Multiple sequence alignment - TraesCS2D01G376300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G376300 chr2D 100.000 3437 0 0 1 3437 480572814 480576250 0.000000e+00 6348.0
1 TraesCS2D01G376300 chr2D 96.266 241 6 3 1 240 539831313 539831075 3.220000e-105 392.0
2 TraesCS2D01G376300 chr2D 97.222 36 1 0 435 470 641575704 641575739 1.030000e-05 62.1
3 TraesCS2D01G376300 chr2A 91.407 1478 47 24 768 2204 623152092 623153530 0.000000e+00 1953.0
4 TraesCS2D01G376300 chr2A 85.144 801 46 36 2672 3429 623153796 623154566 0.000000e+00 752.0
5 TraesCS2D01G376300 chr2A 92.857 56 1 2 2567 2622 623153745 623153797 1.020000e-10 78.7
6 TraesCS2D01G376300 chr2A 100.000 31 0 0 752 782 623152054 623152084 1.330000e-04 58.4
7 TraesCS2D01G376300 chr2B 89.732 1383 63 35 768 2113 563678721 563680061 0.000000e+00 1694.0
8 TraesCS2D01G376300 chr2B 90.805 348 21 4 3088 3432 563681761 563682100 4.040000e-124 455.0
9 TraesCS2D01G376300 chr2B 86.122 245 15 11 2692 2919 563680469 563680711 2.650000e-61 246.0
10 TraesCS2D01G376300 chr2B 97.143 35 0 1 2275 2308 93043317 93043351 1.330000e-04 58.4
11 TraesCS2D01G376300 chr7D 98.261 230 4 0 1 230 206249176 206248947 1.490000e-108 403.0
12 TraesCS2D01G376300 chr7D 97.222 36 1 0 435 470 126464629 126464664 1.030000e-05 62.1
13 TraesCS2D01G376300 chr7D 100.000 28 0 0 312 339 494964075 494964048 6.000000e-03 52.8
14 TraesCS2D01G376300 chrUn 97.826 230 5 0 1 230 362563838 362563609 6.910000e-107 398.0
15 TraesCS2D01G376300 chrUn 97.826 230 5 0 1 230 362565881 362565652 6.910000e-107 398.0
16 TraesCS2D01G376300 chr3D 95.902 244 7 3 1 242 53448742 53448500 3.220000e-105 392.0
17 TraesCS2D01G376300 chr3D 98.643 221 3 0 1 221 486713152 486713372 3.220000e-105 392.0
18 TraesCS2D01G376300 chr1D 95.885 243 8 2 1 243 294970166 294970406 3.220000e-105 392.0
19 TraesCS2D01G376300 chr5D 95.102 245 10 2 1 244 84621940 84621697 5.380000e-103 385.0
20 TraesCS2D01G376300 chr5D 97.222 36 1 0 435 470 460450615 460450650 1.030000e-05 62.1
21 TraesCS2D01G376300 chr4D 95.455 242 7 4 1 240 16867643 16867882 1.940000e-102 383.0
22 TraesCS2D01G376300 chr4D 93.617 47 1 2 2262 2307 30554822 30554777 6.150000e-08 69.4
23 TraesCS2D01G376300 chr6B 83.660 306 42 6 222 519 557454643 557454948 7.260000e-72 281.0
24 TraesCS2D01G376300 chr6B 75.833 240 38 14 1361 1593 466967419 466967645 1.690000e-18 104.0
25 TraesCS2D01G376300 chr7B 84.942 259 25 7 222 466 203278522 203278264 2.050000e-62 250.0
26 TraesCS2D01G376300 chr7B 81.818 264 35 6 222 472 438886758 438886495 3.480000e-50 209.0
27 TraesCS2D01G376300 chr4B 90.000 160 13 2 222 378 614662588 614662429 1.620000e-48 204.0
28 TraesCS2D01G376300 chr4B 93.617 47 1 2 2262 2307 43789624 43789579 6.150000e-08 69.4
29 TraesCS2D01G376300 chr7A 76.302 384 68 13 222 586 690921498 690921119 2.110000e-42 183.0
30 TraesCS2D01G376300 chr1A 76.587 252 53 4 222 468 563118069 563117819 2.150000e-27 134.0
31 TraesCS2D01G376300 chr1A 97.222 36 1 0 435 470 523005053 523005018 1.030000e-05 62.1
32 TraesCS2D01G376300 chr1A 97.222 36 1 0 435 470 565466404 565466369 1.030000e-05 62.1
33 TraesCS2D01G376300 chr5A 97.222 36 1 0 435 470 646558530 646558565 1.030000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G376300 chr2D 480572814 480576250 3436 False 6348.000000 6348 100.000000 1 3437 1 chr2D.!!$F1 3436
1 TraesCS2D01G376300 chr2A 623152054 623154566 2512 False 710.525000 1953 92.352000 752 3429 4 chr2A.!!$F1 2677
2 TraesCS2D01G376300 chr2B 563678721 563682100 3379 False 798.333333 1694 88.886333 768 3432 3 chr2B.!!$F2 2664
3 TraesCS2D01G376300 chrUn 362563609 362565881 2272 True 398.000000 398 97.826000 1 230 2 chrUn.!!$R1 229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 553 0.036388 GCCTTCACCAACTCCATCGA 60.036 55.000 0.00 0.0 0.00 3.59 F
815 1022 0.036483 TGTGTGCGCTACCATCATGT 60.036 50.000 9.73 0.0 0.00 3.21 F
1687 2921 1.005275 CATCGGCATGGCTCGATCT 60.005 57.895 18.09 0.0 38.88 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 3034 0.172803 ATGTCTTCGCTACCACGGTC 59.827 55.0 0.00 0.0 0.00 4.79 R
2253 3765 0.252479 AAGCGAGGGAGTAGACGAGA 59.748 55.0 0.00 0.0 0.00 4.04 R
3072 5561 0.259065 TTGGCCACCCACAGTTACAA 59.741 50.0 3.88 0.0 41.97 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 168 2.549563 CCCTCTCGTTGCTATGCATCAT 60.550 50.000 0.19 0.00 38.76 2.45
223 224 3.337694 TTACTACGTTCCCCAACATGG 57.662 47.619 0.00 0.00 37.25 3.66
224 225 1.061546 ACTACGTTCCCCAACATGGT 58.938 50.000 0.00 0.00 35.17 3.55
230 231 1.124477 TTCCCCAACATGGTTTGCCC 61.124 55.000 0.00 0.00 35.17 5.36
231 232 1.536174 CCCCAACATGGTTTGCCCT 60.536 57.895 0.00 0.00 35.17 5.19
234 235 0.893270 CCAACATGGTTTGCCCTCGA 60.893 55.000 0.00 0.00 31.35 4.04
235 236 0.958091 CAACATGGTTTGCCCTCGAA 59.042 50.000 0.00 0.00 0.00 3.71
237 238 0.179004 ACATGGTTTGCCCTCGAACA 60.179 50.000 0.00 0.00 38.15 3.18
239 240 1.234615 ATGGTTTGCCCTCGAACACG 61.235 55.000 0.00 0.00 38.15 4.49
240 241 1.595929 GGTTTGCCCTCGAACACGA 60.596 57.895 0.00 0.00 38.15 4.35
247 248 4.966005 CTCGAACACGAGGAGCAA 57.034 55.556 11.09 0.00 46.33 3.91
248 249 2.730626 CTCGAACACGAGGAGCAAG 58.269 57.895 11.09 0.00 46.33 4.01
249 250 0.734253 CTCGAACACGAGGAGCAAGG 60.734 60.000 11.09 0.00 46.33 3.61
251 252 2.357517 AACACGAGGAGCAAGGCG 60.358 61.111 0.00 0.00 0.00 5.52
253 254 4.069232 CACGAGGAGCAAGGCGGA 62.069 66.667 0.00 0.00 0.00 5.54
255 256 2.279784 CGAGGAGCAAGGCGGATC 60.280 66.667 0.00 0.00 0.00 3.36
256 257 2.903357 GAGGAGCAAGGCGGATCA 59.097 61.111 0.00 0.00 0.00 2.92
257 258 1.227497 GAGGAGCAAGGCGGATCAG 60.227 63.158 0.00 0.00 0.00 2.90
260 261 4.087892 AGCAAGGCGGATCAGCGT 62.088 61.111 11.80 9.55 38.18 5.07
261 262 3.869272 GCAAGGCGGATCAGCGTG 61.869 66.667 13.69 13.54 38.18 5.34
262 263 3.869272 CAAGGCGGATCAGCGTGC 61.869 66.667 13.69 0.00 38.18 5.34
263 264 4.393155 AAGGCGGATCAGCGTGCA 62.393 61.111 13.69 0.00 38.18 4.57
264 265 4.827087 AGGCGGATCAGCGTGCAG 62.827 66.667 12.26 0.00 38.18 4.41
276 277 3.649986 GTGCAGCACCACCACGTC 61.650 66.667 15.27 0.00 0.00 4.34
277 278 4.168291 TGCAGCACCACCACGTCA 62.168 61.111 0.00 0.00 0.00 4.35
278 279 2.899838 GCAGCACCACCACGTCAA 60.900 61.111 0.00 0.00 0.00 3.18
279 280 3.022287 CAGCACCACCACGTCAAC 58.978 61.111 0.00 0.00 0.00 3.18
280 281 2.203153 AGCACCACCACGTCAACC 60.203 61.111 0.00 0.00 0.00 3.77
282 283 2.593436 CACCACCACGTCAACCCC 60.593 66.667 0.00 0.00 0.00 4.95
283 284 3.881104 ACCACCACGTCAACCCCC 61.881 66.667 0.00 0.00 0.00 5.40
300 301 4.078516 CCACCTTCCCCCGTCGTC 62.079 72.222 0.00 0.00 0.00 4.20
301 302 3.307906 CACCTTCCCCCGTCGTCA 61.308 66.667 0.00 0.00 0.00 4.35
302 303 2.524887 ACCTTCCCCCGTCGTCAA 60.525 61.111 0.00 0.00 0.00 3.18
324 509 4.851214 GAGGAGGAGGCCGAGGCT 62.851 72.222 14.33 0.02 42.48 4.58
334 519 3.854669 CCGAGGCTGCCTACCAGG 61.855 72.222 23.44 18.04 42.03 4.45
335 520 3.077556 CGAGGCTGCCTACCAGGT 61.078 66.667 23.44 0.00 42.03 4.00
336 521 2.586792 GAGGCTGCCTACCAGGTG 59.413 66.667 23.44 0.00 42.03 4.00
337 522 3.011517 AGGCTGCCTACCAGGTGG 61.012 66.667 21.98 0.00 42.03 4.61
360 545 3.056328 GCGGAGGCCTTCACCAAC 61.056 66.667 12.82 0.00 0.00 3.77
