAG 60.024 45.833 2.45 2.45 45.68 3.35
3345 3858 3.879295 GGCAGCTAATATGCAAACTCTGA 59.121 43.478 0.00 0.00 45.68 3.27
3346 3859 3.881688 AGGCAGCTAATATGCAAACTCTG 59.118 43.478 0.00 0.00 45.68 3.35
3347 3860 4.133078 GAGGCAGCTAATATGCAAACTCT 58.867 43.478 0.00 0.00 45.68 3.24
3348 3861 4.133078 AGAGGCAGCTAATATGCAAACTC 58.867 43.478 0.00 0.00 45.68 3.01
3349 3862 4.162040 AGAGGCAGCTAATATGCAAACT 57.838 40.909 0.00 0.00 45.68 2.66
3350 3863 7.254252 CGATATAGAGGCAGCTAATATGCAAAC 60.254 40.741 0.00 0.00 45.68 2.93
3351 3864 6.758416 CGATATAGAGGCAGCTAATATGCAAA 59.242 38.462 0.00 0.00 45.68 3.68
3352 3865 6.127338 ACGATATAGAGGCAGCTAATATGCAA 60.127 38.462 0.00 0.00 45.68 4.08
3353 3866 5.360999 ACGATATAGAGGCAGCTAATATGCA 59.639 40.000 0.00 0.00 45.68 3.96
3354 3867 5.689514 CACGATATAGAGGCAGCTAATATGC 59.310 44.000 0.00 0.00 43.09 3.14
3355 3868 6.183360 ACCACGATATAGAGGCAGCTAATATG 60.183 42.308 0.00 0.00 0.00 1.78
3356 3869 5.894393 ACCACGATATAGAGGCAGCTAATAT 59.106 40.000 0.00 0.00 0.00 1.28
3357 3870 5.262009 ACCACGATATAGAGGCAGCTAATA 58.738 41.667 0.00 0.00 0.00 0.98
3358 3871 4.090090 ACCACGATATAGAGGCAGCTAAT 58.910 43.478 0.00 0.00 0.00 1.73
3359 3872 3.497332 ACCACGATATAGAGGCAGCTAA 58.503 45.455 0.00 0.00 0.00 3.09
3360 3873 3.156288 ACCACGATATAGAGGCAGCTA 57.844 47.619 0.00 0.00 0.00 3.32
3361 3874 2.002505 ACCACGATATAGAGGCAGCT 57.997 50.000 0.00 0.00 0.00 4.24
3362 3875 3.181485 GGATACCACGATATAGAGGCAGC 60.181 52.174 0.00 0.00 0.00 5.25
3363 3876 4.017126 TGGATACCACGATATAGAGGCAG 58.983 47.826 0.00 0.00 0.00 4.85
3364 3877 4.042271 TGGATACCACGATATAGAGGCA 57.958 45.455 0.00 0.00 0.00 4.75
3365 3878 5.599999 AATGGATACCACGATATAGAGGC 57.400 43.478 0.00 0.00 35.80 4.70
3384 3897 8.206867 AGGTCCACGATATATCATCCATAAATG 58.793 37.037 13.11 0.00 0.00 2.32
3385 3898 8.206867 CAGGTCCACGATATATCATCCATAAAT 58.793 37.037 13.11 0.00 0.00 1.40
3386 3899 7.555965 CAGGTCCACGATATATCATCCATAAA 58.444 38.462 13.11 0.00 0.00 1.40
3387 3900 6.406961 GCAGGTCCACGATATATCATCCATAA 60.407 42.308 13.11 0.00 0.00 1.90
3388 3901 5.069119 GCAGGTCCACGATATATCATCCATA 59.931 44.000 13.11 0.00 0.00 2.74
3389 3902 4.141846 GCAGGTCCACGATATATCATCCAT 60.142 45.833 13.11 0.00 0.00 3.41
3390 3903 3.195610 GCAGGTCCACGATATATCATCCA 59.804 47.826 13.11 0.00 0.00 3.41
3391 3904 3.430929 GGCAGGTCCACGATATATCATCC 60.431 52.174 13.11 6.94 34.01 3.51
3392 3905 3.449018 AGGCAGGTCCACGATATATCATC 59.551 47.826 13.11 0.00 37.29 2.92
3393 3906 3.445008 AGGCAGGTCCACGATATATCAT 58.555 45.455 13.11 0.00 37.29 2.45
3394 3907 2.826128 GAGGCAGGTCCACGATATATCA 59.174 50.000 13.11 0.00 37.29 2.15
3395 3908 3.093057 AGAGGCAGGTCCACGATATATC 58.907 50.000 2.34 2.34 37.29 1.63
3396 3909 3.176924 AGAGGCAGGTCCACGATATAT 57.823 47.619 0.00 0.00 37.29 0.86
3397 3910 2.677542 AGAGGCAGGTCCACGATATA 57.322 50.000 0.00 0.00 37.29 0.86
3398 3911 2.677542 TAGAGGCAGGTCCACGATAT 57.322 50.000 0.00 0.00 37.29 1.63
