Multiple sequence alignment - TraesCS2D01G379000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G379000 chr2D 100.000 4027 0 0 1 4027 483633973 483629947 0.000000e+00 7437.0
1 TraesCS2D01G379000 chr2D 84.666 1213 115 36 1914 3093 527492494 527493668 0.000000e+00 1144.0
2 TraesCS2D01G379000 chr2D 85.885 921 97 21 903 1806 527491592 527492496 0.000000e+00 950.0
3 TraesCS2D01G379000 chr2D 94.314 299 16 1 3473 3770 181312102 181311804 1.320000e-124 457.0
4 TraesCS2D01G379000 chr2A 89.303 3029 201 52 505 3474 627514035 627511071 0.000000e+00 3685.0
5 TraesCS2D01G379000 chr2A 87.486 871 79 16 952 1806 672368235 672369091 0.000000e+00 977.0
6 TraesCS2D01G379000 chr2A 84.323 893 84 34 1913 2773 672369088 672369956 0.000000e+00 822.0
7 TraesCS2D01G379000 chr2A 92.409 303 21 2 3475 3775 475250 474948 8.000000e-117 431.0
8 TraesCS2D01G379000 chr2A 83.750 400 32 20 83 464 627514414 627514030 8.280000e-92 348.0
9 TraesCS2D01G379000 chr2A 85.948 306 30 7 2727 3032 672369962 672370254 8.400000e-82 315.0
10 TraesCS2D01G379000 chr2A 82.222 225 25 9 444 659 672367779 672367997 3.200000e-41 180.0
11 TraesCS2D01G379000 chr2A 92.857 56 4 0 1 56 627514472 627514417 9.280000e-12 82.4
12 TraesCS2D01G379000 chr2B 90.796 2738 140 43 412 3115 568469668 568467009 0.000000e+00 3557.0
13 TraesCS2D01G379000 chr2B 88.736 870 67 20 952 1806 624768114 624768967 0.000000e+00 1035.0
14 TraesCS2D01G379000 chr2B 82.768 708 82 20 2397 3093 624769485 624770163 2.680000e-166 595.0
15 TraesCS2D01G379000 chr2B 89.308 477 41 3 1913 2386 624768964 624769433 1.250000e-164 590.0
16 TraesCS2D01G379000 chr2B 93.529 170 8 3 3101 3269 568466992 568466825 2.400000e-62 250.0
17 TraesCS2D01G379000 chr2B 83.448 290 24 13 121 395 568470013 568469733 8.640000e-62 248.0
18 TraesCS2D01G379000 chr2B 83.246 191 19 8 444 632 624767395 624767574 3.220000e-36 163.0
19 TraesCS2D01G379000 chr2B 92.857 56 4 0 1 56 568470081 568470026 9.280000e-12 82.4
20 TraesCS2D01G379000 chr5A 80.239 1756 216 79 999 2657 683630971 683632692 0.000000e+00 1199.0
21 TraesCS2D01G379000 chr5A 80.182 1756 217 80 999 2657 681899547 681897826 0.000000e+00 1194.0
22 TraesCS2D01G379000 chr5A 77.046 1564 218 94 1528 3027 684647794 684649280 0.000000e+00 769.0
23 TraesCS2D01G379000 chr5A 89.700 466 47 1 998 1462 684646749 684647214 9.640000e-166 593.0
24 TraesCS2D01G379000 chr4D 79.469 1807 233 89 998 2693 500718799 500717020 0.000000e+00 1155.0
25 TraesCS2D01G379000 chr4D 90.435 460 42 2 998 1455 502013345 502013804 4.450000e-169 604.0
26 TraesCS2D01G379000 chr4D 76.276 1332 194 79 1747 3027 502014324 502015584 7.450000e-167 597.0
27 TraesCS2D01G379000 chr4D 93.581 296 18 1 3475 3769 74528905 74529200 1.330000e-119 440.0
28 TraesCS2D01G379000 chr4D 86.897 145 16 2 1524 1665 502013906 502014050 4.170000e-35 159.0
29 TraesCS2D01G379000 chr4B 79.561 1776 215 97 998 2693 644681777 644680070 0.000000e+00 1133.0
30 TraesCS2D01G379000 chr4B 91.048 458 41 0 998 1455 646112709 646113166 1.590000e-173 619.0
31 TraesCS2D01G379000 chr4B 79.532 855 131 30 1747 2571 646114026 646114866 1.620000e-158 569.0
32 TraesCS2D01G379000 chr7D 93.878 294 18 0 3476 3769 228716022 228716315 1.030000e-120 444.0
33 TraesCS2D01G379000 chr7D 93.581 296 18 1 3475 3769 405070099 405070394 1.330000e-119 440.0
34 TraesCS2D01G379000 chr3A 93.046 302 20 1 3470 3770 444288564 444288263 1.330000e-119 440.0
35 TraesCS2D01G379000 chr1A 93.311 299 19 1 3473 3770 561968686 561968984 1.330000e-119 440.0
36 TraesCS2D01G379000 chr6D 93.023 301 20 1 3475 3775 361134618 361134319 4.780000e-119 438.0
37 TraesCS2D01G379000 chr7B 93.266 297 19 1 3475 3770 643379901 643379605 1.720000e-118 436.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G379000 chr2D 483629947 483633973 4026 True 7437.000000 7437 100.000000 1 4027 1 chr2D.!!$R2 4026
1 TraesCS2D01G379000 chr2D 527491592 527493668 2076 False 1047.000000 1144 85.275500 903 3093 2 chr2D.!!$F1 2190
2 TraesCS2D01G379000 chr2A 627511071 627514472 3401 True 1371.800000 3685 88.636667 1 3474 3 chr2A.!!$R2 3473
3 TraesCS2D01G379000 chr2A 672367779 672370254 2475 False 573.500000 977 84.994750 444 3032 4 chr2A.!!$F1 2588
4 TraesCS2D01G379000 chr2B 568466825 568470081 3256 True 1034.350000 3557 90.157500 1 3269 4 chr2B.!!$R1 3268
5 TraesCS2D01G379000 chr2B 624767395 624770163 2768 False 595.750000 1035 86.014500 444 3093 4 chr2B.!!$F1 2649
6 TraesCS2D01G379000 chr5A 683630971 683632692 1721 False 1199.000000 1199 80.239000 999 2657 1 chr5A.!!$F1 1658
7 TraesCS2D01G379000 chr5A 681897826 681899547 1721 True 1194.000000 1194 80.182000 999 2657 1 chr5A.!!$R1 1658
8 TraesCS2D01G379000 chr5A 684646749 684649280 2531 False 681.000000 769 83.373000 998 3027 2 chr5A.!!$F2 2029
9 TraesCS2D01G379000 chr4D 500717020 500718799 1779 True 1155.000000 1155 79.469000 998 2693 1 chr4D.!!$R1 1695
10 TraesCS2D01G379000 chr4D 502013345 502015584 2239 False 453.333333 604 84.536000 998 3027 3 chr4D.!!$F2 2029
11 TraesCS2D01G379000 chr4B 644680070 644681777 1707 True 1133.000000 1133 79.561000 998 2693 1 chr4B.!!$R1 1695
12 TraesCS2D01G379000 chr4B 646112709 646114866 2157 False 594.000000 619 85.290000 998 2571 2 chr4B.!!$F1 1573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 1170 0.249826 GGTTTTCCGTACGTGTGGGA 60.250 55.0 15.21 0.33 0.00 4.37 F
803 1174 0.314935 TTCCGTACGTGTGGGAGTTC 59.685 55.0 15.21 0.00 0.00 3.01 F
2234 4001 0.250901 AATGTGGGCTCGCACTTCTT 60.251 50.0 0.00 0.00 36.09 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2215 3980 0.250901 AAGAAGTGCGAGCCCACATT 60.251 50.000 0.0 0.0 38.18 2.71 R
2463 4304 2.548057 CACAGTTTGTCAGGCGTTATGT 59.452 45.455 0.0 0.0 0.00 2.29 R
3904 5924 0.039617 TTCCGACGCTGCAAAAATGG 60.040 50.000 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.546778 GTGACAACGAGTGGTCAAGAA 58.453 47.619 14.37 0.00 44.83 2.52
37 38 2.933906 GTGACAACGAGTGGTCAAGAAA 59.066 45.455 14.37 0.00 44.83 2.52
71 72 2.831742 CGTGAGGGCGCCTAGGTA 60.832 66.667 28.56 5.82 31.76 3.08
72 73 2.420568 CGTGAGGGCGCCTAGGTAA 61.421 63.158 28.56 3.38 31.76 2.85
73 74 1.442148 GTGAGGGCGCCTAGGTAAG 59.558 63.158 28.56 3.65 31.76 2.34
85 86 4.292977 CCTAGGTAAGGTAAACGTACGG 57.707 50.000 21.06 1.43 40.94 4.02
86 87 2.654749 AGGTAAGGTAAACGTACGGC 57.345 50.000 21.06 6.54 35.25 5.68
87 88 6.777192 CCTAGGTAAGGTAAACGTACGGCG 62.777 54.167 21.06 4.80 42.87 6.46
110 111 0.967887 CGTCCAGCTCCTCTTCCTCA 60.968 60.000 0.00 0.00 0.00 3.86
139 140 2.048503 CCCAACCCTCGTCGTCAC 60.049 66.667 0.00 0.00 0.00 3.67
213 222 2.562298 CACTCTCCACTCAGCTCTTCTT 59.438 50.000 0.00 0.00 0.00 2.52
219 241 2.039613 CCACTCAGCTCTTCTTTTCCCT 59.960 50.000 0.00 0.00 0.00 4.20
274 296 2.437359 ATTCTGGTGCGCCTCAGC 60.437 61.111 18.96 5.45 43.23 4.26
275 297 3.984193 ATTCTGGTGCGCCTCAGCC 62.984 63.158 18.96 8.27 42.30 4.85
283 305 4.154347 CGCCTCAGCCCCTCAGAC 62.154 72.222 0.00 0.00 34.57 3.51
284 306 3.791586 GCCTCAGCCCCTCAGACC 61.792 72.222 0.00 0.00 0.00 3.85
306 328 2.492567 CCCCCTCCTCATCCTCTTCTAG 60.493 59.091 0.00 0.00 0.00 2.43
307 329 2.178984 CCCCTCCTCATCCTCTTCTAGT 59.821 54.545 0.00 0.00 0.00 2.57
308 330 3.399644 CCCCTCCTCATCCTCTTCTAGTA 59.600 52.174 0.00 0.00 0.00 1.82
309 331 4.045334 CCCCTCCTCATCCTCTTCTAGTAT 59.955 50.000 0.00 0.00 0.00 2.12
347 369 7.376866 CACTGTTTTATTACGGATTGATGATGC 59.623 37.037 0.00 0.00 0.00 3.91
350 372 5.590104 TTATTACGGATTGATGATGCACG 57.410 39.130 0.00 0.00 0.00 5.34
351 373 2.880963 TACGGATTGATGATGCACGA 57.119 45.000 0.00 0.00 0.00 4.35
352 374 2.022764 ACGGATTGATGATGCACGAA 57.977 45.000 0.00 0.00 0.00 3.85
353 375 1.665679 ACGGATTGATGATGCACGAAC 59.334 47.619 0.00 0.00 0.00 3.95
395 417 1.361668 CTCCTCGTTTCGTGCCATGG 61.362 60.000 7.63 7.63 0.00 3.66
407 467 2.828520 CGTGCCATGGATAGGAGTAGAT 59.171 50.000 18.40 0.00 0.00 1.98
408 468 3.259374 CGTGCCATGGATAGGAGTAGATT 59.741 47.826 18.40 0.00 0.00 2.40
409 469 4.573900 GTGCCATGGATAGGAGTAGATTG 58.426 47.826 18.40 0.00 0.00 2.67
410 470 3.008375 TGCCATGGATAGGAGTAGATTGC 59.992 47.826 18.40 0.00 0.00 3.56
416 486 8.105829 CCATGGATAGGAGTAGATTGCTAAAAT 58.894 37.037 5.56 0.00 0.00 1.82
430 500 9.860898 AGATTGCTAAAATATTTGTTGTTCCTC 57.139 29.630 0.39 0.00 0.00 3.71
442 512 4.859629 GTTGTTCCTCAACGATGATACC 57.140 45.455 0.00 0.00 45.23 2.73
481 553 1.135517 CCACGTTAATTTGCCCCTTCG 60.136 52.381 0.00 0.00 0.00 3.79
482 554 1.538075 CACGTTAATTTGCCCCTTCGT 59.462 47.619 0.00 0.00 0.00 3.85
483 555 2.030628 CACGTTAATTTGCCCCTTCGTT 60.031 45.455 0.00 0.00 0.00 3.85