363 548 1.002011 GGAGGCCTTCACCAACTCC 60.002 63.158 6.77 0.00 40.72 3.85
364 549 1.761174 GAGGCCTTCACCAACTCCA 59.239 57.895 6.77 0.00 0.00 3.86
365 550 0.329596 GAGGCCTTCACCAACTCCAT 59.670 55.000 6.77 0.00 0.00 3.41
366 551 0.329596 AGGCCTTCACCAACTCCATC 59.670 55.000 0.00 0.00 0.00 3.51
368 553 0.036388 GCCTTCACCAACTCCATCGA 60.036 55.000 0.00 0.00 0.00 3.59
369 554 1.610624 GCCTTCACCAACTCCATCGAA 60.611 52.381 0.00 0.00 0.00 3.71
370 555 2.350522 CCTTCACCAACTCCATCGAAG 58.649 52.381 0.00 0.00 0.00 3.79
371 556 2.028112 CCTTCACCAACTCCATCGAAGA 60.028 50.000 0.00 0.00 45.75 2.87
372 557 3.257393 CTTCACCAACTCCATCGAAGAG 58.743 50.000 12.85 12.85 43.63 2.85
373 558 1.550524 TCACCAACTCCATCGAAGAGG 59.449 52.381 17.31 7.94 43.63 3.69
374 559 1.550524 CACCAACTCCATCGAAGAGGA 59.449 52.381 17.31 11.39 43.16 3.71
376 561 2.028020 ACCAACTCCATCGAAGAGGAAC 60.028 50.000 17.31 0.00 43.16 3.62
377 562 2.263077 CAACTCCATCGAAGAGGAACG 58.737 52.381 17.31 5.54 43.16 3.95
378 563 1.835494 ACTCCATCGAAGAGGAACGA 58.165 50.000 17.31 0.00 43.16 3.85
380 565 0.450583 TCCATCGAAGAGGAACGACG 59.549 55.000 2.50 0.00 43.16 5.12
381 566 0.525668 CCATCGAAGAGGAACGACGG 60.526 60.000 0.00 0.00 43.16 4.79
382 567 0.450583 CATCGAAGAGGAACGACGGA 59.549 55.000 0.00 0.00 43.16 4.69
383 568 1.135489 CATCGAAGAGGAACGACGGAA 60.135 52.381 0.00 0.00 43.16 4.30
384 569 0.520404 TCGAAGAGGAACGACGGAAG 59.480 55.000 0.00 0.00 33.62 3.46
400 585 0.100861 GAAGGCCGAAGTAGACGAGG 59.899 60.000 0.00 0.00 0.00 4.63
402 587 2.104530 GCCGAAGTAGACGAGGCC 59.895 66.667 0.00 0.00 41.81 5.19
403 588 2.707849 GCCGAAGTAGACGAGGCCA 61.708 63.158 5.01 0.00 41.81 5.36
405 590 1.139095 CGAAGTAGACGAGGCCACC 59.861 63.158 5.01 0.00 0.00 4.61
406 591 1.313812 CGAAGTAGACGAGGCCACCT 61.314 60.000 5.01 0.00 36.03 4.00
408 593 1.404748 GAAGTAGACGAGGCCACCTAC 59.595 57.143 5.01 10.37 31.76 3.18
410 595 0.682209 GTAGACGAGGCCACCTACCA 60.682 60.000 5.01 0.00 31.76 3.25
411 596 0.260816 TAGACGAGGCCACCTACCAT 59.739 55.000 5.01 0.00 31.76 3.55
412 597 1.144057 GACGAGGCCACCTACCATG 59.856 63.158 5.01 0.00 31.76 3.66
413 598 2.203070 CGAGGCCACCTACCATGC 60.203 66.667 5.01 0.00 31.76 4.06
414 599 2.203070 GAGGCCACCTACCATGCG 60.203 66.667 5.01 0.00 31.76 4.73
415 600 3.757248 GAGGCCACCTACCATGCGG 62.757 68.421 5.01 0.00 31.76 5.69
419 604 4.838152 CACCTACCATGCGGCGCT 62.838 66.667 33.26 15.39 34.57 5.92
441 626 4.747218 GAGGACACGACCCTCTCT 57.253 61.111 12.76 0.00 45.18 3.10
443 628 1.939769 GAGGACACGACCCTCTCTGC 61.940 65.000 12.76 0.00 45.18 4.26
444 629 2.179517 GACACGACCCTCTCTGCG 59.820 66.667 0.00 0.00 0.00 5.18
446 631 4.803426 CACGACCCTCTCTGCGGC 62.803 72.222 0.00 0.00 0.00 6.53
485 670 3.735029 GGCGACTCGACGACACCT 61.735 66.667 1.63 0.00 41.34 4.00
486 671 2.502080 GCGACTCGACGACACCTG 60.502 66.667 1.63 0.00 35.09 4.00
487 672 2.502080 CGACTCGACGACACCTGC 60.502 66.667 0.00 0.00 35.09 4.85
488 673 2.643272 GACTCGACGACACCTGCA 59.357 61.111 0.00 0.00 0.00 4.41
489 674 1.729838 GACTCGACGACACCTGCAC 60.730 63.158 0.00 0.00 0.00 4.57
490 675 2.430921 CTCGACGACACCTGCACC 60.431 66.667 0.00 0.00 0.00 5.01
491 676 3.916392 CTCGACGACACCTGCACCC 62.916 68.421 0.00 0.00 0.00 4.61
493 678 3.986006 GACGACACCTGCACCCGA 61.986 66.667 0.00 0.00 0.00 5.14
494 679 3.916392 GACGACACCTGCACCCGAG 62.916 68.421 0.00 0.00 0.00 4.63
508 693 4.585526 CGAGCCGGCCAAGCGATA 62.586 66.667 26.15 0.00 34.64 2.92
509 694 2.967615 GAGCCGGCCAAGCGATAC 60.968 66.667 26.15 0.00 34.64 2.24
510 695 4.891727 AGCCGGCCAAGCGATACG 62.892 66.667 26.15 0.00 34.64 3.06
512 697 3.261951 CCGGCCAAGCGATACGTG 61.262 66.667 2.24 0.00 0.00 4.49
513 698 2.508439 CGGCCAAGCGATACGTGT 60.508 61.111 2.24 0.00 0.00 4.49
514 699 2.798501 CGGCCAAGCGATACGTGTG 61.799 63.158 2.24 0.00 0.00 3.82
515 700 2.461110 GGCCAAGCGATACGTGTGG 61.461 63.158 0.00 0.00 36.50 4.17
516 701 1.447140 GCCAAGCGATACGTGTGGA 60.447 57.895 15.34 0.00 35.85 4.02
517 702 1.693083 GCCAAGCGATACGTGTGGAC 61.693 60.000 15.34 0.00 35.85 4.02
518 703 1.082117 CCAAGCGATACGTGTGGACC 61.082 60.000 0.00 0.00 35.85 4.46
519 704 1.153901 AAGCGATACGTGTGGACCG 60.154 57.895 0.00 0.00 0.00 4.79
520 705 1.588824 AAGCGATACGTGTGGACCGA 61.589 55.000 0.00 0.00 0.00 4.69
521 706 1.870901 GCGATACGTGTGGACCGAC 60.871 63.158 0.00 0.00 0.00 4.79
522 707 1.226491 CGATACGTGTGGACCGACC 60.226 63.158 0.00 0.00 39.54 4.79
538 723 2.930019 CCAGCTGTGGGAGTGGGA 60.930 66.667 13.81 0.00 40.67 4.37
539 724 2.528818 CCAGCTGTGGGAGTGGGAA 61.529 63.158 13.81 0.00 40.67 3.97
540 725 1.455849 CAGCTGTGGGAGTGGGAAA 59.544 57.895 5.25 0.00 0.00 3.13
541 726 0.607489 CAGCTGTGGGAGTGGGAAAG 60.607 60.000 5.25 0.00 0.00 2.62
542 727 1.973812 GCTGTGGGAGTGGGAAAGC 60.974 63.158 0.00 0.00 0.00 3.51
543 728 1.672356 CTGTGGGAGTGGGAAAGCG 60.672 63.158 0.00 0.00 0.00 4.68
544 729 2.397413 CTGTGGGAGTGGGAAAGCGT 62.397 60.000 0.00 0.00 0.00 5.07
545 730 1.671379 GTGGGAGTGGGAAAGCGTC 60.671 63.158 0.00 0.00 0.00 5.19
564 749 3.979497 CCCCCTCCCGTTTGGCTT 61.979 66.667 0.00 0.00 0.00 4.35
565 750 2.676471 CCCCTCCCGTTTGGCTTG 60.676 66.667 0.00 0.00 0.00 4.01
566 751 2.434331 CCCTCCCGTTTGGCTTGA 59.566 61.111 0.00 0.00 0.00 3.02
567 752 1.000896 CCCTCCCGTTTGGCTTGAT 60.001 57.895 0.00 0.00 0.00 2.57
568 753 1.315257 CCCTCCCGTTTGGCTTGATG 61.315 60.000 0.00 0.00 0.00 3.07
569 754 1.508088 CTCCCGTTTGGCTTGATGC 59.492 57.895 0.00 0.00 41.94 3.91
578 763 4.166011 GCTTGATGCCACGCCGAC 62.166 66.667 0.00 0.00 32.07 4.79
587 772 4.498520 CACGCCGACGCAGGAGAT 62.499 66.667 7.44 0.00 45.53 2.75
588 773 4.498520 ACGCCGACGCAGGAGATG 62.499 66.667 7.44 0.00 45.53 2.90
589 774 4.498520 CGCCGACGCAGGAGATGT 62.499 66.667 0.43 0.00 32.51 3.06
590 775 2.805546 GCCGACGCAGGAGATGTA 59.194 61.111 0.43 0.00 34.03 2.29
591 776 1.589196 GCCGACGCAGGAGATGTAC 60.589 63.158 0.43 0.00 34.03 2.90
592 777 1.065928 CCGACGCAGGAGATGTACC 59.934 63.158 0.00 0.00 0.00 3.34
593 778 1.384989 CCGACGCAGGAGATGTACCT 61.385 60.000 0.00 0.00 38.40 3.08
594 779 1.306148 CGACGCAGGAGATGTACCTA 58.694 55.000 0.00 0.00 35.84 3.08
595 780 1.264557 CGACGCAGGAGATGTACCTAG 59.735 57.143 0.00 0.00 35.84 3.02
596 781 2.573369 GACGCAGGAGATGTACCTAGA 58.427 52.381 0.00 0.00 35.84 2.43
597 782 2.550606 GACGCAGGAGATGTACCTAGAG 59.449 54.545 0.00 0.00 35.84 2.43
598 783 1.268352 CGCAGGAGATGTACCTAGAGC 59.732 57.143 0.00 0.00 35.84 4.09
599 784 1.268352 GCAGGAGATGTACCTAGAGCG 59.732 57.143 0.00 0.00 35.84 5.03
600 785 1.268352 CAGGAGATGTACCTAGAGCGC 59.732 57.143 0.00 0.00 35.84 5.92
601 786 1.133761 AGGAGATGTACCTAGAGCGCA 60.134 52.381 11.47 0.00 35.84 6.09
602 787 1.268352 GGAGATGTACCTAGAGCGCAG 59.732 57.143 11.47 0.00 0.00 5.18
627 812 4.399395 CAGGCTGGCGAAGGAGCA 62.399 66.667 6.61 0.00 36.90 4.26
628 813 3.406200 AGGCTGGCGAAGGAGCAT 61.406 61.111 0.00 0.00 36.90 3.79
629 814 3.207669 GGCTGGCGAAGGAGCATG 61.208 66.667 0.00 0.00 36.90 4.06
630 815 2.437359 GCTGGCGAAGGAGCATGT 60.437 61.111 0.00 0.00 39.27 3.21
631 816 2.758089 GCTGGCGAAGGAGCATGTG 61.758 63.158 0.00 0.00 39.27 3.21
632 817 1.376424 CTGGCGAAGGAGCATGTGT 60.376 57.895 0.00 0.00 39.27 3.72
633 818 0.108186 CTGGCGAAGGAGCATGTGTA 60.108 55.000 0.00 0.00 39.27 2.90
