Multiple sequence alignment - TraesCS2D01G378000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G378000 chr2D 100.000 4459 0 0 1 4459 482383529 482379071 0.000000e+00 8235.0
1 TraesCS2D01G378000 chr2D 84.758 2972 397 29 699 3641 572257786 572254842 0.000000e+00 2928.0
2 TraesCS2D01G378000 chr2D 84.646 2729 356 33 958 3657 482351081 482348387 0.000000e+00 2660.0
3 TraesCS2D01G378000 chr2D 82.591 2740 408 46 933 3618 626595339 626592615 0.000000e+00 2353.0
4 TraesCS2D01G378000 chr2D 92.029 138 7 4 4325 4459 456960377 456960513 1.640000e-44 191.0
5 TraesCS2D01G378000 chr2A 93.984 3208 168 13 717 3909 624968216 624965019 0.000000e+00 4831.0
6 TraesCS2D01G378000 chr2A 84.735 2961 405 34 699 3641 711468432 711465501 0.000000e+00 2920.0
7 TraesCS2D01G378000 chr2A 84.676 2943 384 33 762 3666 624944251 624941338 0.000000e+00 2874.0
8 TraesCS2D01G378000 chr2A 93.206 471 27 4 1 467 624968904 624968435 0.000000e+00 688.0
9 TraesCS2D01G378000 chr2A 90.244 205 18 2 525 727 624968440 624968236 2.640000e-67 267.0
10 TraesCS2D01G378000 chr2B 94.573 3059 143 11 517 3559 566403925 566400874 0.000000e+00 4708.0
11 TraesCS2D01G378000 chr2B 85.289 2957 399 25 699 3641 687208037 687205103 0.000000e+00 3018.0
12 TraesCS2D01G378000 chr2B 86.458 1691 204 12 1974 3657 566391485 566389813 0.000000e+00 1831.0
13 TraesCS2D01G378000 chr2B 82.594 1195 185 15 762 1945 566392751 566391569 0.000000e+00 1033.0
14 TraesCS2D01G378000 chr2B 84.696 477 45 18 1 467 566404370 566403912 6.800000e-123 451.0
15 TraesCS2D01G378000 chr1D 74.624 930 201 18 985 1892 17627885 17628801 1.170000e-100 377.0
16 TraesCS2D01G378000 chr1D 98.305 118 2 0 4342 4459 355673079 355673196 1.630000e-49 207.0
17 TraesCS2D01G378000 chr7D 98.305 118 1 1 4342 4459 265164969 265164853 5.850000e-49 206.0
18 TraesCS2D01G378000 chr7D 95.349 129 6 0 4331 4459 388130998 388131126 5.850000e-49 206.0
19 TraesCS2D01G378000 chr7D 98.077 52 1 0 468 519 380422961 380423012 1.710000e-14 91.6
20 TraesCS2D01G378000 chr6D 96.721 122 3 1 4338 4459 147646483 147646603 7.560000e-48 202.0
21 TraesCS2D01G378000 chr3D 96.721 122 3 1 4338 4459 83859454 83859574 7.560000e-48 202.0
22 TraesCS2D01G378000 chr3D 92.143 140 7 4 4323 4459 5017292 5017430 1.270000e-45 195.0
23 TraesCS2D01G378000 chr5D 94.574 129 5 2 4332 4459 55830783 55830656 9.780000e-47 198.0
24 TraesCS2D01G378000 chr5A 93.130 131 8 1 4326 4456 259074181 259074310 1.640000e-44 191.0
25 TraesCS2D01G378000 chr6B 100.000 50 0 0 468 517 102567778 102567827 4.750000e-15 93.5
26 TraesCS2D01G378000 chr6B 93.220 59 3 1 468 525 450147238 450147296 7.950000e-13 86.1
27 TraesCS2D01G378000 chr5B 98.077 52 1 0 469 520 106404100 106404049 1.710000e-14 91.6
28 TraesCS2D01G378000 chr5B 96.296 54 2 0 468 521 109223372 109223319 6.140000e-14 89.8
29 TraesCS2D01G378000 chr5B 91.803 61 5 0 468 528 283030856 283030916 7.950000e-13 86.1
30 TraesCS2D01G378000 chr1A 98.039 51 1 0 467 517 142902993 142903043 6.140000e-14 89.8
31 TraesCS2D01G378000 chr7B 94.643 56 3 0 462 517 564745265 564745320 2.210000e-13 87.9
32 TraesCS2D01G378000 chr4D 96.296 54 1 1 468 521 216324075 216324127 2.210000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G378000 chr2D 482379071 482383529 4458 True 8235.000000 8235 100.0000 1 4459 1 chr2D.!!$R2 4458
1 TraesCS2D01G378000 chr2D 572254842 572257786 2944 True 2928.000000 2928 84.7580 699 3641 1 chr2D.!!$R3 2942
2 TraesCS2D01G378000 chr2D 482348387 482351081 2694 True 2660.000000 2660 84.6460 958 3657 1 chr2D.!!$R1 2699
3 TraesCS2D01G378000 chr2D 626592615 626595339 2724 True 2353.000000 2353 82.5910 933 3618 1 chr2D.!!$R4 2685
4 TraesCS2D01G378000 chr2A 711465501 711468432 2931 True 2920.000000 2920 84.7350 699 3641 1 chr2A.!!$R2 2942
5 TraesCS2D01G378000 chr2A 624941338 624944251 2913 True 2874.000000 2874 84.6760 762 3666 1 chr2A.!!$R1 2904
6 TraesCS2D01G378000 chr2A 624965019 624968904 3885 True 1928.666667 4831 92.4780 1 3909 3 chr2A.!!$R3 3908
7 TraesCS2D01G378000 chr2B 687205103 687208037 2934 True 3018.000000 3018 85.2890 699 3641 1 chr2B.!!$R1 2942
8 TraesCS2D01G378000 chr2B 566400874 566404370 3496 True 2579.500000 4708 89.6345 1 3559 2 chr2B.!!$R3 3558
9 TraesCS2D01G378000 chr2B 566389813 566392751 2938 True 1432.000000 1831 84.5260 762 3657 2 chr2B.!!$R2 2895
10 TraesCS2D01G378000 chr1D 17627885 17628801 916 False 377.000000 377 74.6240 985 1892 1 chr1D.!!$F1 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 186 0.389948 AGTTCTCGACGGACCATTGC 60.390 55.000 0.0 0.0 0.00 3.56 F
1023 1096 1.035139 AAGTGTTCTTGCAGCTTGGG 58.965 50.000 0.0 0.0 32.09 4.12 F
1479 1573 0.179156 CAACATGCCGCAATCTGTCC 60.179 55.000 0.0 0.0 0.00 4.02 F
3010 3214 1.623811 ACTAGCACCATCGGACAAAGT 59.376 47.619 0.0 0.0 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1372 1466 0.393077 ACCGTGAACCTGTTCTGGAG 59.607 55.0 20.95 8.0 40.14 3.86 R
2864 3068 0.321996 AGAAGTTGAGTCCTTCGGCC 59.678 55.0 0.00 0.0 42.48 6.13 R
3152 3356 0.968393 GCTTCTCAGACCCCTCGAGT 60.968 60.0 12.31 0.0 0.00 4.18 R
4282 4503 0.034477 CCAGGCCGGAACAGGTAAAT 60.034 55.0 5.05 0.0 36.56 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.152154 CCGTTGGGGAAATCTGTTAATTAAGT 59.848 38.462 0.00 0.00 38.47 2.24
29 30 7.309560 CCGTTGGGGAAATCTGTTAATTAAGTT 60.310 37.037 0.00 0.00 38.47 2.66
53 54 6.772605 TGATTCAGAGATGTTCTTTCTTGGA 58.227 36.000 0.00 0.00 32.41 3.53
118 119 7.604927 TGTCTGCTCCGTTTATTTTTATGTACT 59.395 33.333 0.00 0.00 0.00 2.73
185 186 0.389948 AGTTCTCGACGGACCATTGC 60.390 55.000 0.00 0.00 0.00 3.56
204 208 1.287730 CCGTCAAGAGCTGTCAGTGC 61.288 60.000 0.93 0.00 0.00 4.40
259 263 5.353394 TCAGAAACACAACTACAGAACCT 57.647 39.130 0.00 0.00 0.00 3.50
272 276 4.338379 ACAGAACCTAGCTCGAAAGTTT 57.662 40.909 0.00 0.00 0.00 2.66
293 297 3.134792 GGTGCTCTCGCCTCTCGA 61.135 66.667 0.00 0.00 46.29 4.04
364 373 6.879276 ATCTCTTCTATCCGACGAACATTA 57.121 37.500 0.00 0.00 0.00 1.90
365 374 6.301687 TCTCTTCTATCCGACGAACATTAG 57.698 41.667 0.00 0.00 0.00 1.73
366 375 5.238868 TCTCTTCTATCCGACGAACATTAGG 59.761 44.000 0.00 0.00 0.00 2.69
437 448 9.730420 GAAATGTCTTTTACAAGCTTTCAGTTA 57.270 29.630 0.00 0.00 42.70 2.24
449 460 7.542130 ACAAGCTTTCAGTTAGTTTTTCAGTTG 59.458 33.333 0.00 0.00 0.00 3.16
460 471 8.403236 GTTAGTTTTTCAGTTGTACATGAAGGT 58.597 33.333 10.84 2.62 36.81 3.50
461 472 7.404671 AGTTTTTCAGTTGTACATGAAGGTT 57.595 32.000 10.84 0.00 36.81 3.50
462 473 7.257722 AGTTTTTCAGTTGTACATGAAGGTTG 58.742 34.615 10.84 0.00 36.81 3.77
463 474 7.122055 AGTTTTTCAGTTGTACATGAAGGTTGA 59.878 33.333 10.84 0.00 36.81 3.18
464 475 7.397892 TTTTCAGTTGTACATGAAGGTTGAA 57.602 32.000 10.84 0.00 36.81 2.69
465 476 7.581213 TTTCAGTTGTACATGAAGGTTGAAT 57.419 32.000 10.84 0.00 36.81 2.57
466 477 6.558771 TCAGTTGTACATGAAGGTTGAATG 57.441 37.500 0.00 0.00 0.00 2.67
467 478 6.061441 TCAGTTGTACATGAAGGTTGAATGT 58.939 36.000 0.00 0.00 38.13 2.71
468 479 6.545666 TCAGTTGTACATGAAGGTTGAATGTT 59.454 34.615 0.00 0.00 36.08 2.71
469 480 6.857964 CAGTTGTACATGAAGGTTGAATGTTC 59.142 38.462 0.00 0.00 36.08 3.18
470 481 6.772716 AGTTGTACATGAAGGTTGAATGTTCT 59.227 34.615 0.00 0.00 36.08 3.01
471 482 7.285401 AGTTGTACATGAAGGTTGAATGTTCTT 59.715 33.333 0.00 0.00 36.08 2.52
472 483 7.202016 TGTACATGAAGGTTGAATGTTCTTC 57.798 36.000 0.00 0.00 36.08 2.87
473 484 6.998074 TGTACATGAAGGTTGAATGTTCTTCT 59.002 34.615 0.00 0.00 37.21 2.85
474 485 6.966534 ACATGAAGGTTGAATGTTCTTCTT 57.033 33.333 0.00 0.00 37.21 2.52
475 486 7.352079 ACATGAAGGTTGAATGTTCTTCTTT 57.648 32.000 0.00 0.00 37.21 2.52
476 487 8.463930 ACATGAAGGTTGAATGTTCTTCTTTA 57.536 30.769 0.00 0.00 37.21 1.85
477 488 8.912988 ACATGAAGGTTGAATGTTCTTCTTTAA 58.087 29.630 0.00 0.00 37.21 1.52
478 489 9.918630 CATGAAGGTTGAATGTTCTTCTTTAAT 57.081 29.630 0.00 0.00 37.21 1.40
510 521 4.926860 CACACTCGTGCATATTTGAGAA 57.073 40.909 0.00 0.00 36.06 2.87
511 522 5.281693 CACACTCGTGCATATTTGAGAAA 57.718 39.130 0.00 0.00 36.06 2.52
512 523 5.688823 CACACTCGTGCATATTTGAGAAAA 58.311 37.500 0.00 0.00 36.06 2.29
513 524 6.142139 CACACTCGTGCATATTTGAGAAAAA 58.858 36.000 0.00 0.00 36.06 1.94
567 579 1.474077 GTGCTGCCTATTTGTTCCCAG 59.526 52.381 0.00 0.00 0.00 4.45
570 582 3.245087 TGCTGCCTATTTGTTCCCAGTAA 60.245 43.478 0.00 0.00 0.00 2.24