484 556 2.227149 ACGTTAATTTGCCCCTTCGTTC 59.773 45.455 0.00 0.00 0.00 3.95
519 594 4.437682 ACCACAGTTCCATTCTTCTTGA 57.562 40.909 0.00 0.00 0.00 3.02
691 1054 3.822403 ATTTGGCGTGTGTGCGTGC 62.822 57.895 0.00 0.00 35.06 5.34
695 1058 4.360027 GCGTGTGTGCGTGCTGAG 62.360 66.667 0.00 0.00 0.00 3.35
696 1059 4.360027 CGTGTGTGCGTGCTGAGC 62.360 66.667 0.00 0.00 0.00 4.26
697 1060 4.017877 GTGTGTGCGTGCTGAGCC 62.018 66.667 0.23 0.00 0.00 4.70
790 1161 3.560896 CGTCTCCTTTTTGGTTTTCCGTA 59.439 43.478 0.00 0.00 44.36 4.02
791 1162 4.553351 CGTCTCCTTTTTGGTTTTCCGTAC 60.553 45.833 0.00 0.00 44.36 3.67
795 1166 3.181498 CCTTTTTGGTTTTCCGTACGTGT 60.181 43.478 15.21 0.00 44.36 4.49
797 1168 1.297664 TTGGTTTTCCGTACGTGTGG 58.702 50.000 15.21 0.00 44.36 4.17
798 1169 0.532417 TGGTTTTCCGTACGTGTGGG 60.532 55.000 15.21 0.00 44.36 4.61
799 1170 0.249826 GGTTTTCCGTACGTGTGGGA 60.250 55.000 15.21 0.33 0.00 4.37
800 1171 1.142474 GTTTTCCGTACGTGTGGGAG 58.858 55.000 15.21 0.00 0.00 4.30
801 1172 0.752054 TTTTCCGTACGTGTGGGAGT 59.248 50.000 15.21 0.00 0.00 3.85
802 1173 0.752054 TTTCCGTACGTGTGGGAGTT 59.248 50.000 15.21 0.00 0.00 3.01
803 1174 0.314935 TTCCGTACGTGTGGGAGTTC 59.685 55.000 15.21 0.00 0.00 3.01
931 1359 4.025647 GCTAACAGAACGCTTCATATGGAC 60.026 45.833 2.13 0.00 0.00 4.02
940 1368 3.681897 CGCTTCATATGGACCATTCTAGC 59.318 47.826 13.40 14.63 0.00 3.42
944 1372 4.756564 TCATATGGACCATTCTAGCTCCT 58.243 43.478 13.40 0.00 0.00 3.69
1291 1719 2.679132 CTACGAGAACGGGGGCATCG 62.679 65.000 0.00 0.00 44.46 3.84
1463 1908 1.731160 GTGAGTTGCTCTCTGATGCAC 59.269 52.381 0.00 0.00 43.13 4.57
1468 1913 1.293963 TGCTCTCTGATGCACGTTGC 61.294 55.000 0.00 3.44 45.29 4.17
1513 2741 2.299521 CCCGTGGTGTTTTTACCTGAA 58.700 47.619 0.00 0.00 41.43 3.02
1675 3142 3.057104 CCGTGGTAAGTAGTGTGTGATCA 60.057 47.826 0.00 0.00 0.00 2.92
1676 3143 4.166523 CGTGGTAAGTAGTGTGTGATCAG 58.833 47.826 0.00 0.00 0.00 2.90
1733 3297 3.386768 TCAGTCTCCTGAAACTTTCCG 57.613 47.619 0.00 0.00 44.67 4.30
1760 3332 4.357947 TCGTGTCAGGCACTCGGC 62.358 66.667 3.09 0.00 45.57 5.54
1810 3382 3.546670 GCTGATTCAGTTTCGGTACGTAG 59.453 47.826 14.90 0.00 43.14 3.51
1832 3404 5.862924 GCAATTTGCTCGCTATATTCCTA 57.137 39.130 14.11 0.00 40.96 2.94
1846 3418 6.480320 GCTATATTCCTAGATTATGCAACCCG 59.520 42.308 0.00 0.00 0.00 5.28
1847 3419 3.485463 TTCCTAGATTATGCAACCCGG 57.515 47.619 0.00 0.00 0.00 5.73
1848 3420 1.697432 TCCTAGATTATGCAACCCGGG 59.303 52.381 22.25 22.25 0.00 5.73
1887 3459 9.368416 ACACTAATATAGGATGTGTGACTGTAT 57.632 33.333 0.00 0.00 39.90 2.29
1907 3479 8.548721 ACTGTATTTCTCTGTTAAACGTCAAAG 58.451 33.333 0.00 0.00 0.00 2.77
1971 3680 4.963373 TCAGTTATTGTTGGTTCGAAGGA 58.037 39.130 0.00 0.00 0.00 3.36
1979 3688 5.160607 TGTTGGTTCGAAGGACTTCATAT 57.839 39.130 12.12 0.00 39.46 1.78
2054 3819 8.197988 ACATGTAACGGAAATCTGAAGAATAC 57.802 34.615 0.00 0.00 0.00 1.89
2055 3820 7.280205 ACATGTAACGGAAATCTGAAGAATACC 59.720 37.037 0.00 0.00 0.00 2.73
2056 3821 6.942976 TGTAACGGAAATCTGAAGAATACCT 58.057 36.000 0.00 0.00 0.00 3.08
2215 3980 8.806429 TTAGCAGGTTTCATATGATCTTTTCA 57.194 30.769 6.17 0.00 39.12 2.69
2222 3987 7.707893 GGTTTCATATGATCTTTTCAATGTGGG 59.292 37.037 6.17 0.00 38.03 4.61
2234 4001 0.250901 AATGTGGGCTCGCACTTCTT 60.251 50.000 0.00 0.00 36.09 2.52
2235 4002 0.250901 ATGTGGGCTCGCACTTCTTT 60.251 50.000 0.00 0.00 36.09 2.52
2236 4003 0.465460 TGTGGGCTCGCACTTCTTTT 60.465 50.000 16.22 0.00 0.00 2.27
2237 4004 1.202710 TGTGGGCTCGCACTTCTTTTA 60.203 47.619 16.22 0.00 0.00 1.52
2327 4109 9.226345 CTGAAGAAAATCAAACAGTTTACAGTC 57.774 33.333 0.00 0.00 0.00 3.51
2331 4113 8.283291 AGAAAATCAAACAGTTTACAGTCGATC 58.717 33.333 0.00 0.00 0.00 3.69
2368 4154 1.610522 CAATATGGTTAGCCTGCCAGC 59.389 52.381 0.00 0.00 38.27 4.85
2387 4180 5.450550 GCCAGCCCATCTATTAAGTTTGAAC 60.451 44.000 0.00 0.00 0.00 3.18
2393 4227 7.148086 GCCCATCTATTAAGTTTGAACATGTCA 60.148 37.037 0.00 0.00 0.00 3.58
2394 4228 8.739039 CCCATCTATTAAGTTTGAACATGTCAA 58.261 33.333 0.00 2.63 44.74 3.18
2463 4304 4.149511 TCTTTGATATTGCGGATCCACA 57.850 40.909 13.41 5.22 0.00 4.17
2703 4585 5.276678 CGCACTGTTTTATTACATACGGAGG 60.277 44.000 0.00 0.00 0.00 4.30
2704 4586 5.813672 GCACTGTTTTATTACATACGGAGGA 59.186 40.000 0.00 0.00 0.00 3.71
2705 4587 6.238022 GCACTGTTTTATTACATACGGAGGAC 60.238 42.308 0.00 0.00 0.00 3.85
2849 4810 5.163982 GCATCGAGGTACAAAAGTGTTACTC 60.164 44.000 0.00 0.00 39.30 2.59
2893 4855 1.609061 CCGATGCTCTCTGTTTGGTGT 60.609 52.381 0.00 0.00 0.00 4.16
2894 4856 1.462283 CGATGCTCTCTGTTTGGTGTG 59.538 52.381 0.00 0.00 0.00 3.82
2895 4857 2.498167 GATGCTCTCTGTTTGGTGTGT 58.502 47.619 0.00 0.00 0.00 3.72
2896 4858 1.667236 TGCTCTCTGTTTGGTGTGTG 58.333 50.000 0.00 0.00 0.00 3.82
2897 4859 0.947244 GCTCTCTGTTTGGTGTGTGG 59.053 55.000 0.00 0.00 0.00 4.17
2915 4885 1.095228 GGGTGTGTGTGTGTGTGGAG 61.095 60.000 0.00 0.00 0.00 3.86
2966 4936 1.922570 CCGTGGAGGAAATACTGTCG 58.077 55.000 0.00 0.00 45.00 4.35
3053 5035 0.538584 CCTATGGAGTGCAGCAGTCA 59.461 55.000 27.91 16.21 35.69 3.41
3054 5036 1.472904 CCTATGGAGTGCAGCAGTCAG 60.473 57.143 27.91 17.86 35.69 3.51
3055 5037 1.206610 CTATGGAGTGCAGCAGTCAGT 59.793 52.381 27.91 18.69 35.69 3.41
3072 5054 6.631016 CAGTCAGTAGTATCCAGCTTGTTTA 58.369 40.000 0.00 0.00 0.00 2.01
3097 5110 1.604604 GTGGCCTTTGCAGTAGTGAA 58.395 50.000 3.32 0.00 40.13 3.18
3098 5111 1.537202 GTGGCCTTTGCAGTAGTGAAG 59.463 52.381 3.32 0.00 40.13 3.02
3099 5112 1.142870 TGGCCTTTGCAGTAGTGAAGT 59.857 47.619 3.32 0.00 40.13 3.01
3237 5250 2.684881 GGCCCATCATCACTTAAGTGTG 59.315 50.000 29.83 25.40 45.76 3.82
3243 5256 5.752472 CCATCATCACTTAAGTGTGCTCTAG 59.248 44.000 29.83 16.71 45.76 2.43
3258 5271 3.636300 TGCTCTAGCTTTTTCCAGCAAAA 59.364 39.130 3.26 0.00 42.84 2.44
3260 5273 4.445718 GCTCTAGCTTTTTCCAGCAAAAAC 59.554 41.667 0.00 0.00 42.84 2.43
3262 5275 5.591099 TCTAGCTTTTTCCAGCAAAAACAG 58.409 37.500 0.00 0.00 42.84 3.16
3285 5301 7.723172 ACAGAAGAAGAAGTGATCCTCAAAAAT 59.277 33.333 0.00 0.00 0.00 1.82
3368 5384 3.650139 CGCCTTGTGAGTAGTACTGTTT 58.350 45.455 7.76 0.00 0.00 2.83
3369 5385 3.428870 CGCCTTGTGAGTAGTACTGTTTG 59.571 47.826 7.76 0.00 0.00 2.93
3370 5386 4.377897 GCCTTGTGAGTAGTACTGTTTGT 58.622 43.478 7.76 0.00 0.00 2.83
3371 5387 4.814771 GCCTTGTGAGTAGTACTGTTTGTT 59.185 41.667 7.76 0.00 0.00 2.83
3378 5394 7.148035 TGTGAGTAGTACTGTTTGTTGACTGTA 60.148 37.037 7.76 0.00 34.24 2.74
3384 5400 3.938963 ACTGTTTGTTGACTGTACCTGTG 59.061 43.478 0.00 0.00 31.10 3.66
3388 5404 0.605589 GTTGACTGTACCTGTGCCCC 60.606 60.000 0.00 0.00 0.00 5.80
3460 5480 2.202349 GCGCCATGTCTTTCACGC 60.202 61.111 0.00 0.00 39.49 5.34
3468 5488 0.817229 TGTCTTTCACGCATGCACCA 60.817 50.000 19.57 0.00 0.00 4.17
3471 5491 2.476534 CTTTCACGCATGCACCACCC 62.477 60.000 19.57 0.00 0.00 4.61
3474 5494 1.673993 CACGCATGCACCACCCTTA 60.674 57.895 19.57 0.00 0.00 2.69
3475 5495 1.377202 ACGCATGCACCACCCTTAG 60.377 57.895 19.57 0.00 0.00 2.18
3476 5496 2.114670 CGCATGCACCACCCTTAGG 61.115 63.158 19.57 0.00 40.04 2.69
3477 5497 2.418083 GCATGCACCACCCTTAGGC 61.418 63.158 14.21 0.00 36.11 3.93
3478 5498 1.754234 CATGCACCACCCTTAGGCC 60.754 63.158 0.00 0.00 36.11 5.19
3479 5499 1.930656 ATGCACCACCCTTAGGCCT 60.931 57.895 11.78 11.78 36.11 5.19
3480 5500 1.509548 ATGCACCACCCTTAGGCCTT 61.510 55.000 12.58 0.00 36.11 4.35
3481 5501 1.378646 GCACCACCCTTAGGCCTTC 60.379 63.158 12.58 0.00 36.11 3.46
3482 5502 1.853250 GCACCACCCTTAGGCCTTCT 61.853 60.000 12.58 0.00 36.11 2.85
3483 5503 0.698818 CACCACCCTTAGGCCTTCTT 59.301 55.000 12.58 0.00 36.11 2.52
3484 5504 1.075536 CACCACCCTTAGGCCTTCTTT 59.924 52.381 12.58 0.00 36.11 2.52
3485 5505 1.075536 ACCACCCTTAGGCCTTCTTTG 59.924 52.381 12.58 1.98 36.11 2.77
3486 5506 1.616994 CCACCCTTAGGCCTTCTTTGG 60.617 57.143 12.58 8.21 36.11 3.28
3487 5507 1.075536 CACCCTTAGGCCTTCTTTGGT 59.924 52.381 12.58 8.53 36.11 3.67
3488 5508 1.787058 ACCCTTAGGCCTTCTTTGGTT 59.213 47.619 12.58 0.00 36.11 3.67
3489 5509 2.225041 ACCCTTAGGCCTTCTTTGGTTC 60.225 50.000 12.58 0.00 36.11 3.62
3490 5510 2.225017 CCCTTAGGCCTTCTTTGGTTCA 60.225 50.000 12.58 0.00 0.00 3.18
3491 5511 3.564352 CCCTTAGGCCTTCTTTGGTTCAT 60.564 47.826 12.58 0.00 0.00 2.57
3492 5512 4.325030 CCCTTAGGCCTTCTTTGGTTCATA 60.325 45.833 12.58 0.00 0.00 2.15
3493 5513 4.884164 CCTTAGGCCTTCTTTGGTTCATAG 59.116 45.833 12.58 0.00 0.00 2.23
3494 5514 3.372440 AGGCCTTCTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
3495 5515 2.919602 AGGCCTTCTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