634 819 0.541392 TGGCGAAGGAGCATGTGTAT 59.459 50.000 0.00 0.00 39.27 2.29
635 820 1.760029 TGGCGAAGGAGCATGTGTATA 59.240 47.619 0.00 0.00 39.27 1.47
636 821 2.169561 TGGCGAAGGAGCATGTGTATAA 59.830 45.455 0.00 0.00 39.27 0.98
637 822 3.181455 TGGCGAAGGAGCATGTGTATAAT 60.181 43.478 0.00 0.00 39.27 1.28
638 823 3.815401 GGCGAAGGAGCATGTGTATAATT 59.185 43.478 0.00 0.00 39.27 1.40
639 824 4.275936 GGCGAAGGAGCATGTGTATAATTT 59.724 41.667 0.00 0.00 39.27 1.82
640 825 5.221048 GGCGAAGGAGCATGTGTATAATTTT 60.221 40.000 0.00 0.00 39.27 1.82
641 826 5.909610 GCGAAGGAGCATGTGTATAATTTTC 59.090 40.000 0.00 0.00 37.05 2.29
642 827 6.238484 GCGAAGGAGCATGTGTATAATTTTCT 60.238 38.462 0.00 0.00 37.05 2.52
643 828 7.679638 GCGAAGGAGCATGTGTATAATTTTCTT 60.680 37.037 0.00 0.00 37.05 2.52
644 829 8.184192 CGAAGGAGCATGTGTATAATTTTCTTT 58.816 33.333 0.00 0.00 0.00 2.52
645 830 9.860898 GAAGGAGCATGTGTATAATTTTCTTTT 57.139 29.630 0.00 0.00 0.00 2.27
666 851 6.512177 TTTTTGTTGTACGCGCATAAATTT 57.488 29.167 5.73 0.00 0.00 1.82
667 852 5.487552 TTTGTTGTACGCGCATAAATTTG 57.512 34.783 5.73 0.00 0.00 2.32
668 853 3.493272 TGTTGTACGCGCATAAATTTGG 58.507 40.909 5.73 0.00 0.00 3.28
669 854 2.834574 TGTACGCGCATAAATTTGGG 57.165 45.000 5.73 0.00 0.00 4.12
670 855 2.085320 TGTACGCGCATAAATTTGGGT 58.915 42.857 5.73 1.23 32.52 4.51
671 856 2.488545 TGTACGCGCATAAATTTGGGTT 59.511 40.909 5.73 0.00 32.52 4.11
672 857 1.989430 ACGCGCATAAATTTGGGTTG 58.011 45.000 5.73 0.00 32.52 3.77
673 858 1.276415 CGCGCATAAATTTGGGTTGG 58.724 50.000 8.75 0.00 32.52 3.77
674 859 1.403514 CGCGCATAAATTTGGGTTGGT 60.404 47.619 8.75 0.00 32.52 3.67
675 860 2.267426 GCGCATAAATTTGGGTTGGTC 58.733 47.619 0.30 0.00 32.52 4.02
676 861 2.094234 GCGCATAAATTTGGGTTGGTCT 60.094 45.455 0.30 0.00 32.52 3.85
677 862 3.616317 GCGCATAAATTTGGGTTGGTCTT 60.616 43.478 0.30 0.00 32.52 3.01
678 863 4.173256 CGCATAAATTTGGGTTGGTCTTC 58.827 43.478 0.00 0.00 0.00 2.87
679 864 4.503910 GCATAAATTTGGGTTGGTCTTCC 58.496 43.478 0.00 0.00 0.00 3.46
680 865 4.743493 CATAAATTTGGGTTGGTCTTCCG 58.257 43.478 0.00 0.00 36.30 4.30
681 866 2.375014 AATTTGGGTTGGTCTTCCGT 57.625 45.000 0.00 0.00 36.30 4.69
682 867 2.375014 ATTTGGGTTGGTCTTCCGTT 57.625 45.000 0.00 0.00 36.30 4.44
683 868 1.394618 TTTGGGTTGGTCTTCCGTTG 58.605 50.000 0.00 0.00 36.30 4.10
684 869 0.466555 TTGGGTTGGTCTTCCGTTGG 60.467 55.000 0.00 0.00 36.30 3.77
685 870 1.346479 TGGGTTGGTCTTCCGTTGGA 61.346 55.000 0.00 0.00 36.30 3.53
686 871 0.037734 GGGTTGGTCTTCCGTTGGAT 59.962 55.000 0.00 0.00 36.30 3.41
687 872 1.165270 GGTTGGTCTTCCGTTGGATG 58.835 55.000 0.00 0.00 36.30 3.51
688 873 0.521735 GTTGGTCTTCCGTTGGATGC 59.478 55.000 0.00 0.00 36.30 3.91
689 874 0.400213 TTGGTCTTCCGTTGGATGCT 59.600 50.000 0.00 0.00 36.30 3.79
690 875 0.400213 TGGTCTTCCGTTGGATGCTT 59.600 50.000 0.00 0.00 36.30 3.91
691 876 1.087501 GGTCTTCCGTTGGATGCTTC 58.912 55.000 0.00 0.00 0.00 3.86
692 877 1.610624 GGTCTTCCGTTGGATGCTTCA 60.611 52.381 1.64 0.00 0.00 3.02
693 878 1.734465 GTCTTCCGTTGGATGCTTCAG 59.266 52.381 1.64 0.00 0.00 3.02
694 879 0.449388 CTTCCGTTGGATGCTTCAGC 59.551 55.000 1.64 0.00 42.50 4.26
695 880 0.960364 TTCCGTTGGATGCTTCAGCC 60.960 55.000 1.64 0.00 40.77 4.85
696 881 2.753966 CCGTTGGATGCTTCAGCCG 61.754 63.158 1.64 0.32 43.67 5.52
697 882 1.741401 CGTTGGATGCTTCAGCCGA 60.741 57.895 1.64 0.00 43.67 5.54
698 883 1.796796 GTTGGATGCTTCAGCCGAC 59.203 57.895 5.82 5.82 45.26 4.79
699 884 1.377202 TTGGATGCTTCAGCCGACC 60.377 57.895 1.64 0.00 43.67 4.79
700 885 2.892425 GGATGCTTCAGCCGACCG 60.892 66.667 1.64 0.00 41.18 4.79
701 886 2.184322 GATGCTTCAGCCGACCGA 59.816 61.111 0.00 0.00 41.18 4.69
702 887 2.125512 ATGCTTCAGCCGACCGAC 60.126 61.111 0.00 0.00 41.18 4.79
703 888 3.665675 ATGCTTCAGCCGACCGACC 62.666 63.158 0.00 0.00 41.18 4.79
705 890 3.691342 CTTCAGCCGACCGACCCA 61.691 66.667 0.00 0.00 0.00 4.51
706 891 3.234630 CTTCAGCCGACCGACCCAA 62.235 63.158 0.00 0.00 0.00 4.12
707 892 2.725203 CTTCAGCCGACCGACCCAAA 62.725 60.000 0.00 0.00 0.00 3.28
708 893 2.999739 TTCAGCCGACCGACCCAAAC 63.000 60.000 0.00 0.00 0.00 2.93
709 894 4.675029 AGCCGACCGACCCAAACG 62.675 66.667 0.00 0.00 0.00 3.60
719 904 3.734776 CGACCCAAACGGATAAAAGAC 57.265 47.619 0.00 0.00 34.64 3.01
720 905 2.093152 CGACCCAAACGGATAAAAGACG 59.907 50.000 0.00 0.00 34.64 4.18
721 906 3.328505 GACCCAAACGGATAAAAGACGA 58.671 45.455 0.00 0.00 34.64 4.20
722 907 3.742385 ACCCAAACGGATAAAAGACGAA 58.258 40.909 0.00 0.00 34.64 3.85
723 908 3.499537 ACCCAAACGGATAAAAGACGAAC 59.500 43.478 0.00 0.00 34.64 3.95
724 909 3.499157 CCCAAACGGATAAAAGACGAACA 59.501 43.478 0.00 0.00 0.00 3.18
725 910 4.023878 CCCAAACGGATAAAAGACGAACAA 60.024 41.667 0.00 0.00 0.00 2.83
726 911 5.505985 CCCAAACGGATAAAAGACGAACAAA 60.506 40.000 0.00 0.00 0.00 2.83
727 912 5.397240 CCAAACGGATAAAAGACGAACAAAC 59.603 40.000 0.00 0.00 0.00 2.93
728 913 4.737353 ACGGATAAAAGACGAACAAACC 57.263 40.909 0.00 0.00 0.00 3.27
729 914 4.128643 ACGGATAAAAGACGAACAAACCA 58.871 39.130 0.00 0.00 0.00 3.67
730 915 4.024641 ACGGATAAAAGACGAACAAACCAC 60.025 41.667 0.00 0.00 0.00 4.16
731 916 4.460505 GGATAAAAGACGAACAAACCACG 58.539 43.478 0.00 0.00 0.00 4.94
732 917 2.182904 AAAAGACGAACAAACCACGC 57.817 45.000 0.00 0.00 0.00 5.34
733 918 0.379316 AAAGACGAACAAACCACGCC 59.621 50.000 0.00 0.00 0.00 5.68
734 919 0.463116 AAGACGAACAAACCACGCCT 60.463 50.000 0.00 0.00 0.00 5.52
735 920 0.463116 AGACGAACAAACCACGCCTT 60.463 50.000 0.00 0.00 0.00 4.35
736 921 0.379316 GACGAACAAACCACGCCTTT 59.621 50.000 0.00 0.00 0.00 3.11
737 922 0.099791 ACGAACAAACCACGCCTTTG 59.900 50.000 0.00 0.00 35.17 2.77
738 923 0.593773 CGAACAAACCACGCCTTTGG 60.594 55.000 5.38 0.00 43.04 3.28
745 930 2.414750 CCACGCCTTTGGTTGAAGT 58.585 52.632 0.00 0.00 0.00 3.01
746 931 0.744281 CCACGCCTTTGGTTGAAGTT 59.256 50.000 0.00 0.00 0.00 2.66
747 932 1.535860 CCACGCCTTTGGTTGAAGTTG 60.536 52.381 0.00 0.00 0.00 3.16
748 933 0.102300 ACGCCTTTGGTTGAAGTTGC 59.898 50.000 0.00 0.00 0.00 4.17
749 934 0.385390 CGCCTTTGGTTGAAGTTGCT 59.615 50.000 0.00 0.00 0.00 3.91
750 935 1.202405 CGCCTTTGGTTGAAGTTGCTT 60.202 47.619 0.00 0.00 0.00 3.91
802 1009 0.667184 CTTGCGGGGAAAATGTGTGC 60.667 55.000 0.00 0.00 0.00 4.57
803 1010 2.126502 GCGGGGAAAATGTGTGCG 60.127 61.111 0.00 0.00 0.00 5.34
805 1012 2.625823 CGGGGAAAATGTGTGCGCT 61.626 57.895 9.73 0.00 0.00 5.92
815 1022 0.036483 TGTGTGCGCTACCATCATGT 60.036 50.000 9.73 0.00 0.00 3.21
916 1124 2.093235 AGCACAGTCTTATCTGCTTCCC 60.093 50.000 0.00 0.00 36.57 3.97
919 1127 2.567615 ACAGTCTTATCTGCTTCCCGTT 59.432 45.455 0.00 0.00 38.84 4.44
920 1128 3.008049 ACAGTCTTATCTGCTTCCCGTTT 59.992 43.478 0.00 0.00 38.84 3.60
923 1131 3.866327 GTCTTATCTGCTTCCCGTTTCTC 59.134 47.826 0.00 0.00 0.00 2.87
924 1132 3.769844 TCTTATCTGCTTCCCGTTTCTCT 59.230 43.478 0.00 0.00 0.00 3.10
925 1133 2.682155 ATCTGCTTCCCGTTTCTCTC 57.318 50.000 0.00 0.00 0.00 3.20
926 1134 1.633774 TCTGCTTCCCGTTTCTCTCT 58.366 50.000 0.00 0.00 0.00 3.10
927 1135 1.546476 TCTGCTTCCCGTTTCTCTCTC 59.454 52.381 0.00 0.00 0.00 3.20
928 1136 1.273606 CTGCTTCCCGTTTCTCTCTCA 59.726 52.381 0.00 0.00 0.00 3.27
1007 1215 1.064952 CGAACCAACCCACACAAACTC 59.935 52.381 0.00 0.00 0.00 3.01
