Multiple sequence alignment - TraesCS2D01G375800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G375800 chr2D 100.000 4216 0 0 1 4216 480166385 480162170 0.000000e+00 7786.0
1 TraesCS2D01G375800 chr2D 90.643 513 48 0 1107 1619 651321323 651320811 0.000000e+00 682.0
2 TraesCS2D01G375800 chr2D 89.344 366 36 1 3462 3824 480138972 480138607 1.380000e-124 457.0
3 TraesCS2D01G375800 chr2D 89.055 201 17 3 4016 4214 480138382 480138185 1.170000e-60 244.0
4 TraesCS2D01G375800 chr2D 91.908 173 12 2 3063 3235 526525122 526524952 1.510000e-59 241.0
5 TraesCS2D01G375800 chr2A 94.401 2411 103 17 1817 4216 622698743 622696354 0.000000e+00 3675.0
6 TraesCS2D01G375800 chr2A 92.615 975 38 8 876 1818 622699743 622698771 0.000000e+00 1371.0
7 TraesCS2D01G375800 chr2A 89.891 366 34 3 3462 3824 622463542 622463177 6.380000e-128 468.0
8 TraesCS2D01G375800 chr2A 89.500 200 18 2 4016 4214 622462915 622462718 2.520000e-62 250.0
9 TraesCS2D01G375800 chr2A 94.872 156 7 1 665 820 42796903 42796749 4.210000e-60 243.0
10 TraesCS2D01G375800 chr2A 90.323 124 4 1 547 662 622699857 622699734 5.640000e-34 156.0
11 TraesCS2D01G375800 chr2B 90.067 1792 80 41 876 2573 563030488 563028701 0.000000e+00 2233.0
12 TraesCS2D01G375800 chr2B 91.711 941 51 14 3286 4216 563027874 563026951 0.000000e+00 1280.0
13 TraesCS2D01G375800 chr2B 92.351 536 32 2 2529 3063 563028703 563028176 0.000000e+00 754.0
14 TraesCS2D01G375800 chr2B 87.657 478 55 2 3462 3935 562982403 562981926 1.710000e-153 553.0
15 TraesCS2D01G375800 chr2B 85.000 520 64 9 2 509 563031115 563030598 2.250000e-142 516.0
16 TraesCS2D01G375800 chr2B 90.000 200 17 2 4016 4214 562981772 562981575 5.410000e-64 255.0
17 TraesCS2D01G375800 chr2B 94.304 158 8 1 663 820 708205489 708205333 1.510000e-59 241.0
18 TraesCS2D01G375800 chr2B 90.805 174 12 4 3064 3235 769078169 769077998 3.280000e-56 230.0
19 TraesCS2D01G375800 chr2B 98.305 118 2 0 545 662 563030596 563030479 1.540000e-49 207.0
20 TraesCS2D01G375800 chr1A 88.409 509 51 5 1117 1619 525021546 525021040 1.300000e-169 606.0
21 TraesCS2D01G375800 chr4D 94.969 159 7 1 662 820 76602197 76602354 9.050000e-62 248.0
22 TraesCS2D01G375800 chr4A 94.969 159 7 1 662 820 589616223 589616066 9.050000e-62 248.0
23 TraesCS2D01G375800 chr4A 90.323 186 15 2 665 848 15810297 15810113 1.510000e-59 241.0
24 TraesCS2D01G375800 chr4A 93.023 43 0 3 821 861 110641425 110641466 4.550000e-05 60.2
25 TraesCS2D01G375800 chr5A 93.373 166 9 2 3064 3229 467400017 467400180 1.170000e-60 244.0
26 TraesCS2D01G375800 chr5A 94.872 156 8 0 665 820 689656864 689657019 1.170000e-60 244.0
27 TraesCS2D01G375800 chr5A 78.571 294 49 9 9 290 692177636 692177345 9.310000e-42 182.0
28 TraesCS2D01G375800 chr7D 94.872 156 7 1 665 820 211868474 211868320 4.210000e-60 243.0
29 TraesCS2D01G375800 chr7D 83.673 147 17 4 2 142 137610274 137610129 9.510000e-27 132.0
30 TraesCS2D01G375800 chr7D 87.719 57 4 3 816 871 3670594 3670648 3.520000e-06 63.9