578 590 7.255277 GCCTATTTGTTCCCAGTAATCTGAATC 60.255 40.741 0.00 0.00 43.76 2.52
691 704 8.079211 AGCAGAGTTAATCAGTCCATAAGTAA 57.921 34.615 0.00 0.00 0.00 2.24
759 802 3.402628 AGAAGCCACAACGTTCACTAT 57.597 42.857 0.00 0.00 0.00 2.12
940 1006 9.852481 CATTATTCATGCAACCGATTATTTTTG 57.148 29.630 0.00 0.00 0.00 2.44
993 1066 5.415701 GTCATGTTTTCTTATTCTCCAGCCA 59.584 40.000 0.00 0.00 0.00 4.75
1023 1096 1.035139 AAGTGTTCTTGCAGCTTGGG 58.965 50.000 0.00 0.00 32.09 4.12
1224 1318 1.531602 GGGTGCCTTTGAGGTGCTT 60.532 57.895 0.00 0.00 37.80 3.91
1339 1433 1.329599 GATATGCGGGGTTCAACGAAC 59.670 52.381 0.00 0.00 41.32 3.95
1479 1573 0.179156 CAACATGCCGCAATCTGTCC 60.179 55.000 0.00 0.00 0.00 4.02
1604 1698 4.285863 AGTGAAATTTGGGAGTTCAACCA 58.714 39.130 0.00 0.00 43.20 3.67
1632 1726 1.885049 ATGTGGTACTGATGGAGGCT 58.115 50.000 0.00 0.00 0.00 4.58
1946 2056 4.065088 ACTAACGCCCATAATACTGCATG 58.935 43.478 0.00 0.00 0.00 4.06
2032 2201 4.215185 TCTGCAGACGTTAATGAATGCAAA 59.785 37.500 22.58 13.51 42.52 3.68
2248 2432 9.317936 GTCATGACAATCACACATCTAATCTTA 57.682 33.333 21.07 0.00 0.00 2.10
2606 2807 5.303589 TGGAACGGTCTATAAAGGGATACTG 59.696 44.000 0.00 0.00 0.00 2.74
2839 3043 4.046462 GCATTGCAAATATCGTTCAGCAT 58.954 39.130 1.71 0.00 0.00 3.79
3002 3206 2.036475 AGCTTCCATACTAGCACCATCG 59.964 50.000 0.00 0.00 39.85 3.84
3010 3214 1.623811 ACTAGCACCATCGGACAAAGT 59.376 47.619 0.00 0.00 0.00 2.66
3299 3503 4.944317 GGACTTGCAGACCTAGCTAAAAAT 59.056 41.667 0.00 0.00 0.00 1.82
3545 3750 3.314913 TGCAAGGTGAGTAAACACATGTG 59.685 43.478 24.25 24.25 41.88 3.21
3670 3880 6.719370 TGTATTTTGAGGATTGCTTGTACCTT 59.281 34.615 0.00 0.00 32.53 3.50
3698 3908 7.180051 CCTAATAGGGAGTCTATCTCTTGCAAT 59.820 40.741 0.00 0.00 40.23 3.56
3700 3910 5.289083 AGGGAGTCTATCTCTTGCAATTC 57.711 43.478 0.00 0.00 33.72 2.17
3859 4080 7.003482 TGCATAACAATATATCTTTGAGGCCA 58.997 34.615 5.01 0.00 0.00 5.36
3961 4182 7.772332 AAAAATATCTATTGACTCGAACGCT 57.228 32.000 0.00 0.00 0.00 5.07
3962 4183 6.755461 AAATATCTATTGACTCGAACGCTG 57.245 37.500 0.00 0.00 0.00 5.18
3963 4184 1.909376 TCTATTGACTCGAACGCTGC 58.091 50.000 0.00 0.00 0.00 5.25
3964 4185 0.567968 CTATTGACTCGAACGCTGCG 59.432 55.000 21.91 21.91 0.00 5.18
3965 4186 0.800683 TATTGACTCGAACGCTGCGG 60.801 55.000 26.95 10.34 0.00 5.69
3966 4187 2.486636 ATTGACTCGAACGCTGCGGA 62.487 55.000 26.95 12.84 0.00 5.54
3967 4188 2.430244 GACTCGAACGCTGCGGAA 60.430 61.111 26.95 7.33 0.00 4.30
3968 4189 2.430921 ACTCGAACGCTGCGGAAG 60.431 61.111 26.95 18.10 0.00 3.46
3969 4190 3.181967 CTCGAACGCTGCGGAAGG 61.182 66.667 26.95 12.17 0.00 3.46
3979 4200 3.406559 GCGGAAGGCGATACAACC 58.593 61.111 0.00 0.00 0.00 3.77
3980 4201 1.448893 GCGGAAGGCGATACAACCA 60.449 57.895 0.00 0.00 0.00 3.67
3981 4202 0.814010 GCGGAAGGCGATACAACCAT 60.814 55.000 0.00 0.00 0.00 3.55
3982 4203 1.539496 GCGGAAGGCGATACAACCATA 60.539 52.381 0.00 0.00 0.00 2.74
3983 4204 2.828877 CGGAAGGCGATACAACCATAA 58.171 47.619 0.00 0.00 0.00 1.90
3984 4205 2.800544 CGGAAGGCGATACAACCATAAG 59.199 50.000 0.00 0.00 0.00 1.73
3985 4206 3.491964 CGGAAGGCGATACAACCATAAGA 60.492 47.826 0.00 0.00 0.00 2.10
3986 4207 4.448210 GGAAGGCGATACAACCATAAGAA 58.552 43.478 0.00 0.00 0.00 2.52
3987 4208 4.511826 GGAAGGCGATACAACCATAAGAAG 59.488 45.833 0.00 0.00 0.00 2.85
3988 4209 4.755266 AGGCGATACAACCATAAGAAGT 57.245 40.909 0.00 0.00 0.00 3.01
3989 4210 5.099042 AGGCGATACAACCATAAGAAGTT 57.901 39.130 0.00 0.00 0.00 2.66
3990 4211 5.116882 AGGCGATACAACCATAAGAAGTTC 58.883 41.667 0.00 0.00 0.00 3.01
3991 4212 4.873827 GGCGATACAACCATAAGAAGTTCA 59.126 41.667 5.50 0.00 0.00 3.18
3992 4213 5.527582 GGCGATACAACCATAAGAAGTTCAT 59.472 40.000 5.50 0.00 0.00 2.57
3993 4214 6.704493 GGCGATACAACCATAAGAAGTTCATA 59.296 38.462 5.50 0.00 0.00 2.15
3994 4215 7.225931 GGCGATACAACCATAAGAAGTTCATAA 59.774 37.037 5.50 0.00 0.00 1.90
3995 4216 8.062448 GCGATACAACCATAAGAAGTTCATAAC 58.938 37.037 5.50 0.00 0.00 1.89
3996 4217 8.548721 CGATACAACCATAAGAAGTTCATAACC 58.451 37.037 5.50 0.00 0.00 2.85
3997 4218 9.391006 GATACAACCATAAGAAGTTCATAACCA 57.609 33.333 5.50 0.00 0.00 3.67
3998 4219 9.747898 ATACAACCATAAGAAGTTCATAACCAA 57.252 29.630 5.50 0.00 0.00 3.67
3999 4220 8.650143 ACAACCATAAGAAGTTCATAACCAAT 57.350 30.769 5.50 0.00 0.00 3.16
4000 4221 8.739972 ACAACCATAAGAAGTTCATAACCAATC 58.260 33.333 5.50 0.00 0.00 2.67
4001 4222 7.553881 ACCATAAGAAGTTCATAACCAATCG 57.446 36.000 5.50 0.00 0.00 3.34
4002 4223 7.110155 ACCATAAGAAGTTCATAACCAATCGT 58.890 34.615 5.50 0.00 0.00 3.73
4003 4224 7.280205 ACCATAAGAAGTTCATAACCAATCGTC 59.720 37.037 5.50 0.00 0.00 4.20
4004 4225 5.779806 AAGAAGTTCATAACCAATCGTCG 57.220 39.130 5.50 0.00 0.00 5.12
4005 4226 3.617263 AGAAGTTCATAACCAATCGTCGC 59.383 43.478 5.50 0.00 0.00 5.19
4006 4227 2.967362 AGTTCATAACCAATCGTCGCA 58.033 42.857 0.00 0.00 0.00 5.10
4007 4228 3.331150 AGTTCATAACCAATCGTCGCAA 58.669 40.909 0.00 0.00 0.00 4.85
4008 4229 3.749088 AGTTCATAACCAATCGTCGCAAA 59.251 39.130 0.00 0.00 0.00 3.68
4009 4230 4.394920 AGTTCATAACCAATCGTCGCAAAT 59.605 37.500 0.00 0.00 0.00 2.32
4010 4231 4.271590 TCATAACCAATCGTCGCAAATG 57.728 40.909 0.00 0.00 0.00 2.32
4011 4232 3.935828 TCATAACCAATCGTCGCAAATGA 59.064 39.130 0.00 0.00 0.00 2.57
4012 4233 4.393371 TCATAACCAATCGTCGCAAATGAA 59.607 37.500 0.00 0.00 0.00 2.57
4013 4234 3.848272 AACCAATCGTCGCAAATGAAT 57.152 38.095 0.00 0.00 0.00 2.57
4014 4235 3.848272 ACCAATCGTCGCAAATGAATT 57.152 38.095 0.00 0.00 0.00 2.17
4015 4236 4.173036 ACCAATCGTCGCAAATGAATTT 57.827 36.364 0.00 0.00 0.00 1.82
4035 4256 9.598517 TGAATTTGCAAATAATCCATAAAGGTC 57.401 29.630 24.35 13.48 39.02 3.85
4036 4257 8.962884 AATTTGCAAATAATCCATAAAGGTCC 57.037 30.769 24.35 0.00 39.02 4.46
4037 4258 5.766150 TGCAAATAATCCATAAAGGTCCG 57.234 39.130 0.00 0.00 39.02 4.79
4038 4259 5.441500 TGCAAATAATCCATAAAGGTCCGA 58.558 37.500 0.00 0.00 39.02 4.55
4039 4260 5.888724 TGCAAATAATCCATAAAGGTCCGAA 59.111 36.000 0.00 0.00 39.02 4.30
4040 4261 6.039270 TGCAAATAATCCATAAAGGTCCGAAG 59.961 38.462 0.00 0.00 39.02 3.79
4041 4262 6.039382 GCAAATAATCCATAAAGGTCCGAAGT 59.961 38.462 0.00 0.00 39.02 3.01
4042 4263 7.639945 CAAATAATCCATAAAGGTCCGAAGTC 58.360 38.462 0.00 0.00 39.02 3.01
4043 4264 6.749036 ATAATCCATAAAGGTCCGAAGTCT 57.251 37.500 0.00 0.00 39.02 3.24
4044 4265 3.887621 TCCATAAAGGTCCGAAGTCTG 57.112 47.619 0.00 0.00 39.02 3.51
4045 4266 3.437213 TCCATAAAGGTCCGAAGTCTGA 58.563 45.455 0.00 0.00 39.02 3.27
4046 4267 3.835978 TCCATAAAGGTCCGAAGTCTGAA 59.164 43.478 0.00 0.00 39.02 3.02
4047 4268 3.933332 CCATAAAGGTCCGAAGTCTGAAC 59.067 47.826 0.00 0.00 0.00 3.18
4048 4269 4.562757 CCATAAAGGTCCGAAGTCTGAACA 60.563 45.833 0.00 0.00 0.00 3.18
4049 4270 2.528041 AAGGTCCGAAGTCTGAACAC 57.472 50.000 0.00 0.00 0.00 3.32
4050 4271 1.410004 AGGTCCGAAGTCTGAACACA 58.590 50.000 0.00 0.00 0.00 3.72
4051 4272 1.068741 AGGTCCGAAGTCTGAACACAC 59.931 52.381 0.00 0.00 0.00 3.82
4052 4273 1.068741 GGTCCGAAGTCTGAACACACT 59.931 52.381 0.00 0.00 0.00 3.55
4053 4274 2.395654 GTCCGAAGTCTGAACACACTC 58.604 52.381 0.00 0.00 0.00 3.51
4054 4275 2.028876 TCCGAAGTCTGAACACACTCA 58.971 47.619 0.00 0.00 0.00 3.41
4055 4276 2.429250 TCCGAAGTCTGAACACACTCAA 59.571 45.455 0.00 0.00 0.00 3.02
4056 4277 3.118920 TCCGAAGTCTGAACACACTCAAA 60.119 43.478 0.00 0.00 0.00 2.69
4057 4278 3.621268 CCGAAGTCTGAACACACTCAAAA 59.379 43.478 0.00 0.00 0.00 2.44
4058 4279 4.260375 CCGAAGTCTGAACACACTCAAAAG 60.260 45.833 0.00 0.00 0.00 2.27
4059 4280 4.260375 CGAAGTCTGAACACACTCAAAAGG 60.260 45.833 0.00 0.00 0.00 3.11
4060 4281 4.487714 AGTCTGAACACACTCAAAAGGA 57.512 40.909 0.00 0.00 0.00 3.36
4061 4282 4.843728 AGTCTGAACACACTCAAAAGGAA 58.156 39.130 0.00 0.00 0.00 3.36
4062 4283 5.253330 AGTCTGAACACACTCAAAAGGAAA 58.747 37.500 0.00 0.00 0.00 3.13
4063 4284 5.888161 AGTCTGAACACACTCAAAAGGAAAT 59.112 36.000 0.00 0.00 0.00 2.17
4064 4285 6.378280 AGTCTGAACACACTCAAAAGGAAATT 59.622 34.615 0.00 0.00 0.00 1.82
4065 4286 7.556275 AGTCTGAACACACTCAAAAGGAAATTA 59.444 33.333 0.00 0.00 0.00 1.40
4066 4287 8.352942 GTCTGAACACACTCAAAAGGAAATTAT 58.647 33.333 0.00 0.00 0.00 1.28
4067 4288 8.567948 TCTGAACACACTCAAAAGGAAATTATC 58.432 33.333 0.00 0.00 0.00 1.75
4068 4289 8.231692 TGAACACACTCAAAAGGAAATTATCA 57.768 30.769 0.00 0.00 0.00 2.15
4069 4290 8.859090 TGAACACACTCAAAAGGAAATTATCAT 58.141 29.630 0.00 0.00 0.00 2.45