1013 1221 1.775385 ACCCACACAAACTCCCAAAG 58.225 50.000 0.00 0.00 0.00 2.77
1035 1243 2.484287 ATTGCCCTCCTCACAACCCG 62.484 60.000 0.00 0.00 0.00 5.28
1037 1245 3.636231 CCCTCCTCACAACCCGCA 61.636 66.667 0.00 0.00 0.00 5.69
1038 1246 2.358737 CCTCCTCACAACCCGCAC 60.359 66.667 0.00 0.00 0.00 5.34
1041 1249 1.821061 CTCCTCACAACCCGCACTCT 61.821 60.000 0.00 0.00 0.00 3.24
1425 2148 2.194326 GCAGAAGATCCTGGGGGC 59.806 66.667 0.00 0.00 34.82 5.80
1490 2669 2.928396 ACTACGGCAAGGTGGGCT 60.928 61.111 0.00 0.00 0.00 5.19
1654 2880 2.579738 GGCTTCGAGGACTGACCC 59.420 66.667 0.00 0.00 40.05 4.46
1687 2921 1.005275 CATCGGCATGGCTCGATCT 60.005 57.895 18.09 0.00 38.88 2.75
1789 3040 2.294479 CGTAGCAAAAACAGACCGTG 57.706 50.000 0.00 0.00 0.00 4.94
1814 3065 1.469767 CGAAGACATGCGATCCTGACA 60.470 52.381 0.00 0.00 0.00 3.58
1930 3190 7.148869 GGCGTGCGTATTTTATTTCTTTCTTTT 60.149 33.333 0.00 0.00 0.00 2.27
2240 3752 2.191128 ACGTCTAACTCCTACACCGT 57.809 50.000 0.00 0.00 0.00 4.83
2244 3756 2.351111 GTCTAACTCCTACACCGTCGAG 59.649 54.545 0.00 0.00 0.00 4.04
2253 3765 1.233285 ACACCGTCGAGTTCTACGCT 61.233 55.000 0.00 0.00 37.78 5.07
2254 3766 0.520827 CACCGTCGAGTTCTACGCTC 60.521 60.000 0.00 0.00 37.78 5.03
2255 3767 0.673022 ACCGTCGAGTTCTACGCTCT 60.673 55.000 0.00 0.00 37.78 4.09
2256 3768 0.026544 CCGTCGAGTTCTACGCTCTC 59.973 60.000 0.00 0.00 37.78 3.20
2267 3779 4.544001 CGCTCTCGTCTACTCCCT 57.456 61.111 0.00 0.00 0.00 4.20
2268 3780 2.313267 CGCTCTCGTCTACTCCCTC 58.687 63.158 0.00 0.00 0.00 4.30
2269 3781 1.492319 CGCTCTCGTCTACTCCCTCG 61.492 65.000 0.00 0.00 0.00 4.63
2270 3782 1.778027 GCTCTCGTCTACTCCCTCGC 61.778 65.000 0.00 0.00 0.00 5.03
2271 3783 0.179067 CTCTCGTCTACTCCCTCGCT 60.179 60.000 0.00 0.00 0.00 4.93
2272 3784 0.252479 TCTCGTCTACTCCCTCGCTT 59.748 55.000 0.00 0.00 0.00 4.68
2273 3785 1.096416 CTCGTCTACTCCCTCGCTTT 58.904 55.000 0.00 0.00 0.00 3.51
2274 3786 1.064357 CTCGTCTACTCCCTCGCTTTC 59.936 57.143 0.00 0.00 0.00 2.62
2275 3787 1.096416 CGTCTACTCCCTCGCTTTCT 58.904 55.000 0.00 0.00 0.00 2.52
2276 3788 2.093288 TCGTCTACTCCCTCGCTTTCTA 60.093 50.000 0.00 0.00 0.00 2.10
2277 3789 2.681848 CGTCTACTCCCTCGCTTTCTAA 59.318 50.000 0.00 0.00 0.00 2.10
2278 3790 3.128242 CGTCTACTCCCTCGCTTTCTAAA 59.872 47.826 0.00 0.00 0.00 1.85
2279 3791 4.202030 CGTCTACTCCCTCGCTTTCTAAAT 60.202 45.833 0.00 0.00 0.00 1.40
2280 3792 5.008415 CGTCTACTCCCTCGCTTTCTAAATA 59.992 44.000 0.00 0.00 0.00 1.40
2281 3793 6.294065 CGTCTACTCCCTCGCTTTCTAAATAT 60.294 42.308 0.00 0.00 0.00 1.28
2282 3794 7.094890 CGTCTACTCCCTCGCTTTCTAAATATA 60.095 40.741 0.00 0.00 0.00 0.86
2283 3795 8.574737 GTCTACTCCCTCGCTTTCTAAATATAA 58.425 37.037 0.00 0.00 0.00 0.98
2284 3796 9.139734 TCTACTCCCTCGCTTTCTAAATATAAA 57.860 33.333 0.00 0.00 0.00 1.40
2285 3797 9.930693 CTACTCCCTCGCTTTCTAAATATAAAT 57.069 33.333 0.00 0.00 0.00 1.40
2286 3798 8.834749 ACTCCCTCGCTTTCTAAATATAAATC 57.165 34.615 0.00 0.00 0.00 2.17
2287 3799 7.878644 ACTCCCTCGCTTTCTAAATATAAATCC 59.121 37.037 0.00 0.00 0.00 3.01
2288 3800 7.974504 TCCCTCGCTTTCTAAATATAAATCCT 58.025 34.615 0.00 0.00 0.00 3.24
2289 3801 8.437575 TCCCTCGCTTTCTAAATATAAATCCTT 58.562 33.333 0.00 0.00 0.00 3.36
2290 3802 9.067986 CCCTCGCTTTCTAAATATAAATCCTTT 57.932 33.333 0.00 0.00 0.00 3.11
2462 3974 9.261035 AGTCGAATTATATGGGAGATTCATAGT 57.739 33.333 0.00 0.00 31.58 2.12
2509 4021 5.395768 GGTCAATCAGCAGTGTAGGAGTTAT 60.396 44.000 0.00 0.00 0.00 1.89
2511 4023 6.697892 GTCAATCAGCAGTGTAGGAGTTATAC 59.302 42.308 0.00 0.00 0.00 1.47
2528 4040 8.350722 GGAGTTATACGAGACATTGTAGATGAA 58.649 37.037 0.00 0.00 0.00 2.57
2545 4057 8.519526 TGTAGATGAAAATTACCAAATTCGCTT 58.480 29.630 0.00 0.00 34.12 4.68
2557 4069 9.921637 TTACCAAATTCGCTTATCTGAAAAATT 57.078 25.926 0.00 0.00 0.00 1.82
2558 4070 8.831715 ACCAAATTCGCTTATCTGAAAAATTT 57.168 26.923 0.00 0.00 0.00 1.82
2605 4148 7.992008 AGTTTAGCTTCTGTAGTCTACATCTC 58.008 38.462 13.10 3.93 38.15 2.75
2620 4181 6.479660 GTCTACATCTCGTAACACTAGCTAGT 59.520 42.308 20.95 20.95 36.90 2.57
2621 4182 7.651304 GTCTACATCTCGTAACACTAGCTAGTA 59.349 40.741 25.63 8.44 34.13 1.82
2622 4183 6.601741 ACATCTCGTAACACTAGCTAGTAC 57.398 41.667 25.63 18.68 34.13 2.73
2623 4184 6.347696 ACATCTCGTAACACTAGCTAGTACT 58.652 40.000 25.63 17.22 34.13 2.73
2624 4185 6.479660 ACATCTCGTAACACTAGCTAGTACTC 59.520 42.308 25.63 14.66 34.13 2.59
2625 4186 5.355596 TCTCGTAACACTAGCTAGTACTCC 58.644 45.833 25.63 13.08 34.13 3.85
2626 4187 4.446371 TCGTAACACTAGCTAGTACTCCC 58.554 47.826 25.63 11.79 34.13 4.30
2627 4188 4.163078 TCGTAACACTAGCTAGTACTCCCT 59.837 45.833 25.63 9.36 34.13 4.20
2628 4189 4.511082 CGTAACACTAGCTAGTACTCCCTC 59.489 50.000 25.63 11.45 34.13 4.30
2629 4190 3.581265 ACACTAGCTAGTACTCCCTCC 57.419 52.381 25.63 0.00 34.13 4.30
2630 4191 2.158784 ACACTAGCTAGTACTCCCTCCG 60.159 54.545 25.63 12.53 34.13 4.63
2631 4192 1.202794 ACTAGCTAGTACTCCCTCCGC 60.203 57.143 24.97 0.00 34.13 5.54
2632 4193 1.072648 CTAGCTAGTACTCCCTCCGCT 59.927 57.143 12.92 2.04 0.00 5.52
2633 4194 0.179012 AGCTAGTACTCCCTCCGCTC 60.179 60.000 0.00 0.00 0.00 5.03
2634 4195 0.179012 GCTAGTACTCCCTCCGCTCT 60.179 60.000 0.00 0.00 0.00 4.09
2635 4196 1.751382 GCTAGTACTCCCTCCGCTCTT 60.751 57.143 0.00 0.00 0.00 2.85
2636 4197 2.486907 GCTAGTACTCCCTCCGCTCTTA 60.487 54.545 0.00 0.00 0.00 2.10
2637 4198 3.811454 GCTAGTACTCCCTCCGCTCTTAT 60.811 52.174 0.00 0.00 0.00 1.73
2638 4199 4.565236 GCTAGTACTCCCTCCGCTCTTATA 60.565 50.000 0.00 0.00 0.00 0.98
2639 4200 4.661247 AGTACTCCCTCCGCTCTTATAT 57.339 45.455 0.00 0.00 0.00 0.86
2640 4201 5.000570 AGTACTCCCTCCGCTCTTATATT 57.999 43.478 0.00 0.00 0.00 1.28
2641 4202 5.395611 AGTACTCCCTCCGCTCTTATATTT 58.604 41.667 0.00 0.00 0.00 1.40
2642 4203 6.550163 AGTACTCCCTCCGCTCTTATATTTA 58.450 40.000 0.00 0.00 0.00 1.40
2643 4204 7.183460 AGTACTCCCTCCGCTCTTATATTTAT 58.817 38.462 0.00 0.00 0.00 1.40
2644 4205 6.287589 ACTCCCTCCGCTCTTATATTTATG 57.712 41.667 0.00 0.00 0.00 1.90
2645 4206 5.780793 ACTCCCTCCGCTCTTATATTTATGT 59.219 40.000 0.00 0.00 0.00 2.29
2646 4207 6.037786 TCCCTCCGCTCTTATATTTATGTG 57.962 41.667 0.00 0.00 0.00 3.21
2647 4208 5.778241 TCCCTCCGCTCTTATATTTATGTGA 59.222 40.000 0.00 0.00 0.00 3.58
2648 4209 6.440647 TCCCTCCGCTCTTATATTTATGTGAT 59.559 38.462 0.00 0.00 0.00 3.06
2649 4210 7.038302 TCCCTCCGCTCTTATATTTATGTGATT 60.038 37.037 0.00 0.00 0.00 2.57
2650 4211 7.278868 CCCTCCGCTCTTATATTTATGTGATTC 59.721 40.741 0.00 0.00 0.00 2.52
2651 4212 7.819415 CCTCCGCTCTTATATTTATGTGATTCA 59.181 37.037 0.00 0.00 0.00 2.57
2652 4213 8.534333 TCCGCTCTTATATTTATGTGATTCAC 57.466 34.615 9.93 9.93 34.56 3.18
2664 4225 3.779444 TGTGATTCACAGAGGGAGTACT 58.221 45.455 15.41 0.00 39.62 2.73
2665 4226 4.930696 TGTGATTCACAGAGGGAGTACTA 58.069 43.478 15.41 0.00 39.62 1.82
2666 4227 4.950475 TGTGATTCACAGAGGGAGTACTAG 59.050 45.833 15.41 0.00 39.62 2.57
2667 4228 4.339814 GTGATTCACAGAGGGAGTACTAGG 59.660 50.000 11.93 0.00 34.08 3.02
2668 4229 3.383698 TTCACAGAGGGAGTACTAGGG 57.616 52.381 0.00 0.00 0.00 3.53
2669 4230 2.285707 TCACAGAGGGAGTACTAGGGT 58.714 52.381 0.00 0.00 0.00 4.34
2670 4231 2.241685 TCACAGAGGGAGTACTAGGGTC 59.758 54.545 0.00 0.00 0.00 4.46