3496 5516 3.529319 AGGCCTTCTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
3497 5517 4.726825 AGGCCTTCTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
3498 5518 5.066593 GGCCTTCTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
3499 5519 5.163195 GGCCTTCTTTGGTTCATAGGATAGA 60.163 44.000 0.00 0.00 0.00 1.98
3500 5520 5.760743 GCCTTCTTTGGTTCATAGGATAGAC 59.239 44.000 0.00 0.00 0.00 2.59
3501 5521 6.632672 GCCTTCTTTGGTTCATAGGATAGACA 60.633 42.308 0.00 0.00 0.00 3.41
3502 5522 7.512992 CCTTCTTTGGTTCATAGGATAGACAT 58.487 38.462 0.00 0.00 0.00 3.06
3503 5523 7.995488 CCTTCTTTGGTTCATAGGATAGACATT 59.005 37.037 0.00 0.00 0.00 2.71
3504 5524 9.401058 CTTCTTTGGTTCATAGGATAGACATTT 57.599 33.333 0.00 0.00 0.00 2.32
3505 5525 9.753674 TTCTTTGGTTCATAGGATAGACATTTT 57.246 29.630 0.00 0.00 0.00 1.82
3539 5559 8.245701 AGAAAAATCGTAGAAAGTGAGATGAC 57.754 34.615 0.00 0.00 43.58 3.06
3540 5560 7.872993 AGAAAAATCGTAGAAAGTGAGATGACA 59.127 33.333 0.00 0.00 43.58 3.58
3541 5561 8.553459 AAAAATCGTAGAAAGTGAGATGACAT 57.447 30.769 0.00 0.00 43.58 3.06
3542 5562 7.531280 AAATCGTAGAAAGTGAGATGACATG 57.469 36.000 0.00 0.00 43.58 3.21
3543 5563 4.424626 TCGTAGAAAGTGAGATGACATGC 58.575 43.478 0.00 0.00 0.00 4.06
3544 5564 4.082245 TCGTAGAAAGTGAGATGACATGCA 60.082 41.667 0.00 0.00 0.00 3.96
3545 5565 4.807834 CGTAGAAAGTGAGATGACATGCAT 59.192 41.667 0.00 0.00 40.77 3.96
3557 5577 3.959293 TGACATGCATCTCAATTCCTGT 58.041 40.909 1.73 0.00 0.00 4.00
3558 5578 5.101648 TGACATGCATCTCAATTCCTGTA 57.898 39.130 1.73 0.00 0.00 2.74
3559 5579 5.121105 TGACATGCATCTCAATTCCTGTAG 58.879 41.667 1.73 0.00 0.00 2.74
3560 5580 5.104817 TGACATGCATCTCAATTCCTGTAGA 60.105 40.000 1.73 0.00 0.00 2.59
3561 5581 5.366460 ACATGCATCTCAATTCCTGTAGAG 58.634 41.667 0.00 0.00 0.00 2.43
3562 5582 4.412796 TGCATCTCAATTCCTGTAGAGG 57.587 45.455 0.00 0.00 41.39 3.69
3576 5596 7.979786 TCCTGTAGAGGAAGAGATGTTATTT 57.020 36.000 6.06 0.00 46.19 1.40
3577 5597 7.786030 TCCTGTAGAGGAAGAGATGTTATTTG 58.214 38.462 6.06 0.00 46.19 2.32
3578 5598 7.619698 TCCTGTAGAGGAAGAGATGTTATTTGA 59.380 37.037 6.06 0.00 46.19 2.69
3579 5599 8.428063 CCTGTAGAGGAAGAGATGTTATTTGAT 58.572 37.037 0.00 0.00 42.93 2.57
3580 5600 9.258826 CTGTAGAGGAAGAGATGTTATTTGATG 57.741 37.037 0.00 0.00 0.00 3.07
3581 5601 7.712639 TGTAGAGGAAGAGATGTTATTTGATGC 59.287 37.037 0.00 0.00 0.00 3.91
3582 5602 6.656902 AGAGGAAGAGATGTTATTTGATGCA 58.343 36.000 0.00 0.00 0.00 3.96
3583 5603 7.288560 AGAGGAAGAGATGTTATTTGATGCAT 58.711 34.615 0.00 0.00 0.00 3.96
3584 5604 8.435187 AGAGGAAGAGATGTTATTTGATGCATA 58.565 33.333 0.00 0.00 0.00 3.14
3585 5605 8.618702 AGGAAGAGATGTTATTTGATGCATAG 57.381 34.615 0.00 0.00 0.00 2.23
3586 5606 7.664731 AGGAAGAGATGTTATTTGATGCATAGG 59.335 37.037 0.00 0.00 0.00 2.57
3587 5607 7.663081 GGAAGAGATGTTATTTGATGCATAGGA 59.337 37.037 0.00 0.00 0.00 2.94
3588 5608 9.228949 GAAGAGATGTTATTTGATGCATAGGAT 57.771 33.333 0.00 0.00 0.00 3.24
3590 5610 9.887629 AGAGATGTTATTTGATGCATAGGATAG 57.112 33.333 0.00 0.00 0.00 2.08
3591 5611 9.107177 GAGATGTTATTTGATGCATAGGATAGG 57.893 37.037 0.00 0.00 0.00 2.57
3592 5612 8.829746 AGATGTTATTTGATGCATAGGATAGGA 58.170 33.333 0.00 0.00 0.00 2.94
3593 5613 9.453572 GATGTTATTTGATGCATAGGATAGGAA 57.546 33.333 0.00 0.00 0.00 3.36
3594 5614 9.986157 ATGTTATTTGATGCATAGGATAGGAAT 57.014 29.630 0.00 0.00 0.00 3.01
3595 5615 9.812347 TGTTATTTGATGCATAGGATAGGAATT 57.188 29.630 0.00 0.00 0.00 2.17
3600 5620 9.425248 TTTGATGCATAGGATAGGAATTTTTCT 57.575 29.630 0.00 0.00 0.00 2.52
3613 5633 9.785982 ATAGGAATTTTTCTATTGAGTCTAGGC 57.214 33.333 0.00 0.00 0.00 3.93
3614 5634 7.866870 AGGAATTTTTCTATTGAGTCTAGGCT 58.133 34.615 0.00 0.00 0.00 4.58
3615 5635 8.993424 AGGAATTTTTCTATTGAGTCTAGGCTA 58.007 33.333 0.00 0.00 0.00 3.93
3616 5636 9.614792 GGAATTTTTCTATTGAGTCTAGGCTAA 57.385 33.333 0.00 0.00 0.00 3.09
3620 5640 9.959721 TTTTTCTATTGAGTCTAGGCTAATGTT 57.040 29.630 0.00 0.00 0.00 2.71
3621 5641 9.959721 TTTTCTATTGAGTCTAGGCTAATGTTT 57.040 29.630 0.00 0.00 0.00 2.83
3622 5642 9.959721 TTTCTATTGAGTCTAGGCTAATGTTTT 57.040 29.630 0.00 0.00 0.00 2.43
3623 5643 9.959721 TTCTATTGAGTCTAGGCTAATGTTTTT 57.040 29.630 0.00 0.00 0.00 1.94
3624 5644 9.601217 TCTATTGAGTCTAGGCTAATGTTTTTC 57.399 33.333 0.00 0.00 0.00 2.29
3625 5645 9.606631 CTATTGAGTCTAGGCTAATGTTTTTCT 57.393 33.333 0.00 0.00 0.00 2.52
3626 5646 7.907214 TTGAGTCTAGGCTAATGTTTTTCTC 57.093 36.000 0.00 0.00 0.00 2.87
3627 5647 6.407202 TGAGTCTAGGCTAATGTTTTTCTCC 58.593 40.000 0.00 0.00 0.00 3.71
3628 5648 6.213600 TGAGTCTAGGCTAATGTTTTTCTCCT 59.786 38.462 0.00 0.00 0.00 3.69
3629 5649 6.645306 AGTCTAGGCTAATGTTTTTCTCCTC 58.355 40.000 0.00 0.00 0.00 3.71
3630 5650 5.818336 GTCTAGGCTAATGTTTTTCTCCTCC 59.182 44.000 0.00 0.00 0.00 4.30
3631 5651 4.657814 AGGCTAATGTTTTTCTCCTCCA 57.342 40.909 0.00 0.00 0.00 3.86
3632 5652 4.998051 AGGCTAATGTTTTTCTCCTCCAA 58.002 39.130 0.00 0.00 0.00 3.53
3633 5653 5.393866 AGGCTAATGTTTTTCTCCTCCAAA 58.606 37.500 0.00 0.00 0.00 3.28
3634 5654 5.838521 AGGCTAATGTTTTTCTCCTCCAAAA 59.161 36.000 0.00 0.00 0.00 2.44
3635 5655 6.498303 AGGCTAATGTTTTTCTCCTCCAAAAT 59.502 34.615 0.00 0.00 0.00 1.82
3636 5656 6.591448 GGCTAATGTTTTTCTCCTCCAAAATG 59.409 38.462 0.00 0.00 0.00 2.32
3637 5657 7.154656 GCTAATGTTTTTCTCCTCCAAAATGT 58.845 34.615 0.00 0.00 0.00 2.71
3638 5658 8.303876 GCTAATGTTTTTCTCCTCCAAAATGTA 58.696 33.333 0.00 0.00 0.00 2.29
3641 5661 9.546428 AATGTTTTTCTCCTCCAAAATGTAAAG 57.454 29.630 0.00 0.00 0.00 1.85
3642 5662 7.496747 TGTTTTTCTCCTCCAAAATGTAAAGG 58.503 34.615 0.00 0.00 0.00 3.11
3643 5663 7.343316 TGTTTTTCTCCTCCAAAATGTAAAGGA 59.657 33.333 0.00 0.00 34.97 3.36
3644 5664 8.367911 GTTTTTCTCCTCCAAAATGTAAAGGAT 58.632 33.333 0.00 0.00 35.65 3.24
3645 5665 8.491045 TTTTCTCCTCCAAAATGTAAAGGATT 57.509 30.769 0.00 0.00 35.65 3.01
3646 5666 7.466746 TTCTCCTCCAAAATGTAAAGGATTG 57.533 36.000 0.00 0.00 35.65 2.67
3647 5667 6.789268 TCTCCTCCAAAATGTAAAGGATTGA 58.211 36.000 0.00 0.00 35.65 2.57
3648 5668 7.413446 TCTCCTCCAAAATGTAAAGGATTGAT 58.587 34.615 0.00 0.00 35.65 2.57
3649 5669 7.895429 TCTCCTCCAAAATGTAAAGGATTGATT 59.105 33.333 0.00 0.00 35.65 2.57
3650 5670 8.066612 TCCTCCAAAATGTAAAGGATTGATTC 57.933 34.615 0.00 0.00 31.25 2.52
3651 5671 7.124147 TCCTCCAAAATGTAAAGGATTGATTCC 59.876 37.037 0.00 0.00 45.85 3.01
3694 5714 9.996554 AAAAATCCATTCTTACAAACTAAAGGG 57.003 29.630 0.00 0.00 0.00 3.95
3695 5715 6.775594 ATCCATTCTTACAAACTAAAGGGC 57.224 37.500 0.00 0.00 0.00 5.19
3696 5716 5.887754 TCCATTCTTACAAACTAAAGGGCT 58.112 37.500 0.00 0.00 0.00 5.19
3697 5717 6.311735 TCCATTCTTACAAACTAAAGGGCTT 58.688 36.000 0.00 0.00 0.00 4.35
3698 5718 6.780522 TCCATTCTTACAAACTAAAGGGCTTT 59.219 34.615 0.00 0.00 36.63 3.51
3699 5719 7.945664 TCCATTCTTACAAACTAAAGGGCTTTA 59.054 33.333 0.00 0.00 34.23 1.85
3700 5720 8.581578 CCATTCTTACAAACTAAAGGGCTTTAA 58.418 33.333 0.00 0.00 34.95 1.52
3701 5721 9.974980 CATTCTTACAAACTAAAGGGCTTTAAA 57.025 29.630 0.00 0.00 34.95 1.52
3703 5723 8.983702 TCTTACAAACTAAAGGGCTTTAAAGA 57.016 30.769 19.48 0.00 34.95 2.52
3704 5724 9.411189 TCTTACAAACTAAAGGGCTTTAAAGAA 57.589 29.630 19.48 0.00 34.95 2.52
3708 5728 9.899661 ACAAACTAAAGGGCTTTAAAGAAATTT 57.100 25.926 19.48 15.59 34.95 1.82
3712 5732 9.555727 ACTAAAGGGCTTTAAAGAAATTTTTCC 57.444 29.630 19.48 7.45 35.08 3.13
3713 5733 9.778741 CTAAAGGGCTTTAAAGAAATTTTTCCT 57.221 29.630 19.48 8.23 35.08 3.36
3715 5735 9.474313 AAAGGGCTTTAAAGAAATTTTTCCTTT 57.526 25.926 19.48 16.66 37.92 3.11
3716 5736 8.450578 AGGGCTTTAAAGAAATTTTTCCTTTG 57.549 30.769 19.48 0.44 37.92 2.77
3717 5737 7.013274 AGGGCTTTAAAGAAATTTTTCCTTTGC 59.987 33.333 19.48 7.78 37.92 3.68
3718 5738 6.850823 GGCTTTAAAGAAATTTTTCCTTTGCG 59.149 34.615 19.48 3.97 37.92 4.85
3719 5739 7.254624 GGCTTTAAAGAAATTTTTCCTTTGCGA 60.255 33.333 19.48 0.00 37.92 5.10
3720 5740 8.119845 GCTTTAAAGAAATTTTTCCTTTGCGAA 58.880 29.630 19.48 0.00 37.92 4.70
3723 5743 6.785488 AAGAAATTTTTCCTTTGCGAATCC 57.215 33.333 0.00 0.00 37.92 3.01
3724 5744 6.101650 AGAAATTTTTCCTTTGCGAATCCT 57.898 33.333 0.00 0.00 37.92 3.24
3725 5745 7.227049 AGAAATTTTTCCTTTGCGAATCCTA 57.773 32.000 0.00 0.00 37.92 2.94
3726 5746 7.840931 AGAAATTTTTCCTTTGCGAATCCTAT 58.159 30.769 0.00 0.00 37.92 2.57
3727 5747 7.976175 AGAAATTTTTCCTTTGCGAATCCTATC 59.024 33.333 0.00 0.00 37.92 2.08
3728 5748 5.576447 TTTTTCCTTTGCGAATCCTATCC 57.424 39.130 0.00 0.00 0.00 2.59
3729 5749 4.503714 TTTCCTTTGCGAATCCTATCCT 57.496 40.909 0.00 0.00 0.00 3.24
3730 5750 5.623956 TTTCCTTTGCGAATCCTATCCTA 57.376 39.130 0.00 0.00 0.00 2.94