31 TraesCS2D01G375800 chr3A 89.947 189 13 2 665 848 24052365 24052178 5.450000e-59 239.0
32 TraesCS2D01G375800 chr3A 91.176 102 9 0 1117 1218 621837672 621837773 5.680000e-29 139.0
33 TraesCS2D01G375800 chr5D 92.216 167 11 2 3064 3230 322370166 322370002 7.050000e-58 235.0
34 TraesCS2D01G375800 chr6A 90.055 181 16 2 3056 3235 97802515 97802694 2.530000e-57 233.0
35 TraesCS2D01G375800 chr1B 90.055 181 17 1 665 845 393541380 393541559 2.530000e-57 233.0
36 TraesCS2D01G375800 chr7A 90.449 178 10 5 3055 3229 580506695 580506868 1.180000e-55 228.0
37 TraesCS2D01G375800 chr7A 93.478 46 3 0 5 50 103106307 103106352 7.560000e-08 69.4
38 TraesCS2D01G375800 chr5B 91.124 169 13 2 3064 3232 294096604 294096438 1.180000e-55 228.0
39 TraesCS2D01G375800 chr5B 93.182 44 0 3 821 862 626103715 626103757 1.270000e-05 62.1
40 TraesCS2D01G375800 chr5B 92.857 42 1 2 821 861 649498081 649498121 4.550000e-05 60.2
41 TraesCS2D01G375800 chr3D 90.341 176 13 4 3055 3229 473420825 473420997 1.180000e-55 228.0
42 TraesCS2D01G375800 chrUn 83.673 147 17 4 2 142 91676474 91676329 9.510000e-27 132.0
43 TraesCS2D01G375800 chrUn 83.673 147 17 4 2 142 441249731 441249876 9.510000e-27 132.0
44 TraesCS2D01G375800 chr1D 93.023 43 0 3 821 861 487807268 487807227 4.550000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G375800 chr2D 480162170 480166385 4215 True 7786.0 7786 100.000000 1 4216 1 chr2D.!!$R1 4215
1 TraesCS2D01G375800 chr2D 651320811 651321323 512 True 682.0 682 90.643000 1107 1619 1 chr2D.!!$R3 512
2 TraesCS2D01G375800 chr2D 480138185 480138972 787 True 350.5 457 89.199500 3462 4214 2 chr2D.!!$R4 752
3 TraesCS2D01G375800 chr2A 622696354 622699857 3503 True 1734.0 3675 92.446333 547 4216 3 chr2A.!!$R3 3669
4 TraesCS2D01G375800 chr2A 622462718 622463542 824 True 359.0 468 89.695500 3462 4214 2 chr2A.!!$R2 752
5 TraesCS2D01G375800 chr2B 563026951 563031115 4164 True 998.0 2233 91.486800 2 4216 5 chr2B.!!$R4 4214
6 TraesCS2D01G375800 chr2B 562981575 562982403 828 True 404.0 553 88.828500 3462 4214 2 chr2B.!!$R3 752
7 TraesCS2D01G375800 chr1A 525021040 525021546 506 True 606.0 606 88.409000 1117 1619 1 chr1A.!!$R1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 760 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.00 0.00 0.00 4.73 F
802 820 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.0 17.16 17.16 37.52 3.13 F
810 828 0.169672 GGAGACGTTTCCATCGACGA 59.830 55.0 19.71 0.00 41.53 4.20 F
859 877 0.179084 ATGCGCGTATTACTGGTGCT 60.179 50.0 8.43 0.00 38.00 4.40 F
860 878 0.390603 TGCGCGTATTACTGGTGCTT 60.391 50.0 8.43 0.00 38.00 3.91 F
1479 1535 0.621082 TTGGCGTGGTGATGGGAATA 59.379 50.0 0.00 0.00 0.00 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1853 1958 1.003355 CGGTGCAGACATCCAACCT 60.003 57.895 0.0 0.0 0.00 3.50 R
2758 2936 1.675641 GATGACCAAAGGTGCCGCT 60.676 57.895 0.0 0.0 35.25 5.52 R
2828 3006 4.344978 ACTACTGTGTTCATCCTAGCTGA 58.655 43.478 0.0 0.0 0.00 4.26 R