2681 4242 1.400941 ACTAGGGTCTAGGGTCCCAA 58.599 55.000 11.55 0.00 45.64 4.12
2734 4299 7.915397 GGCAGCTCGATTTTAAATTTCTAATCA 59.085 33.333 18.06 9.44 0.00 2.57
2737 4302 9.396022 AGCTCGATTTTAAATTTCTAATCAGGA 57.604 29.630 18.06 11.03 0.00 3.86
2767 4332 1.803519 GAGTCTCCGCGCAAGAGTG 60.804 63.158 18.83 0.44 43.02 3.51
2769 4334 4.742201 TCTCCGCGCAAGAGTGGC 62.742 66.667 20.34 0.00 41.35 5.01
2773 4338 3.120385 CGCGCAAGAGTGGCATCA 61.120 61.111 8.75 0.00 43.02 3.07
2776 4341 0.171903 GCGCAAGAGTGGCATCAATT 59.828 50.000 0.30 0.00 43.02 2.32
2780 4345 3.428452 CGCAAGAGTGGCATCAATTGATT 60.428 43.478 18.41 3.66 43.02 2.57
2899 4483 1.285023 CGTCGTAGCCGGATAAGGG 59.715 63.158 12.74 1.90 33.95 3.95
2956 4546 2.032722 CGGAAATGTCGAACGGAACAAA 60.033 45.455 0.00 0.00 0.00 2.83
2958 4548 2.656192 AATGTCGAACGGAACAAACG 57.344 45.000 0.00 0.00 37.36 3.60
2959 4549 0.863144 ATGTCGAACGGAACAAACGG 59.137 50.000 0.00 0.00 35.23 4.44
2960 4550 0.179116 TGTCGAACGGAACAAACGGA 60.179 50.000 0.00 0.00 35.23 4.69
2961 4551 0.230515 GTCGAACGGAACAAACGGAC 59.769 55.000 0.00 0.00 35.23 4.79
3097 5602 1.459158 TGTGGGTGGCCAAATGCTT 60.459 52.632 7.24 0.00 40.92 3.91
3098 5603 1.004679 GTGGGTGGCCAAATGCTTG 60.005 57.895 7.24 0.00 40.92 4.01
3110 5615 2.765250 AATGCTTGGACGTCGACGCT 62.765 55.000 35.92 23.26 44.43 5.07
3116 5621 3.248171 GACGTCGACGCTGATGGC 61.248 66.667 35.92 13.75 44.43 4.40
3117 5622 3.964221 GACGTCGACGCTGATGGCA 62.964 63.158 35.92 0.00 44.43 4.92
3118 5623 2.809174 CGTCGACGCTGATGGCAA 60.809 61.111 26.59 0.00 41.91 4.52
3119 5624 2.792290 CGTCGACGCTGATGGCAAG 61.792 63.158 26.59 0.00 41.91 4.01
3120 5625 2.125552 TCGACGCTGATGGCAAGG 60.126 61.111 0.00 0.00 41.91 3.61
3121 5626 2.125552 CGACGCTGATGGCAAGGA 60.126 61.111 0.00 0.00 41.91 3.36
3216 5721 3.944015 GCATGTGAAGCCCTATCATATCC 59.056 47.826 0.00 0.00 0.00 2.59
3331 5836 0.856982 TCCTGTCCACCCAAACCAAT 59.143 50.000 0.00 0.00 0.00 3.16
3366 5871 1.999735 CATTACATTGGCACGTCGACT 59.000 47.619 14.70 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 0.399949 AGGGGAGAGTGTTGTCCACA 60.400 55.000 0.00 0.00 42.60 4.17
148 149 3.387397 TGATGATGCATAGCAACGAGAG 58.613 45.455 0.00 0.00 43.62 3.20
167 168 0.670239 ACGCACACGCAAGATCATGA 60.670 50.000 1.25 0.00 45.53 3.07
223 224 4.036977 TCGTGTTCGAGGGCAAAC 57.963 55.556 0.00 0.00 41.35 2.93
231 232 1.289066 CCTTGCTCCTCGTGTTCGA 59.711 57.895 0.00 0.00 44.12 3.71
234 235 2.357517 CGCCTTGCTCCTCGTGTT 60.358 61.111 0.00 0.00 0.00 3.32
235 236 4.379243 CCGCCTTGCTCCTCGTGT 62.379 66.667 0.00 0.00 0.00 4.49
237 238 3.077556 ATCCGCCTTGCTCCTCGT 61.078 61.111 0.00 0.00 0.00 4.18
239 240 1.227497 CTGATCCGCCTTGCTCCTC 60.227 63.158 0.00 0.00 0.00 3.71
240 241 2.906458 CTGATCCGCCTTGCTCCT 59.094 61.111 0.00 0.00 0.00 3.69
242 243 3.267860 CGCTGATCCGCCTTGCTC 61.268 66.667 3.31 0.00 0.00 4.26
246 247 4.393155 TGCACGCTGATCCGCCTT 62.393 61.111 3.31 0.00 0.00 4.35
247 248 4.827087 CTGCACGCTGATCCGCCT 62.827 66.667 3.31 0.00 0.00 5.52
251 252 3.503363 GGTGCTGCACGCTGATCC 61.503 66.667 24.86 7.06 40.11 3.36
253 254 3.052082 GTGGTGCTGCACGCTGAT 61.052 61.111 24.86 0.00 40.11 2.90
260 261 3.689002 TTGACGTGGTGGTGCTGCA 62.689 57.895 0.00 0.00 0.00 4.41
261 262 2.899838 TTGACGTGGTGGTGCTGC 60.900 61.111 0.00 0.00 0.00 5.25
262 263 2.542907 GGTTGACGTGGTGGTGCTG 61.543 63.158 0.00 0.00 0.00 4.41
263 264 2.203153 GGTTGACGTGGTGGTGCT 60.203 61.111 0.00 0.00 0.00 4.40
264 265 3.284449 GGGTTGACGTGGTGGTGC 61.284 66.667 0.00 0.00 0.00 5.01
265 266 2.593436 GGGGTTGACGTGGTGGTG 60.593 66.667 0.00 0.00 0.00 4.17
266 267 3.881104 GGGGGTTGACGTGGTGGT 61.881 66.667 0.00 0.00 0.00 4.16
283 284 4.078516 GACGACGGGGGAAGGTGG 62.079 72.222 0.00 0.00 0.00 4.61
285 286 2.524887 TTGACGACGGGGGAAGGT 60.525 61.111 0.00 0.00 0.00 3.50
286 287 2.264794 CTTGACGACGGGGGAAGG 59.735 66.667 0.00 0.00 0.00 3.46
295 296 2.182030 CTCCTCCGGCTTGACGAC 59.818 66.667 0.00 0.00 35.47 4.34
297 298 3.068691 TCCTCCTCCGGCTTGACG 61.069 66.667 0.00 0.00 0.00 4.35
298 299 2.726351 CCTCCTCCTCCGGCTTGAC 61.726 68.421 0.00 0.00 0.00 3.18
299 300 2.364317 CCTCCTCCTCCGGCTTGA 60.364 66.667 0.00 0.00 0.00 3.02
300 301 4.168291 GCCTCCTCCTCCGGCTTG 62.168 72.222 0.00 0.00 40.62 4.01
318 503 3.077556 ACCTGGTAGGCAGCCTCG 61.078 66.667 20.38 5.06 39.63 4.63
343 528 3.056328 GTTGGTGAAGGCCTCCGC 61.056 66.667 5.23 0.00 0.00 5.54
346 531 0.329596 ATGGAGTTGGTGAAGGCCTC 59.670 55.000 5.23 0.00 0.00 4.70
347 532 0.329596 GATGGAGTTGGTGAAGGCCT 59.670 55.000 0.00 0.00 0.00 5.19
350 535 2.028112 TCTTCGATGGAGTTGGTGAAGG 60.028 50.000 0.00 0.00 34.92 3.46
351 536 3.257393 CTCTTCGATGGAGTTGGTGAAG 58.743 50.000 7.50 0.00 35.36 3.02
352 537 2.028112 CCTCTTCGATGGAGTTGGTGAA 60.028 50.000 12.73 0.00 0.00 3.18
353 538 1.550524 CCTCTTCGATGGAGTTGGTGA 59.449 52.381 12.73 0.00 0.00 4.02
354 539 1.550524 TCCTCTTCGATGGAGTTGGTG 59.449 52.381 12.73 1.10 0.00 4.17
355 540 1.938585 TCCTCTTCGATGGAGTTGGT 58.061 50.000 12.73 0.00 0.00 3.67
359 544 1.473278 GTCGTTCCTCTTCGATGGAGT 59.527 52.381 12.73 0.00 38.32 3.85
360 545 1.532090 CGTCGTTCCTCTTCGATGGAG 60.532 57.143 8.42 8.42 38.77 3.86
363 548 0.450583 TCCGTCGTTCCTCTTCGATG 59.549 55.000 0.00 0.00 41.06 3.84
364 549 1.132643 CTTCCGTCGTTCCTCTTCGAT 59.867 52.381 0.00 0.00 38.32 3.59
365 550 0.520404 CTTCCGTCGTTCCTCTTCGA 59.480 55.000 0.00 0.00 0.00 3.71
366 551 0.456312 CCTTCCGTCGTTCCTCTTCG 60.456 60.000 0.00 0.00 0.00 3.79
368 553 1.292541 GCCTTCCGTCGTTCCTCTT 59.707 57.895 0.00 0.00 0.00 2.85
369 554 2.647158 GGCCTTCCGTCGTTCCTCT 61.647 63.158 0.00 0.00 0.00 3.69
370 555 2.125633 GGCCTTCCGTCGTTCCTC 60.126 66.667 0.00 0.00 0.00 3.71
380 565 0.100861 CTCGTCTACTTCGGCCTTCC 59.899 60.000 0.00 0.00 0.00 3.46
381 566 0.100861 CCTCGTCTACTTCGGCCTTC 59.899 60.000 0.00 0.00 0.00 3.46
382 567 1.946475 GCCTCGTCTACTTCGGCCTT 61.946 60.000 0.00 0.00 34.75 4.35
383 568 2.416432 GCCTCGTCTACTTCGGCCT 61.416 63.158 0.00 0.00 34.75 5.19
384 569 2.104530 GCCTCGTCTACTTCGGCC 59.895 66.667 0.00 0.00 34.75 6.13
388 573 1.404748 GTAGGTGGCCTCGTCTACTTC 59.595 57.143 3.32 0.00 34.61 3.01
389 574 1.472188 GTAGGTGGCCTCGTCTACTT 58.528 55.000 3.32 0.00 34.61 2.24
392 577 0.260816 ATGGTAGGTGGCCTCGTCTA 59.739 55.000 3.32 0.00 34.61 2.59
393 578 1.001760 ATGGTAGGTGGCCTCGTCT 59.998 57.895 3.32 0.00 34.61 4.18
394 579 1.144057 CATGGTAGGTGGCCTCGTC 59.856 63.158 3.32 0.00 34.61 4.20
395 580 3.031417 GCATGGTAGGTGGCCTCGT 62.031 63.158 3.32 4.45 34.61 4.18
396 581 2.203070 GCATGGTAGGTGGCCTCG 60.203 66.667 3.32 0.00 34.61 4.63
402 587 4.838152 AGCGCCGCATGGTAGGTG 62.838 66.667 13.36 0.00 40.75 4.00
403 588 4.530857 GAGCGCCGCATGGTAGGT 62.531 66.667 13.36 0.00 37.67 3.08
425 610 1.979693 GCAGAGAGGGTCGTGTCCT 60.980 63.158 0.00 0.00 37.33 3.85
427 612 2.179517 CGCAGAGAGGGTCGTGTC 59.820 66.667 0.00 0.00 0.00 3.67
428 613 3.374402 CCGCAGAGAGGGTCGTGT 61.374 66.667 0.00 0.00 0.00 4.49
468 653 3.735029 AGGTGTCGTCGAGTCGCC 61.735 66.667 7.92 7.23 38.55 5.54
469 654 2.502080 CAGGTGTCGTCGAGTCGC 60.502 66.667 7.92 2.09 0.00 5.19
470 655 2.502080 GCAGGTGTCGTCGAGTCG 60.502 66.667 6.09 6.09 0.00 4.18