3731 5751 5.825593 TTCCTTTGCGAATCCTATCCTAT 57.174 39.130 0.00 0.00 0.00 2.57
3732 5752 6.928348 TTCCTTTGCGAATCCTATCCTATA 57.072 37.500 0.00 0.00 0.00 1.31
3733 5753 6.531503 TCCTTTGCGAATCCTATCCTATAG 57.468 41.667 0.00 0.00 0.00 1.31
3734 5754 6.253758 TCCTTTGCGAATCCTATCCTATAGA 58.746 40.000 0.00 0.00 0.00 1.98
3735 5755 6.724441 TCCTTTGCGAATCCTATCCTATAGAA 59.276 38.462 0.00 0.00 0.00 2.10
3736 5756 7.400339 TCCTTTGCGAATCCTATCCTATAGAAT 59.600 37.037 0.00 0.00 0.00 2.40
3737 5757 8.043710 CCTTTGCGAATCCTATCCTATAGAATT 58.956 37.037 0.00 0.00 0.00 2.17
3738 5758 9.092876 CTTTGCGAATCCTATCCTATAGAATTC 57.907 37.037 0.00 0.00 0.00 2.17
3739 5759 7.113658 TGCGAATCCTATCCTATAGAATTCC 57.886 40.000 0.00 0.00 0.00 3.01
3740 5760 6.897966 TGCGAATCCTATCCTATAGAATTCCT 59.102 38.462 0.00 0.00 0.00 3.36
3741 5761 8.059461 TGCGAATCCTATCCTATAGAATTCCTA 58.941 37.037 0.00 0.00 0.00 2.94
3742 5762 9.084533 GCGAATCCTATCCTATAGAATTCCTAT 57.915 37.037 0.00 2.68 40.92 2.57
3763 5783 9.250246 TCCTATAAAATTCCTACAAACCAAAGG 57.750 33.333 0.00 0.00 0.00 3.11
3764 5784 9.250246 CCTATAAAATTCCTACAAACCAAAGGA 57.750 33.333 0.00 0.00 37.64 3.36
3766 5786 6.419484 AAAATTCCTACAAACCAAAGGAGG 57.581 37.500 0.00 0.00 40.43 4.30
3767 5787 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
3768 5788 1.074889 TCCTACAAACCAAAGGAGGCC 59.925 52.381 0.00 0.00 34.46 5.19
3769 5789 1.075536 CCTACAAACCAAAGGAGGCCT 59.924 52.381 3.86 3.86 33.87 5.19
3770 5790 2.162681 CTACAAACCAAAGGAGGCCTG 58.837 52.381 12.00 0.00 32.13 4.85
3771 5791 0.555769 ACAAACCAAAGGAGGCCTGA 59.444 50.000 12.00 0.00 32.13 3.86
3772 5792 1.147817 ACAAACCAAAGGAGGCCTGAT 59.852 47.619 12.00 0.00 32.13 2.90
3773 5793 2.250924 CAAACCAAAGGAGGCCTGATT 58.749 47.619 12.00 0.28 32.13 2.57
3774 5794 1.928868 AACCAAAGGAGGCCTGATTG 58.071 50.000 12.00 12.45 32.13 2.67
3775 5795 0.040204 ACCAAAGGAGGCCTGATTGG 59.960 55.000 27.48 27.48 43.49 3.16
3776 5796 0.685458 CCAAAGGAGGCCTGATTGGG 60.685 60.000 23.97 16.09 37.68 4.12
3777 5797 0.685458 CAAAGGAGGCCTGATTGGGG 60.685 60.000 12.00 0.00 32.13 4.96
3778 5798 0.850883 AAAGGAGGCCTGATTGGGGA 60.851 55.000 12.00 0.00 32.13 4.81
3779 5799 1.575447 AAGGAGGCCTGATTGGGGAC 61.575 60.000 12.00 0.00 32.13 4.46
3791 5811 2.590092 GGGGACCGAGGAACCATG 59.410 66.667 0.00 0.00 40.86 3.66
3792 5812 1.993391 GGGGACCGAGGAACCATGA 60.993 63.158 0.00 0.00 40.86 3.07
3793 5813 1.221021 GGGACCGAGGAACCATGAC 59.779 63.158 0.00 0.00 0.00 3.06
3794 5814 1.221021 GGACCGAGGAACCATGACC 59.779 63.158 0.00 0.00 0.00 4.02
3795 5815 1.265454 GGACCGAGGAACCATGACCT 61.265 60.000 0.00 0.00 39.41 3.85
3796 5816 0.613777 GACCGAGGAACCATGACCTT 59.386 55.000 0.00 0.00 36.57 3.50
3797 5817 0.613777 ACCGAGGAACCATGACCTTC 59.386 55.000 0.00 0.00 36.57 3.46
3798 5818 0.107654 CCGAGGAACCATGACCTTCC 60.108 60.000 0.00 1.36 36.57 3.46
3800 5820 1.406069 CGAGGAACCATGACCTTCCTG 60.406 57.143 18.73 10.56 45.33 3.86
3801 5821 0.995024 AGGAACCATGACCTTCCTGG 59.005 55.000 14.96 0.00 43.95 4.45
3802 5822 0.681243 GGAACCATGACCTTCCTGGC 60.681 60.000 0.00 0.00 35.85 4.85
3803 5823 1.002134 AACCATGACCTTCCTGGCG 60.002 57.895 0.00 0.00 35.85 5.69
3804 5824 2.825836 CCATGACCTTCCTGGCGC 60.826 66.667 0.00 0.00 40.22 6.53
3805 5825 2.046023 CATGACCTTCCTGGCGCA 60.046 61.111 10.83 0.00 40.22 6.09
3806 5826 1.452651 CATGACCTTCCTGGCGCAT 60.453 57.895 10.83 0.00 40.22 4.73
3807 5827 1.452651 ATGACCTTCCTGGCGCATG 60.453 57.895 10.83 0.00 40.22 4.06
3808 5828 3.512516 GACCTTCCTGGCGCATGC 61.513 66.667 10.83 7.91 40.22 4.06
3809 5829 3.984193 GACCTTCCTGGCGCATGCT 62.984 63.158 17.13 0.00 42.25 3.79
3810 5830 2.753043 CCTTCCTGGCGCATGCTT 60.753 61.111 17.13 0.00 42.25 3.91
3811 5831 1.451927 CCTTCCTGGCGCATGCTTA 60.452 57.895 17.13 0.48 42.25 3.09
3812 5832 0.820891 CCTTCCTGGCGCATGCTTAT 60.821 55.000 17.13 0.00 42.25 1.73
3813 5833 0.590195 CTTCCTGGCGCATGCTTATC 59.410 55.000 17.13 2.93 42.25 1.75
3814 5834 1.159713 TTCCTGGCGCATGCTTATCG 61.160 55.000 17.13 0.00 42.25 2.92
3815 5835 1.889105 CCTGGCGCATGCTTATCGT 60.889 57.895 17.13 0.00 42.25 3.73
3816 5836 1.439353 CCTGGCGCATGCTTATCGTT 61.439 55.000 17.13 0.00 42.25 3.85
3817 5837 0.378257 CTGGCGCATGCTTATCGTTT 59.622 50.000 17.13 0.00 42.25 3.60
3818 5838 0.376852 TGGCGCATGCTTATCGTTTC 59.623 50.000 17.13 0.00 42.25 2.78
3819 5839 0.317020 GGCGCATGCTTATCGTTTCC 60.317 55.000 17.13 0.00 42.25 3.13
3820 5840 0.654472 GCGCATGCTTATCGTTTCCG 60.654 55.000 17.13 0.00 38.39 4.30
3821 5841 0.654472 CGCATGCTTATCGTTTCCGC 60.654 55.000 17.13 0.00 0.00 5.54
3822 5842 0.376852 GCATGCTTATCGTTTCCGCA 59.623 50.000 11.37 0.00 34.83 5.69
3823 5843 1.202132 GCATGCTTATCGTTTCCGCAA 60.202 47.619 11.37 0.00 33.94 4.85
3824 5844 2.708514 CATGCTTATCGTTTCCGCAAG 58.291 47.619 0.00 0.00 33.94 4.01
3825 5845 1.803334 TGCTTATCGTTTCCGCAAGT 58.197 45.000 0.00 0.00 32.06 3.16
3826 5846 2.962125 TGCTTATCGTTTCCGCAAGTA 58.038 42.857 0.00 0.00 32.06 2.24
3827 5847 2.669434 TGCTTATCGTTTCCGCAAGTAC 59.331 45.455 0.00 0.00 32.06 2.73
3828 5848 2.284855 GCTTATCGTTTCCGCAAGTACG 60.285 50.000 0.00 0.00 36.49 3.67
3829 5849 2.634982 TATCGTTTCCGCAAGTACGT 57.365 45.000 0.00 0.00 36.53 3.57
3830 5850 2.634982 ATCGTTTCCGCAAGTACGTA 57.365 45.000 0.00 0.00 36.53 3.57
3831 5851 2.414058 TCGTTTCCGCAAGTACGTAA 57.586 45.000 0.00 0.00 36.53 3.18
3832 5852 2.736978 TCGTTTCCGCAAGTACGTAAA 58.263 42.857 0.00 0.00 36.53 2.01
3833 5853 3.316283 TCGTTTCCGCAAGTACGTAAAT 58.684 40.909 0.00 0.00 36.53 1.40
3834 5854 3.740321 TCGTTTCCGCAAGTACGTAAATT 59.260 39.130 0.00 0.00 36.53 1.82
3835 5855 3.836348 CGTTTCCGCAAGTACGTAAATTG 59.164 43.478 14.47 14.47 32.49 2.32
3836 5856 4.153256 GTTTCCGCAAGTACGTAAATTGG 58.847 43.478 18.38 9.03 0.00 3.16
3837 5857 1.733360 TCCGCAAGTACGTAAATTGGC 59.267 47.619 18.38 11.95 0.00 4.52
3838 5858 1.528198 CCGCAAGTACGTAAATTGGCG 60.528 52.381 18.38 19.09 0.00 5.69
3839 5859 1.530856 GCAAGTACGTAAATTGGCGC 58.469 50.000 18.38 0.00 0.00 6.53
3840 5860 1.792632 GCAAGTACGTAAATTGGCGCC 60.793 52.381 22.73 22.73 0.00 6.53
3841 5861 1.465387 CAAGTACGTAAATTGGCGCCA 59.535 47.619 29.03 29.03 0.00 5.69
3842 5862 1.365699 AGTACGTAAATTGGCGCCAG 58.634 50.000 30.75 19.37 0.00 4.85
3843 5863 1.066716 AGTACGTAAATTGGCGCCAGA 60.067 47.619 30.75 20.62 0.00 3.86
3844 5864 1.733360 GTACGTAAATTGGCGCCAGAA 59.267 47.619 30.75 17.38 0.00 3.02
3845 5865 1.240256 ACGTAAATTGGCGCCAGAAA 58.760 45.000 30.75 16.50 0.00 2.52
3846 5866 1.199097 ACGTAAATTGGCGCCAGAAAG 59.801 47.619 30.75 20.89 0.00 2.62
3847 5867 1.466950 CGTAAATTGGCGCCAGAAAGA 59.533 47.619 30.75 15.62 0.00 2.52
3848 5868 2.095466 CGTAAATTGGCGCCAGAAAGAA 60.095 45.455 30.75 14.75 0.00 2.52
3849 5869 2.438868 AAATTGGCGCCAGAAAGAAC 57.561 45.000 30.75 0.00 0.00 3.01
3850 5870 1.620822 AATTGGCGCCAGAAAGAACT 58.379 45.000 30.75 0.00 0.00 3.01
3851 5871 1.168714 ATTGGCGCCAGAAAGAACTC 58.831 50.000 30.75 0.00 0.00 3.01
3852 5872 0.108585 TTGGCGCCAGAAAGAACTCT 59.891 50.000 30.75 0.00 0.00 3.24
3853 5873 0.973632 TGGCGCCAGAAAGAACTCTA 59.026 50.000 29.03 0.00 0.00 2.43
3854 5874 1.337823 TGGCGCCAGAAAGAACTCTAC 60.338 52.381 29.03 0.00 0.00 2.59
3855 5875 1.066787 GGCGCCAGAAAGAACTCTACT 60.067 52.381 24.80 0.00 0.00 2.57
3856 5876 1.996191 GCGCCAGAAAGAACTCTACTG 59.004 52.381 0.00 0.00 33.49 2.74
3857 5877 2.610727 GCGCCAGAAAGAACTCTACTGT 60.611 50.000 0.00 0.00 32.56 3.55
3858 5878 2.989840 CGCCAGAAAGAACTCTACTGTG 59.010 50.000 10.70 5.96 32.56 3.66
3859 5879 3.330267 GCCAGAAAGAACTCTACTGTGG 58.670 50.000 10.70 6.75 32.56 4.17
3860 5880 3.866449 GCCAGAAAGAACTCTACTGTGGG 60.866 52.174 10.70 0.00 32.56 4.61
3861 5881 3.330267 CAGAAAGAACTCTACTGTGGGC 58.670 50.000 0.00 0.00 0.00 5.36
3862 5882 2.028930 AGAAAGAACTCTACTGTGGGCG 60.029 50.000 0.00 0.00 0.00 6.13
3863 5883 1.339097 AAGAACTCTACTGTGGGCGT 58.661 50.000 0.00 0.00 0.00 5.68
3864 5884 2.211250 AGAACTCTACTGTGGGCGTA 57.789 50.000 0.00 0.00 0.00 4.42
3865 5885 1.817447 AGAACTCTACTGTGGGCGTAC 59.183 52.381 0.00 0.00 0.00 3.67
3866 5886 0.524862 AACTCTACTGTGGGCGTACG 59.475 55.000 11.84 11.84 0.00 3.67
3867 5887 1.310933 ACTCTACTGTGGGCGTACGG 61.311 60.000 18.39 1.02 0.00 4.02
3868 5888 2.001361 CTCTACTGTGGGCGTACGGG 62.001 65.000 18.39 0.00 0.00 5.28
3869 5889 3.069946 TACTGTGGGCGTACGGGG 61.070 66.667 18.39 0.00 0.00 5.73
3870 5890 3.884704 TACTGTGGGCGTACGGGGT 62.885 63.158 18.39 0.00 0.00 4.95
3871 5891 4.752879 CTGTGGGCGTACGGGGTG 62.753 72.222 18.39 0.00 0.00 4.61
3910 5930 4.759096 GCACGAGCGCGCCATTTT 62.759 61.111 30.33 8.95 42.48 1.82