4072 4293 9.520515 ACACACTCAAAAGGAAATTATCATAGT 57.479 29.630 0.00 0.00 0.00 2.12
4093 4314 9.842444 CATAGTTTGACAAAATTAAAACAACCG 57.158 29.630 6.15 0.00 35.46 4.44
4094 4315 9.804758 ATAGTTTGACAAAATTAAAACAACCGA 57.195 25.926 6.15 0.00 35.46 4.69
4095 4316 8.535690 AGTTTGACAAAATTAAAACAACCGAA 57.464 26.923 1.27 0.00 35.46 4.30
4096 4317 8.652463 AGTTTGACAAAATTAAAACAACCGAAG 58.348 29.630 1.27 0.00 35.46 3.79
4097 4318 7.900864 GTTTGACAAAATTAAAACAACCGAAGG 59.099 33.333 1.27 0.00 41.95 3.46
4113 4334 4.571372 CGAAGGTACTAGAGGACCAATC 57.429 50.000 13.57 9.64 38.49 2.67
4114 4335 3.318557 CGAAGGTACTAGAGGACCAATCC 59.681 52.174 13.57 0.00 42.27 3.01
4115 4336 4.287552 GAAGGTACTAGAGGACCAATCCA 58.712 47.826 13.57 0.00 44.08 3.41
4116 4337 4.348020 AGGTACTAGAGGACCAATCCAA 57.652 45.455 13.57 0.00 43.22 3.53
4117 4338 4.695606 AGGTACTAGAGGACCAATCCAAA 58.304 43.478 13.57 0.00 43.22 3.28
4118 4339 5.289510 AGGTACTAGAGGACCAATCCAAAT 58.710 41.667 13.57 0.00 43.22 2.32
4119 4340 5.367060 AGGTACTAGAGGACCAATCCAAATC 59.633 44.000 13.57 0.00 43.22 2.17
4120 4341 7.042025 AGGTACTAGAGGACCAATCCAAATCA 61.042 42.308 13.57 0.00 43.22 2.57
4121 4342 8.307246 AGGTACTAGAGGACCAATCCAAATCAT 61.307 40.741 13.57 0.00 43.22 2.45
4126 4347 4.861102 GGACCAATCCAAATCATCATCC 57.139 45.455 0.00 0.00 45.47 3.51
4127 4348 4.217510 GGACCAATCCAAATCATCATCCA 58.782 43.478 0.00 0.00 45.47 3.41
4128 4349 4.836736 GGACCAATCCAAATCATCATCCAT 59.163 41.667 0.00 0.00 45.47 3.41
4129 4350 5.047519 GGACCAATCCAAATCATCATCCATC 60.048 44.000 0.00 0.00 45.47 3.51
4130 4351 5.712752 ACCAATCCAAATCATCATCCATCT 58.287 37.500 0.00 0.00 0.00 2.90
4131 4352 6.141083 ACCAATCCAAATCATCATCCATCTT 58.859 36.000 0.00 0.00 0.00 2.40
4132 4353 6.614087 ACCAATCCAAATCATCATCCATCTTT 59.386 34.615 0.00 0.00 0.00 2.52
4133 4354 6.929049 CCAATCCAAATCATCATCCATCTTTG 59.071 38.462 0.00 0.00 0.00 2.77
4134 4355 6.665992 ATCCAAATCATCATCCATCTTTGG 57.334 37.500 5.68 5.68 45.15 3.28
4135 4356 4.342951 TCCAAATCATCATCCATCTTTGGC 59.657 41.667 6.93 0.00 43.29 4.52
4136 4357 4.344102 CCAAATCATCATCCATCTTTGGCT 59.656 41.667 0.00 0.00 43.29 4.75
4137 4358 5.289595 CAAATCATCATCCATCTTTGGCTG 58.710 41.667 0.00 0.00 43.29 4.85
4138 4359 2.304092 TCATCATCCATCTTTGGCTGC 58.696 47.619 0.00 0.00 43.29 5.25
4139 4360 2.092049 TCATCATCCATCTTTGGCTGCT 60.092 45.455 0.00 0.00 43.29 4.24
4140 4361 1.758936 TCATCCATCTTTGGCTGCTG 58.241 50.000 0.00 0.00 43.29 4.41
4141 4362 0.744874 CATCCATCTTTGGCTGCTGG 59.255 55.000 0.00 0.00 43.29 4.85
4142 4363 1.041447 ATCCATCTTTGGCTGCTGGC 61.041 55.000 10.40 10.40 43.29 4.85
4143 4364 1.681327 CCATCTTTGGCTGCTGGCT 60.681 57.895 17.87 0.00 41.46 4.75
4144 4365 1.664321 CCATCTTTGGCTGCTGGCTC 61.664 60.000 17.87 2.09 41.46 4.70
4145 4366 0.680280 CATCTTTGGCTGCTGGCTCT 60.680 55.000 17.87 0.00 41.46 4.09
4146 4367 0.680280 ATCTTTGGCTGCTGGCTCTG 60.680 55.000 17.87 7.86 41.46 3.35
4147 4368 2.282674 TTTGGCTGCTGGCTCTGG 60.283 61.111 17.87 0.00 41.46 3.86
4148 4369 3.873679 TTTGGCTGCTGGCTCTGGG 62.874 63.158 17.87 0.00 41.46 4.45
4152 4373 4.421515 CTGCTGGCTCTGGGTGGG 62.422 72.222 0.00 0.00 0.00 4.61
4154 4375 3.009115 GCTGGCTCTGGGTGGGTA 61.009 66.667 0.00 0.00 0.00 3.69
4155 4376 2.990479 CTGGCTCTGGGTGGGTAC 59.010 66.667 0.00 0.00 0.00 3.34
4156 4377 1.918293 CTGGCTCTGGGTGGGTACA 60.918 63.158 0.00 0.00 0.00 2.90
4157 4378 1.229820 TGGCTCTGGGTGGGTACAT 60.230 57.895 0.00 0.00 0.00 2.29
4158 4379 0.844661 TGGCTCTGGGTGGGTACATT 60.845 55.000 0.00 0.00 0.00 2.71
4159 4380 1.209621 GGCTCTGGGTGGGTACATTA 58.790 55.000 0.00 0.00 0.00 1.90
4160 4381 1.134189 GGCTCTGGGTGGGTACATTAC 60.134 57.143 0.00 0.00 0.00 1.89
4161 4382 1.557832 GCTCTGGGTGGGTACATTACA 59.442 52.381 0.00 0.00 0.00 2.41
4162 4383 2.026636 GCTCTGGGTGGGTACATTACAA 60.027 50.000 0.00 0.00 0.00 2.41
4163 4384 3.560453 GCTCTGGGTGGGTACATTACAAA 60.560 47.826 0.00 0.00 0.00 2.83
4164 4385 4.658063 CTCTGGGTGGGTACATTACAAAA 58.342 43.478 0.00 0.00 0.00 2.44
4165 4386 4.400120 TCTGGGTGGGTACATTACAAAAC 58.600 43.478 0.00 0.00 0.00 2.43
4166 4387 4.141228 TCTGGGTGGGTACATTACAAAACA 60.141 41.667 0.00 0.00 0.00 2.83
4167 4388 4.145807 TGGGTGGGTACATTACAAAACAG 58.854 43.478 0.00 0.00 0.00 3.16
4168 4389 4.146564 GGGTGGGTACATTACAAAACAGT 58.853 43.478 0.00 0.00 0.00 3.55
4169 4390 5.163120 TGGGTGGGTACATTACAAAACAGTA 60.163 40.000 0.00 0.00 0.00 2.74
4170 4391 5.769162 GGGTGGGTACATTACAAAACAGTAA 59.231 40.000 0.00 0.00 38.25 2.24
4171 4392 6.264970 GGGTGGGTACATTACAAAACAGTAAA 59.735 38.462 0.00 0.00 37.50 2.01
4172 4393 7.201893 GGGTGGGTACATTACAAAACAGTAAAA 60.202 37.037 0.00 0.00 37.50 1.52
4173 4394 7.648908 GGTGGGTACATTACAAAACAGTAAAAC 59.351 37.037 0.00 0.00 37.50 2.43
4174 4395 8.407832 GTGGGTACATTACAAAACAGTAAAACT 58.592 33.333 0.00 0.00 37.50 2.66
4175 4396 8.968969 TGGGTACATTACAAAACAGTAAAACTT 58.031 29.630 0.00 0.00 37.50 2.66
4180 4401 8.688151 ACATTACAAAACAGTAAAACTTAGCCA 58.312 29.630 0.00 0.00 37.50 4.75
4181 4402 8.964150 CATTACAAAACAGTAAAACTTAGCCAC 58.036 33.333 0.00 0.00 37.50 5.01
4182 4403 5.898174 ACAAAACAGTAAAACTTAGCCACC 58.102 37.500 0.00 0.00 0.00 4.61
4183 4404 5.655090 ACAAAACAGTAAAACTTAGCCACCT 59.345 36.000 0.00 0.00 0.00 4.00
4184 4405 6.829811 ACAAAACAGTAAAACTTAGCCACCTA 59.170 34.615 0.00 0.00 0.00 3.08
4185 4406 7.504574 ACAAAACAGTAAAACTTAGCCACCTAT 59.495 33.333 0.00 0.00 0.00 2.57
4186 4407 7.448748 AAACAGTAAAACTTAGCCACCTATG 57.551 36.000 0.00 0.00 0.00 2.23
4187 4408 4.941873 ACAGTAAAACTTAGCCACCTATGC 59.058 41.667 0.00 0.00 0.00 3.14
4188 4409 4.335594 CAGTAAAACTTAGCCACCTATGCC 59.664 45.833 0.00 0.00 0.00 4.40
4189 4410 2.437085 AAACTTAGCCACCTATGCCC 57.563 50.000 0.00 0.00 0.00 5.36
4190 4411 0.551396 AACTTAGCCACCTATGCCCC 59.449 55.000 0.00 0.00 0.00 5.80
4191 4412 0.327576 ACTTAGCCACCTATGCCCCT 60.328 55.000 0.00 0.00 0.00 4.79
4192 4413 0.846693 CTTAGCCACCTATGCCCCTT 59.153 55.000 0.00 0.00 0.00 3.95
4193 4414 0.843984 TTAGCCACCTATGCCCCTTC 59.156 55.000 0.00 0.00 0.00 3.46
4194 4415 0.327095 TAGCCACCTATGCCCCTTCA 60.327 55.000 0.00 0.00 0.00 3.02
4195 4416 0.995675 AGCCACCTATGCCCCTTCAT 60.996 55.000 0.00 0.00 0.00 2.57
4196 4417 0.771127 GCCACCTATGCCCCTTCATA 59.229 55.000 0.00 0.00 0.00 2.15
4197 4418 1.271597 GCCACCTATGCCCCTTCATAG 60.272 57.143 4.31 4.31 43.34 2.23
4198 4419 2.057922 CCACCTATGCCCCTTCATAGT 58.942 52.381 9.18 0.00 42.59 2.12
4199 4420 2.224621 CCACCTATGCCCCTTCATAGTG 60.225 54.545 9.18 7.66 42.59 2.74
4200 4421 2.705658 CACCTATGCCCCTTCATAGTGA 59.294 50.000 9.18 0.00 42.59 3.41
4201 4422 3.328931 CACCTATGCCCCTTCATAGTGAT 59.671 47.826 9.18 0.00 42.59 3.06
4202 4423 3.983410 ACCTATGCCCCTTCATAGTGATT 59.017 43.478 9.18 0.00 42.59 2.57
4203 4424 4.416848 ACCTATGCCCCTTCATAGTGATTT 59.583 41.667 9.18 0.00 42.59 2.17
4204 4425 4.763793 CCTATGCCCCTTCATAGTGATTTG 59.236 45.833 9.18 0.00 42.59 2.32
4205 4426 4.524802 ATGCCCCTTCATAGTGATTTGA 57.475 40.909 0.00 0.00 0.00 2.69
4206 4427 3.620488 TGCCCCTTCATAGTGATTTGAC 58.380 45.455 0.00 0.00 0.00 3.18
4207 4428 2.614057 GCCCCTTCATAGTGATTTGACG 59.386 50.000 0.00 0.00 0.00 4.35
4208 4429 3.873910 CCCCTTCATAGTGATTTGACGT 58.126 45.455 0.00 0.00 0.00 4.34
4209 4430 4.261801 CCCCTTCATAGTGATTTGACGTT 58.738 43.478 0.00 0.00 0.00 3.99
4210 4431 4.332819 CCCCTTCATAGTGATTTGACGTTC 59.667 45.833 0.00 0.00 0.00 3.95
4211 4432 5.178797 CCCTTCATAGTGATTTGACGTTCT 58.821 41.667 0.00 0.00 0.00 3.01
4212 4433 5.292101 CCCTTCATAGTGATTTGACGTTCTC 59.708 44.000 0.00 0.00 0.00 2.87
4213 4434 5.869344 CCTTCATAGTGATTTGACGTTCTCA 59.131 40.000 0.00 0.00 0.00 3.27
4214 4435 6.368791 CCTTCATAGTGATTTGACGTTCTCAA 59.631 38.462 0.00 0.00 37.08 3.02
4215 4436 6.706055 TCATAGTGATTTGACGTTCTCAAC 57.294 37.500 0.00 0.00 38.70 3.18
4216 4437 5.637810 TCATAGTGATTTGACGTTCTCAACC 59.362 40.000 0.00 0.00 38.70 3.77
4217 4438 3.804036 AGTGATTTGACGTTCTCAACCA 58.196 40.909 0.00 0.00 38.70 3.67
4218 4439 4.389374 AGTGATTTGACGTTCTCAACCAT 58.611 39.130 0.00 0.00 38.70 3.55
4219 4440 4.452455 AGTGATTTGACGTTCTCAACCATC 59.548 41.667 0.00 0.00 38.70 3.51
4220 4441 4.213270 GTGATTTGACGTTCTCAACCATCA 59.787 41.667 0.00 0.00 38.70 3.07
4221 4442 4.452114 TGATTTGACGTTCTCAACCATCAG 59.548 41.667 0.00 0.00 38.70 2.90
4222 4443 3.744238 TTGACGTTCTCAACCATCAGA 57.256 42.857 0.00 0.00 33.65 3.27