471 656 1.729838 GTGCAGGTGTCGTCGAGTC 60.730 63.158 0.00 0.00 0.00 3.36
472 657 2.335369 GTGCAGGTGTCGTCGAGT 59.665 61.111 0.00 0.00 0.00 4.18
473 658 2.430921 GGTGCAGGTGTCGTCGAG 60.431 66.667 0.00 0.00 0.00 4.04
474 659 3.986006 GGGTGCAGGTGTCGTCGA 61.986 66.667 0.00 0.00 0.00 4.20
476 661 3.916392 CTCGGGTGCAGGTGTCGTC 62.916 68.421 0.00 0.00 0.00 4.20
477 662 3.991051 CTCGGGTGCAGGTGTCGT 61.991 66.667 0.00 0.00 0.00 4.34
491 676 4.585526 TATCGCTTGGCCGGCTCG 62.586 66.667 28.56 22.86 0.00 5.03
492 677 2.967615 GTATCGCTTGGCCGGCTC 60.968 66.667 28.56 17.27 0.00 4.70
493 678 4.891727 CGTATCGCTTGGCCGGCT 62.892 66.667 28.56 6.90 0.00 5.52
495 680 3.261951 CACGTATCGCTTGGCCGG 61.262 66.667 0.00 0.00 0.00 6.13
496 681 2.508439 ACACGTATCGCTTGGCCG 60.508 61.111 0.00 0.00 0.00 6.13
497 682 2.461110 CCACACGTATCGCTTGGCC 61.461 63.158 0.00 0.00 0.00 5.36
498 683 1.447140 TCCACACGTATCGCTTGGC 60.447 57.895 0.00 0.00 33.71 4.52
499 684 1.082117 GGTCCACACGTATCGCTTGG 61.082 60.000 0.00 4.05 34.60 3.61
500 685 1.410737 CGGTCCACACGTATCGCTTG 61.411 60.000 0.00 0.00 0.00 4.01
501 686 1.153901 CGGTCCACACGTATCGCTT 60.154 57.895 0.00 0.00 0.00 4.68
502 687 2.042259 TCGGTCCACACGTATCGCT 61.042 57.895 0.00 0.00 0.00 4.93
503 688 1.870901 GTCGGTCCACACGTATCGC 60.871 63.158 0.00 0.00 0.00 4.58
504 689 1.226491 GGTCGGTCCACACGTATCG 60.226 63.158 0.00 0.00 35.97 2.92
505 690 0.179145 CTGGTCGGTCCACACGTATC 60.179 60.000 0.00 0.00 41.93 2.24
506 691 1.888018 CTGGTCGGTCCACACGTAT 59.112 57.895 0.00 0.00 41.93 3.06
507 692 2.922950 GCTGGTCGGTCCACACGTA 61.923 63.158 0.00 0.00 41.93 3.57
508 693 4.295119 GCTGGTCGGTCCACACGT 62.295 66.667 0.00 0.00 41.93 4.49
509 694 3.991051 AGCTGGTCGGTCCACACG 61.991 66.667 0.00 0.00 41.93 4.49
510 695 2.357517 CAGCTGGTCGGTCCACAC 60.358 66.667 5.57 0.00 41.93 3.82
511 696 2.842462 ACAGCTGGTCGGTCCACA 60.842 61.111 19.93 0.00 41.93 4.17
512 697 2.357517 CACAGCTGGTCGGTCCAC 60.358 66.667 19.93 0.00 41.93 4.02
513 698 3.625897 CCACAGCTGGTCGGTCCA 61.626 66.667 19.93 0.00 45.01 4.02
514 699 4.394712 CCCACAGCTGGTCGGTCC 62.395 72.222 19.93 0.00 35.46 4.46
515 700 3.302347 CTCCCACAGCTGGTCGGTC 62.302 68.421 19.93 0.00 35.46 4.79
516 701 3.314331 CTCCCACAGCTGGTCGGT 61.314 66.667 19.93 0.00 35.46 4.69
517 702 3.314331 ACTCCCACAGCTGGTCGG 61.314 66.667 19.93 14.90 35.46 4.79
518 703 2.047844 CACTCCCACAGCTGGTCG 60.048 66.667 19.93 5.85 35.46 4.79
519 704 2.348998 CCACTCCCACAGCTGGTC 59.651 66.667 19.93 0.00 35.46 4.02
520 705 3.252284 CCCACTCCCACAGCTGGT 61.252 66.667 19.93 2.28 35.46 4.00
521 706 2.067932 TTTCCCACTCCCACAGCTGG 62.068 60.000 19.93 6.95 37.29 4.85
522 707 0.607489 CTTTCCCACTCCCACAGCTG 60.607 60.000 13.48 13.48 0.00 4.24
523 708 1.763770 CTTTCCCACTCCCACAGCT 59.236 57.895 0.00 0.00 0.00 4.24
524 709 1.973812 GCTTTCCCACTCCCACAGC 60.974 63.158 0.00 0.00 0.00 4.40
525 710 1.672356 CGCTTTCCCACTCCCACAG 60.672 63.158 0.00 0.00 0.00 3.66
526 711 2.391724 GACGCTTTCCCACTCCCACA 62.392 60.000 0.00 0.00 0.00 4.17
527 712 1.671379 GACGCTTTCCCACTCCCAC 60.671 63.158 0.00 0.00 0.00 4.61
528 713 2.747686 GACGCTTTCCCACTCCCA 59.252 61.111 0.00 0.00 0.00 4.37
529 714 2.046217 GGACGCTTTCCCACTCCC 60.046 66.667 0.00 0.00 38.70 4.30
547 732 3.979497 AAGCCAAACGGGAGGGGG 61.979 66.667 0.00 0.00 40.01 5.40
548 733 2.499303 ATCAAGCCAAACGGGAGGGG 62.499 60.000 0.00 0.00 40.01 4.79
549 734 1.000896 ATCAAGCCAAACGGGAGGG 60.001 57.895 0.00 0.00 40.01 4.30
550 735 1.937546 GCATCAAGCCAAACGGGAGG 61.938 60.000 0.00 0.00 40.01 4.30
551 736 1.508088 GCATCAAGCCAAACGGGAG 59.492 57.895 0.00 0.00 40.01 4.30
552 737 3.680156 GCATCAAGCCAAACGGGA 58.320 55.556 0.00 0.00 40.01 5.14
561 746 4.166011 GTCGGCGTGGCATCAAGC 62.166 66.667 6.85 0.00 45.44 4.01
562 747 3.853330 CGTCGGCGTGGCATCAAG 61.853 66.667 6.85 0.00 0.00 3.02
570 755 4.498520 ATCTCCTGCGTCGGCGTG 62.499 66.667 12.58 4.22 44.10 5.34
571 756 4.498520 CATCTCCTGCGTCGGCGT 62.499 66.667 12.58 0.00 44.10 5.68
572 757 3.120979 TACATCTCCTGCGTCGGCG 62.121 63.158 4.29 4.29 44.10 6.46
573 758 1.589196 GTACATCTCCTGCGTCGGC 60.589 63.158 0.00 0.00 40.52 5.54
574 759 1.065928 GGTACATCTCCTGCGTCGG 59.934 63.158 0.00 0.00 0.00 4.79
575 760 1.264557 CTAGGTACATCTCCTGCGTCG 59.735 57.143 0.00 0.00 36.60 5.12
576 761 2.550606 CTCTAGGTACATCTCCTGCGTC 59.449 54.545 0.00 0.00 36.60 5.19
577 762 2.577700 CTCTAGGTACATCTCCTGCGT 58.422 52.381 0.00 0.00 36.60 5.24
578 763 1.268352 GCTCTAGGTACATCTCCTGCG 59.732 57.143 0.00 0.00 36.60 5.18
579 764 1.268352 CGCTCTAGGTACATCTCCTGC 59.732 57.143 0.00 0.00 36.60 4.85
580 765 1.268352 GCGCTCTAGGTACATCTCCTG 59.732 57.143 0.00 0.00 36.60 3.86
581 766 1.133761 TGCGCTCTAGGTACATCTCCT 60.134 52.381 9.73 0.00 38.91 3.69
582 767 1.268352 CTGCGCTCTAGGTACATCTCC 59.732 57.143 9.73 0.00 0.00 3.71
583 768 1.335506 GCTGCGCTCTAGGTACATCTC 60.336 57.143 9.73 0.00 0.00 2.75
584 769 0.671251 GCTGCGCTCTAGGTACATCT 59.329 55.000 9.73 0.00 0.00 2.90
585 770 0.661780 CGCTGCGCTCTAGGTACATC 60.662 60.000 9.88 0.00 0.00 3.06
586 771 1.360551 CGCTGCGCTCTAGGTACAT 59.639 57.895 9.88 0.00 0.00 2.29
587 772 2.798689 CGCTGCGCTCTAGGTACA 59.201 61.111 9.88 0.00 0.00 2.90
610 795 3.694058 ATGCTCCTTCGCCAGCCTG 62.694 63.158 0.00 0.00 34.47 4.85
611 796 3.406200 ATGCTCCTTCGCCAGCCT 61.406 61.111 0.00 0.00 34.47 4.58
612 797 3.207669 CATGCTCCTTCGCCAGCC 61.208 66.667 0.00 0.00 34.47 4.85
613 798 2.437359 ACATGCTCCTTCGCCAGC 60.437 61.111 0.00 0.00 36.08 4.85
614 799 0.108186 TACACATGCTCCTTCGCCAG 60.108 55.000 0.00 0.00 0.00 4.85
615 800 0.541392 ATACACATGCTCCTTCGCCA 59.459 50.000 0.00 0.00 0.00 5.69
616 801 2.526304 TATACACATGCTCCTTCGCC 57.474 50.000 0.00 0.00 0.00 5.54
617 802 5.424121 AAATTATACACATGCTCCTTCGC 57.576 39.130 0.00 0.00 0.00 4.70
618 803 7.251704 AGAAAATTATACACATGCTCCTTCG 57.748 36.000 0.00 0.00 0.00 3.79
619 804 9.860898 AAAAGAAAATTATACACATGCTCCTTC 57.139 29.630 0.00 0.00 0.00 3.46
643 828 6.347881 CAAATTTATGCGCGTACAACAAAAA 58.652 32.000 9.30 1.08 0.00 1.94
644 829 5.107837 CCAAATTTATGCGCGTACAACAAAA 60.108 36.000 9.30 1.87 0.00 2.44
645 830 4.383052 CCAAATTTATGCGCGTACAACAAA 59.617 37.500 9.30 2.66 0.00 2.83
646 831 3.914966 CCAAATTTATGCGCGTACAACAA 59.085 39.130 9.30 1.02 0.00 2.83
647 832 3.493272 CCAAATTTATGCGCGTACAACA 58.507 40.909 9.30 0.00 0.00 3.33
648 833 2.849473 CCCAAATTTATGCGCGTACAAC 59.151 45.455 9.30 0.00 0.00 3.32
649 834 2.488545 ACCCAAATTTATGCGCGTACAA 59.511 40.909 9.30 7.67 0.00 2.41
650 835 2.085320 ACCCAAATTTATGCGCGTACA 58.915 42.857 9.30 2.82 0.00 2.90
651 836 2.836479 ACCCAAATTTATGCGCGTAC 57.164 45.000 9.30 0.00 0.00 3.67
652 837 2.159366 CCAACCCAAATTTATGCGCGTA 60.159 45.455 8.43 4.92 0.00 4.42
653 838 1.403514 CCAACCCAAATTTATGCGCGT 60.404 47.619 8.43 7.55 0.00 6.01
654 839 1.276415 CCAACCCAAATTTATGCGCG 58.724 50.000 0.00 0.00 0.00 6.86
655 840 2.094234 AGACCAACCCAAATTTATGCGC 60.094 45.455 0.00 0.00 0.00 6.09
656 841 3.866883 AGACCAACCCAAATTTATGCG 57.133 42.857 0.00 0.00 0.00 4.73
657 842 4.503910 GGAAGACCAACCCAAATTTATGC 58.496 43.478 0.00 0.00 35.97 3.14
658 843 4.219725 ACGGAAGACCAACCCAAATTTATG 59.780 41.667 0.00 0.00 35.59 1.90
659 844 4.412843 ACGGAAGACCAACCCAAATTTAT 58.587 39.130 0.00 0.00 35.59 1.40