2913 3092 2.361104 GCCCGAAGCATTCCACCA 60.361 61.111 0.0 0.0 43.81 4.17 R
2951 3130 2.014857 GGAGGATTTAGCCCGTTTGTC 58.985 52.381 0.0 0.0 0.00 3.18 R
3534 3837 0.463620 GATGCTGTGGAGAGGAGGAC 59.536 60.000 0.0 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.873746 AGAAGAATCTTCGTCTCCACAA 57.126 40.909 16.35 0.00 41.15 3.33
63 64 0.396417 CTCCACAAAACCACCACCCA 60.396 55.000 0.00 0.00 0.00 4.51
64 65 0.263172 TCCACAAAACCACCACCCAT 59.737 50.000 0.00 0.00 0.00 4.00
111 112 2.229302 GTCGACCTCCAGATACCATAGC 59.771 54.545 3.51 0.00 0.00 2.97
128 129 2.579201 CCCGCACCTCAACGAGAT 59.421 61.111 0.00 0.00 0.00 2.75
131 132 1.215382 CGCACCTCAACGAGATCCA 59.785 57.895 0.00 0.00 0.00 3.41
140 148 2.844839 CGAGATCCAGGGACCCCC 60.845 72.222 7.00 0.00 45.90 5.40
159 167 1.439644 CTGGCTCCTAGACGAAGGC 59.560 63.158 0.00 0.00 36.51 4.35
161 169 0.902984 TGGCTCCTAGACGAAGGCAA 60.903 55.000 7.75 0.00 41.91 4.52
164 172 1.204941 GCTCCTAGACGAAGGCAAGAA 59.795 52.381 0.00 0.00 36.51 2.52
173 181 0.955919 GAAGGCAAGAACCCCGTCTG 60.956 60.000 0.00 0.00 0.00 3.51
177 185 1.374252 CAAGAACCCCGTCTGACCG 60.374 63.158 1.55 0.00 0.00 4.79
179 187 0.540365 AAGAACCCCGTCTGACCGTA 60.540 55.000 1.55 0.00 0.00 4.02
186 194 1.055338 CCGTCTGACCGTAAACGAAC 58.945 55.000 3.65 0.00 43.02 3.95
188 196 1.335324 CGTCTGACCGTAAACGAACCT 60.335 52.381 3.65 0.00 43.02 3.50
189 197 2.747436 GTCTGACCGTAAACGAACCTT 58.253 47.619 3.65 0.00 43.02 3.50
193 201 2.064014 GACCGTAAACGAACCTTGGAG 58.936 52.381 3.65 0.00 43.02 3.86
207 215 6.128526 CGAACCTTGGAGAAACTTATTCAGAC 60.129 42.308 0.00 0.00 0.00 3.51
211 219 2.029365 GGAGAAACTTATTCAGACGCGC 59.971 50.000 5.73 0.00 0.00 6.86
214 222 1.693083 AACTTATTCAGACGCGCCGC 61.693 55.000 5.73 0.00 0.00 6.53
216 224 1.812214 CTTATTCAGACGCGCCGCTC 61.812 60.000 5.73 3.85 0.00 5.03
253 261 0.831307 GCGACTCCCTCAACCCTAAT 59.169 55.000 0.00 0.00 0.00 1.73
270 278 5.364157 ACCCTAATCCTACTGAGAACACATC 59.636 44.000 0.00 0.00 0.00 3.06
278 286 2.300152 ACTGAGAACACATCGGACACAT 59.700 45.455 0.00 0.00 0.00 3.21
279 287 3.509967 ACTGAGAACACATCGGACACATA 59.490 43.478 0.00 0.00 0.00 2.29
283 291 4.938080 AGAACACATCGGACACATAGATC 58.062 43.478 0.00 0.00 0.00 2.75
284 292 4.646945 AGAACACATCGGACACATAGATCT 59.353 41.667 0.00 0.00 0.00 2.75
290 298 3.215151 TCGGACACATAGATCTGAGGTC 58.785 50.000 5.18 7.68 0.00 3.85
333 343 1.477295 GTTGACGTAGGGAGAGGGAAG 59.523 57.143 0.00 0.00 0.00 3.46
400 410 2.703007 GAGATCATCTGGCTAACCACCT 59.297 50.000 0.00 0.00 42.67 4.00
424 434 2.213575 GCTCGAAGCGTTATTGTCTACG 59.786 50.000 0.00 0.00 40.55 3.51
425 435 2.782192 CTCGAAGCGTTATTGTCTACGG 59.218 50.000 0.00 0.00 38.17 4.02
428 438 1.922570 AGCGTTATTGTCTACGGCAG 58.077 50.000 0.00 0.00 38.17 4.85
433 443 3.303495 CGTTATTGTCTACGGCAGAACTG 59.697 47.826 0.00 0.00 34.17 3.16
443 453 1.226746 GGCAGAACTGTGCGTAAGTT 58.773 50.000 3.77 0.00 45.00 2.66
446 456 3.120649 GGCAGAACTGTGCGTAAGTTTAG 60.121 47.826 3.77 0.00 45.00 1.85
449 459 4.150098 CAGAACTGTGCGTAAGTTTAGGAC 59.850 45.833 0.70 0.00 37.98 3.85