3911 5931 2.126888 CACGAGCGCGCCATTTTT 60.127 55.556 30.33 8.00 42.48 1.94
3912 5932 2.126888 ACGAGCGCGCCATTTTTG 60.127 55.556 30.33 15.48 42.48 2.44
3913 5933 3.535491 CGAGCGCGCCATTTTTGC 61.535 61.111 30.33 6.12 0.00 3.68
3914 5934 2.430582 GAGCGCGCCATTTTTGCA 60.431 55.556 30.33 0.00 0.00 4.08
3915 5935 2.431260 AGCGCGCCATTTTTGCAG 60.431 55.556 30.33 0.00 0.00 4.41
3916 5936 4.138109 GCGCGCCATTTTTGCAGC 62.138 61.111 23.24 0.00 0.00 5.25
3919 5939 3.451250 CGCCATTTTTGCAGCGTC 58.549 55.556 7.52 0.00 43.45 5.19
3920 5940 2.427765 CGCCATTTTTGCAGCGTCG 61.428 57.895 7.52 0.00 43.45 5.12
3921 5941 2.088178 GCCATTTTTGCAGCGTCGG 61.088 57.895 0.00 0.00 0.00 4.79
3922 5942 1.578926 CCATTTTTGCAGCGTCGGA 59.421 52.632 0.00 0.00 0.00 4.55
3923 5943 0.039617 CCATTTTTGCAGCGTCGGAA 60.040 50.000 0.00 0.00 0.00 4.30
3924 5944 1.601663 CCATTTTTGCAGCGTCGGAAA 60.602 47.619 0.00 0.00 0.00 3.13
3925 5945 2.123342 CATTTTTGCAGCGTCGGAAAA 58.877 42.857 0.00 2.44 34.83 2.29
3926 5946 1.551145 TTTTTGCAGCGTCGGAAAAC 58.449 45.000 5.41 0.00 36.15 2.43
3927 5947 0.248702 TTTTGCAGCGTCGGAAAACC 60.249 50.000 0.00 0.00 32.14 3.27
3928 5948 2.381665 TTTGCAGCGTCGGAAAACCG 62.382 55.000 0.00 0.00 0.00 4.44
3929 5949 4.084888 GCAGCGTCGGAAAACCGG 62.085 66.667 0.00 0.00 0.00 5.28
3930 5950 4.084888 CAGCGTCGGAAAACCGGC 62.085 66.667 0.00 6.01 34.21 6.13
3935 5955 4.629523 TCGGAAAACCGGCCGCTT 62.630 61.111 22.85 10.54 46.79 4.68
3936 5956 4.097863 CGGAAAACCGGCCGCTTC 62.098 66.667 22.85 20.45 41.17 3.86
3937 5957 2.671963 GGAAAACCGGCCGCTTCT 60.672 61.111 22.85 0.00 0.00 2.85
3938 5958 2.687805 GGAAAACCGGCCGCTTCTC 61.688 63.158 22.85 9.13 0.00 2.87
3939 5959 3.023591 GAAAACCGGCCGCTTCTCG 62.024 63.158 22.85 7.58 38.08 4.04
3966 5986 4.072088 CGCGGTTGCACTCGGAAC 62.072 66.667 0.00 0.00 42.35 3.62
3967 5987 2.970324 GCGGTTGCACTCGGAACA 60.970 61.111 9.48 0.00 44.69 3.18
3968 5988 2.539338 GCGGTTGCACTCGGAACAA 61.539 57.895 9.48 0.00 44.69 2.83
3969 5989 1.278637 CGGTTGCACTCGGAACAAC 59.721 57.895 8.79 8.79 44.69 3.32
3970 5990 1.652563 GGTTGCACTCGGAACAACC 59.347 57.895 16.67 16.67 44.69 3.77
3971 5991 1.652563 GTTGCACTCGGAACAACCC 59.347 57.895 0.00 0.00 42.60 4.11
3972 5992 1.527380 TTGCACTCGGAACAACCCC 60.527 57.895 0.00 0.00 34.64 4.95
3973 5993 2.112297 GCACTCGGAACAACCCCA 59.888 61.111 0.00 0.00 34.64 4.96
3974 5994 2.258726 GCACTCGGAACAACCCCAC 61.259 63.158 0.00 0.00 34.64 4.61
3975 5995 1.959226 CACTCGGAACAACCCCACG 60.959 63.158 0.00 0.00 34.64 4.94
3976 5996 2.424302 CTCGGAACAACCCCACGT 59.576 61.111 0.00 0.00 34.64 4.49
3977 5997 1.666872 CTCGGAACAACCCCACGTC 60.667 63.158 0.00 0.00 34.64 4.34
3978 5998 2.095978 CTCGGAACAACCCCACGTCT 62.096 60.000 0.00 0.00 34.64 4.18
3979 5999 1.227734 CGGAACAACCCCACGTCTT 60.228 57.895 0.00 0.00 34.64 3.01
3980 6000 1.503818 CGGAACAACCCCACGTCTTG 61.504 60.000 0.00 0.00 34.64 3.02
3981 6001 0.179040 GGAACAACCCCACGTCTTGA 60.179 55.000 0.00 0.00 0.00 3.02
3982 6002 1.544759 GGAACAACCCCACGTCTTGAT 60.545 52.381 0.00 0.00 0.00 2.57
3983 6003 1.804748 GAACAACCCCACGTCTTGATC 59.195 52.381 0.00 0.00 0.00 2.92
3984 6004 0.762418 ACAACCCCACGTCTTGATCA 59.238 50.000 0.00 0.00 0.00 2.92
3985 6005 1.156736 CAACCCCACGTCTTGATCAC 58.843 55.000 0.00 0.00 0.00 3.06
3986 6006 0.320421 AACCCCACGTCTTGATCACG 60.320 55.000 0.00 0.00 43.13 4.35
3987 6007 2.100631 CCCCACGTCTTGATCACGC 61.101 63.158 0.00 0.00 41.10 5.34
3988 6008 2.444624 CCCACGTCTTGATCACGCG 61.445 63.158 3.53 3.53 41.10 6.01
3989 6009 2.444624 CCACGTCTTGATCACGCGG 61.445 63.158 12.47 8.38 41.10 6.46
3990 6010 2.809601 ACGTCTTGATCACGCGGC 60.810 61.111 12.47 0.00 41.10 6.53
3991 6011 3.902063 CGTCTTGATCACGCGGCG 61.902 66.667 22.36 22.36 0.00 6.46
3992 6012 3.554692 GTCTTGATCACGCGGCGG 61.555 66.667 27.37 15.35 0.00 6.13
3993 6013 4.812476 TCTTGATCACGCGGCGGG 62.812 66.667 27.37 24.16 0.00 6.13
4007 6027 3.402681 CGGGTGCCACCAGGAGAT 61.403 66.667 17.22 0.00 41.02 2.75
4008 6028 2.273449 GGGTGCCACCAGGAGATG 59.727 66.667 17.22 0.00 41.02 2.90
4017 6037 3.976339 CCAGGAGATGGCTAGAACG 57.024 57.895 0.00 0.00 43.83 3.95
4018 6038 0.390860 CCAGGAGATGGCTAGAACGG 59.609 60.000 0.00 0.00 43.83 4.44
4019 6039 0.249657 CAGGAGATGGCTAGAACGGC 60.250 60.000 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.760875 CCTTACCTAGGCGCCCTCA 60.761 63.158 26.15 7.96 37.17 3.86
64 65 6.777192 CGCCGTACGTTTACCTTACCTAGG 62.777 54.167 15.21 7.41 43.04 3.02
66 67 2.096819 CGCCGTACGTTTACCTTACCTA 59.903 50.000 15.21 0.00 36.87 3.08
67 68 1.135402 CGCCGTACGTTTACCTTACCT 60.135 52.381 15.21 0.00 36.87 3.08
68 69 1.268265 CGCCGTACGTTTACCTTACC 58.732 55.000 15.21 0.00 36.87 2.85
79 80 3.713615 CTGGACGAGACGCCGTACG 62.714 68.421 8.69 8.69 45.84 3.67
80 81 2.099831 CTGGACGAGACGCCGTAC 59.900 66.667 0.00 1.46 43.49 3.67
81 82 3.807538 GCTGGACGAGACGCCGTA 61.808 66.667 0.00 0.00 43.49 4.02
83 84 4.838486 GAGCTGGACGAGACGCCG 62.838 72.222 0.00 0.00 0.00 6.46
84 85 4.500116 GGAGCTGGACGAGACGCC 62.500 72.222 0.00 0.00 0.00 5.68
85 86 3.404141 GAGGAGCTGGACGAGACGC 62.404 68.421 0.00 0.00 0.00 5.19
86 87 1.309499 AAGAGGAGCTGGACGAGACG 61.309 60.000 0.00 0.00 0.00 4.18
87 88 0.454196 GAAGAGGAGCTGGACGAGAC 59.546 60.000 0.00 0.00 0.00 3.36
139 140 2.122321 CGGAGTCGCGCTTTATACG 58.878 57.895 5.56 0.00 0.00 3.06
244 266 1.144936 CAGAATCCCTGGACGAGGC 59.855 63.158 0.00 0.00 41.19 4.70
254 276 2.514824 GAGGCGCACCAGAATCCC 60.515 66.667 10.83 0.00 39.06 3.85
359 381 1.711060 GAGGAGAGGAGACGAGTGCG 61.711 65.000 0.00 0.00 44.79 5.34
427 497 3.198068 CAAGGTGGTATCATCGTTGAGG 58.802 50.000 2.21 0.00 34.73 3.86
430 500 1.327460 CGCAAGGTGGTATCATCGTTG 59.673 52.381 6.63 6.63 0.00 4.10
464 534 2.414957 GGAACGAAGGGGCAAATTAACG 60.415 50.000 0.00 0.00 0.00 3.18
481 553 1.228769 GTTGGGGGTGGAAGGGAAC 60.229 63.158 0.00 0.00 0.00 3.62
482 554 2.475172 GGTTGGGGGTGGAAGGGAA 61.475 63.158 0.00 0.00 0.00 3.97
483 555 2.861974 GGTTGGGGGTGGAAGGGA 60.862 66.667 0.00 0.00 0.00 4.20
484 556 3.189646 TGGTTGGGGGTGGAAGGG 61.190 66.667 0.00 0.00 0.00 3.95
601 682 1.592543 CACAAACTTTGGCGCCTTTTC 59.407 47.619 29.70 0.00 34.12 2.29
691 1054 2.575993 CTCCACTCCACGGCTCAG 59.424 66.667 0.00 0.00 0.00 3.35
692 1055 2.997315 CCTCCACTCCACGGCTCA 60.997 66.667 0.00 0.00 0.00 4.26
693 1056 4.459089 GCCTCCACTCCACGGCTC 62.459 72.222 0.00 0.00 39.42 4.70
697 1060 4.742201 CACGGCCTCCACTCCACG 62.742 72.222 0.00 0.00 0.00 4.94
698 1061 3.591254 GACACGGCCTCCACTCCAC 62.591 68.421 0.00 0.00 0.00 4.02
699 1062 3.311110 GACACGGCCTCCACTCCA 61.311 66.667 0.00 0.00 0.00 3.86
700 1063 2.997897 AGACACGGCCTCCACTCC 60.998 66.667 0.00 0.00 0.00 3.85
701 1064 2.262915 CAGACACGGCCTCCACTC 59.737 66.667 0.00 0.00 0.00 3.51
702 1065 2.524394 ACAGACACGGCCTCCACT 60.524 61.111 0.00 0.00 0.00 4.00
790 1161 2.930826 AATCAAGAACTCCCACACGT 57.069 45.000 0.00 0.00 0.00 4.49
791 1162 3.926616 ACTAATCAAGAACTCCCACACG 58.073 45.455 0.00 0.00 0.00 4.49
795 1166 5.551233 CTGTCAACTAATCAAGAACTCCCA 58.449 41.667 0.00 0.00 0.00 4.37
797 1168 5.241662 AGCTGTCAACTAATCAAGAACTCC 58.758 41.667 0.00 0.00 0.00 3.85
798 1169 6.597614 CAAGCTGTCAACTAATCAAGAACTC 58.402 40.000 0.00 0.00 0.00 3.01
799 1170 5.049129 GCAAGCTGTCAACTAATCAAGAACT 60.049 40.000 0.00 0.00 0.00 3.01
800 1171 5.149977 GCAAGCTGTCAACTAATCAAGAAC 58.850 41.667 0.00 0.00 0.00 3.01
801 1172 4.821260 TGCAAGCTGTCAACTAATCAAGAA 59.179 37.500 0.00 0.00 0.00 2.52
802 1173 4.388485 TGCAAGCTGTCAACTAATCAAGA 58.612 39.130 0.00 0.00 0.00 3.02
803 1174 4.754372 TGCAAGCTGTCAACTAATCAAG 57.246 40.909 0.00 0.00 0.00 3.02
931 1359 2.028130 ACGACTCAGGAGCTAGAATGG 58.972 52.381 0.00 0.00 0.00 3.16
940 1368 1.331138 GGATCACGTACGACTCAGGAG 59.669 57.143 24.41 0.00 0.00 3.69
944 1372 0.450583 GCAGGATCACGTACGACTCA 59.549 55.000 24.41 2.32 0.00 3.41
1463 1908 2.068519 TCAGTAACATCAGCAGCAACG 58.931 47.619 0.00 0.00 0.00 4.10
1468 1913 6.018913 GTCATTCTGATCAGTAACATCAGCAG 60.019 42.308 21.92 0.00 44.83 4.24
1498 1943 5.300792 TGAACCAGATTCAGGTAAAAACACC 59.699 40.000 0.61 0.00 42.62 4.16
1513 2741 9.918630 CAACAAGAAGAAAATTATGAACCAGAT 57.081 29.630 0.00 0.00 0.00 2.90
1675 3142 5.099042 ACTTACTCATGCCGGTTTATTCT 57.901 39.130 1.90 0.00 0.00 2.40
1676 3143 5.051240 CGTACTTACTCATGCCGGTTTATTC 60.051 44.000 1.90 0.00 0.00 1.75
1715 3278 2.698797 TGACGGAAAGTTTCAGGAGACT 59.301 45.455 18.17 0.00 46.44 3.24
1716 3279 2.801111 GTGACGGAAAGTTTCAGGAGAC 59.199 50.000 18.17 8.81 0.00 3.36
1725 3288 1.849097 GACGACAGTGACGGAAAGTT 58.151 50.000 18.67 0.00 34.93 2.66
1727 3290 0.317603 ACGACGACAGTGACGGAAAG 60.318 55.000 18.67 9.21 34.93 2.62