4223 4444 3.961480 TGACGTTCTCAACCATCAGAT 57.039 42.857 0.00 0.00 0.00 2.90
4224 4445 3.849911 TGACGTTCTCAACCATCAGATC 58.150 45.455 0.00 0.00 0.00 2.75
4225 4446 2.854777 GACGTTCTCAACCATCAGATCG 59.145 50.000 0.00 0.00 37.69 3.69
4226 4447 1.590238 CGTTCTCAACCATCAGATCGC 59.410 52.381 0.00 0.00 0.00 4.58
4227 4448 2.736719 CGTTCTCAACCATCAGATCGCT 60.737 50.000 0.00 0.00 0.00 4.93
4228 4449 3.489229 CGTTCTCAACCATCAGATCGCTA 60.489 47.826 0.00 0.00 0.00 4.26
4229 4450 4.433615 GTTCTCAACCATCAGATCGCTAA 58.566 43.478 0.00 0.00 0.00 3.09
4230 4451 4.046938 TCTCAACCATCAGATCGCTAAC 57.953 45.455 0.00 0.00 0.00 2.34
4231 4452 3.447229 TCTCAACCATCAGATCGCTAACA 59.553 43.478 0.00 0.00 0.00 2.41
4232 4453 3.521560 TCAACCATCAGATCGCTAACAC 58.478 45.455 0.00 0.00 0.00 3.32
4233 4454 3.056179 TCAACCATCAGATCGCTAACACA 60.056 43.478 0.00 0.00 0.00 3.72
4234 4455 3.827008 ACCATCAGATCGCTAACACAT 57.173 42.857 0.00 0.00 0.00 3.21
4235 4456 3.461061 ACCATCAGATCGCTAACACATG 58.539 45.455 0.00 0.00 0.00 3.21
4236 4457 2.222678 CCATCAGATCGCTAACACATGC 59.777 50.000 0.00 0.00 0.00 4.06
4241 4462 4.624747 CGCTAACACATGCGTTCG 57.375 55.556 1.60 0.00 46.09 3.95
4242 4463 1.058748 CGCTAACACATGCGTTCGG 59.941 57.895 1.60 0.00 46.09 4.30
4243 4464 1.423845 GCTAACACATGCGTTCGGG 59.576 57.895 1.60 0.00 0.00 5.14
4244 4465 1.017177 GCTAACACATGCGTTCGGGA 61.017 55.000 1.60 0.00 0.00 5.14
4245 4466 1.651987 CTAACACATGCGTTCGGGAT 58.348 50.000 1.60 0.00 0.00 3.85
4246 4467 2.006888 CTAACACATGCGTTCGGGATT 58.993 47.619 1.60 0.00 0.00 3.01
4247 4468 2.102070 AACACATGCGTTCGGGATTA 57.898 45.000 0.00 0.00 0.00 1.75
4248 4469 2.102070 ACACATGCGTTCGGGATTAA 57.898 45.000 0.00 0.00 0.00 1.40
4249 4470 1.735571 ACACATGCGTTCGGGATTAAC 59.264 47.619 0.00 0.00 0.00 2.01
4250 4471 1.735018 CACATGCGTTCGGGATTAACA 59.265 47.619 0.00 0.00 0.00 2.41
4251 4472 2.006888 ACATGCGTTCGGGATTAACAG 58.993 47.619 0.00 0.00 0.00 3.16
4252 4473 1.330521 CATGCGTTCGGGATTAACAGG 59.669 52.381 0.00 0.00 0.00 4.00
4253 4474 0.391927 TGCGTTCGGGATTAACAGGG 60.392 55.000 0.00 0.00 0.00 4.45
4254 4475 0.392060 GCGTTCGGGATTAACAGGGT 60.392 55.000 0.00 0.00 0.00 4.34
4255 4476 1.947212 GCGTTCGGGATTAACAGGGTT 60.947 52.381 0.00 0.00 0.00 4.11
4256 4477 1.735571 CGTTCGGGATTAACAGGGTTG 59.264 52.381 0.00 0.00 0.00 3.77
4257 4478 2.786777 GTTCGGGATTAACAGGGTTGT 58.213 47.619 0.00 0.00 39.87 3.32
4258 4479 2.745821 GTTCGGGATTAACAGGGTTGTC 59.254 50.000 0.00 0.00 36.23 3.18
4259 4480 1.279846 TCGGGATTAACAGGGTTGTCC 59.720 52.381 6.75 6.75 36.23 4.02
4271 4492 3.603158 GGGTTGTCCCGCAAATAATTT 57.397 42.857 0.00 0.00 44.74 1.82
4272 4493 3.932822 GGGTTGTCCCGCAAATAATTTT 58.067 40.909 0.00 0.00 44.74 1.82
4273 4494 5.074584 GGGTTGTCCCGCAAATAATTTTA 57.925 39.130 0.00 0.00 44.74 1.52
4274 4495 4.865925 GGGTTGTCCCGCAAATAATTTTAC 59.134 41.667 0.00 0.00 44.74 2.01
4275 4496 4.559643 GGTTGTCCCGCAAATAATTTTACG 59.440 41.667 0.00 0.00 39.03 3.18
4276 4497 3.760537 TGTCCCGCAAATAATTTTACGC 58.239 40.909 0.00 0.00 31.60 4.42
4277 4498 3.440872 TGTCCCGCAAATAATTTTACGCT 59.559 39.130 0.00 0.00 31.60 5.07
4278 4499 4.634883 TGTCCCGCAAATAATTTTACGCTA 59.365 37.500 0.00 0.00 31.60 4.26
4279 4500 5.123502 TGTCCCGCAAATAATTTTACGCTAA 59.876 36.000 0.00 0.00 31.60 3.09
4280 4501 6.183360 TGTCCCGCAAATAATTTTACGCTAAT 60.183 34.615 0.00 0.00 31.60 1.73
4281 4502 6.693978 GTCCCGCAAATAATTTTACGCTAATT 59.306 34.615 0.00 0.00 31.60 1.40
4282 4503 7.856894 GTCCCGCAAATAATTTTACGCTAATTA 59.143 33.333 0.00 0.00 31.60 1.40
4283 4504 8.569641 TCCCGCAAATAATTTTACGCTAATTAT 58.430 29.630 0.00 0.00 38.93 1.28
4284 4505 9.187455 CCCGCAAATAATTTTACGCTAATTATT 57.813 29.630 12.97 12.97 44.19 1.40
4295 4516 5.978934 ACGCTAATTATTTACCTGTTCCG 57.021 39.130 0.00 0.00 0.00 4.30
4296 4517 4.812626 ACGCTAATTATTTACCTGTTCCGG 59.187 41.667 0.00 0.00 0.00 5.14
4297 4518 4.319261 CGCTAATTATTTACCTGTTCCGGC 60.319 45.833 0.00 0.00 0.00 6.13
4298 4519 4.023450 GCTAATTATTTACCTGTTCCGGCC 60.023 45.833 0.00 0.00 0.00 6.13
4299 4520 3.945640 ATTATTTACCTGTTCCGGCCT 57.054 42.857 0.00 0.00 0.00 5.19
4300 4521 2.702592 TATTTACCTGTTCCGGCCTG 57.297 50.000 0.00 0.00 0.00 4.85
4301 4522 0.034477 ATTTACCTGTTCCGGCCTGG 60.034 55.000 0.00 13.10 40.09 4.45
4302 4523 2.757980 TTTACCTGTTCCGGCCTGGC 62.758 60.000 11.05 11.05 37.80 4.85
4322 4543 3.509659 GCTCGGGGCAACATTACC 58.490 61.111 0.00 0.00 41.35 2.85
4323 4544 2.119029 GCTCGGGGCAACATTACCC 61.119 63.158 0.00 0.00 46.24 3.69
4327 4548 4.355151 GGGCAACATTACCCCAGG 57.645 61.111 0.00 0.00 40.56 4.45
4328 4549 2.058001 GGGCAACATTACCCCAGGC 61.058 63.158 0.00 0.00 40.56 4.85
4329 4550 2.058001 GGCAACATTACCCCAGGCC 61.058 63.158 0.00 0.00 0.00 5.19
4330 4551 2.414785 GCAACATTACCCCAGGCCG 61.415 63.158 0.00 0.00 0.00 6.13
4331 4552 2.044352 AACATTACCCCAGGCCGC 60.044 61.111 0.00 0.00 0.00 6.53
4332 4553 2.612493 AACATTACCCCAGGCCGCT 61.612 57.895 0.00 0.00 0.00 5.52
4333 4554 2.516930 CATTACCCCAGGCCGCTG 60.517 66.667 0.00 0.00 0.00 5.18
4334 4555 4.506255 ATTACCCCAGGCCGCTGC 62.506 66.667 0.00 0.00 0.00 5.25
4341 4562 4.415332 CAGGCCGCTGCTTTGCTG 62.415 66.667 0.00 0.00 37.74 4.41
4342 4563 4.648626 AGGCCGCTGCTTTGCTGA 62.649 61.111 0.00 0.00 37.74 4.26
4343 4564 3.673484 GGCCGCTGCTTTGCTGAA 61.673 61.111 0.00 0.00 37.74 3.02
4344 4565 2.336088 GCCGCTGCTTTGCTGAAA 59.664 55.556 0.00 0.00 33.53 2.69
4345 4566 1.080298 GCCGCTGCTTTGCTGAAAT 60.080 52.632 0.00 0.00 33.53 2.17
4346 4567 1.074872 GCCGCTGCTTTGCTGAAATC 61.075 55.000 0.00 0.00 33.53 2.17
4347 4568 0.241749 CCGCTGCTTTGCTGAAATCA 59.758 50.000 0.00 0.00 0.00 2.57
4348 4569 1.334054 CGCTGCTTTGCTGAAATCAC 58.666 50.000 0.00 0.00 0.00 3.06
4349 4570 1.068748 CGCTGCTTTGCTGAAATCACT 60.069 47.619 0.00 0.00 0.00 3.41
4350 4571 2.160219 CGCTGCTTTGCTGAAATCACTA 59.840 45.455 0.00 0.00 0.00 2.74
4351 4572 3.365264 CGCTGCTTTGCTGAAATCACTAA 60.365 43.478 0.00 0.00 0.00 2.24
4352 4573 4.673580 CGCTGCTTTGCTGAAATCACTAAT 60.674 41.667 0.00 0.00 0.00 1.73
4353 4574 5.166398 GCTGCTTTGCTGAAATCACTAATT 58.834 37.500 0.00 0.00 0.00 1.40
4354 4575 6.324819 GCTGCTTTGCTGAAATCACTAATTA 58.675 36.000 0.00 0.00 0.00 1.40
4355 4576 6.808212 GCTGCTTTGCTGAAATCACTAATTAA 59.192 34.615 0.00 0.00 0.00 1.40
4356 4577 7.008992 GCTGCTTTGCTGAAATCACTAATTAAG 59.991 37.037 0.00 0.00 0.00 1.85
4357 4578 7.315142 TGCTTTGCTGAAATCACTAATTAAGG 58.685 34.615 0.00 0.00 0.00 2.69
4358 4579 7.176515 TGCTTTGCTGAAATCACTAATTAAGGA 59.823 33.333 0.00 0.00 0.00 3.36
4359 4580 7.699812 GCTTTGCTGAAATCACTAATTAAGGAG 59.300 37.037 0.00 0.00 0.00 3.69
4360 4581 8.635765 TTTGCTGAAATCACTAATTAAGGAGT 57.364 30.769 0.00 0.00 0.00 3.85
4361 4582 9.733556 TTTGCTGAAATCACTAATTAAGGAGTA 57.266 29.630 0.00 0.00 0.00 2.59
4362 4583 8.718102 TGCTGAAATCACTAATTAAGGAGTAC 57.282 34.615 0.00 0.00 0.00 2.73
4363 4584 8.540388 TGCTGAAATCACTAATTAAGGAGTACT 58.460 33.333 0.00 0.00 0.00 2.73
4364 4585 9.036671 GCTGAAATCACTAATTAAGGAGTACTC 57.963 37.037 14.87 14.87 0.00 2.59
4365 4586 9.239002 CTGAAATCACTAATTAAGGAGTACTCG 57.761 37.037 16.56 2.92 0.00 4.18
4366 4587 8.746530 TGAAATCACTAATTAAGGAGTACTCGT 58.253 33.333 16.56 14.43 0.00 4.18
4367 4588 9.583765 GAAATCACTAATTAAGGAGTACTCGTT 57.416 33.333 28.20 28.20 40.33 3.85
4368 4589 8.928270 AATCACTAATTAAGGAGTACTCGTTG 57.072 34.615 31.33 20.36 38.07 4.10
4369 4590 6.327934 TCACTAATTAAGGAGTACTCGTTGC 58.672 40.000 31.33 13.49 38.07 4.17
4370 4591 6.071784 TCACTAATTAAGGAGTACTCGTTGCA 60.072 38.462 31.33 21.45 38.07 4.08
4371 4592 6.588756 CACTAATTAAGGAGTACTCGTTGCAA 59.411 38.462 31.33 22.18 38.07 4.08
4372 4593 7.117236 CACTAATTAAGGAGTACTCGTTGCAAA 59.883 37.037 31.33 21.62 38.07 3.68
4373 4594 6.481954 AATTAAGGAGTACTCGTTGCAAAG 57.518 37.500 31.33 2.46 38.07 2.77
4374 4595 3.746045 AAGGAGTACTCGTTGCAAAGA 57.254 42.857 25.72 14.45 36.47 2.52
4375 4596 3.746045 AGGAGTACTCGTTGCAAAGAA 57.254 42.857 15.91 0.00 0.00 2.52
4376 4597 3.391049 AGGAGTACTCGTTGCAAAGAAC 58.609 45.455 15.91 11.95 0.00 3.01
4377 4598 3.128349 GGAGTACTCGTTGCAAAGAACA 58.872 45.455 15.91 4.24 0.00 3.18
4378 4599 3.059800 GGAGTACTCGTTGCAAAGAACAC 60.060 47.826 15.91 14.96 0.00 3.32
4379 4600 3.793559 AGTACTCGTTGCAAAGAACACT 58.206 40.909 15.91 16.69 0.00 3.55
4380 4601 3.802685 AGTACTCGTTGCAAAGAACACTC 59.197 43.478 15.91 5.78 0.00 3.51