464 474 7.020827 AGTTTAGGACTTGAATTCTGATGGA 57.979 36.000 7.05 0.00 33.92 3.41
466 476 6.627087 TTAGGACTTGAATTCTGATGGACT 57.373 37.500 7.05 0.00 0.00 3.85
467 477 4.841422 AGGACTTGAATTCTGATGGACTG 58.159 43.478 7.05 0.00 0.00 3.51
469 479 5.013495 AGGACTTGAATTCTGATGGACTGAA 59.987 40.000 7.05 0.00 39.88 3.02
470 480 5.707298 GGACTTGAATTCTGATGGACTGAAA 59.293 40.000 7.05 0.00 39.25 2.69
477 487 7.121168 TGAATTCTGATGGACTGAAAATACCAC 59.879 37.037 7.05 0.00 39.25 4.16
484 494 4.254492 GGACTGAAAATACCACTGTCCTC 58.746 47.826 0.00 0.00 43.90 3.71
485 495 4.262894 GGACTGAAAATACCACTGTCCTCA 60.263 45.833 0.00 0.00 43.90 3.86
490 500 6.774673 TGAAAATACCACTGTCCTCATAACA 58.225 36.000 0.00 0.00 0.00 2.41
493 503 8.650143 AAAATACCACTGTCCTCATAACAATT 57.350 30.769 0.00 0.00 0.00 2.32
499 509 6.878923 CCACTGTCCTCATAACAATTCAACTA 59.121 38.462 0.00 0.00 0.00 2.24
500 510 7.554118 CCACTGTCCTCATAACAATTCAACTAT 59.446 37.037 0.00 0.00 0.00 2.12
501 511 9.599866 CACTGTCCTCATAACAATTCAACTATA 57.400 33.333 0.00 0.00 0.00 1.31
512 522 7.566760 ACAATTCAACTATATTGATTCGCCA 57.433 32.000 0.00 0.00 36.03 5.69
513 523 8.169977 ACAATTCAACTATATTGATTCGCCAT 57.830 30.769 0.00 0.00 36.03 4.40
514 524 8.077991 ACAATTCAACTATATTGATTCGCCATG 58.922 33.333 0.00 0.00 36.03 3.66
515 525 7.984422 ATTCAACTATATTGATTCGCCATGA 57.016 32.000 0.00 0.00 0.00 3.07
516 526 7.800155 TTCAACTATATTGATTCGCCATGAA 57.200 32.000 0.00 0.00 41.81 2.57
526 536 2.987413 TCGCCATGAATGTTGTTGAC 57.013 45.000 0.00 0.00 0.00 3.18
527 537 2.225467 TCGCCATGAATGTTGTTGACA 58.775 42.857 0.00 0.00 43.71 3.58
528 538 2.620585 TCGCCATGAATGTTGTTGACAA 59.379 40.909 0.00 0.00 42.62 3.18
529 539 6.299703 ATTCGCCATGAATGTTGTTGACAAC 61.300 40.000 17.71 17.71 45.60 3.32
539 549 3.314307 TTGTTGACAACCCATACCCAA 57.686 42.857 15.59 0.00 0.00 4.12
540 550 3.314307 TGTTGACAACCCATACCCAAA 57.686 42.857 15.59 0.00 0.00 3.28
541 551 3.643237 TGTTGACAACCCATACCCAAAA 58.357 40.909 15.59 0.00 0.00 2.44
542 552 3.639094 TGTTGACAACCCATACCCAAAAG 59.361 43.478 15.59 0.00 0.00 2.27
543 553 2.883026 TGACAACCCATACCCAAAAGG 58.117 47.619 0.00 0.00 43.78 3.11
652 670 4.950050 ACTGATCATTATGTCGACCCTTC 58.050 43.478 14.12 1.35 0.00 3.46
653 671 4.651503 ACTGATCATTATGTCGACCCTTCT 59.348 41.667 14.12 0.00 0.00 2.85
654 672 4.948847 TGATCATTATGTCGACCCTTCTG 58.051 43.478 14.12 4.61 0.00 3.02
655 673 4.649218 TGATCATTATGTCGACCCTTCTGA 59.351 41.667 14.12 9.89 0.00 3.27
656 674 5.128663 TGATCATTATGTCGACCCTTCTGAA 59.871 40.000 14.12 0.00 0.00 3.02
657 675 5.414789 TCATTATGTCGACCCTTCTGAAA 57.585 39.130 14.12 0.00 0.00 2.69
658 676 5.419542 TCATTATGTCGACCCTTCTGAAAG 58.580 41.667 14.12 0.00 0.00 2.62
659 677 4.884668 TTATGTCGACCCTTCTGAAAGT 57.115 40.909 14.12 0.00 33.76 2.66
660 678 3.771577 ATGTCGACCCTTCTGAAAGTT 57.228 42.857 14.12 0.00 33.76 2.66
661 679 3.553828 TGTCGACCCTTCTGAAAGTTT 57.446 42.857 14.12 0.00 33.76 2.66
662 680 3.202906 TGTCGACCCTTCTGAAAGTTTG 58.797 45.455 14.12 0.00 33.76 2.93