660 845 3.834938 ACGGAAGACCAACCCAAATTTA 58.165 40.909 0.00 0.00 35.59 1.40
661 846 2.673258 ACGGAAGACCAACCCAAATTT 58.327 42.857 0.00 0.00 35.59 1.82
662 847 2.364002 CAACGGAAGACCAACCCAAATT 59.636 45.455 0.00 0.00 35.59 1.82
663 848 1.960689 CAACGGAAGACCAACCCAAAT 59.039 47.619 0.00 0.00 35.59 2.32
664 849 1.394618 CAACGGAAGACCAACCCAAA 58.605 50.000 0.00 0.00 35.59 3.28
665 850 0.466555 CCAACGGAAGACCAACCCAA 60.467 55.000 0.00 0.00 35.59 4.12
666 851 1.149627 CCAACGGAAGACCAACCCA 59.850 57.895 0.00 0.00 35.59 4.51
667 852 0.037734 ATCCAACGGAAGACCAACCC 59.962 55.000 0.00 0.00 34.34 4.11
668 853 1.165270 CATCCAACGGAAGACCAACC 58.835 55.000 0.00 0.00 34.34 3.77
669 854 0.521735 GCATCCAACGGAAGACCAAC 59.478 55.000 0.00 0.00 34.34 3.77
670 855 0.400213 AGCATCCAACGGAAGACCAA 59.600 50.000 0.00 0.00 34.34 3.67
671 856 0.400213 AAGCATCCAACGGAAGACCA 59.600 50.000 0.00 0.00 34.34 4.02
672 857 1.087501 GAAGCATCCAACGGAAGACC 58.912 55.000 0.00 0.00 34.34 3.85
673 858 1.734465 CTGAAGCATCCAACGGAAGAC 59.266 52.381 0.00 0.00 34.34 3.01
674 859 1.945819 GCTGAAGCATCCAACGGAAGA 60.946 52.381 0.00 0.00 41.59 2.87
675 860 0.449388 GCTGAAGCATCCAACGGAAG 59.551 55.000 0.00 0.00 41.59 3.46
676 861 0.960364 GGCTGAAGCATCCAACGGAA 60.960 55.000 4.43 0.00 44.36 4.30
677 862 1.377202 GGCTGAAGCATCCAACGGA 60.377 57.895 4.43 0.00 44.36 4.69
678 863 2.753966 CGGCTGAAGCATCCAACGG 61.754 63.158 4.43 0.00 44.36 4.44
679 864 1.741401 TCGGCTGAAGCATCCAACG 60.741 57.895 4.43 0.00 44.36 4.10
680 865 1.648467 GGTCGGCTGAAGCATCCAAC 61.648 60.000 0.00 0.00 44.36 3.77
681 866 1.377202 GGTCGGCTGAAGCATCCAA 60.377 57.895 0.00 0.00 44.36 3.53
682 867 2.268920 GGTCGGCTGAAGCATCCA 59.731 61.111 0.00 0.00 44.36 3.41
683 868 2.892425 CGGTCGGCTGAAGCATCC 60.892 66.667 0.00 0.00 44.36 3.51
684 869 2.167861 GTCGGTCGGCTGAAGCATC 61.168 63.158 0.00 0.00 44.36 3.91
685 870 2.125512 GTCGGTCGGCTGAAGCAT 60.126 61.111 0.00 0.00 44.36 3.79
686 871 4.373116 GGTCGGTCGGCTGAAGCA 62.373 66.667 0.00 0.00 44.36 3.91
688 873 2.725203 TTTGGGTCGGTCGGCTGAAG 62.725 60.000 0.00 0.00 0.00 3.02
689 874 2.809307 TTTGGGTCGGTCGGCTGAA 61.809 57.895 0.00 0.00 0.00 3.02
690 875 3.235481 TTTGGGTCGGTCGGCTGA 61.235 61.111 0.00 0.00 0.00 4.26
691 876 3.047877 GTTTGGGTCGGTCGGCTG 61.048 66.667 0.00 0.00 0.00 4.85
692 877 4.675029 CGTTTGGGTCGGTCGGCT 62.675 66.667 0.00 0.00 0.00 5.52
694 879 1.947597 TATCCGTTTGGGTCGGTCGG 61.948 60.000 4.36 0.00 46.86 4.79
695 880 0.108709 TTATCCGTTTGGGTCGGTCG 60.109 55.000 4.36 0.00 46.86 4.79
696 881 2.097680 TTTATCCGTTTGGGTCGGTC 57.902 50.000 4.36 0.00 46.86 4.79
697 882 2.038820 TCTTTTATCCGTTTGGGTCGGT 59.961 45.455 4.36 0.00 46.86 4.69
699 884 2.093152 CGTCTTTTATCCGTTTGGGTCG 59.907 50.000 0.00 0.00 37.00 4.79
700 885 3.328505 TCGTCTTTTATCCGTTTGGGTC 58.671 45.455 0.00 0.00 37.00 4.46
701 886 3.405823 TCGTCTTTTATCCGTTTGGGT 57.594 42.857 0.00 0.00 37.00 4.51
702 887 3.499157 TGTTCGTCTTTTATCCGTTTGGG 59.501 43.478 0.00 0.00 35.24 4.12
703 888 4.735662 TGTTCGTCTTTTATCCGTTTGG 57.264 40.909 0.00 0.00 0.00 3.28
704 889 5.397240 GGTTTGTTCGTCTTTTATCCGTTTG 59.603 40.000 0.00 0.00 0.00 2.93
705 890 5.066246 TGGTTTGTTCGTCTTTTATCCGTTT 59.934 36.000 0.00 0.00 0.00 3.60
706 891 4.575645 TGGTTTGTTCGTCTTTTATCCGTT 59.424 37.500 0.00 0.00 0.00 4.44
707 892 4.024641 GTGGTTTGTTCGTCTTTTATCCGT 60.025 41.667 0.00 0.00 0.00 4.69
708 893 4.460505 GTGGTTTGTTCGTCTTTTATCCG 58.539 43.478 0.00 0.00 0.00 4.18
709 894 4.460505 CGTGGTTTGTTCGTCTTTTATCC 58.539 43.478 0.00 0.00 0.00 2.59
710 895 3.904234 GCGTGGTTTGTTCGTCTTTTATC 59.096 43.478 0.00 0.00 0.00 1.75
711 896 3.304190 GGCGTGGTTTGTTCGTCTTTTAT 60.304 43.478 0.00 0.00 0.00 1.40
712 897 2.031930 GGCGTGGTTTGTTCGTCTTTTA 59.968 45.455 0.00 0.00 0.00 1.52
713 898 1.202211 GGCGTGGTTTGTTCGTCTTTT 60.202 47.619 0.00 0.00 0.00 2.27
714 899 0.379316 GGCGTGGTTTGTTCGTCTTT 59.621 50.000 0.00 0.00 0.00 2.52
715 900 0.463116 AGGCGTGGTTTGTTCGTCTT 60.463 50.000 0.00 0.00 36.08 3.01
716 901 0.463116 AAGGCGTGGTTTGTTCGTCT 60.463 50.000 0.00 0.00 41.23 4.18
717 902 0.379316 AAAGGCGTGGTTTGTTCGTC 59.621 50.000 0.00 0.00 0.00 4.20
718 903 0.099791 CAAAGGCGTGGTTTGTTCGT 59.900 50.000 0.00 0.00 31.44 3.85
719 904 0.593773 CCAAAGGCGTGGTTTGTTCG 60.594 55.000 2.38 0.00 33.75 3.95
720 905 3.266282 CCAAAGGCGTGGTTTGTTC 57.734 52.632 2.38 0.00 33.75 3.18
727 912 0.744281 AACTTCAACCAAAGGCGTGG 59.256 50.000 8.52 8.52 44.92 4.94
728 913 1.838913 CAACTTCAACCAAAGGCGTG 58.161 50.000 0.00 0.00 0.00 5.34
729 914 0.102300 GCAACTTCAACCAAAGGCGT 59.898 50.000 0.00 0.00 0.00 5.68
730 915 0.385390 AGCAACTTCAACCAAAGGCG 59.615 50.000 0.00 0.00 0.00 5.52
731 916 2.602257 AAGCAACTTCAACCAAAGGC 57.398 45.000 0.00 0.00 0.00 4.35
732 917 5.901552 TCTAAAAGCAACTTCAACCAAAGG 58.098 37.500 0.00 0.00 0.00 3.11
733 918 6.795399 TCTCTAAAAGCAACTTCAACCAAAG 58.205 36.000 0.00 0.00 0.00 2.77
734 919 6.767524 TCTCTAAAAGCAACTTCAACCAAA 57.232 33.333 0.00 0.00 0.00 3.28
735 920 6.767524 TTCTCTAAAAGCAACTTCAACCAA 57.232 33.333 0.00 0.00 0.00 3.67
736 921 6.767524 TTTCTCTAAAAGCAACTTCAACCA 57.232 33.333 0.00 0.00 0.00 3.67
737 922 6.144563 GCATTTCTCTAAAAGCAACTTCAACC 59.855 38.462 0.00 0.00 38.76 3.77
738 923 6.697019 TGCATTTCTCTAAAAGCAACTTCAAC 59.303 34.615 0.00 0.00 43.97 3.18
739 924 6.804677 TGCATTTCTCTAAAAGCAACTTCAA 58.195 32.000 0.00 0.00 43.97 2.69
740 925 6.389830 TGCATTTCTCTAAAAGCAACTTCA 57.610 33.333 0.00 0.00 43.97 3.02
746 931 9.206870 CCTTTTAATTGCATTTCTCTAAAAGCA 57.793 29.630 15.32 0.00 44.91 3.91
747 932 9.208022 ACCTTTTAATTGCATTTCTCTAAAAGC 57.792 29.630 15.32 0.00 39.24 3.51
802 1009 0.102300 TGTCCGACATGATGGTAGCG 59.898 55.000 0.00 0.00 0.00 4.26
803 1010 2.205074 CTTGTCCGACATGATGGTAGC 58.795 52.381 8.41 0.00 0.00 3.58
805 1012 2.565391 ACACTTGTCCGACATGATGGTA 59.435 45.455 18.58 0.00 0.00 3.25
815 1022 0.885879 ATACGCTCACACTTGTCCGA 59.114 50.000 0.00 0.00 0.00 4.55
916 1124 3.820689 CAGTGAGAGTGAGAGAGAAACG 58.179 50.000 0.00 0.00 0.00 3.60
919 1127 2.819019 CAGCAGTGAGAGTGAGAGAGAA 59.181 50.000 0.00 0.00 0.00 2.87
920 1128 2.435422 CAGCAGTGAGAGTGAGAGAGA 58.565 52.381 0.00 0.00 0.00 3.10
923 1131 0.456482 CGCAGCAGTGAGAGTGAGAG 60.456 60.000 0.00 0.00 0.00 3.20
924 1132 1.583477 CGCAGCAGTGAGAGTGAGA 59.417 57.895 0.00 0.00 0.00 3.27
925 1133 4.165866 CGCAGCAGTGAGAGTGAG 57.834 61.111 0.00 0.00 0.00 3.51
962 1170 4.580580 CCAGGTTGGATTTTATAGGAGCAC 59.419 45.833 0.00 0.00 40.96 4.40
1007 1215 2.361567 GGAGGGCAATGGCTTTGGG 61.362 63.158 14.12 0.00 40.87 4.12
1013 1221 1.304381 TTGTGAGGAGGGCAATGGC 60.304 57.895 0.00 0.00 40.13 4.40
1035 1243 2.436824 GGCGGAGGGAAAGAGTGC 60.437 66.667 0.00 0.00 0.00 4.40
1037 1245 0.036875 CTTTGGCGGAGGGAAAGAGT 59.963 55.000 0.00 0.00 0.00 3.24
1038 1246 0.324943 TCTTTGGCGGAGGGAAAGAG 59.675 55.000 0.00 0.00 32.13 2.85
1041 1249 1.074248 GGTCTTTGGCGGAGGGAAA 59.926 57.895 0.00 0.00 0.00 3.13
1085 1293 4.783841 GCTGTGCTTCGCGCTTCG 62.784 66.667 5.56 0.00 40.03 3.79
1086 1294 4.783841 CGCTGTGCTTCGCGCTTC 62.784 66.667 5.56 0.00 43.01 3.86
1095 1303 3.883744 CTCCCGTTTCCGCTGTGCT 62.884 63.158 0.00 0.00 0.00 4.40
1103 1311 3.508840 CATGGCGCTCCCGTTTCC 61.509 66.667 7.64 0.00 35.87 3.13