4381 4602 1.940613 ACTCGTTGCAAAGAACACTCC 59.059 47.619 15.91 0.00 0.00 3.85
4382 4603 1.939934 CTCGTTGCAAAGAACACTCCA 59.060 47.619 15.91 0.00 0.00 3.86
4383 4604 1.668751 TCGTTGCAAAGAACACTCCAC 59.331 47.619 12.88 0.00 0.00 4.02
4384 4605 1.268539 CGTTGCAAAGAACACTCCACC 60.269 52.381 6.52 0.00 0.00 4.61
4385 4606 2.024414 GTTGCAAAGAACACTCCACCT 58.976 47.619 0.00 0.00 0.00 4.00
4386 4607 2.427095 GTTGCAAAGAACACTCCACCTT 59.573 45.455 0.00 0.00 0.00 3.50
4387 4608 2.297701 TGCAAAGAACACTCCACCTTC 58.702 47.619 0.00 0.00 0.00 3.46
4388 4609 2.092429 TGCAAAGAACACTCCACCTTCT 60.092 45.455 0.00 0.00 0.00 2.85
4389 4610 2.550180 GCAAAGAACACTCCACCTTCTC 59.450 50.000 0.00 0.00 0.00 2.87
4390 4611 3.808728 CAAAGAACACTCCACCTTCTCA 58.191 45.455 0.00 0.00 0.00 3.27
4391 4612 3.760580 AAGAACACTCCACCTTCTCAG 57.239 47.619 0.00 0.00 0.00 3.35
4402 4623 2.071688 CCTTCTCAGGTCACGACAAG 57.928 55.000 0.00 0.00 35.06 3.16
4403 4624 1.341531 CCTTCTCAGGTCACGACAAGT 59.658 52.381 0.00 0.00 35.06 3.16
4404 4625 2.557056 CCTTCTCAGGTCACGACAAGTA 59.443 50.000 0.00 0.00 35.06 2.24
4405 4626 3.366476 CCTTCTCAGGTCACGACAAGTAG 60.366 52.174 0.00 0.00 35.06 2.57
4406 4627 1.540267 TCTCAGGTCACGACAAGTAGC 59.460 52.381 0.00 0.00 0.00 3.58
4407 4628 0.240145 TCAGGTCACGACAAGTAGCG 59.760 55.000 0.00 0.00 0.00 4.26
4408 4629 1.080705 AGGTCACGACAAGTAGCGC 60.081 57.895 0.00 0.00 0.00 5.92
4409 4630 1.372499 GGTCACGACAAGTAGCGCA 60.372 57.895 11.47 0.00 0.00 6.09
4410 4631 1.615107 GGTCACGACAAGTAGCGCAC 61.615 60.000 11.47 5.97 0.00 5.34
4411 4632 0.937699 GTCACGACAAGTAGCGCACA 60.938 55.000 11.47 0.00 0.00 4.57
4412 4633 0.038618 TCACGACAAGTAGCGCACAT 60.039 50.000 11.47 0.00 0.00 3.21
4413 4634 0.093535 CACGACAAGTAGCGCACATG 59.906 55.000 11.47 11.63 32.04 3.21
4414 4635 1.059369 CGACAAGTAGCGCACATGC 59.941 57.895 11.47 5.15 37.78 4.06
4415 4636 1.625759 CGACAAGTAGCGCACATGCA 61.626 55.000 11.47 0.00 42.21 3.96
4416 4637 0.095935 GACAAGTAGCGCACATGCAG 59.904 55.000 11.47 0.00 42.21 4.41
4417 4638 1.226211 CAAGTAGCGCACATGCAGC 60.226 57.895 11.47 8.42 42.21 5.25
4436 4657 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
4437 4658 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
4438 4659 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
4439 4660 2.260869 CCACTTGTCGCAACCTGGG 61.261 63.158 0.00 0.00 0.00 4.45
4440 4661 1.227823 CACTTGTCGCAACCTGGGA 60.228 57.895 0.00 0.00 36.96 4.37
4441 4662 1.071471 ACTTGTCGCAACCTGGGAG 59.929 57.895 0.00 0.00 40.09 4.30
4442 4663 1.071471 CTTGTCGCAACCTGGGAGT 59.929 57.895 0.00 0.00 40.09 3.85
4443 4664 0.535102 CTTGTCGCAACCTGGGAGTT 60.535 55.000 0.00 0.00 40.09 3.01
4444 4665 0.106918 TTGTCGCAACCTGGGAGTTT 60.107 50.000 0.00 0.00 40.09 2.66
4445 4666 0.106918 TGTCGCAACCTGGGAGTTTT 60.107 50.000 0.00 0.00 40.09 2.43
4446 4667 0.591659 GTCGCAACCTGGGAGTTTTC 59.408 55.000 0.00 0.00 40.09 2.29
4447 4668 0.536460 TCGCAACCTGGGAGTTTTCC 60.536 55.000 0.00 0.00 43.23 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.226441 TCCAAGAAAGAACATCTCTGAATCAA 58.774 34.615 0.00 0.00 33.37 2.57
29 30 6.772605 TCCAAGAAAGAACATCTCTGAATCA 58.227 36.000 0.00 0.00 33.37 2.57
53 54 8.604640 TTATCGATCGTCTTCTACAGTATTCT 57.395 34.615 15.94 0.00 0.00 2.40
185 186 1.287730 GCACTGACAGCTCTTGACGG 61.288 60.000 1.25 0.00 34.55 4.79
204 208 2.096069 CACCTCGAGTTTTCTGTGCATG 60.096 50.000 12.31 0.00 0.00 4.06
259 263 2.733026 GCACCGTAAAACTTTCGAGCTA 59.267 45.455 0.00 0.00 0.00 3.32
293 297 1.213926 GATCTTCCCTGCCCAAGACAT 59.786 52.381 0.00 0.00 31.42 3.06
318 325 1.927174 CTCGAGGGATTTACTTGTGCG 59.073 52.381 3.91 0.00 0.00 5.34
364 373 3.911719 CTGAAATAAGCAGGGGCCT 57.088 52.632 0.84 0.00 42.56 5.19
407 416 8.567948 TGAAAGCTTGTAAAAGACATTTCTAGG 58.432 33.333 0.00 0.00 38.07 3.02
437 448 7.122055 TCAACCTTCATGTACAACTGAAAAACT 59.878 33.333 11.89 0.00 31.40 2.66
449 460 7.440523 AGAAGAACATTCAACCTTCATGTAC 57.559 36.000 0.00 0.00 37.92 2.90
490 501 5.940192 TTTTCTCAAATATGCACGAGTGT 57.060 34.783 5.07 0.00 0.00 3.55
512 523 8.043710 TGTTTGTACCATTCAACCTTCATTTTT 58.956 29.630 0.00 0.00 0.00 1.94
513 524 7.494298 GTGTTTGTACCATTCAACCTTCATTTT 59.506 33.333 0.00 0.00 0.00 1.82
514 525 6.983890 GTGTTTGTACCATTCAACCTTCATTT 59.016 34.615 0.00 0.00 0.00 2.32
515 526 6.323739 AGTGTTTGTACCATTCAACCTTCATT 59.676 34.615 0.00 0.00 0.00 2.57
516 527 5.833131 AGTGTTTGTACCATTCAACCTTCAT 59.167 36.000 0.00 0.00 0.00 2.57
517 528 5.197451 AGTGTTTGTACCATTCAACCTTCA 58.803 37.500 0.00 0.00 0.00 3.02
518 529 5.767816 AGTGTTTGTACCATTCAACCTTC 57.232 39.130 0.00 0.00 0.00 3.46
519 530 6.485648 GTCTAGTGTTTGTACCATTCAACCTT 59.514 38.462 0.00 0.00 0.00 3.50
520 531 5.995897 GTCTAGTGTTTGTACCATTCAACCT 59.004 40.000 0.00 0.00 0.00 3.50
521 532 5.107220 CGTCTAGTGTTTGTACCATTCAACC 60.107 44.000 0.00 0.00 0.00 3.77
522 533 5.693104 TCGTCTAGTGTTTGTACCATTCAAC 59.307 40.000 0.00 0.00 0.00 3.18
523 534 5.845103 TCGTCTAGTGTTTGTACCATTCAA 58.155 37.500 0.00 0.00 0.00 2.69
547 558 1.474077 CTGGGAACAAATAGGCAGCAC 59.526 52.381 0.00 0.00 42.06 4.40
554 565 8.616076 GTGATTCAGATTACTGGGAACAAATAG 58.384 37.037 0.00 0.00 43.60 1.73
567 579 3.126831 CTGGCCTCGTGATTCAGATTAC 58.873 50.000 3.32 0.00 0.00 1.89
570 582 0.179062 GCTGGCCTCGTGATTCAGAT 60.179 55.000 3.32 0.00 0.00 2.90
578 590 2.509336 CCGTTAGCTGGCCTCGTG 60.509 66.667 3.32 0.00 0.00 4.35
691 704 2.107204 AGTCCCTGTTTGTCTGCTTGAT 59.893 45.455 0.00 0.00 0.00 2.57
832 894 6.497259 ACCTAGTATCCTGAGACAACAGAAAA 59.503 38.462 0.00 0.00 39.94 2.29
841 903 4.075963 AGTCGACCTAGTATCCTGAGAC 57.924 50.000 13.01 0.00 0.00 3.36
940 1006 8.617809 TGTCAACTAAATAGACCTTTGTTTCAC 58.382 33.333 0.00 0.00 0.00 3.18
1023 1096 0.924090 CAAGCAATACGAGACCGAGC 59.076 55.000 0.00 0.00 39.50 5.03
1224 1318 2.552315 GCCTTCGGTCAAAGAAATGTCA 59.448 45.455 0.00 0.00 0.00 3.58
1339 1433 2.888414 GGTAGGGAGAAGAAGGATCTCG 59.112 54.545 0.00 0.00 43.43 4.04
1372 1466 0.393077 ACCGTGAACCTGTTCTGGAG 59.607 55.000 20.95 8.00 40.14 3.86
1479 1573 1.153628 GGATCCGTCCACCAAGTCG 60.154 63.158 0.00 0.00 44.42 4.18
1604 1698 5.602561 TCCATCAGTACCACATAGCTACAAT 59.397 40.000 0.00 0.00 0.00 2.71
1632 1726 1.171549 TGCTGAACTTGAATGCCGCA 61.172 50.000 0.00 0.00 0.00 5.69
1845 1939 2.582636 AGGGTTGCCTTCATAACCATCT 59.417 45.455 8.25 0.00 46.39 2.90
1946 2056 2.789409 AAGGGACCTCTACATGCAAC 57.211 50.000 0.00 0.00 0.00 4.17
2004 2170 6.308766 GCATTCATTAACGTCTGCAGAAAAAT 59.691 34.615 20.19 12.42 0.00 1.82
2032 2201 0.540365 CTGAAGGGCATGGGTTGTGT 60.540 55.000 0.00 0.00 0.00 3.72
2272 2456 9.860393 ATTGAGGAGAGGGGTAGTATATAAAAT 57.140 33.333 0.00 0.00 0.00 1.82
2572 2773 1.306654 ACCGTTCCATGGCCTCCTA 60.307 57.895 6.96 0.00 0.00 2.94
2606 2807 7.928908 TTTAATTGCAACAGACATGTTCTTC 57.071 32.000 0.00 0.00 46.90 2.87
2775 2979 9.472361 GATAAGCTCGAATAGTGTACCATTTAA 57.528 33.333 0.00 0.00 0.00 1.52
2864 3068 0.321996 AGAAGTTGAGTCCTTCGGCC 59.678 55.000 0.00 0.00 42.48 6.13
3010 3214 2.757314 TGAACCATTGTGACAAACTGCA 59.243 40.909 0.62 0.00 0.00 4.41
3152 3356 0.968393 GCTTCTCAGACCCCTCGAGT 60.968 60.000 12.31 0.00 0.00 4.18
3299 3503 4.835284 TTCACCACACATATCTAGGCAA 57.165 40.909 0.00 0.00 0.00 4.52
3575 3780 5.176406 GGTAACGAAGTACAGAAGGAACAAC 59.824 44.000 0.00 0.00 45.00 3.32
3670 3880 6.722129 GCAAGAGATAGACTCCCTATTAGGAA 59.278 42.308 11.52 0.00 45.96 3.36
3732 3943 5.178096 TGGATATTTCACATCACACACCT 57.822 39.130 0.00 0.00 0.00 4.00
3789 4010 9.453572 AGAAAGCATGTATGAATTAGACTTTCA 57.546 29.630 12.53 0.00 41.67 2.69
3935 4156 9.477484 AGCGTTCGAGTCAATAGATATTTTTAT 57.523 29.630 0.00 0.00 0.00 1.40
3936 4157 8.752254 CAGCGTTCGAGTCAATAGATATTTTTA 58.248 33.333 0.00 0.00 0.00 1.52
3937 4158 7.621991 CAGCGTTCGAGTCAATAGATATTTTT 58.378 34.615 0.00 0.00 0.00 1.94
3938 4159 6.292381 GCAGCGTTCGAGTCAATAGATATTTT 60.292 38.462 0.00 0.00 0.00 1.82
3939 4160 5.175856 GCAGCGTTCGAGTCAATAGATATTT 59.824 40.000 0.00 0.00 0.00 1.40
3940 4161 4.681942 GCAGCGTTCGAGTCAATAGATATT 59.318 41.667 0.00 0.00 0.00 1.28
3941 4162 4.230657 GCAGCGTTCGAGTCAATAGATAT 58.769 43.478 0.00 0.00 0.00 1.63
3942 4163 3.629058 GCAGCGTTCGAGTCAATAGATA 58.371 45.455 0.00 0.00 0.00 1.98
3943 4164 2.464865 GCAGCGTTCGAGTCAATAGAT 58.535 47.619 0.00 0.00 0.00 1.98
3944 4165 1.794076 CGCAGCGTTCGAGTCAATAGA 60.794 52.381 6.65 0.00 0.00 1.98
3945 4166 0.567968 CGCAGCGTTCGAGTCAATAG 59.432 55.000 6.65 0.00 0.00 1.73