663 681 3.203716 GTCGACCCTTCTGAAAGTTTGT 58.796 45.455 3.51 0.00 33.76 2.83
664 682 3.002348 GTCGACCCTTCTGAAAGTTTGTG 59.998 47.826 3.51 0.00 33.76 3.33
665 683 3.118555 TCGACCCTTCTGAAAGTTTGTGA 60.119 43.478 0.00 0.00 33.76 3.58
666 684 3.625764 CGACCCTTCTGAAAGTTTGTGAA 59.374 43.478 0.00 0.00 33.76 3.18
667 685 4.275936 CGACCCTTCTGAAAGTTTGTGAAT 59.724 41.667 0.00 0.00 33.76 2.57
668 686 5.221048 CGACCCTTCTGAAAGTTTGTGAATT 60.221 40.000 0.00 0.00 33.76 2.17
669 687 6.017440 CGACCCTTCTGAAAGTTTGTGAATTA 60.017 38.462 0.00 0.00 33.76 1.40
670 688 7.468084 CGACCCTTCTGAAAGTTTGTGAATTAA 60.468 37.037 0.00 0.00 33.76 1.40
671 689 7.489160 ACCCTTCTGAAAGTTTGTGAATTAAC 58.511 34.615 0.00 0.00 33.76 2.01
672 690 6.923508 CCCTTCTGAAAGTTTGTGAATTAACC 59.076 38.462 0.00 0.00 33.76 2.85
673 691 7.201911 CCCTTCTGAAAGTTTGTGAATTAACCT 60.202 37.037 0.00 0.00 33.76 3.50
674 692 7.649306 CCTTCTGAAAGTTTGTGAATTAACCTG 59.351 37.037 0.00 0.00 33.76 4.00
675 693 7.639113 TCTGAAAGTTTGTGAATTAACCTGT 57.361 32.000 0.00 0.00 33.76 4.00
676 694 7.479980 TCTGAAAGTTTGTGAATTAACCTGTG 58.520 34.615 0.00 0.00 33.76 3.66
677 695 6.568869 TGAAAGTTTGTGAATTAACCTGTGG 58.431 36.000 0.00 0.00 0.00 4.17
678 696 6.153680 TGAAAGTTTGTGAATTAACCTGTGGT 59.846 34.615 0.00 0.00 37.65 4.16
680 698 5.901552 AGTTTGTGAATTAACCTGTGGTTG 58.098 37.500 11.78 0.00 46.35 3.77
681 699 5.654650 AGTTTGTGAATTAACCTGTGGTTGA 59.345 36.000 11.78 4.44 46.35 3.18
682 700 5.766150 TTGTGAATTAACCTGTGGTTGAG 57.234 39.130 11.78 0.00 46.35 3.02
683 701 5.042463 TGTGAATTAACCTGTGGTTGAGA 57.958 39.130 11.78 0.00 46.35 3.27
684 702 5.630121 TGTGAATTAACCTGTGGTTGAGAT 58.370 37.500 11.78 1.72 46.35 2.75
685 703 5.473162 TGTGAATTAACCTGTGGTTGAGATG 59.527 40.000 11.78 0.00 46.35 2.90
686 704 5.009631 TGAATTAACCTGTGGTTGAGATGG 58.990 41.667 11.78 0.00 46.35 3.51
687 705 4.657814 ATTAACCTGTGGTTGAGATGGT 57.342 40.909 11.78 0.00 46.35 3.55
688 706 4.447138 TTAACCTGTGGTTGAGATGGTT 57.553 40.909 11.78 0.00 46.35 3.67
689 707 5.570205 TTAACCTGTGGTTGAGATGGTTA 57.430 39.130 11.78 0.00 46.35 2.85
690 708 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
691 709 3.248024 ACCTGTGGTTGAGATGGTTAGA 58.752 45.455 0.00 0.00 27.29 2.10
692 710 3.846588 ACCTGTGGTTGAGATGGTTAGAT 59.153 43.478 0.00 0.00 27.29 1.98
693 711 4.194640 CCTGTGGTTGAGATGGTTAGATG 58.805 47.826 0.00 0.00 0.00 2.90
694 712 4.194640 CTGTGGTTGAGATGGTTAGATGG 58.805 47.826 0.00 0.00 0.00 3.51
695 713 3.843619 TGTGGTTGAGATGGTTAGATGGA 59.156 43.478 0.00 0.00 0.00 3.41
696 714 4.192317 GTGGTTGAGATGGTTAGATGGAC 58.808 47.826 0.00 0.00 0.00 4.02
697 715 3.843619 TGGTTGAGATGGTTAGATGGACA 59.156 43.478 0.00 0.00 0.00 4.02
698 716 4.080919 TGGTTGAGATGGTTAGATGGACAG 60.081 45.833 0.00 0.00 0.00 3.51
699 717 4.080863 GGTTGAGATGGTTAGATGGACAGT 60.081 45.833 0.00 0.00 0.00 3.55
700 718 4.743057 TGAGATGGTTAGATGGACAGTG 57.257 45.455 0.00 0.00 0.00 3.66
701 719 3.452264 TGAGATGGTTAGATGGACAGTGG 59.548 47.826 0.00 0.00 0.00 4.00