1733 3297 0.660595 CCTGACACGACGACAGTGAC 60.661 60.000 0.00 9.77 41.83 3.67
1760 3332 4.556233 TCACAAGTCTATGAACAGGAACG 58.444 43.478 0.00 0.00 0.00 3.95
1810 3382 4.756084 AGGAATATAGCGAGCAAATTGC 57.244 40.909 10.41 10.41 45.46 3.56
1820 3392 6.480320 GGGTTGCATAATCTAGGAATATAGCG 59.520 42.308 0.00 0.00 0.00 4.26
1822 3394 6.986817 CCGGGTTGCATAATCTAGGAATATAG 59.013 42.308 0.00 0.00 0.00 1.31
1824 3396 5.339200 CCCGGGTTGCATAATCTAGGAATAT 60.339 44.000 14.18 0.00 0.00 1.28
1825 3397 4.019681 CCCGGGTTGCATAATCTAGGAATA 60.020 45.833 14.18 0.00 0.00 1.75
1827 3399 2.105821 CCCGGGTTGCATAATCTAGGAA 59.894 50.000 14.18 0.00 0.00 3.36
1828 3400 1.697432 CCCGGGTTGCATAATCTAGGA 59.303 52.381 14.18 0.00 0.00 2.94
1829 3401 1.420138 ACCCGGGTTGCATAATCTAGG 59.580 52.381 24.16 0.00 0.00 3.02
1830 3402 2.930826 ACCCGGGTTGCATAATCTAG 57.069 50.000 24.16 0.00 0.00 2.43
1832 3404 2.775384 TCTTACCCGGGTTGCATAATCT 59.225 45.455 35.42 4.46 0.00 2.40
1846 3418 4.765813 TTAGTGTAGCCCATTCTTACCC 57.234 45.455 0.00 0.00 0.00 3.69
1847 3419 8.258708 CCTATATTAGTGTAGCCCATTCTTACC 58.741 40.741 0.00 0.00 0.00 2.85
1848 3420 9.032624 TCCTATATTAGTGTAGCCCATTCTTAC 57.967 37.037 0.00 0.00 0.00 2.34
1887 3459 5.122554 TGCACTTTGACGTTTAACAGAGAAA 59.877 36.000 0.00 0.00 0.00 2.52
1971 3680 5.362717 TCCATCGTCACCTTGTATATGAAGT 59.637 40.000 0.00 0.00 0.00 3.01
1979 3688 5.739070 GCAGAATATCCATCGTCACCTTGTA 60.739 44.000 0.00 0.00 0.00 2.41
2055 3820 8.567285 TTCCTAAGAATCTTAGCCTGAAAAAG 57.433 34.615 21.35 7.44 0.00 2.27
2056 3821 8.383175 TCTTCCTAAGAATCTTAGCCTGAAAAA 58.617 33.333 21.35 9.83 33.83 1.94
2215 3980 0.250901 AAGAAGTGCGAGCCCACATT 60.251 50.000 0.00 0.00 38.18 2.71
2327 4109 3.444034 TGGTCTCCACTGAAGTTAGATCG 59.556 47.826 0.00 0.00 0.00 3.69
2331 4113 6.051717 CCATATTGGTCTCCACTGAAGTTAG 58.948 44.000 0.00 0.00 30.78 2.34
2365 4151 6.757897 TGTTCAAACTTAATAGATGGGCTG 57.242 37.500 0.00 0.00 0.00 4.85
2368 4154 8.279970 TGACATGTTCAAACTTAATAGATGGG 57.720 34.615 0.00 0.00 0.00 4.00
2463 4304 2.548057 CACAGTTTGTCAGGCGTTATGT 59.452 45.455 0.00 0.00 0.00 2.29
2575 4418 9.155975 CTTGACAATACTACTCAGCAGTAAAAT 57.844 33.333 0.00 0.00 34.53 1.82
2578 4421 6.071334 AGCTTGACAATACTACTCAGCAGTAA 60.071 38.462 0.00 0.00 34.53 2.24
2579 4422 5.419155 AGCTTGACAATACTACTCAGCAGTA 59.581 40.000 0.00 0.00 33.62 2.74
2849 4810 5.049129 GTGACAGAAGTTCAAAGGAATCCAG 60.049 44.000 5.50 0.00 35.05 3.86
2893 4855 0.957888 CACACACACACACACCCACA 60.958 55.000 0.00 0.00 0.00 4.17
2894 4856 1.653094 CCACACACACACACACCCAC 61.653 60.000 0.00 0.00 0.00 4.61
2895 4857 1.377856 CCACACACACACACACCCA 60.378 57.895 0.00 0.00 0.00 4.51
2896 4858 1.078072 TCCACACACACACACACCC 60.078 57.895 0.00 0.00 0.00 4.61
2897 4859 0.107897 TCTCCACACACACACACACC 60.108 55.000 0.00 0.00 0.00 4.16
2915 4885 5.368256 AACAGAGCAACAAATCAGTGATC 57.632 39.130 5.98 0.00 0.00 2.92
3053 5035 5.368989 GCCATAAACAAGCTGGATACTACT 58.631 41.667 0.00 0.00 37.61 2.57
3054 5036 4.515567 GGCCATAAACAAGCTGGATACTAC 59.484 45.833 0.00 0.00 37.61 2.73
3055 5037 4.714632 GGCCATAAACAAGCTGGATACTA 58.285 43.478 0.00 0.00 37.61 1.82
3097 5110 9.991906 TTATTCTGCAAAGTTGTTACTACTACT 57.008 29.630 0.00 0.00 41.18 2.57
3125 5138 1.102978 ATCGGCCCAAATAGCAACAC 58.897 50.000 0.00 0.00 0.00 3.32
3237 5250 3.923017 TTTGCTGGAAAAAGCTAGAGC 57.077 42.857 0.00 0.00 43.90 4.09
3243 5256 4.869861 TCTTCTGTTTTTGCTGGAAAAAGC 59.130 37.500 18.23 13.66 42.84 3.51
3258 5271 5.815233 TGAGGATCACTTCTTCTTCTGTT 57.185 39.130 0.00 0.00 42.56 3.16
3319 5335 0.244450 CAGACGCCCGGTACAAAGTA 59.756 55.000 0.00 0.00 0.00 2.24
3357 5373 6.420008 CAGGTACAGTCAACAAACAGTACTAC 59.580 42.308 0.00 0.00 40.21 2.73
3368 5384 0.107831 GGGCACAGGTACAGTCAACA 59.892 55.000 0.00 0.00 0.00 3.33
3369 5385 0.605589 GGGGCACAGGTACAGTCAAC 60.606 60.000 0.00 0.00 0.00 3.18
3370 5386 0.766674 AGGGGCACAGGTACAGTCAA 60.767 55.000 0.00 0.00 0.00 3.18
3371 5387 1.152118 AGGGGCACAGGTACAGTCA 60.152 57.895 0.00 0.00 0.00 3.41
3378 5394 4.954118 TGGACGAGGGGCACAGGT 62.954 66.667 0.00 0.00 0.00 4.00
3384 5400 4.208686 CGTAGCTGGACGAGGGGC 62.209 72.222 2.81 0.00 45.82 5.80
3406 5426 0.382151 CAAAACGTACGGTGCGACAC 60.382 55.000 24.83 0.00 0.00 3.67
3410 5430 0.179268 GCTACAAAACGTACGGTGCG 60.179 55.000 21.06 16.97 0.00 5.34
3460 5480 1.754234 GGCCTAAGGGTGGTGCATG 60.754 63.158 0.00 0.00 34.45 4.06
3468 5488 1.456919 ACCAAAGAAGGCCTAAGGGT 58.543 50.000 5.16 7.22 34.45 4.34
3471 5491 4.884164 CCTATGAACCAAAGAAGGCCTAAG 59.116 45.833 5.16 0.00 0.00 2.18
3474 5494 2.919602 TCCTATGAACCAAAGAAGGCCT 59.080 45.455 0.00 0.00 0.00 5.19
3475 5495 3.366052 TCCTATGAACCAAAGAAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
3476 5496 5.760743 GTCTATCCTATGAACCAAAGAAGGC 59.239 44.000 0.00 0.00 0.00 4.35
3477 5497 6.889198 TGTCTATCCTATGAACCAAAGAAGG 58.111 40.000 0.00 0.00 0.00 3.46
3478 5498 8.970859 AATGTCTATCCTATGAACCAAAGAAG 57.029 34.615 0.00 0.00 0.00 2.85
3479 5499 9.753674 AAAATGTCTATCCTATGAACCAAAGAA 57.246 29.630 0.00 0.00 0.00 2.52
3513 5533 9.355215 GTCATCTCACTTTCTACGATTTTTCTA 57.645 33.333 0.00 0.00 0.00 2.10
3514 5534 7.872993 TGTCATCTCACTTTCTACGATTTTTCT 59.127 33.333 0.00 0.00 0.00 2.52
3515 5535 8.018677 TGTCATCTCACTTTCTACGATTTTTC 57.981 34.615 0.00 0.00 0.00 2.29
3516 5536 7.962964 TGTCATCTCACTTTCTACGATTTTT 57.037 32.000 0.00 0.00 0.00 1.94
3517 5537 7.413438 GCATGTCATCTCACTTTCTACGATTTT 60.413 37.037 0.00 0.00 0.00 1.82
3518 5538 6.036517 GCATGTCATCTCACTTTCTACGATTT 59.963 38.462 0.00 0.00 0.00 2.17
3519 5539 5.521735 GCATGTCATCTCACTTTCTACGATT 59.478 40.000 0.00 0.00 0.00 3.34
3520 5540 5.046529 GCATGTCATCTCACTTTCTACGAT 58.953 41.667 0.00 0.00 0.00 3.73
3521 5541 4.082245 TGCATGTCATCTCACTTTCTACGA 60.082 41.667 0.00 0.00 0.00 3.43
3522 5542 4.176271 TGCATGTCATCTCACTTTCTACG 58.824 43.478 0.00 0.00 0.00 3.51
3523 5543 6.284475 GATGCATGTCATCTCACTTTCTAC 57.716 41.667 2.46 0.00 46.29 2.59
3535 5555 4.533815 ACAGGAATTGAGATGCATGTCAT 58.466 39.130 25.41 13.07 29.98 3.06
3536 5556 3.959293 ACAGGAATTGAGATGCATGTCA 58.041 40.909 21.70 21.70 29.98 3.58
3537 5557 5.363101 TCTACAGGAATTGAGATGCATGTC 58.637 41.667 16.63 16.63 37.10 3.06
3538 5558 5.363562 TCTACAGGAATTGAGATGCATGT 57.636 39.130 2.46 0.00 39.16 3.21
3539 5559 4.755629 CCTCTACAGGAATTGAGATGCATG 59.244 45.833 2.46 0.00 43.65 4.06
3540 5560 4.657504 TCCTCTACAGGAATTGAGATGCAT 59.342 41.667 0.00 0.00 46.84 3.96
3541 5561 4.033009 TCCTCTACAGGAATTGAGATGCA 58.967 43.478 0.00 0.00 46.84 3.96
3542 5562 4.679373 TCCTCTACAGGAATTGAGATGC 57.321 45.455 0.00 0.00 46.84 3.91
3553 5573 7.786030 TCAAATAACATCTCTTCCTCTACAGG 58.214 38.462 0.00 0.00 42.01 4.00
3554 5574 9.258826 CATCAAATAACATCTCTTCCTCTACAG 57.741 37.037 0.00 0.00 0.00 2.74
3555 5575 7.712639 GCATCAAATAACATCTCTTCCTCTACA 59.287 37.037 0.00 0.00 0.00 2.74
3556 5576 7.712639 TGCATCAAATAACATCTCTTCCTCTAC 59.287 37.037 0.00 0.00 0.00 2.59
3557 5577 7.795047 TGCATCAAATAACATCTCTTCCTCTA 58.205 34.615 0.00 0.00 0.00 2.43
3558 5578 6.656902 TGCATCAAATAACATCTCTTCCTCT 58.343 36.000 0.00 0.00 0.00 3.69
3559 5579 6.932356 TGCATCAAATAACATCTCTTCCTC 57.068 37.500 0.00 0.00 0.00 3.71
3560 5580 7.664731 CCTATGCATCAAATAACATCTCTTCCT 59.335 37.037 0.19 0.00 0.00 3.36
3561 5581 7.663081 TCCTATGCATCAAATAACATCTCTTCC 59.337 37.037 0.19 0.00 0.00 3.46
3562 5582 8.613060 TCCTATGCATCAAATAACATCTCTTC 57.387 34.615 0.19 0.00 0.00 2.87
3564 5584 9.887629 CTATCCTATGCATCAAATAACATCTCT 57.112 33.333 0.19 0.00 0.00 3.10
3565 5585 9.107177 CCTATCCTATGCATCAAATAACATCTC 57.893 37.037 0.19 0.00 0.00 2.75
3566 5586 8.829746 TCCTATCCTATGCATCAAATAACATCT 58.170 33.333 0.19 0.00 0.00 2.90
3567 5587 9.453572 TTCCTATCCTATGCATCAAATAACATC 57.546 33.333 0.19 0.00 0.00 3.06
3568 5588 9.986157 ATTCCTATCCTATGCATCAAATAACAT 57.014 29.630 0.19 0.00 0.00 2.71
3569 5589 9.812347 AATTCCTATCCTATGCATCAAATAACA 57.188 29.630 0.19 0.00 0.00 2.41
3574 5594 9.425248 AGAAAAATTCCTATCCTATGCATCAAA 57.575 29.630 0.19 0.00 0.00 2.69
3587 5607 9.785982 GCCTAGACTCAATAGAAAAATTCCTAT 57.214 33.333 0.00 0.00 0.00 2.57
3588 5608 8.993424 AGCCTAGACTCAATAGAAAAATTCCTA 58.007 33.333 0.00 0.00 0.00 2.94
3589 5609 7.866870 AGCCTAGACTCAATAGAAAAATTCCT 58.133 34.615 0.00 0.00 0.00 3.36
3590 5610 9.614792 TTAGCCTAGACTCAATAGAAAAATTCC 57.385 33.333 0.00 0.00 0.00 3.01
3594 5614 9.959721 AACATTAGCCTAGACTCAATAGAAAAA 57.040 29.630 0.00 0.00 0.00 1.94
3595 5615 9.959721 AAACATTAGCCTAGACTCAATAGAAAA 57.040 29.630 0.00 0.00 0.00 2.29
3596 5616 9.959721 AAAACATTAGCCTAGACTCAATAGAAA 57.040 29.630 0.00 0.00 0.00 2.52