3946 4167 0.800683 CCGCAGCGTTCGAGTCAATA 60.801 55.000 15.05 0.00 0.00 1.90
3947 4168 2.094659 CCGCAGCGTTCGAGTCAAT 61.095 57.895 15.05 0.00 0.00 2.57
3948 4169 2.686956 TTCCGCAGCGTTCGAGTCAA 62.687 55.000 15.05 0.00 0.00 3.18
3949 4170 3.202216 TTCCGCAGCGTTCGAGTCA 62.202 57.895 15.05 0.00 0.00 3.41
3950 4171 2.430244 TTCCGCAGCGTTCGAGTC 60.430 61.111 15.05 0.00 0.00 3.36
3951 4172 2.430921 CTTCCGCAGCGTTCGAGT 60.431 61.111 15.05 0.00 0.00 4.18
3952 4173 3.181967 CCTTCCGCAGCGTTCGAG 61.182 66.667 15.05 5.58 0.00 4.04
3959 4180 1.813753 TTGTATCGCCTTCCGCAGC 60.814 57.895 0.00 0.00 37.30 5.25
3960 4181 1.429148 GGTTGTATCGCCTTCCGCAG 61.429 60.000 0.00 0.00 37.30 5.18
3961 4182 1.448893 GGTTGTATCGCCTTCCGCA 60.449 57.895 0.00 0.00 37.30 5.69
3962 4183 0.814010 ATGGTTGTATCGCCTTCCGC 60.814 55.000 0.00 0.00 36.73 5.54
3963 4184 2.519377 TATGGTTGTATCGCCTTCCG 57.481 50.000 0.00 0.00 38.61 4.30
3964 4185 4.067972 TCTTATGGTTGTATCGCCTTCC 57.932 45.455 0.00 0.00 0.00 3.46
3965 4186 5.116882 ACTTCTTATGGTTGTATCGCCTTC 58.883 41.667 0.00 0.00 0.00 3.46
3966 4187 5.099042 ACTTCTTATGGTTGTATCGCCTT 57.901 39.130 0.00 0.00 0.00 4.35
3967 4188 4.755266 ACTTCTTATGGTTGTATCGCCT 57.245 40.909 0.00 0.00 0.00 5.52
3968 4189 4.873827 TGAACTTCTTATGGTTGTATCGCC 59.126 41.667 0.00 0.00 0.00 5.54
3969 4190 6.604735 ATGAACTTCTTATGGTTGTATCGC 57.395 37.500 0.00 0.00 0.00 4.58
3970 4191 8.548721 GGTTATGAACTTCTTATGGTTGTATCG 58.451 37.037 0.00 0.00 0.00 2.92
3971 4192 9.391006 TGGTTATGAACTTCTTATGGTTGTATC 57.609 33.333 0.00 0.00 0.00 2.24
3972 4193 9.747898 TTGGTTATGAACTTCTTATGGTTGTAT 57.252 29.630 0.00 0.00 0.00 2.29
3973 4194 9.747898 ATTGGTTATGAACTTCTTATGGTTGTA 57.252 29.630 0.00 0.00 0.00 2.41
3974 4195 8.650143 ATTGGTTATGAACTTCTTATGGTTGT 57.350 30.769 0.00 0.00 0.00 3.32
3975 4196 7.910162 CGATTGGTTATGAACTTCTTATGGTTG 59.090 37.037 0.00 0.00 0.00 3.77
3976 4197 7.610305 ACGATTGGTTATGAACTTCTTATGGTT 59.390 33.333 0.00 0.00 0.00 3.67
3977 4198 7.110155 ACGATTGGTTATGAACTTCTTATGGT 58.890 34.615 0.00 0.00 0.00 3.55
3978 4199 7.516785 CGACGATTGGTTATGAACTTCTTATGG 60.517 40.741 0.00 0.00 0.00 2.74
3979 4200 7.337718 CGACGATTGGTTATGAACTTCTTATG 58.662 38.462 0.00 0.00 0.00 1.90
3980 4201 6.018994 GCGACGATTGGTTATGAACTTCTTAT 60.019 38.462 0.00 0.00 0.00 1.73
3981 4202 5.290158 GCGACGATTGGTTATGAACTTCTTA 59.710 40.000 0.00 0.00 0.00 2.10
3982 4203 4.092968 GCGACGATTGGTTATGAACTTCTT 59.907 41.667 0.00 0.00 0.00 2.52
3983 4204 3.617263 GCGACGATTGGTTATGAACTTCT 59.383 43.478 0.00 0.00 0.00 2.85
3984 4205 3.369756 TGCGACGATTGGTTATGAACTTC 59.630 43.478 0.00 0.00 0.00 3.01
3985 4206 3.331150 TGCGACGATTGGTTATGAACTT 58.669 40.909 0.00 0.00 0.00 2.66
3986 4207 2.967362 TGCGACGATTGGTTATGAACT 58.033 42.857 0.00 0.00 0.00 3.01
3987 4208 3.733024 TTGCGACGATTGGTTATGAAC 57.267 42.857 0.00 0.00 0.00 3.18
3988 4209 4.393371 TCATTTGCGACGATTGGTTATGAA 59.607 37.500 0.00 0.00 0.00 2.57
3989 4210 3.935828 TCATTTGCGACGATTGGTTATGA 59.064 39.130 0.00 0.00 0.00 2.15
3990 4211 4.271590 TCATTTGCGACGATTGGTTATG 57.728 40.909 0.00 0.00 0.00 1.90
3991 4212 4.955925 TTCATTTGCGACGATTGGTTAT 57.044 36.364 0.00 0.00 0.00 1.89
3992 4213 4.955925 ATTCATTTGCGACGATTGGTTA 57.044 36.364 0.00 0.00 0.00 2.85
3993 4214 3.848272 ATTCATTTGCGACGATTGGTT 57.152 38.095 0.00 0.00 0.00 3.67
3994 4215 3.848272 AATTCATTTGCGACGATTGGT 57.152 38.095 0.00 0.00 0.00 3.67
3995 4216 4.488518 CAAATTCATTTGCGACGATTGG 57.511 40.909 0.00 0.00 40.42 3.16
4009 4230 9.598517 GACCTTTATGGATTATTTGCAAATTCA 57.401 29.630 28.45 20.24 39.71 2.57
4010 4231 9.045223 GGACCTTTATGGATTATTTGCAAATTC 57.955 33.333 28.45 20.13 39.71 2.17
4011 4232 7.710475 CGGACCTTTATGGATTATTTGCAAATT 59.290 33.333 28.45 12.90 39.71 1.82
4012 4233 7.069331 TCGGACCTTTATGGATTATTTGCAAAT 59.931 33.333 26.72 26.72 39.71 2.32
4013 4234 6.378564 TCGGACCTTTATGGATTATTTGCAAA 59.621 34.615 15.44 15.44 39.71 3.68
4014 4235 5.888724 TCGGACCTTTATGGATTATTTGCAA 59.111 36.000 0.00 0.00 39.71 4.08
4015 4236 5.441500 TCGGACCTTTATGGATTATTTGCA 58.558 37.500 0.00 0.00 39.71 4.08
4016 4237 6.039382 ACTTCGGACCTTTATGGATTATTTGC 59.961 38.462 0.00 0.00 39.71 3.68
4017 4238 7.499232 AGACTTCGGACCTTTATGGATTATTTG 59.501 37.037 0.00 0.00 39.71 2.32
4018 4239 7.499232 CAGACTTCGGACCTTTATGGATTATTT 59.501 37.037 0.00 0.00 39.71 1.40
4019 4240 6.992715 CAGACTTCGGACCTTTATGGATTATT 59.007 38.462 0.00 0.00 39.71 1.40
4020 4241 6.326583 TCAGACTTCGGACCTTTATGGATTAT 59.673 38.462 0.00 0.00 39.71 1.28
4021 4242 5.659525 TCAGACTTCGGACCTTTATGGATTA 59.340 40.000 0.00 0.00 39.71 1.75
4022 4243 4.469945 TCAGACTTCGGACCTTTATGGATT 59.530 41.667 0.00 0.00 39.71 3.01
4023 4244 4.030913 TCAGACTTCGGACCTTTATGGAT 58.969 43.478 0.00 0.00 39.71 3.41
4024 4245 3.437213 TCAGACTTCGGACCTTTATGGA 58.563 45.455 0.00 0.00 39.71 3.41
4025 4246 3.887621 TCAGACTTCGGACCTTTATGG 57.112 47.619 0.00 0.00 42.93 2.74
4026 4247 4.389077 GTGTTCAGACTTCGGACCTTTATG 59.611 45.833 0.00 0.00 0.00 1.90
4027 4248 4.039973 TGTGTTCAGACTTCGGACCTTTAT 59.960 41.667 0.00 0.00 0.00 1.40
4028 4249 3.385433 TGTGTTCAGACTTCGGACCTTTA 59.615 43.478 0.00 0.00 0.00 1.85
4029 4250 2.169769 TGTGTTCAGACTTCGGACCTTT 59.830 45.455 0.00 0.00 0.00 3.11
4030 4251 1.760613 TGTGTTCAGACTTCGGACCTT 59.239 47.619 0.00 0.00 0.00 3.50
4031 4252 1.068741 GTGTGTTCAGACTTCGGACCT 59.931 52.381 0.00 0.00 0.00 3.85
4032 4253 1.068741 AGTGTGTTCAGACTTCGGACC 59.931 52.381 0.00 0.00 0.00 4.46
4033 4254 2.223735 TGAGTGTGTTCAGACTTCGGAC 60.224 50.000 4.22 0.00 0.00 4.79
4034 4255 2.028876 TGAGTGTGTTCAGACTTCGGA 58.971 47.619 4.22 0.00 0.00 4.55
4035 4256 2.509052 TGAGTGTGTTCAGACTTCGG 57.491 50.000 4.22 0.00 0.00 4.30
4036 4257 4.260375 CCTTTTGAGTGTGTTCAGACTTCG 60.260 45.833 4.22 0.00 0.00 3.79
4037 4258 4.876107 TCCTTTTGAGTGTGTTCAGACTTC 59.124 41.667 4.22 0.06 0.00 3.01
4038 4259 4.843728 TCCTTTTGAGTGTGTTCAGACTT 58.156 39.130 4.22 0.00 0.00 3.01
4039 4260 4.487714 TCCTTTTGAGTGTGTTCAGACT 57.512 40.909 2.30 2.30 0.00 3.24
4040 4261 5.560966 TTTCCTTTTGAGTGTGTTCAGAC 57.439 39.130 0.00 0.00 0.00 3.51
4041 4262 6.773976 AATTTCCTTTTGAGTGTGTTCAGA 57.226 33.333 0.00 0.00 0.00 3.27
4042 4263 8.352201 TGATAATTTCCTTTTGAGTGTGTTCAG 58.648 33.333 0.00 0.00 0.00 3.02
4043 4264 8.231692 TGATAATTTCCTTTTGAGTGTGTTCA 57.768 30.769 0.00 0.00 0.00 3.18
4046 4267 9.520515 ACTATGATAATTTCCTTTTGAGTGTGT 57.479 29.630 0.00 0.00 0.00 3.72
4067 4288 9.842444 CGGTTGTTTTAATTTTGTCAAACTATG 57.158 29.630 0.00 0.00 31.59 2.23
4068 4289 9.804758 TCGGTTGTTTTAATTTTGTCAAACTAT 57.195 25.926 0.00 0.00 31.59 2.12
4069 4290 9.635520 TTCGGTTGTTTTAATTTTGTCAAACTA 57.364 25.926 0.00 0.00 31.59 2.24
4070 4291 8.535690 TTCGGTTGTTTTAATTTTGTCAAACT 57.464 26.923 0.00 0.00 31.59 2.66
4071 4292 7.900864 CCTTCGGTTGTTTTAATTTTGTCAAAC 59.099 33.333 0.00 0.00 0.00 2.93
4072 4293 7.603024 ACCTTCGGTTGTTTTAATTTTGTCAAA 59.397 29.630 0.00 0.00 27.29 2.69
4073 4294 7.097834 ACCTTCGGTTGTTTTAATTTTGTCAA 58.902 30.769 0.00 0.00 27.29 3.18
4074 4295 6.631962 ACCTTCGGTTGTTTTAATTTTGTCA 58.368 32.000 0.00 0.00 27.29 3.58
4075 4296 7.916977 AGTACCTTCGGTTGTTTTAATTTTGTC 59.083 33.333 0.00 0.00 37.09 3.18
4076 4297 7.774134 AGTACCTTCGGTTGTTTTAATTTTGT 58.226 30.769 0.00 0.00 37.09 2.83
4077 4298 9.389570 CTAGTACCTTCGGTTGTTTTAATTTTG 57.610 33.333 0.00 0.00 37.09 2.44
4078 4299 9.341078 TCTAGTACCTTCGGTTGTTTTAATTTT 57.659 29.630 0.00 0.00 37.09 1.82
4079 4300 8.907222 TCTAGTACCTTCGGTTGTTTTAATTT 57.093 30.769 0.00 0.00 37.09 1.82
4080 4301 7.605309 CCTCTAGTACCTTCGGTTGTTTTAATT 59.395 37.037 0.00 0.00 37.09 1.40
4081 4302 7.038799 TCCTCTAGTACCTTCGGTTGTTTTAAT 60.039 37.037 0.00 0.00 37.09 1.40
4082 4303 6.267471 TCCTCTAGTACCTTCGGTTGTTTTAA 59.733 38.462 0.00 0.00 37.09 1.52
4083 4304 5.774690 TCCTCTAGTACCTTCGGTTGTTTTA 59.225 40.000 0.00 0.00 37.09 1.52
4084 4305 4.590222 TCCTCTAGTACCTTCGGTTGTTTT 59.410 41.667 0.00 0.00 37.09 2.43
4085 4306 4.021632 GTCCTCTAGTACCTTCGGTTGTTT 60.022 45.833 0.00 0.00 37.09 2.83
4086 4307 3.509184 GTCCTCTAGTACCTTCGGTTGTT 59.491 47.826 0.00 0.00 37.09 2.83
4087 4308 3.087781 GTCCTCTAGTACCTTCGGTTGT 58.912 50.000 0.00 0.00 37.09 3.32
4088 4309 2.426381 GGTCCTCTAGTACCTTCGGTTG 59.574 54.545 0.00 0.00 37.09 3.77
4089 4310 2.042162 TGGTCCTCTAGTACCTTCGGTT 59.958 50.000 11.27 0.00 37.09 4.44