702 720 3.452627 GAGATGGTTAGATGGACAGTGGT 59.547 47.826 0.00 0.00 0.00 4.16
703 721 4.620723 AGATGGTTAGATGGACAGTGGTA 58.379 43.478 0.00 0.00 0.00 3.25
704 722 5.219739 AGATGGTTAGATGGACAGTGGTAT 58.780 41.667 0.00 0.00 0.00 2.73
705 723 5.667626 AGATGGTTAGATGGACAGTGGTATT 59.332 40.000 0.00 0.00 0.00 1.89
706 724 5.353394 TGGTTAGATGGACAGTGGTATTC 57.647 43.478 0.00 0.00 0.00 1.75
707 725 4.163458 TGGTTAGATGGACAGTGGTATTCC 59.837 45.833 0.00 0.00 0.00 3.01
708 726 4.444449 GGTTAGATGGACAGTGGTATTCCC 60.444 50.000 0.00 0.00 0.00 3.97
709 727 2.845659 AGATGGACAGTGGTATTCCCA 58.154 47.619 0.00 0.00 42.51 4.37
718 736 1.158904 TGGTATTCCCAAACCCACCA 58.841 50.000 0.00 0.00 41.50 4.17
719 737 1.076350 TGGTATTCCCAAACCCACCAG 59.924 52.381 0.00 0.00 41.50 4.00
720 738 1.618616 GGTATTCCCAAACCCACCAGG 60.619 57.143 0.00 0.00 43.78 4.45
736 754 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
737 755 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
738 756 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
739 757 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
740 758 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
741 759 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
742 760 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
743 761 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
744 762 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
745 763 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
746 764 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
747 765 2.418368 TCCTGGTGCTCGCATTATTT 57.582 45.000 0.00 0.00 0.00 1.40
748 766 2.722094 TCCTGGTGCTCGCATTATTTT 58.278 42.857 0.00 0.00 0.00 1.82
749 767 3.088532 TCCTGGTGCTCGCATTATTTTT 58.911 40.909 0.00 0.00 0.00 1.94
750 768 3.119531 TCCTGGTGCTCGCATTATTTTTG 60.120 43.478 0.00 0.00 0.00 2.44
751 769 3.181397 CTGGTGCTCGCATTATTTTTGG 58.819 45.455 0.00 0.00 0.00 3.28
752 770 2.822561 TGGTGCTCGCATTATTTTTGGA 59.177 40.909 0.00 0.00 0.00 3.53
753 771 3.446873 TGGTGCTCGCATTATTTTTGGAT 59.553 39.130 0.00 0.00 0.00 3.41
754 772 4.081752 TGGTGCTCGCATTATTTTTGGATT 60.082 37.500 0.00 0.00 0.00 3.01
755 773 4.869861 GGTGCTCGCATTATTTTTGGATTT 59.130 37.500 0.00 0.00 0.00 2.17
756 774 6.039616 GGTGCTCGCATTATTTTTGGATTTA 58.960 36.000 0.00 0.00 0.00 1.40
757 775 6.701400 GGTGCTCGCATTATTTTTGGATTTAT 59.299 34.615 0.00 0.00 0.00 1.40
758 776 7.224557 GGTGCTCGCATTATTTTTGGATTTATT 59.775 33.333 0.00 0.00 0.00 1.40
759 777 8.603181 GTGCTCGCATTATTTTTGGATTTATTT 58.397 29.630 0.00 0.00 0.00 1.40
760 778 9.160496 TGCTCGCATTATTTTTGGATTTATTTT 57.840 25.926 0.00 0.00 0.00 1.82
771 789 9.660180 TTTTTGGATTTATTTTAGGATTTCCGG 57.340 29.630 0.00 0.00 42.08 5.14
772 790 6.399639 TGGATTTATTTTAGGATTTCCGGC 57.600 37.500 0.00 0.00 42.08 6.13
773 791 5.009210 TGGATTTATTTTAGGATTTCCGGCG 59.991 40.000 0.00 0.00 42.08 6.46
774 792 5.239963 GGATTTATTTTAGGATTTCCGGCGA 59.760 40.000 9.30 0.00 42.08 5.54
775 793 6.072119 GGATTTATTTTAGGATTTCCGGCGAT 60.072 38.462 9.30 0.00 42.08 4.58