3597 5617 9.959721 AAAAACATTAGCCTAGACTCAATAGAA 57.040 29.630 0.00 0.00 0.00 2.10
3598 5618 9.601217 GAAAAACATTAGCCTAGACTCAATAGA 57.399 33.333 0.00 0.00 0.00 1.98
3599 5619 9.606631 AGAAAAACATTAGCCTAGACTCAATAG 57.393 33.333 0.00 0.00 0.00 1.73
3600 5620 9.601217 GAGAAAAACATTAGCCTAGACTCAATA 57.399 33.333 0.00 0.00 0.00 1.90
3601 5621 7.554476 GGAGAAAAACATTAGCCTAGACTCAAT 59.446 37.037 0.00 0.00 0.00 2.57
3602 5622 6.879458 GGAGAAAAACATTAGCCTAGACTCAA 59.121 38.462 0.00 0.00 0.00 3.02
3603 5623 6.213600 AGGAGAAAAACATTAGCCTAGACTCA 59.786 38.462 0.00 0.00 0.00 3.41
3604 5624 6.645306 AGGAGAAAAACATTAGCCTAGACTC 58.355 40.000 0.00 0.00 0.00 3.36
3605 5625 6.352308 GGAGGAGAAAAACATTAGCCTAGACT 60.352 42.308 0.00 0.00 0.00 3.24
3606 5626 5.818336 GGAGGAGAAAAACATTAGCCTAGAC 59.182 44.000 0.00 0.00 0.00 2.59
3607 5627 5.487488 TGGAGGAGAAAAACATTAGCCTAGA 59.513 40.000 0.00 0.00 0.00 2.43
3608 5628 5.745227 TGGAGGAGAAAAACATTAGCCTAG 58.255 41.667 0.00 0.00 0.00 3.02
3609 5629 5.772393 TGGAGGAGAAAAACATTAGCCTA 57.228 39.130 0.00 0.00 0.00 3.93
3610 5630 4.657814 TGGAGGAGAAAAACATTAGCCT 57.342 40.909 0.00 0.00 0.00 4.58
3611 5631 5.722021 TTTGGAGGAGAAAAACATTAGCC 57.278 39.130 0.00 0.00 0.00 3.93
3612 5632 7.154656 ACATTTTGGAGGAGAAAAACATTAGC 58.845 34.615 0.00 0.00 0.00 3.09
3615 5635 9.546428 CTTTACATTTTGGAGGAGAAAAACATT 57.454 29.630 0.00 0.00 0.00 2.71
3616 5636 8.150296 CCTTTACATTTTGGAGGAGAAAAACAT 58.850 33.333 0.00 0.00 0.00 2.71
3617 5637 7.343316 TCCTTTACATTTTGGAGGAGAAAAACA 59.657 33.333 0.00 0.00 32.91 2.83
3618 5638 7.722363 TCCTTTACATTTTGGAGGAGAAAAAC 58.278 34.615 0.00 0.00 32.91 2.43
3619 5639 7.906199 TCCTTTACATTTTGGAGGAGAAAAA 57.094 32.000 0.00 0.00 32.91 1.94
3620 5640 8.367156 CAATCCTTTACATTTTGGAGGAGAAAA 58.633 33.333 0.00 0.00 39.68 2.29
3621 5641 7.728083 TCAATCCTTTACATTTTGGAGGAGAAA 59.272 33.333 0.00 0.00 39.68 2.52
3622 5642 7.237982 TCAATCCTTTACATTTTGGAGGAGAA 58.762 34.615 0.00 0.00 39.68 2.87
3623 5643 6.789268 TCAATCCTTTACATTTTGGAGGAGA 58.211 36.000 0.00 0.00 39.68 3.71
3624 5644 7.651027 ATCAATCCTTTACATTTTGGAGGAG 57.349 36.000 0.00 0.00 39.68 3.69
3625 5645 7.124147 GGAATCAATCCTTTACATTTTGGAGGA 59.876 37.037 0.00 0.00 45.56 3.71
3626 5646 7.267857 GGAATCAATCCTTTACATTTTGGAGG 58.732 38.462 0.00 0.00 45.56 4.30
3668 5688 9.996554 CCCTTTAGTTTGTAAGAATGGATTTTT 57.003 29.630 0.00 0.00 0.00 1.94
3669 5689 8.094548 GCCCTTTAGTTTGTAAGAATGGATTTT 58.905 33.333 0.00 0.00 0.00 1.82
3670 5690 7.454694 AGCCCTTTAGTTTGTAAGAATGGATTT 59.545 33.333 0.00 0.00 0.00 2.17
3671 5691 6.954102 AGCCCTTTAGTTTGTAAGAATGGATT 59.046 34.615 0.00 0.00 0.00 3.01
3672 5692 6.494059 AGCCCTTTAGTTTGTAAGAATGGAT 58.506 36.000 0.00 0.00 0.00 3.41
3673 5693 5.887754 AGCCCTTTAGTTTGTAAGAATGGA 58.112 37.500 0.00 0.00 0.00 3.41
3674 5694 6.590234 AAGCCCTTTAGTTTGTAAGAATGG 57.410 37.500 0.00 0.00 0.00 3.16
3675 5695 9.974980 TTTAAAGCCCTTTAGTTTGTAAGAATG 57.025 29.630 1.29 0.00 36.52 2.67
3677 5697 9.411189 TCTTTAAAGCCCTTTAGTTTGTAAGAA 57.589 29.630 10.51 0.00 36.52 2.52
3678 5698 8.983702 TCTTTAAAGCCCTTTAGTTTGTAAGA 57.016 30.769 10.51 4.25 36.52 2.10
3682 5702 9.899661 AAATTTCTTTAAAGCCCTTTAGTTTGT 57.100 25.926 10.51 0.00 36.52 2.83
3686 5706 9.555727 GGAAAAATTTCTTTAAAGCCCTTTAGT 57.444 29.630 10.51 2.47 35.81 2.24
3687 5707 9.778741 AGGAAAAATTTCTTTAAAGCCCTTTAG 57.221 29.630 10.51 0.00 35.81 1.85
3689 5709 9.474313 AAAGGAAAAATTTCTTTAAAGCCCTTT 57.526 25.926 10.51 13.14 35.74 3.11
3690 5710 8.902806 CAAAGGAAAAATTTCTTTAAAGCCCTT 58.097 29.630 10.51 8.92 35.74 3.95
3691 5711 7.013274 GCAAAGGAAAAATTTCTTTAAAGCCCT 59.987 33.333 10.51 4.05 35.74 5.19
3692 5712 7.138736 GCAAAGGAAAAATTTCTTTAAAGCCC 58.861 34.615 10.51 2.08 35.74 5.19
3693 5713 6.850823 CGCAAAGGAAAAATTTCTTTAAAGCC 59.149 34.615 10.51 3.50 35.74 4.35
3694 5714 7.626446 TCGCAAAGGAAAAATTTCTTTAAAGC 58.374 30.769 10.51 7.71 35.74 3.51
3697 5717 8.769891 GGATTCGCAAAGGAAAAATTTCTTTAA 58.230 29.630 4.02 0.00 35.74 1.52
3698 5718 8.147704 AGGATTCGCAAAGGAAAAATTTCTTTA 58.852 29.630 4.02 0.00 35.74 1.85
3699 5719 6.992123 AGGATTCGCAAAGGAAAAATTTCTTT 59.008 30.769 5.91 2.04 37.99 2.52
3700 5720 6.524734 AGGATTCGCAAAGGAAAAATTTCTT 58.475 32.000 5.91 0.00 37.35 2.52
3701 5721 6.101650 AGGATTCGCAAAGGAAAAATTTCT 57.898 33.333 5.91 0.00 37.35 2.52
3702 5722 7.222805 GGATAGGATTCGCAAAGGAAAAATTTC 59.777 37.037 0.00 0.00 36.46 2.17
3703 5723 7.041721 GGATAGGATTCGCAAAGGAAAAATTT 58.958 34.615 0.00 0.00 0.00 1.82
3704 5724 6.381133 AGGATAGGATTCGCAAAGGAAAAATT 59.619 34.615 0.00 0.00 0.00 1.82
3705 5725 5.893824 AGGATAGGATTCGCAAAGGAAAAAT 59.106 36.000 0.00 0.00 0.00 1.82
3706 5726 5.261216 AGGATAGGATTCGCAAAGGAAAAA 58.739 37.500 0.00 0.00 0.00 1.94
3707 5727 4.855340 AGGATAGGATTCGCAAAGGAAAA 58.145 39.130 0.00 0.00 0.00 2.29
3708 5728 4.503714 AGGATAGGATTCGCAAAGGAAA 57.496 40.909 0.00 0.00 0.00 3.13
3709 5729 5.825593 ATAGGATAGGATTCGCAAAGGAA 57.174 39.130 0.00 0.00 0.00 3.36
3710 5730 6.253758 TCTATAGGATAGGATTCGCAAAGGA 58.746 40.000 0.00 0.00 0.00 3.36
3711 5731 6.531503 TCTATAGGATAGGATTCGCAAAGG 57.468 41.667 0.00 0.00 0.00 3.11
3712 5732 9.092876 GAATTCTATAGGATAGGATTCGCAAAG 57.907 37.037 10.40 0.00 31.95 2.77
3713 5733 8.041323 GGAATTCTATAGGATAGGATTCGCAAA 58.959 37.037 16.24 0.00 39.38 3.68
3714 5734 7.400339 AGGAATTCTATAGGATAGGATTCGCAA 59.600 37.037 16.24 0.00 39.38 4.85
3715 5735 6.897966 AGGAATTCTATAGGATAGGATTCGCA 59.102 38.462 16.24 0.00 39.38 5.10
3716 5736 7.354751 AGGAATTCTATAGGATAGGATTCGC 57.645 40.000 16.24 11.54 39.38 4.70
3737 5757 9.250246 CCTTTGGTTTGTAGGAATTTTATAGGA 57.750 33.333 0.00 0.00 0.00 2.94
3738 5758 9.250246 TCCTTTGGTTTGTAGGAATTTTATAGG 57.750 33.333 0.00 0.00 35.20 2.57
3740 5760 9.250246 CCTCCTTTGGTTTGTAGGAATTTTATA 57.750 33.333 0.00 0.00 37.61 0.98
3741 5761 7.310423 GCCTCCTTTGGTTTGTAGGAATTTTAT 60.310 37.037 0.00 0.00 37.61 1.40
3742 5762 6.014925 GCCTCCTTTGGTTTGTAGGAATTTTA 60.015 38.462 0.00 0.00 37.61 1.52
3743 5763 5.221641 GCCTCCTTTGGTTTGTAGGAATTTT 60.222 40.000 0.00 0.00 37.61 1.82
3744 5764 4.283467 GCCTCCTTTGGTTTGTAGGAATTT 59.717 41.667 0.00 0.00 37.61 1.82
3745 5765 3.832490 GCCTCCTTTGGTTTGTAGGAATT 59.168 43.478 0.00 0.00 37.61 2.17
3746 5766 3.431415 GCCTCCTTTGGTTTGTAGGAAT 58.569 45.455 0.00 0.00 37.61 3.01
3747 5767 2.490168 GGCCTCCTTTGGTTTGTAGGAA 60.490 50.000 0.00 0.00 37.61 3.36
3748 5768 1.074889 GGCCTCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 36.65 2.94
3749 5769 1.075536 AGGCCTCCTTTGGTTTGTAGG 59.924 52.381 0.00 0.00 0.00 3.18
3750 5770 2.162681 CAGGCCTCCTTTGGTTTGTAG 58.837 52.381 0.00 0.00 0.00 2.74
3751 5771 1.777878 TCAGGCCTCCTTTGGTTTGTA 59.222 47.619 0.00 0.00 0.00 2.41
3752 5772 0.555769 TCAGGCCTCCTTTGGTTTGT 59.444 50.000 0.00 0.00 0.00 2.83
3753 5773 1.928868 ATCAGGCCTCCTTTGGTTTG 58.071 50.000 0.00 0.00 0.00 2.93
3754 5774 2.250924 CAATCAGGCCTCCTTTGGTTT 58.749 47.619 0.00 0.00 0.00 3.27
3755 5775 1.550869 CCAATCAGGCCTCCTTTGGTT 60.551 52.381 21.93 5.80 36.98 3.67
3756 5776 0.040204 CCAATCAGGCCTCCTTTGGT 59.960 55.000 21.93 0.00 36.98 3.67
3757 5777 0.685458 CCCAATCAGGCCTCCTTTGG 60.685 60.000 22.77 22.77 39.79 3.28
3758 5778 0.685458 CCCCAATCAGGCCTCCTTTG 60.685 60.000 0.00 7.09 35.39 2.77
3759 5779 0.850883 TCCCCAATCAGGCCTCCTTT 60.851 55.000 0.00 0.00 35.39 3.11
3760 5780 1.230281 TCCCCAATCAGGCCTCCTT 60.230 57.895 0.00 0.00 35.39 3.36
3761 5781 2.003548 GTCCCCAATCAGGCCTCCT 61.004 63.158 0.00 0.00 35.39 3.69
3762 5782 2.597903 GTCCCCAATCAGGCCTCC 59.402 66.667 0.00 0.00 35.39 4.30
3763 5783 2.597903 GGTCCCCAATCAGGCCTC 59.402 66.667 0.00 0.00 35.39 4.70
3764 5784 3.411517 CGGTCCCCAATCAGGCCT 61.412 66.667 0.00 0.00 35.39 5.19
3765 5785 3.406595 CTCGGTCCCCAATCAGGCC 62.407 68.421 0.00 0.00 35.39 5.19
3766 5786 2.190578 CTCGGTCCCCAATCAGGC 59.809 66.667 0.00 0.00 35.39 4.85
3767 5787 1.271840 TTCCTCGGTCCCCAATCAGG 61.272 60.000 0.00 0.00 37.03 3.86
3768 5788 0.107654 GTTCCTCGGTCCCCAATCAG 60.108 60.000 0.00 0.00 0.00 2.90
3769 5789 1.559065 GGTTCCTCGGTCCCCAATCA 61.559 60.000 0.00 0.00 0.00 2.57
3770 5790 1.223763 GGTTCCTCGGTCCCCAATC 59.776 63.158 0.00 0.00 0.00 2.67
3771 5791 0.919289 ATGGTTCCTCGGTCCCCAAT 60.919 55.000 0.00 0.00 0.00 3.16
3772 5792 1.540367 ATGGTTCCTCGGTCCCCAA 60.540 57.895 0.00 0.00 0.00 4.12
3773 5793 2.124085 ATGGTTCCTCGGTCCCCA 59.876 61.111 0.00 0.00 0.00 4.96
3774 5794 1.993391 TCATGGTTCCTCGGTCCCC 60.993 63.158 0.00 0.00 0.00 4.81
3775 5795 1.221021 GTCATGGTTCCTCGGTCCC 59.779 63.158 0.00 0.00 0.00 4.46