4090 4311 1.637553 TGGTCCTCTAGTACCTTCGGT 59.362 52.381 11.27 0.00 40.16 4.69
4091 4312 2.431954 TGGTCCTCTAGTACCTTCGG 57.568 55.000 11.27 0.00 36.67 4.30
4092 4313 3.318557 GGATTGGTCCTCTAGTACCTTCG 59.681 52.174 11.27 0.00 41.60 3.79
4093 4314 4.287552 TGGATTGGTCCTCTAGTACCTTC 58.712 47.826 11.27 8.70 45.32 3.46
4094 4315 4.348020 TGGATTGGTCCTCTAGTACCTT 57.652 45.455 11.27 2.20 45.32 3.50
4095 4316 4.348020 TTGGATTGGTCCTCTAGTACCT 57.652 45.455 11.27 0.00 45.32 3.08
4096 4317 5.130477 TGATTTGGATTGGTCCTCTAGTACC 59.870 44.000 5.15 5.15 45.32 3.34
4097 4318 6.235231 TGATTTGGATTGGTCCTCTAGTAC 57.765 41.667 0.00 0.00 45.32 2.73
4098 4319 6.615316 TGATGATTTGGATTGGTCCTCTAGTA 59.385 38.462 0.00 0.00 45.32 1.82
4099 4320 5.429762 TGATGATTTGGATTGGTCCTCTAGT 59.570 40.000 0.00 0.00 45.32 2.57
4100 4321 5.933617 TGATGATTTGGATTGGTCCTCTAG 58.066 41.667 0.00 0.00 45.32 2.43
4101 4322 5.974156 TGATGATTTGGATTGGTCCTCTA 57.026 39.130 0.00 0.00 45.32 2.43
4102 4323 4.868172 TGATGATTTGGATTGGTCCTCT 57.132 40.909 0.00 0.00 45.32 3.69
4103 4324 4.522022 GGATGATGATTTGGATTGGTCCTC 59.478 45.833 0.00 0.00 45.32 3.71
4104 4325 4.079038 TGGATGATGATTTGGATTGGTCCT 60.079 41.667 0.00 0.00 45.32 3.85
4105 4326 4.217510 TGGATGATGATTTGGATTGGTCC 58.782 43.478 0.00 0.00 45.31 4.46
4106 4327 5.773680 AGATGGATGATGATTTGGATTGGTC 59.226 40.000 0.00 0.00 0.00 4.02
4107 4328 5.712752 AGATGGATGATGATTTGGATTGGT 58.287 37.500 0.00 0.00 0.00 3.67
4108 4329 6.665992 AAGATGGATGATGATTTGGATTGG 57.334 37.500 0.00 0.00 0.00 3.16
4109 4330 7.946655 CAAAGATGGATGATGATTTGGATTG 57.053 36.000 0.00 0.00 0.00 2.67
4126 4347 0.680280 AGAGCCAGCAGCCAAAGATG 60.680 55.000 0.00 0.00 45.47 2.90
4127 4348 0.680280 CAGAGCCAGCAGCCAAAGAT 60.680 55.000 0.00 0.00 45.47 2.40
4128 4349 1.303074 CAGAGCCAGCAGCCAAAGA 60.303 57.895 0.00 0.00 45.47 2.52
4129 4350 2.341101 CCAGAGCCAGCAGCCAAAG 61.341 63.158 0.00 0.00 45.47 2.77
4130 4351 2.282674 CCAGAGCCAGCAGCCAAA 60.283 61.111 0.00 0.00 45.47 3.28
4131 4352 4.355720 CCCAGAGCCAGCAGCCAA 62.356 66.667 0.00 0.00 45.47 4.52
4135 4356 4.421515 CCCACCCAGAGCCAGCAG 62.422 72.222 0.00 0.00 0.00 4.24
4136 4357 3.863114 TACCCACCCAGAGCCAGCA 62.863 63.158 0.00 0.00 0.00 4.41
4137 4358 3.009115 TACCCACCCAGAGCCAGC 61.009 66.667 0.00 0.00 0.00 4.85
4138 4359 1.274703 ATGTACCCACCCAGAGCCAG 61.275 60.000 0.00 0.00 0.00 4.85
4139 4360 0.844661 AATGTACCCACCCAGAGCCA 60.845 55.000 0.00 0.00 0.00 4.75
4140 4361 1.134189 GTAATGTACCCACCCAGAGCC 60.134 57.143 0.00 0.00 0.00 4.70
4141 4362 1.557832 TGTAATGTACCCACCCAGAGC 59.442 52.381 0.00 0.00 0.00 4.09
4142 4363 3.992943 TTGTAATGTACCCACCCAGAG 57.007 47.619 0.00 0.00 0.00 3.35
4143 4364 4.141228 TGTTTTGTAATGTACCCACCCAGA 60.141 41.667 0.00 0.00 0.00 3.86
4144 4365 4.145807 TGTTTTGTAATGTACCCACCCAG 58.854 43.478 0.00 0.00 0.00 4.45
4145 4366 4.145807 CTGTTTTGTAATGTACCCACCCA 58.854 43.478 0.00 0.00 0.00 4.51
4146 4367 4.146564 ACTGTTTTGTAATGTACCCACCC 58.853 43.478 0.00 0.00 0.00 4.61
4147 4368 6.880942 TTACTGTTTTGTAATGTACCCACC 57.119 37.500 0.00 0.00 0.00 4.61
4148 4369 8.407832 AGTTTTACTGTTTTGTAATGTACCCAC 58.592 33.333 0.00 0.00 33.16 4.61
4149 4370 8.522542 AGTTTTACTGTTTTGTAATGTACCCA 57.477 30.769 0.00 0.00 33.16 4.51
4154 4375 8.688151 TGGCTAAGTTTTACTGTTTTGTAATGT 58.312 29.630 0.00 0.00 33.16 2.71
4155 4376 8.964150 GTGGCTAAGTTTTACTGTTTTGTAATG 58.036 33.333 0.00 0.00 33.16 1.90
4156 4377 8.139350 GGTGGCTAAGTTTTACTGTTTTGTAAT 58.861 33.333 0.00 0.00 33.16 1.89
4157 4378 7.339976 AGGTGGCTAAGTTTTACTGTTTTGTAA 59.660 33.333 0.00 0.00 0.00 2.41
4158 4379 6.829811 AGGTGGCTAAGTTTTACTGTTTTGTA 59.170 34.615 0.00 0.00 0.00 2.41
4159 4380 5.655090 AGGTGGCTAAGTTTTACTGTTTTGT 59.345 36.000 0.00 0.00 0.00 2.83
4160 4381 6.144078 AGGTGGCTAAGTTTTACTGTTTTG 57.856 37.500 0.00 0.00 0.00 2.44
4161 4382 7.523216 GCATAGGTGGCTAAGTTTTACTGTTTT 60.523 37.037 0.00 0.00 0.00 2.43
4162 4383 6.072119 GCATAGGTGGCTAAGTTTTACTGTTT 60.072 38.462 0.00 0.00 0.00 2.83
4163 4384 5.414765 GCATAGGTGGCTAAGTTTTACTGTT 59.585 40.000 0.00 0.00 0.00 3.16
4164 4385 4.941873 GCATAGGTGGCTAAGTTTTACTGT 59.058 41.667 0.00 0.00 0.00 3.55
4165 4386 4.335594 GGCATAGGTGGCTAAGTTTTACTG 59.664 45.833 0.00 0.00 46.64 2.74
4166 4387 4.524053 GGCATAGGTGGCTAAGTTTTACT 58.476 43.478 0.00 0.00 46.64 2.24
4167 4388 4.895224 GGCATAGGTGGCTAAGTTTTAC 57.105 45.455 0.00 0.00 46.64 2.01
4178 4399 2.867109 CTATGAAGGGGCATAGGTGG 57.133 55.000 0.00 0.00 42.46 4.61
4183 4404 5.376625 GTCAAATCACTATGAAGGGGCATA 58.623 41.667 0.00 0.00 0.00 3.14
4184 4405 4.210331 GTCAAATCACTATGAAGGGGCAT 58.790 43.478 0.00 0.00 0.00 4.40
4185 4406 3.620488 GTCAAATCACTATGAAGGGGCA 58.380 45.455 0.00 0.00 0.00 5.36
4186 4407 2.614057 CGTCAAATCACTATGAAGGGGC 59.386 50.000 0.00 0.00 0.00 5.80
4187 4408 3.873910 ACGTCAAATCACTATGAAGGGG 58.126 45.455 0.00 0.00 30.65 4.79
4188 4409 5.178797 AGAACGTCAAATCACTATGAAGGG 58.821 41.667 0.00 0.00 30.65 3.95
4189 4410 5.869344 TGAGAACGTCAAATCACTATGAAGG 59.131 40.000 0.00 0.00 29.64 3.46
4190 4411 6.951256 TGAGAACGTCAAATCACTATGAAG 57.049 37.500 0.00 0.00 29.64 3.02
4202 4423 3.744238 TCTGATGGTTGAGAACGTCAA 57.256 42.857 0.00 0.00 43.26 3.18
4203 4424 3.673323 CGATCTGATGGTTGAGAACGTCA 60.673 47.826 0.00 0.00 31.84 4.35
4204 4425 2.854777 CGATCTGATGGTTGAGAACGTC 59.145 50.000 0.00 0.00 31.84 4.34
4205 4426 2.881074 CGATCTGATGGTTGAGAACGT 58.119 47.619 0.00 0.00 31.84 3.99
4206 4427 1.590238 GCGATCTGATGGTTGAGAACG 59.410 52.381 0.00 0.00 37.50 3.95
4207 4428 2.898705 AGCGATCTGATGGTTGAGAAC 58.101 47.619 0.00 0.00 0.00 3.01
4208 4429 4.081697 TGTTAGCGATCTGATGGTTGAGAA 60.082 41.667 0.00 0.00 0.00 2.87
4209 4430 3.447229 TGTTAGCGATCTGATGGTTGAGA 59.553 43.478 0.00 0.00 0.00 3.27
4210 4431 3.553511 GTGTTAGCGATCTGATGGTTGAG 59.446 47.826 0.00 0.00 0.00 3.02
4211 4432 3.056179 TGTGTTAGCGATCTGATGGTTGA 60.056 43.478 0.00 0.00 0.00 3.18
4212 4433 3.261580 TGTGTTAGCGATCTGATGGTTG 58.738 45.455 0.00 0.00 0.00 3.77
4213 4434 3.610040 TGTGTTAGCGATCTGATGGTT 57.390 42.857 0.00 0.00 0.00 3.67
4214 4435 3.461061 CATGTGTTAGCGATCTGATGGT 58.539 45.455 0.00 0.00 0.00 3.55
4215 4436 2.222678 GCATGTGTTAGCGATCTGATGG 59.777 50.000 0.00 0.00 0.00 3.51
4216 4437 3.516681 GCATGTGTTAGCGATCTGATG 57.483 47.619 0.00 0.00 0.00 3.07
4225 4446 1.017177 TCCCGAACGCATGTGTTAGC 61.017 55.000 23.86 12.06 30.75 3.09
4226 4447 1.651987 ATCCCGAACGCATGTGTTAG 58.348 50.000 23.86 22.38 30.75 2.34
4227 4448 2.102070 AATCCCGAACGCATGTGTTA 57.898 45.000 23.86 9.58 30.75 2.41
4228 4449 2.102070 TAATCCCGAACGCATGTGTT 57.898 45.000 24.04 24.04 34.02 3.32
4229 4450 1.735571 GTTAATCCCGAACGCATGTGT 59.264 47.619 5.96 5.96 0.00 3.72
4230 4451 1.735018 TGTTAATCCCGAACGCATGTG 59.265 47.619 4.30 4.30 0.00 3.21
4231 4452 2.006888 CTGTTAATCCCGAACGCATGT 58.993 47.619 0.00 0.00 0.00 3.21
4232 4453 1.330521 CCTGTTAATCCCGAACGCATG 59.669 52.381 0.00 0.00 0.00 4.06
4233 4454 1.663695 CCTGTTAATCCCGAACGCAT 58.336 50.000 0.00 0.00 0.00 4.73
4234 4455 0.391927 CCCTGTTAATCCCGAACGCA 60.392 55.000 0.00 0.00 0.00 5.24
4235 4456 0.392060 ACCCTGTTAATCCCGAACGC 60.392 55.000 0.00 0.00 0.00 4.84
4236 4457 1.735571 CAACCCTGTTAATCCCGAACG 59.264 52.381 0.00 0.00 0.00 3.95
4237 4458 2.745821 GACAACCCTGTTAATCCCGAAC 59.254 50.000 0.00 0.00 35.30 3.95
4238 4459 2.290450 GGACAACCCTGTTAATCCCGAA 60.290 50.000 0.00 0.00 35.30 4.30
4239 4460 1.279846 GGACAACCCTGTTAATCCCGA 59.720 52.381 0.00 0.00 35.30 5.14
4240 4461 1.746470 GGACAACCCTGTTAATCCCG 58.254 55.000 0.00 0.00 35.30 5.14
4252 4473 4.559643 CGTAAAATTATTTGCGGGACAACC 59.440 41.667 4.26 0.00 46.57 3.77
4253 4474 5.674215 CGTAAAATTATTTGCGGGACAAC 57.326 39.130 4.26 0.00 46.57 3.32
4269 4490 8.389603 CGGAACAGGTAAATAATTAGCGTAAAA 58.610 33.333 0.00 0.00 42.86 1.52
4270 4491 7.011295 CCGGAACAGGTAAATAATTAGCGTAAA 59.989 37.037 0.00 0.00 42.86 2.01
4271 4492 6.479660 CCGGAACAGGTAAATAATTAGCGTAA 59.520 38.462 0.00 0.00 42.86 3.18
4272 4493 5.984926 CCGGAACAGGTAAATAATTAGCGTA 59.015 40.000 0.00 0.00 42.86 4.42
4273 4494 4.812626 CCGGAACAGGTAAATAATTAGCGT 59.187 41.667 0.00 0.00 42.86 5.07
4274 4495 4.319261 GCCGGAACAGGTAAATAATTAGCG 60.319 45.833 5.05 0.00 42.86 4.26
4275 4496 4.023450 GGCCGGAACAGGTAAATAATTAGC 60.023 45.833 5.05 0.00 39.31 3.09
4276 4497 5.238650 CAGGCCGGAACAGGTAAATAATTAG 59.761 44.000 5.05 0.00 0.00 1.73