1425 2148 1.608336 TGGTGGTCCCTGTACTCGG 60.608 63.158 0.00 0.00 0.00 4.63
1783 3034 0.172803 ATGTCTTCGCTACCACGGTC 59.827 55.000 0.00 0.00 0.00 4.79
1789 3040 1.132588 GATCGCATGTCTTCGCTACC 58.867 55.000 0.00 0.00 0.00 3.18
1814 3065 2.685380 CCCACCCGCTCTCCTTCT 60.685 66.667 0.00 0.00 0.00 2.85
1930 3190 5.760743 TGCAAAAAGCTACACATACTACACA 59.239 36.000 0.00 0.00 45.94 3.72
1938 3198 2.297033 CCCACTGCAAAAAGCTACACAT 59.703 45.455 0.00 0.00 45.94 3.21
1940 3200 1.602920 GCCCACTGCAAAAAGCTACAC 60.603 52.381 0.00 0.00 45.94 2.90
1941 3201 0.673437 GCCCACTGCAAAAAGCTACA 59.327 50.000 0.00 0.00 45.94 2.74
2253 3765 0.252479 AAGCGAGGGAGTAGACGAGA 59.748 55.000 0.00 0.00 0.00 4.04
2254 3766 1.064357 GAAAGCGAGGGAGTAGACGAG 59.936 57.143 0.00 0.00 0.00 4.18
2255 3767 1.093159 GAAAGCGAGGGAGTAGACGA 58.907 55.000 0.00 0.00 0.00 4.20
2256 3768 1.096416 AGAAAGCGAGGGAGTAGACG 58.904 55.000 0.00 0.00 0.00 4.18
2257 3769 4.715527 TTTAGAAAGCGAGGGAGTAGAC 57.284 45.455 0.00 0.00 0.00 2.59
2258 3770 8.701908 TTATATTTAGAAAGCGAGGGAGTAGA 57.298 34.615 0.00 0.00 0.00 2.59
2259 3771 9.930693 ATTTATATTTAGAAAGCGAGGGAGTAG 57.069 33.333 0.00 0.00 0.00 2.57
2260 3772 9.924650 GATTTATATTTAGAAAGCGAGGGAGTA 57.075 33.333 0.00 0.00 0.00 2.59
2261 3773 7.878644 GGATTTATATTTAGAAAGCGAGGGAGT 59.121 37.037 0.00 0.00 0.00 3.85
2262 3774 8.097662 AGGATTTATATTTAGAAAGCGAGGGAG 58.902 37.037 0.00 0.00 0.00 4.30
2263 3775 7.974504 AGGATTTATATTTAGAAAGCGAGGGA 58.025 34.615 0.00 0.00 0.00 4.20
2264 3776 8.622948 AAGGATTTATATTTAGAAAGCGAGGG 57.377 34.615 0.00 0.00 0.00 4.30
2436 3948 9.261035 ACTATGAATCTCCCATATAATTCGACT 57.739 33.333 0.00 0.00 32.09 4.18
2437 3949 9.877178 AACTATGAATCTCCCATATAATTCGAC 57.123 33.333 0.00 0.00 32.09 4.20
2468 3980 8.783833 TGATTGACCAAACAAAATGAAAGAAA 57.216 26.923 0.00 0.00 33.44 2.52
2469 3981 7.011295 GCTGATTGACCAAACAAAATGAAAGAA 59.989 33.333 0.00 0.00 33.44 2.52
2470 3982 6.479660 GCTGATTGACCAAACAAAATGAAAGA 59.520 34.615 0.00 0.00 33.44 2.52
2472 3984 6.111382 TGCTGATTGACCAAACAAAATGAAA 58.889 32.000 0.00 0.00 33.44 2.69
2475 3987 5.050634 CACTGCTGATTGACCAAACAAAATG 60.051 40.000 0.00 0.00 33.44 2.32
2482 3994 3.072330 TCCTACACTGCTGATTGACCAAA 59.928 43.478 0.00 0.00 0.00 3.28
2488 4000 5.687730 CGTATAACTCCTACACTGCTGATTG 59.312 44.000 0.00 0.00 0.00 2.67
2509 4021 9.309516 GGTAATTTTCATCTACAATGTCTCGTA 57.690 33.333 0.00 0.00 0.00 3.43
2511 4023 8.196802 TGGTAATTTTCATCTACAATGTCTCG 57.803 34.615 0.00 0.00 0.00 4.04
2528 4040 9.921637 TTTTCAGATAAGCGAATTTGGTAATTT 57.078 25.926 0.00 0.00 34.16 1.82
2562 4074 7.503902 AGCTAAACTTCCTCCCATAATTCAATC 59.496 37.037 0.00 0.00 0.00 2.67
2605 4148 4.450053 AGGGAGTACTAGCTAGTGTTACG 58.550 47.826 32.21 4.53 37.10 3.18
2620 4181 6.952358 ACATAAATATAAGAGCGGAGGGAGTA 59.048 38.462 0.00 0.00 0.00 2.59
2621 4182 5.780793 ACATAAATATAAGAGCGGAGGGAGT 59.219 40.000 0.00 0.00 0.00 3.85
2622 4183 6.071334 TCACATAAATATAAGAGCGGAGGGAG 60.071 42.308 0.00 0.00 0.00 4.30
2623 4184 5.778241 TCACATAAATATAAGAGCGGAGGGA 59.222 40.000 0.00 0.00 0.00 4.20
2624 4185 6.037786 TCACATAAATATAAGAGCGGAGGG 57.962 41.667 0.00 0.00 0.00 4.30
2625 4186 7.819415 TGAATCACATAAATATAAGAGCGGAGG 59.181 37.037 0.00 0.00 0.00 4.30
2626 4187 8.651588 GTGAATCACATAAATATAAGAGCGGAG 58.348 37.037 8.74 0.00 34.08 4.63
2627 4188 8.147704 TGTGAATCACATAAATATAAGAGCGGA 58.852 33.333 12.63 0.00 39.62 5.54
2628 4189 8.310406 TGTGAATCACATAAATATAAGAGCGG 57.690 34.615 12.63 0.00 39.62 5.52
2629 4190 9.196552 TCTGTGAATCACATAAATATAAGAGCG 57.803 33.333 17.10 0.05 43.71 5.03
2635 4196 9.159254 ACTCCCTCTGTGAATCACATAAATATA 57.841 33.333 17.10 0.00 43.71 0.86
2636 4197 8.038862 ACTCCCTCTGTGAATCACATAAATAT 57.961 34.615 17.10 0.00 43.71 1.28
2637 4198 7.437713 ACTCCCTCTGTGAATCACATAAATA 57.562 36.000 17.10 2.52 43.71 1.40
2638 4199 6.319048 ACTCCCTCTGTGAATCACATAAAT 57.681 37.500 17.10 0.00 43.71 1.40
2639 4200 5.762179 ACTCCCTCTGTGAATCACATAAA 57.238 39.130 17.10 4.96 43.71 1.40
2640 4201 5.958380 AGTACTCCCTCTGTGAATCACATAA 59.042 40.000 17.10 7.42 43.71 1.90
2641 4202 5.519808 AGTACTCCCTCTGTGAATCACATA 58.480 41.667 17.10 8.91 43.71 2.29
2642 4203 4.357325 AGTACTCCCTCTGTGAATCACAT 58.643 43.478 17.10 2.58 43.71 3.21
2643 4204 3.779444 AGTACTCCCTCTGTGAATCACA 58.221 45.455 15.88 15.88 42.45 3.58
2644 4205 4.339814 CCTAGTACTCCCTCTGTGAATCAC 59.660 50.000 6.41 6.41 34.56 3.06
2645 4206 4.537751 CCTAGTACTCCCTCTGTGAATCA 58.462 47.826 0.00 0.00 0.00 2.57
2646 4207 3.892588 CCCTAGTACTCCCTCTGTGAATC 59.107 52.174 0.00 0.00 0.00 2.52
2647 4208 3.272551 ACCCTAGTACTCCCTCTGTGAAT 59.727 47.826 0.00 0.00 0.00 2.57
2648 4209 2.653366 ACCCTAGTACTCCCTCTGTGAA 59.347 50.000 0.00 0.00 0.00 3.18
2649 4210 2.241685 GACCCTAGTACTCCCTCTGTGA 59.758 54.545 0.00 0.00 0.00 3.58
2650 4211 2.242708 AGACCCTAGTACTCCCTCTGTG 59.757 54.545 0.00 0.00 0.00 3.66
2651 4212 2.575713 AGACCCTAGTACTCCCTCTGT 58.424 52.381 0.00 0.00 0.00 3.41
2652 4213 3.073356 CCTAGACCCTAGTACTCCCTCTG 59.927 56.522 0.00 0.00 0.00 3.35
2653 4214 3.329277 CCTAGACCCTAGTACTCCCTCT 58.671 54.545 0.00 0.00 0.00 3.69
2654 4215 2.376181 CCCTAGACCCTAGTACTCCCTC 59.624 59.091 0.00 0.00 0.00 4.30
2655 4216 2.295086 ACCCTAGACCCTAGTACTCCCT 60.295 54.545 0.00 0.00 0.00 4.20
2656 4217 2.108075 GACCCTAGACCCTAGTACTCCC 59.892 59.091 0.00 0.00 0.00 4.30
2657 4218 2.108075 GGACCCTAGACCCTAGTACTCC 59.892 59.091 0.00 0.00 0.00 3.85
2658 4219 2.108075 GGGACCCTAGACCCTAGTACTC 59.892 59.091 2.09 0.00 43.90 2.59
2659 4220 2.142756 GGGACCCTAGACCCTAGTACT 58.857 57.143 2.09 0.00 43.90 2.73
2660 4221 2.673775 GGGACCCTAGACCCTAGTAC 57.326 60.000 2.09 0.00 43.90 2.73
2667 4228 1.591768 TGGAATTGGGACCCTAGACC 58.408 55.000 13.00 11.99 0.00 3.85
2668 4229 3.732048 TTTGGAATTGGGACCCTAGAC 57.268 47.619 13.00 2.47 0.00 2.59
2669 4230 3.920197 TCTTTTGGAATTGGGACCCTAGA 59.080 43.478 13.00 0.00 0.00 2.43
2670 4231 4.316025 TCTTTTGGAATTGGGACCCTAG 57.684 45.455 13.00 0.00 0.00 3.02
2681 4242 5.776716 TCTCCATCAGCTTTTCTTTTGGAAT 59.223 36.000 0.00 0.00 34.56 3.01
2734 4299 0.545548 GACTCCCAACCTCCTGTCCT 60.546 60.000 0.00 0.00 0.00 3.85
2737 4302 0.545548 GGAGACTCCCAACCTCCTGT 60.546 60.000 10.74 0.00 42.36 4.00
2798 4378 3.834813 CCCTAGCTAGATGCCTGTGATAA 59.165 47.826 22.70 0.00 44.23 1.75
3020 5467 6.353323 GCGGCTTTTAAATTTTAATATTGCGC 59.647 34.615 0.00 0.00 0.00 6.09
3041 5519 2.096481 TTTCTGTCGTTTCGTGCGGC 62.096 55.000 0.00 0.00 34.20 6.53
3065 5554 4.320935 GCCACCCACAGTTACAATACTTTG 60.321 45.833 0.00 0.00 38.86 2.77
3072 5561 0.259065 TTGGCCACCCACAGTTACAA 59.741 50.000 3.88 0.00 41.97 2.41
3097 5602 2.178273 CATCAGCGTCGACGTCCA 59.822 61.111 35.48 21.04 42.22 4.02
3098 5603 2.579787 CCATCAGCGTCGACGTCC 60.580 66.667 35.48 21.82 42.22 4.79
3110 5615 3.805928 AGGACGTCCTTGCCATCA 58.194 55.556 31.69 0.00 46.09 3.07
3119 5624 2.829458 CTCTCCCCGAGGACGTCC 60.829 72.222 27.67 27.67 37.19 4.79
3306 5811 2.055689 TTGGGTGGACAGGACAGCAG 62.056 60.000 0.00 0.00 38.04 4.24
3310 5815 1.282653 TGGTTTGGGTGGACAGGACA 61.283 55.000 0.00 0.00 0.00 4.02
3366 5871 4.662961 CGCACCTCACCGCAGTCA 62.663 66.667 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.