3776 5796 1.221021 GGTCATGGTTCCTCGGTCC 59.779 63.158 0.00 0.00 0.00 4.46
3777 5797 0.613777 AAGGTCATGGTTCCTCGGTC 59.386 55.000 0.00 0.00 33.09 4.79
3778 5798 0.613777 GAAGGTCATGGTTCCTCGGT 59.386 55.000 0.00 0.00 33.09 4.69
3779 5799 0.107654 GGAAGGTCATGGTTCCTCGG 60.108 60.000 12.60 0.00 39.42 4.63
3780 5800 3.460648 GGAAGGTCATGGTTCCTCG 57.539 57.895 12.60 0.00 39.42 4.63
3783 5803 3.577389 CCAGGAAGGTCATGGTTCC 57.423 57.895 12.17 12.17 42.90 3.62
3788 5808 1.452651 ATGCGCCAGGAAGGTCATG 60.453 57.895 4.18 0.00 40.61 3.07
3789 5809 1.452651 CATGCGCCAGGAAGGTCAT 60.453 57.895 4.18 0.00 40.61 3.06
3790 5810 2.046023 CATGCGCCAGGAAGGTCA 60.046 61.111 4.18 0.00 40.61 4.02
3791 5811 3.512516 GCATGCGCCAGGAAGGTC 61.513 66.667 4.18 0.00 40.61 3.85
3792 5812 2.196997 TAAGCATGCGCCAGGAAGGT 62.197 55.000 13.01 0.00 40.61 3.50
3793 5813 0.820891 ATAAGCATGCGCCAGGAAGG 60.821 55.000 13.01 0.00 39.83 3.46
3794 5814 0.590195 GATAAGCATGCGCCAGGAAG 59.410 55.000 13.01 0.00 39.83 3.46
3795 5815 1.159713 CGATAAGCATGCGCCAGGAA 61.160 55.000 13.01 0.00 39.83 3.36
3796 5816 1.595109 CGATAAGCATGCGCCAGGA 60.595 57.895 13.01 0.00 39.83 3.86
3797 5817 1.439353 AACGATAAGCATGCGCCAGG 61.439 55.000 13.01 5.81 39.83 4.45
3798 5818 0.378257 AAACGATAAGCATGCGCCAG 59.622 50.000 13.01 6.85 39.83 4.85
3799 5819 0.376852 GAAACGATAAGCATGCGCCA 59.623 50.000 13.01 1.28 39.83 5.69
3800 5820 0.317020 GGAAACGATAAGCATGCGCC 60.317 55.000 13.01 1.86 39.83 6.53
3801 5821 3.148823 GGAAACGATAAGCATGCGC 57.851 52.632 13.01 0.00 38.99 6.09
3814 5834 4.153256 CCAATTTACGTACTTGCGGAAAC 58.847 43.478 0.00 0.00 45.80 2.78
3815 5835 3.365164 GCCAATTTACGTACTTGCGGAAA 60.365 43.478 10.28 0.00 46.81 3.13
3816 5836 2.160022 GCCAATTTACGTACTTGCGGAA 59.840 45.455 10.28 0.00 35.98 4.30
3817 5837 1.733360 GCCAATTTACGTACTTGCGGA 59.267 47.619 10.28 0.00 35.98 5.54
3818 5838 1.528198 CGCCAATTTACGTACTTGCGG 60.528 52.381 16.87 8.45 35.98 5.69
3819 5839 1.793113 CGCCAATTTACGTACTTGCG 58.207 50.000 10.28 12.29 37.94 4.85
3820 5840 1.530856 GCGCCAATTTACGTACTTGC 58.469 50.000 0.00 6.53 0.00 4.01
3821 5841 1.465387 TGGCGCCAATTTACGTACTTG 59.535 47.619 30.74 2.38 0.00 3.16
3822 5842 1.735571 CTGGCGCCAATTTACGTACTT 59.264 47.619 32.09 0.00 0.00 2.24
3823 5843 1.066716 TCTGGCGCCAATTTACGTACT 60.067 47.619 32.09 0.00 0.00 2.73
3824 5844 1.361793 TCTGGCGCCAATTTACGTAC 58.638 50.000 32.09 0.00 0.00 3.67
3825 5845 2.096220 TTCTGGCGCCAATTTACGTA 57.904 45.000 32.09 8.56 0.00 3.57
3826 5846 1.199097 CTTTCTGGCGCCAATTTACGT 59.801 47.619 32.09 0.00 0.00 3.57
3827 5847 1.466950 TCTTTCTGGCGCCAATTTACG 59.533 47.619 32.09 17.93 0.00 3.18
3828 5848 3.057526 AGTTCTTTCTGGCGCCAATTTAC 60.058 43.478 32.09 21.54 0.00 2.01
3829 5849 3.153919 AGTTCTTTCTGGCGCCAATTTA 58.846 40.909 32.09 13.50 0.00 1.40
3830 5850 1.963515 AGTTCTTTCTGGCGCCAATTT 59.036 42.857 32.09 7.28 0.00 1.82
3831 5851 1.541588 GAGTTCTTTCTGGCGCCAATT 59.458 47.619 32.09 11.33 0.00 2.32
3832 5852 1.168714 GAGTTCTTTCTGGCGCCAAT 58.831 50.000 32.09 5.24 0.00 3.16
3833 5853 0.108585 AGAGTTCTTTCTGGCGCCAA 59.891 50.000 32.09 18.51 0.00 4.52
3834 5854 0.973632 TAGAGTTCTTTCTGGCGCCA 59.026 50.000 30.59 30.59 0.00 5.69
3835 5855 1.066787 AGTAGAGTTCTTTCTGGCGCC 60.067 52.381 22.73 22.73 0.00 6.53
3836 5856 1.996191 CAGTAGAGTTCTTTCTGGCGC 59.004 52.381 0.00 0.00 0.00 6.53
3837 5857 2.989840 CACAGTAGAGTTCTTTCTGGCG 59.010 50.000 14.07 0.00 33.93 5.69
3838 5858 3.330267 CCACAGTAGAGTTCTTTCTGGC 58.670 50.000 14.07 0.00 33.93 4.85
3839 5859 3.866449 GCCCACAGTAGAGTTCTTTCTGG 60.866 52.174 14.07 4.50 33.93 3.86
3840 5860 3.330267 GCCCACAGTAGAGTTCTTTCTG 58.670 50.000 10.37 10.37 34.94 3.02
3841 5861 2.028930 CGCCCACAGTAGAGTTCTTTCT 60.029 50.000 0.00 0.00 0.00 2.52
3842 5862 2.288886 ACGCCCACAGTAGAGTTCTTTC 60.289 50.000 0.00 0.00 0.00 2.62
3843 5863 1.692519 ACGCCCACAGTAGAGTTCTTT 59.307 47.619 0.00 0.00 0.00 2.52
3844 5864 1.339097 ACGCCCACAGTAGAGTTCTT 58.661 50.000 0.00 0.00 0.00 2.52
3845 5865 1.817447 GTACGCCCACAGTAGAGTTCT 59.183 52.381 0.00 0.00 0.00 3.01
3846 5866 1.467035 CGTACGCCCACAGTAGAGTTC 60.467 57.143 0.52 0.00 0.00 3.01
3847 5867 0.524862 CGTACGCCCACAGTAGAGTT 59.475 55.000 0.52 0.00 0.00 3.01
3848 5868 1.310933 CCGTACGCCCACAGTAGAGT 61.311 60.000 10.49 0.00 0.00 3.24
3849 5869 1.432251 CCGTACGCCCACAGTAGAG 59.568 63.158 10.49 0.00 0.00 2.43
3850 5870 2.048023 CCCGTACGCCCACAGTAGA 61.048 63.158 10.49 0.00 0.00 2.59
3851 5871 2.493030 CCCGTACGCCCACAGTAG 59.507 66.667 10.49 0.00 0.00 2.57
3852 5872 3.069946 CCCCGTACGCCCACAGTA 61.070 66.667 10.49 0.00 0.00 2.74
3854 5874 4.752879 CACCCCGTACGCCCACAG 62.753 72.222 10.49 0.00 0.00 3.66
3894 5914 2.126888 AAAAATGGCGCGCTCGTG 60.127 55.556 32.29 0.00 38.14 4.35
3895 5915 2.126888 CAAAAATGGCGCGCTCGT 60.127 55.556 32.29 19.23 38.14 4.18
3896 5916 3.535491 GCAAAAATGGCGCGCTCG 61.535 61.111 32.29 12.25 39.07 5.03
3897 5917 2.430582 TGCAAAAATGGCGCGCTC 60.431 55.556 32.29 21.22 0.00 5.03
3898 5918 2.431260 CTGCAAAAATGGCGCGCT 60.431 55.556 32.29 9.55 0.00 5.92
3899 5919 4.138109 GCTGCAAAAATGGCGCGC 62.138 61.111 25.94 25.94 0.00 6.86
3900 5920 3.829975 CGCTGCAAAAATGGCGCG 61.830 61.111 0.00 0.00 43.36 6.86
3903 5923 2.088178 CCGACGCTGCAAAAATGGC 61.088 57.895 0.00 0.00 0.00 4.40
3904 5924 0.039617 TTCCGACGCTGCAAAAATGG 60.040 50.000 0.00 0.00 0.00 3.16
3905 5925 1.764851 TTTCCGACGCTGCAAAAATG 58.235 45.000 0.00 0.00 0.00 2.32
3906 5926 2.124122 GTTTTCCGACGCTGCAAAAAT 58.876 42.857 0.00 0.00 0.00 1.82
3907 5927 1.551145 GTTTTCCGACGCTGCAAAAA 58.449 45.000 0.00 0.00 0.00 1.94
3908 5928 0.248702 GGTTTTCCGACGCTGCAAAA 60.249 50.000 0.00 0.00 0.00 2.44
3909 5929 1.357334 GGTTTTCCGACGCTGCAAA 59.643 52.632 0.00 0.00 0.00 3.68
3910 5930 3.027292 GGTTTTCCGACGCTGCAA 58.973 55.556 0.00 0.00 0.00 4.08
3920 5940 2.671963 AGAAGCGGCCGGTTTTCC 60.672 61.111 39.66 27.81 35.84 3.13
3921 5941 2.868196 GAGAAGCGGCCGGTTTTC 59.132 61.111 39.66 37.16 35.84 2.29
3922 5942 3.047877 CGAGAAGCGGCCGGTTTT 61.048 61.111 39.66 35.04 35.84 2.43
3949 5969 4.072088 GTTCCGAGTGCAACCGCG 62.072 66.667 0.00 0.00 42.97 6.46
3950 5970 2.539338 TTGTTCCGAGTGCAACCGC 61.539 57.895 3.71 0.00 37.80 5.68
3951 5971 1.278637 GTTGTTCCGAGTGCAACCG 59.721 57.895 0.00 0.00 37.80 4.44
3953 5973 1.652563 GGGTTGTTCCGAGTGCAAC 59.347 57.895 0.00 0.00 41.02 4.17
3954 5974 1.527380 GGGGTTGTTCCGAGTGCAA 60.527 57.895 0.00 0.00 37.00 4.08
3955 5975 2.112297 GGGGTTGTTCCGAGTGCA 59.888 61.111 0.00 0.00 37.00 4.57
3956 5976 2.112297 TGGGGTTGTTCCGAGTGC 59.888 61.111 0.00 0.00 37.00 4.40
3957 5977 1.959226 CGTGGGGTTGTTCCGAGTG 60.959 63.158 0.00 0.00 37.00 3.51
3958 5978 2.373434 GACGTGGGGTTGTTCCGAGT 62.373 60.000 0.00 0.00 37.00 4.18
3959 5979 1.666872 GACGTGGGGTTGTTCCGAG 60.667 63.158 0.00 0.00 37.00 4.63
3960 5980 1.688269 AAGACGTGGGGTTGTTCCGA 61.688 55.000 0.00 0.00 37.00 4.55
3961 5981 1.227734 AAGACGTGGGGTTGTTCCG 60.228 57.895 0.00 0.00 37.00 4.30
3962 5982 0.179040 TCAAGACGTGGGGTTGTTCC 60.179 55.000 0.00 0.00 0.00 3.62
3963 5983 1.804748 GATCAAGACGTGGGGTTGTTC 59.195 52.381 0.00 0.00 0.00 3.18
3964 5984 1.142060 TGATCAAGACGTGGGGTTGTT 59.858 47.619 0.00 0.00 0.00 2.83
3965 5985 0.762418 TGATCAAGACGTGGGGTTGT 59.238 50.000 0.00 0.00 0.00 3.32
3966 5986 1.156736 GTGATCAAGACGTGGGGTTG 58.843 55.000 0.00 0.00 0.00 3.77
3967 5987 0.320421 CGTGATCAAGACGTGGGGTT 60.320 55.000 2.01 0.00 32.06 4.11
3968 5988 1.292223 CGTGATCAAGACGTGGGGT 59.708 57.895 2.01 0.00 32.06 4.95
3969 5989 2.100631 GCGTGATCAAGACGTGGGG 61.101 63.158 13.18 0.00 39.08 4.96
3970 5990 2.444624 CGCGTGATCAAGACGTGGG 61.445 63.158 13.18 0.00 42.27 4.61
3971 5991 3.072598 CGCGTGATCAAGACGTGG 58.927 61.111 13.18 0.00 42.27 4.94
3972 5992 3.071459 GCCGCGTGATCAAGACGTG 62.071 63.158 13.18 11.36 44.86 4.49
3973 5993 2.809601 GCCGCGTGATCAAGACGT 60.810 61.111 13.18 0.00 39.08 4.34
3974 5994 3.902063 CGCCGCGTGATCAAGACG 61.902 66.667 13.18 14.13 39.87 4.18
3975 5995 3.554692 CCGCCGCGTGATCAAGAC 61.555 66.667 13.18 3.20 0.00 3.01
3976 5996 4.812476 CCCGCCGCGTGATCAAGA 62.812 66.667 13.18 0.00 0.00 3.02
3990 6010 3.402681 ATCTCCTGGTGGCACCCG 61.403 66.667 32.61 26.23 37.50 5.28
3991 6011 2.273449 CATCTCCTGGTGGCACCC 59.727 66.667 32.61 15.90 37.50 4.61
3992 6012 2.273449 CCATCTCCTGGTGGCACC 59.727 66.667 29.75 29.75 40.49 5.01
4000 6020 0.249657 GCCGTTCTAGCCATCTCCTG 60.250 60.000 0.00 0.00 0.00 3.86
4001 6021 2.128729 GCCGTTCTAGCCATCTCCT 58.871 57.895 0.00 0.00 0.00 3.69
4002 6022 4.760757 GCCGTTCTAGCCATCTCC 57.239 61.111 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.