4277 4498 5.127491 CAGGCCGGAACAGGTAAATAATTA 58.873 41.667 5.05 0.00 0.00 1.40
4278 4499 3.951680 CAGGCCGGAACAGGTAAATAATT 59.048 43.478 5.05 0.00 0.00 1.40
4279 4500 3.551846 CAGGCCGGAACAGGTAAATAAT 58.448 45.455 5.05 0.00 0.00 1.28
4280 4501 2.356330 CCAGGCCGGAACAGGTAAATAA 60.356 50.000 5.05 0.00 36.56 1.40
4281 4502 1.210967 CCAGGCCGGAACAGGTAAATA 59.789 52.381 5.05 0.00 36.56 1.40
4282 4503 0.034477 CCAGGCCGGAACAGGTAAAT 60.034 55.000 5.05 0.00 36.56 1.40
4283 4504 1.377229 CCAGGCCGGAACAGGTAAA 59.623 57.895 5.05 0.00 36.56 2.01
4284 4505 3.074281 CCAGGCCGGAACAGGTAA 58.926 61.111 5.05 0.00 36.56 2.85
4285 4506 3.712907 GCCAGGCCGGAACAGGTA 61.713 66.667 16.53 0.00 36.56 3.08
4305 4526 2.119029 GGGTAATGTTGCCCCGAGC 61.119 63.158 7.61 0.00 46.25 5.03
4306 4527 4.235731 GGGTAATGTTGCCCCGAG 57.764 61.111 7.61 0.00 46.25 4.63
4311 4532 2.058001 GGCCTGGGGTAATGTTGCC 61.058 63.158 0.00 0.00 0.00 4.52
4312 4533 2.414785 CGGCCTGGGGTAATGTTGC 61.415 63.158 0.00 0.00 0.00 4.17
4313 4534 2.414785 GCGGCCTGGGGTAATGTTG 61.415 63.158 0.00 0.00 0.00 3.33
4314 4535 2.044352 GCGGCCTGGGGTAATGTT 60.044 61.111 0.00 0.00 0.00 2.71
4315 4536 3.015145 AGCGGCCTGGGGTAATGT 61.015 61.111 0.00 0.00 0.00 2.71
4316 4537 2.516930 CAGCGGCCTGGGGTAATG 60.517 66.667 0.00 0.00 35.38 1.90
4317 4538 4.506255 GCAGCGGCCTGGGGTAAT 62.506 66.667 0.00 0.00 39.54 1.89
4324 4545 4.415332 CAGCAAAGCAGCGGCCTG 62.415 66.667 4.82 4.60 42.56 4.85
4325 4546 4.648626 TCAGCAAAGCAGCGGCCT 62.649 61.111 4.82 0.00 42.56 5.19
4326 4547 2.496828 ATTTCAGCAAAGCAGCGGCC 62.497 55.000 4.82 0.00 42.56 6.13
4327 4548 1.074872 GATTTCAGCAAAGCAGCGGC 61.075 55.000 0.00 0.00 40.15 6.53
4328 4549 0.241749 TGATTTCAGCAAAGCAGCGG 59.758 50.000 0.00 0.00 32.91 5.52
4329 4550 1.068748 AGTGATTTCAGCAAAGCAGCG 60.069 47.619 0.00 0.00 38.57 5.18
4330 4551 2.719426 AGTGATTTCAGCAAAGCAGC 57.281 45.000 0.00 0.00 38.57 5.25
4331 4552 7.487189 CCTTAATTAGTGATTTCAGCAAAGCAG 59.513 37.037 0.00 0.00 38.57 4.24
4332 4553 7.176515 TCCTTAATTAGTGATTTCAGCAAAGCA 59.823 33.333 0.00 0.00 35.52 3.91
4333 4554 7.538575 TCCTTAATTAGTGATTTCAGCAAAGC 58.461 34.615 0.00 0.00 0.00 3.51
4334 4555 8.734386 ACTCCTTAATTAGTGATTTCAGCAAAG 58.266 33.333 0.00 0.00 0.00 2.77
4335 4556 8.635765 ACTCCTTAATTAGTGATTTCAGCAAA 57.364 30.769 0.00 0.00 0.00 3.68
4336 4557 9.162764 GTACTCCTTAATTAGTGATTTCAGCAA 57.837 33.333 0.00 0.00 0.00 3.91
4337 4558 8.540388 AGTACTCCTTAATTAGTGATTTCAGCA 58.460 33.333 0.00 0.00 0.00 4.41
4338 4559 8.950208 AGTACTCCTTAATTAGTGATTTCAGC 57.050 34.615 0.00 0.00 0.00 4.26
4339 4560 9.239002 CGAGTACTCCTTAATTAGTGATTTCAG 57.761 37.037 17.23 0.00 0.00 3.02
4340 4561 8.746530 ACGAGTACTCCTTAATTAGTGATTTCA 58.253 33.333 17.23 0.00 0.00 2.69
4341 4562 9.583765 AACGAGTACTCCTTAATTAGTGATTTC 57.416 33.333 17.23 0.00 0.00 2.17
4342 4563 9.367444 CAACGAGTACTCCTTAATTAGTGATTT 57.633 33.333 17.23 0.00 0.00 2.17
4343 4564 7.491696 GCAACGAGTACTCCTTAATTAGTGATT 59.508 37.037 17.23 0.00 0.00 2.57
4344 4565 6.979238 GCAACGAGTACTCCTTAATTAGTGAT 59.021 38.462 17.23 0.00 0.00 3.06
4345 4566 6.071784 TGCAACGAGTACTCCTTAATTAGTGA 60.072 38.462 17.23 0.00 0.00 3.41
4346 4567 6.097356 TGCAACGAGTACTCCTTAATTAGTG 58.903 40.000 17.23 1.71 0.00 2.74
4347 4568 6.276832 TGCAACGAGTACTCCTTAATTAGT 57.723 37.500 17.23 3.77 0.00 2.24
4348 4569 7.544566 TCTTTGCAACGAGTACTCCTTAATTAG 59.455 37.037 17.23 7.81 0.00 1.73
4349 4570 7.380536 TCTTTGCAACGAGTACTCCTTAATTA 58.619 34.615 17.23 0.00 0.00 1.40
4350 4571 6.228258 TCTTTGCAACGAGTACTCCTTAATT 58.772 36.000 17.23 1.76 0.00 1.40
4351 4572 5.790593 TCTTTGCAACGAGTACTCCTTAAT 58.209 37.500 17.23 0.00 0.00 1.40
4352 4573 5.204409 TCTTTGCAACGAGTACTCCTTAA 57.796 39.130 17.23 2.08 0.00 1.85
4353 4574 4.859304 TCTTTGCAACGAGTACTCCTTA 57.141 40.909 17.23 0.00 0.00 2.69
4354 4575 3.746045 TCTTTGCAACGAGTACTCCTT 57.254 42.857 17.23 9.18 0.00 3.36
4355 4576 3.181469 TGTTCTTTGCAACGAGTACTCCT 60.181 43.478 17.23 2.73 0.00 3.69
4356 4577 3.059800 GTGTTCTTTGCAACGAGTACTCC 60.060 47.826 17.23 3.69 0.00 3.85
4357 4578 3.802685 AGTGTTCTTTGCAACGAGTACTC 59.197 43.478 13.18 13.18 0.00 2.59
4358 4579 3.793559 AGTGTTCTTTGCAACGAGTACT 58.206 40.909 14.37 14.37 0.00 2.73
4359 4580 3.059800 GGAGTGTTCTTTGCAACGAGTAC 60.060 47.826 0.00 6.11 0.00 2.73
4360 4581 3.128349 GGAGTGTTCTTTGCAACGAGTA 58.872 45.455 0.00 0.00 0.00 2.59
4361 4582 1.940613 GGAGTGTTCTTTGCAACGAGT 59.059 47.619 0.00 0.00 0.00 4.18
4362 4583 1.939934 TGGAGTGTTCTTTGCAACGAG 59.060 47.619 0.00 0.00 0.00 4.18
4363 4584 1.668751 GTGGAGTGTTCTTTGCAACGA 59.331 47.619 0.00 0.00 0.00 3.85
4364 4585 1.268539 GGTGGAGTGTTCTTTGCAACG 60.269 52.381 0.00 0.00 0.00 4.10
4365 4586 2.024414 AGGTGGAGTGTTCTTTGCAAC 58.976 47.619 0.00 0.00 0.00 4.17
4366 4587 2.435372 AGGTGGAGTGTTCTTTGCAA 57.565 45.000 0.00 0.00 0.00 4.08
4367 4588 2.092429 AGAAGGTGGAGTGTTCTTTGCA 60.092 45.455 0.00 0.00 0.00 4.08
4368 4589 2.550180 GAGAAGGTGGAGTGTTCTTTGC 59.450 50.000 0.00 0.00 30.55 3.68
4369 4590 3.808728 TGAGAAGGTGGAGTGTTCTTTG 58.191 45.455 0.00 0.00 30.55 2.77
4370 4591 3.181450 CCTGAGAAGGTGGAGTGTTCTTT 60.181 47.826 0.00 0.00 30.55 2.52
4371 4592 2.370189 CCTGAGAAGGTGGAGTGTTCTT 59.630 50.000 0.00 0.00 30.55 2.52
4372 4593 1.974236 CCTGAGAAGGTGGAGTGTTCT 59.026 52.381 0.00 0.00 33.14 3.01
4373 4594 1.694696 ACCTGAGAAGGTGGAGTGTTC 59.305 52.381 0.00 0.00 41.33 3.18
4374 4595 1.694696 GACCTGAGAAGGTGGAGTGTT 59.305 52.381 1.25 0.00 43.24 3.32
4375 4596 1.343069 GACCTGAGAAGGTGGAGTGT 58.657 55.000 1.25 0.00 43.24 3.55
4376 4597 1.001406 GTGACCTGAGAAGGTGGAGTG 59.999 57.143 1.25 0.00 43.24 3.51
4377 4598 1.343069 GTGACCTGAGAAGGTGGAGT 58.657 55.000 1.25 0.00 43.24 3.85
4378 4599 0.244994 CGTGACCTGAGAAGGTGGAG 59.755 60.000 1.25 0.00 43.24 3.86
4379 4600 0.178973 TCGTGACCTGAGAAGGTGGA 60.179 55.000 1.25 0.00 43.24 4.02
4380 4601 0.038159 GTCGTGACCTGAGAAGGTGG 60.038 60.000 1.25 0.00 43.24 4.61
4381 4602 0.673985 TGTCGTGACCTGAGAAGGTG 59.326 55.000 1.25 0.00 43.24 4.00
4382 4603 1.341531 CTTGTCGTGACCTGAGAAGGT 59.658 52.381 0.00 0.00 46.40 3.50
4383 4604 1.341531 ACTTGTCGTGACCTGAGAAGG 59.658 52.381 5.12 0.00 40.10 3.46
4384 4605 2.802787 ACTTGTCGTGACCTGAGAAG 57.197 50.000 0.00 0.00 41.18 2.85
4385 4606 2.030185 GCTACTTGTCGTGACCTGAGAA 60.030 50.000 0.00 0.00 0.00 2.87
4386 4607 1.540267 GCTACTTGTCGTGACCTGAGA 59.460 52.381 0.00 0.00 0.00 3.27
4387 4608 1.729472 CGCTACTTGTCGTGACCTGAG 60.729 57.143 0.00 0.00 0.00 3.35
4388 4609 0.240145 CGCTACTTGTCGTGACCTGA 59.760 55.000 0.00 0.00 0.00 3.86
4389 4610 1.344942 GCGCTACTTGTCGTGACCTG 61.345 60.000 0.00 0.00 0.00 4.00
4390 4611 1.080705 GCGCTACTTGTCGTGACCT 60.081 57.895 0.00 0.00 0.00 3.85
4391 4612 1.372499 TGCGCTACTTGTCGTGACC 60.372 57.895 9.73 0.00 0.00 4.02
4392 4613 0.937699 TGTGCGCTACTTGTCGTGAC 60.938 55.000 9.73 0.00 0.00 3.67
4393 4614 0.038618 ATGTGCGCTACTTGTCGTGA 60.039 50.000 9.73 0.00 0.00 4.35
4394 4615 0.093535 CATGTGCGCTACTTGTCGTG 59.906 55.000 9.73 0.00 31.66 4.35
4395 4616 1.626654 GCATGTGCGCTACTTGTCGT 61.627 55.000 9.73 0.00 36.94 4.34
4396 4617 1.059369 GCATGTGCGCTACTTGTCG 59.941 57.895 9.73 0.00 36.94 4.35
4397 4618 0.095935 CTGCATGTGCGCTACTTGTC 59.904 55.000 9.73 10.06 45.83 3.18
4398 4619 1.915614 GCTGCATGTGCGCTACTTGT 61.916 55.000 9.73 0.00 45.83 3.16
4399 4620 1.226211 GCTGCATGTGCGCTACTTG 60.226 57.895 9.73 14.07 45.83 3.16
4400 4621 2.743752 CGCTGCATGTGCGCTACTT 61.744 57.895 18.73 0.56 46.72 2.24
4401 4622 3.190849 CGCTGCATGTGCGCTACT 61.191 61.111 18.73 0.00 46.72 2.57
4420 4641 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
4421 4642 2.260869 CCCAGGTTGCGACAAGTGG 61.261 63.158 6.39 9.17 0.00 4.00
4422 4643 1.227823 TCCCAGGTTGCGACAAGTG 60.228 57.895 6.39 0.00 0.00 3.16
4423 4644 1.071471 CTCCCAGGTTGCGACAAGT 59.929 57.895 6.39 0.00 0.00 3.16
4424 4645 0.535102 AACTCCCAGGTTGCGACAAG 60.535 55.000 6.39 0.00 0.00 3.16
4425 4646 0.106918 AAACTCCCAGGTTGCGACAA 60.107 50.000 6.39 0.00 0.00 3.18
4426 4647 0.106918 AAAACTCCCAGGTTGCGACA 60.107 50.000 6.39 0.00 0.00 4.35
4427 4648 0.591659 GAAAACTCCCAGGTTGCGAC 59.408 55.000 0.00 0.00 0.00 5.19
4428 4649 0.536460 GGAAAACTCCCAGGTTGCGA 60.536 55.000 0.00 0.00 0.00 5.10
4429 4650 1.956802 GGAAAACTCCCAGGTTGCG 59.043 57.895 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.