776 794 5.682943 TTATTTTAGGATTTCCGGCGATG 57.317 39.130 9.30 0.00 42.08 3.84
777 795 1.305201 TTTAGGATTTCCGGCGATGC 58.695 50.000 9.30 0.00 42.08 3.91
778 796 0.878523 TTAGGATTTCCGGCGATGCG 60.879 55.000 9.30 0.00 42.08 4.73
789 807 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
790 808 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
791 809 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
792 810 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
793 811 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
794 812 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
795 813 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
796 814 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
797 815 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
798 816 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
799 817 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
800 818 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
801 819 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
802 820 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
803 821 0.471211 AGTGGGAGGAGACGTTTCCA 60.471 55.000 25.51 4.24 39.84 3.53
804 822 0.613777 GTGGGAGGAGACGTTTCCAT 59.386 55.000 25.51 11.65 39.84 3.41
805 823 0.902531 TGGGAGGAGACGTTTCCATC 59.097 55.000 25.51 18.39 39.84 3.51
806 824 0.179108 GGGAGGAGACGTTTCCATCG 60.179 60.000 25.51 0.00 39.84 3.84
807 825 0.815734 GGAGGAGACGTTTCCATCGA 59.184 55.000 25.51 0.00 39.84 3.59
808 826 1.469423 GGAGGAGACGTTTCCATCGAC 60.469 57.143 25.51 11.46 39.84 4.20
809 827 0.170561 AGGAGACGTTTCCATCGACG 59.829 55.000 25.51 0.00 44.34 5.12
810 828 0.169672 GGAGACGTTTCCATCGACGA 59.830 55.000 19.71 0.00 41.53 4.20
811 829 1.257539 GAGACGTTTCCATCGACGAC 58.742 55.000 0.00 0.00 41.53 4.34
812 830 0.453950 AGACGTTTCCATCGACGACG 60.454 55.000 0.00 0.00 41.53 5.12
829 847 3.330853 GAGGCGCCGCGTTCATAG 61.331 66.667 23.20 0.00 0.00 2.23
830 848 4.891727 AGGCGCCGCGTTCATAGG 62.892 66.667 23.20 0.00 0.00 2.57
833 851 4.524318 CGCCGCGTTCATAGGGGT 62.524 66.667 4.92 0.00 42.84 4.95
834 852 2.895372 GCCGCGTTCATAGGGGTG 60.895 66.667 4.92 0.00 42.84 4.61
835 853 2.897207 CCGCGTTCATAGGGGTGA 59.103 61.111 4.92 0.00 37.00 4.02
836 854 1.227263 CCGCGTTCATAGGGGTGAG 60.227 63.158 4.92 0.00 37.00 3.51
837 855 1.515954 CGCGTTCATAGGGGTGAGT 59.484 57.895 0.00 0.00 0.00 3.41
838 856 0.806102 CGCGTTCATAGGGGTGAGTG 60.806 60.000 0.00 0.00 0.00 3.51
839 857 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
840 858 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
841 859 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
842 860 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
843 861 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
844 862 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
845 863 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
846 864 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