3399 3912 2.677542 ATAGAGGCAGGTCCACGATA 57.322 50.000 0.00 0.00 37.29 2.92
3400 3913 2.520069 CTATAGAGGCAGGTCCACGAT 58.480 52.381 0.00 0.00 37.29 3.73
3401 3914 1.478837 CCTATAGAGGCAGGTCCACGA 60.479 57.143 0.00 0.00 35.54 4.35
3402 3915 0.962489 CCTATAGAGGCAGGTCCACG 59.038 60.000 0.00 0.00 35.54 4.94
3407 3920 6.967056 TCTAGTATAGACCTATAGAGGCAGGT 59.033 42.308 2.46 0.00 44.15 4.00
3408 3921 7.440505 TCTAGTATAGACCTATAGAGGCAGG 57.559 44.000 2.46 0.00 44.15 4.85
3409 3922 6.990349 GCTCTAGTATAGACCTATAGAGGCAG 59.010 46.154 2.46 0.00 44.15 4.85
3410 3923 6.444171 TGCTCTAGTATAGACCTATAGAGGCA 59.556 42.308 2.46 12.61 44.15 4.75
3411 3924 6.891388 TGCTCTAGTATAGACCTATAGAGGC 58.109 44.000 2.46 0.00 44.15 4.70
3412 3925 8.934697 AGATGCTCTAGTATAGACCTATAGAGG 58.065 40.741 0.61 0.61 44.15 3.69
3413 3926 9.982651 GAGATGCTCTAGTATAGACCTATAGAG 57.017 40.741 0.00 7.55 44.15 2.43
3414 3927 8.930527 GGAGATGCTCTAGTATAGACCTATAGA 58.069 40.741 0.00 0.00 44.15 1.98
3415 3928 8.710239 TGGAGATGCTCTAGTATAGACCTATAG 58.290 40.741 0.00 0.00 44.15 1.31
3416 3929 8.487848 GTGGAGATGCTCTAGTATAGACCTATA 58.512 40.741 0.00 0.00 44.15 1.31
3417 3930 7.183839 AGTGGAGATGCTCTAGTATAGACCTAT 59.816 40.741 0.00 0.00 44.15 2.57
3418 3931 6.502510 AGTGGAGATGCTCTAGTATAGACCTA 59.497 42.308 0.00 0.00 44.15 3.08
3419 3932 5.312178 AGTGGAGATGCTCTAGTATAGACCT 59.688 44.000 0.00 0.00 44.15 3.85
3420 3933 5.566469 AGTGGAGATGCTCTAGTATAGACC 58.434 45.833 0.00 0.00 44.15 3.85
3421 3934 5.350365 CGAGTGGAGATGCTCTAGTATAGAC 59.650 48.000 0.00 0.00 44.15 2.59
3423 3936 5.242434 ACGAGTGGAGATGCTCTAGTATAG 58.758 45.833 0.00 0.00 41.04 1.31
3424 3937 5.230323 ACGAGTGGAGATGCTCTAGTATA 57.770 43.478 0.00 0.00 0.00 1.47
3425 3938 4.093472 ACGAGTGGAGATGCTCTAGTAT 57.907 45.455 0.00 0.00 0.00 2.12
3426 3939 3.562343 ACGAGTGGAGATGCTCTAGTA 57.438 47.619 0.00 0.00 0.00 1.82
3427 3940 2.428544 ACGAGTGGAGATGCTCTAGT 57.571 50.000 0.00 0.00 0.00 2.57
3428 3941 2.034053 GGAACGAGTGGAGATGCTCTAG 59.966 54.545 0.00 0.00 0.00 2.43
3429 3942 2.025155 GGAACGAGTGGAGATGCTCTA 58.975 52.381 0.00 0.00 0.00 2.43
3430 3943 0.820871 GGAACGAGTGGAGATGCTCT 59.179 55.000 0.00 0.00 0.00 4.09
3431 3944 3.354131 GGAACGAGTGGAGATGCTC 57.646 57.895 0.00 0.00 0.00 4.26
3445 3958 1.389555 CTATTTCAAGCCCCCGGAAC 58.610 55.000 0.73 0.00 0.00 3.62
3446 3959 0.395173 GCTATTTCAAGCCCCCGGAA 60.395 55.000 0.73 0.00 36.45 4.30
3447 3960 1.226262 GCTATTTCAAGCCCCCGGA 59.774 57.895 0.73 0.00 36.45 5.14
3448 3961 2.186826 CGCTATTTCAAGCCCCCGG 61.187 63.158 0.00 0.00 39.43 5.73
3449 3962 2.834618 GCGCTATTTCAAGCCCCCG 61.835 63.158 0.00 0.00 39.43 5.73
3450 3963 2.490148 GGCGCTATTTCAAGCCCCC 61.490 63.158 7.64 0.00 43.54 5.40
3451 3964 2.834618 CGGCGCTATTTCAAGCCCC 61.835 63.158 7.64 0.00 46.36 5.80
3452 3965 2.715624 CGGCGCTATTTCAAGCCC 59.284 61.111 7.64 0.00 46.36 5.19
3453 3966 2.024729 GCGGCGCTATTTCAAGCC 59.975 61.111 26.86 0.00 45.67 4.35
3454 3967 2.024729 GGCGGCGCTATTTCAAGC 59.975 61.111 32.30 7.60 39.21 4.01
3455 3968 2.715624 GGGCGGCGCTATTTCAAG 59.284 61.111 32.30 0.00 0.00 3.02
3456 3969 3.199190 CGGGCGGCGCTATTTCAA 61.199 61.111 32.30 0.00 0.00 2.69
3490 4003 2.158914 AGTTACCCTCCACGTCGTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
3491 4004 1.413812 AGTTACCCTCCACGTCGTTTT 59.586 47.619 0.00 0.00 0.00 2.43
3492 4005 1.043022 AGTTACCCTCCACGTCGTTT 58.957 50.000 0.00 0.00 0.00 3.60
3493 4006 1.909700 TAGTTACCCTCCACGTCGTT 58.090 50.000 0.00 0.00 0.00 3.85
3494 4007 2.134789 ATAGTTACCCTCCACGTCGT 57.865 50.000 0.00 0.00 0.00 4.34
3495 4008 4.070716 AGATATAGTTACCCTCCACGTCG 58.929 47.826 0.00 0.00 0.00 5.12
3496 4009 5.769162 AGAAGATATAGTTACCCTCCACGTC 59.231 44.000 0.00 0.00 0.00 4.34
3497 4010 5.535406 CAGAAGATATAGTTACCCTCCACGT 59.465 44.000 0.00 0.00 0.00 4.49
3498 4011 5.565045 GCAGAAGATATAGTTACCCTCCACG 60.565 48.000 0.00 0.00 0.00 4.94
3499 4012 5.304614 TGCAGAAGATATAGTTACCCTCCAC 59.695 44.000 0.00 0.00 0.00 4.02
3500 4013 5.464069 TGCAGAAGATATAGTTACCCTCCA 58.536 41.667 0.00 0.00 0.00 3.86
3501 4014 6.224584 GTTGCAGAAGATATAGTTACCCTCC 58.775 44.000 0.00 0.00 0.00 4.30
3502 4015 6.224584 GGTTGCAGAAGATATAGTTACCCTC 58.775 44.000 0.00 0.00 0.00 4.30
3503 4016 5.221461 CGGTTGCAGAAGATATAGTTACCCT 60.221 44.000 0.00 0.00 0.00 4.34
3504 4017 4.989168 CGGTTGCAGAAGATATAGTTACCC 59.011 45.833 0.00 0.00 0.00 3.69
3505 4018 5.839621 TCGGTTGCAGAAGATATAGTTACC 58.160 41.667 0.00 0.00 0.00 2.85
3506 4019 7.766219 TTTCGGTTGCAGAAGATATAGTTAC 57.234 36.000 0.00 0.00 0.00 2.50
3507 4020 8.780846 TTTTTCGGTTGCAGAAGATATAGTTA 57.219 30.769 0.00 0.00 0.00 2.24
3508 4021 7.681939 TTTTTCGGTTGCAGAAGATATAGTT 57.318 32.000 0.00 0.00 0.00 2.24
3530 4043 1.205893 TCAAAGGCGGTTGCAGTTTTT 59.794 42.857 0.00 0.00 45.35 1.94
3531 4044 0.820871 TCAAAGGCGGTTGCAGTTTT 59.179 45.000 0.00 0.00 45.35 2.43
3532 4045 0.102300 GTCAAAGGCGGTTGCAGTTT 59.898 50.000 0.00 0.00 45.35 2.66
3533 4046 1.733526 GTCAAAGGCGGTTGCAGTT 59.266 52.632 0.00 0.00 45.35 3.16
3550 4063 0.035439 CAGGGGATGTACAAAGGCGT 60.035 55.000 0.00 0.00 0.00 5.68
3652 4165 2.133553 CACTGCTCGAATCCTAGCATG 58.866 52.381 5.55 0.00 46.96 4.06
3725 4238 4.461081 AGTGTTTGTACAAGTTTTGCAGGA 59.539 37.500 8.56 0.00 35.69 3.86
3732 4245 6.524101 ACCATTGAGTGTTTGTACAAGTTT 57.476 33.333 8.56 0.00 35.69 2.66
3779 4292 3.320826 TCTCGGTGATTCACTTGAAGACA 59.679 43.478 16.02 0.00 37.48 3.41
3870 4384 4.210331 ACTTCAAGTGCAAGAAGGATTGT 58.790 39.130 21.64 5.68 44.20 2.71
3925 4439 1.079750 GCCGAAAGCTCTTCCTCGT 60.080 57.895 0.00 0.00 38.99 4.18
4096 4611 1.001517 TGGCTGGCCTATTCGCAAA 60.002 52.632 13.05 0.00 36.94 3.68
4116 4631 4.147449 CTCATGGTCCTCGCCGCA 62.147 66.667 0.00 0.00 0.00 5.69
4143 4658 4.899239 GATGCCGACGCCCAGGAG 62.899 72.222 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.