847 865 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
848 866 1.140161 GGGTGAGTGTATGCGCGTA 59.860 57.895 8.43 4.92 0.00 4.42
849 867 0.249322 GGGTGAGTGTATGCGCGTAT 60.249 55.000 15.52 15.52 0.00 3.06
850 868 1.567504 GGTGAGTGTATGCGCGTATT 58.432 50.000 16.54 0.00 0.00 1.89
851 869 2.544277 GGGTGAGTGTATGCGCGTATTA 60.544 50.000 16.54 2.09 0.00 0.98
852 870 2.470257 GGTGAGTGTATGCGCGTATTAC 59.530 50.000 16.54 14.72 0.00 1.89
853 871 3.369385 GTGAGTGTATGCGCGTATTACT 58.631 45.455 21.96 21.96 0.00 2.24
854 872 3.179795 GTGAGTGTATGCGCGTATTACTG 59.820 47.826 24.99 0.00 0.00 2.74
855 873 2.724690 GAGTGTATGCGCGTATTACTGG 59.275 50.000 24.99 0.00 0.00 4.00
856 874 2.100252 AGTGTATGCGCGTATTACTGGT 59.900 45.455 16.54 0.00 0.00 4.00
857 875 2.217847 GTGTATGCGCGTATTACTGGTG 59.782 50.000 16.54 0.00 0.00 4.17
858 876 1.191647 GTATGCGCGTATTACTGGTGC 59.808 52.381 16.54 0.00 37.67 5.01
859 877 0.179084 ATGCGCGTATTACTGGTGCT 60.179 50.000 8.43 0.00 38.00 4.40
860 878 0.390603 TGCGCGTATTACTGGTGCTT 60.391 50.000 8.43 0.00 38.00 3.91
861 879 1.135053 TGCGCGTATTACTGGTGCTTA 60.135 47.619 8.43 0.00 38.00 3.09
862 880 1.928503 GCGCGTATTACTGGTGCTTAA 59.071 47.619 8.43 0.00 34.52 1.85
863 881 2.349275 GCGCGTATTACTGGTGCTTAAA 59.651 45.455 8.43 0.00 34.52 1.52
864 882 3.181518 GCGCGTATTACTGGTGCTTAAAA 60.182 43.478 8.43 0.00 34.52 1.52
865 883 4.669708 GCGCGTATTACTGGTGCTTAAAAA 60.670 41.667 8.43 0.00 34.52 1.94
938 956 1.281899 GCGACGATTCTTTCCTCCAG 58.718 55.000 0.00 0.00 0.00 3.86
1479 1535 0.621082 TTGGCGTGGTGATGGGAATA 59.379 50.000 0.00 0.00 0.00 1.75
1537 1593 1.468054 GGATGCAGAAACCATGCGAAC 60.468 52.381 0.00 0.00 46.87 3.95
1680 1754 4.377943 CGCAATCAAACATGGACGACTAAA 60.378 41.667 0.00 0.00 0.00 1.85
1695 1769 7.977853 TGGACGACTAAAGATACTGAAATTACC 59.022 37.037 0.00 0.00 0.00 2.85
1717 1791 6.372104 ACCCTAGTAGTCTATACTGGGTTTC 58.628 44.000 14.12 0.00 42.49 2.78
1721 1795 8.361139 CCTAGTAGTCTATACTGGGTTTCATTG 58.639 40.741 8.77 0.00 40.15 2.82
1828 1933 7.063074 CGTTTGTAGGGTACTGACTTGATAAAG 59.937 40.741 0.00 0.00 0.00 1.85
1853 1958 3.913799 TGAAGGGAAGTAGGGAAATGTCA 59.086 43.478 0.00 0.00 0.00 3.58
1864 1969 2.755103 GGGAAATGTCAGGTTGGATGTC 59.245 50.000 0.00 0.00 0.00 3.06
1887 1992 4.776349 TGCACCGGATAAGTTGATAACAT 58.224 39.130 9.46 0.00 0.00 2.71
1906 2011 6.849588 AACATTGAAAAATGCTTGACTTCC 57.150 33.333 0.00 0.00 33.57 3.46
1973 2078 8.717821 TGTGTATTGCTTCTTGTTGATAACTAC 58.282 33.333 0.00 0.00 0.00 2.73
1974 2079 8.717821 GTGTATTGCTTCTTGTTGATAACTACA 58.282 33.333 0.00 0.00 0.00 2.74
2002 2107 6.969043 AGTCAACCACATTGGAATATAGGAA 58.031 36.000 0.00 0.00 40.96 3.36
2009 2114 7.893302 ACCACATTGGAATATAGGAAGTTGAAA 59.107 33.333 0.00 0.00 40.96 2.69
2110 2217 6.707599 AAAAGTACTACGACAGAGAAATGC 57.292 37.500 0.00 0.00 0.00 3.56
2210 2328 7.276218 CGGAACAATATCAAATGCATCAGTTTT 59.724 33.333 0.00 0.00 0.00 2.43
2510 2646 4.100653 TGATCCAAGTTCCTCTAGCATGAG 59.899 45.833 0.00 0.00 0.00 2.90
2663 2841 4.782019 TTCCCATTGAATGAAACCTTCG 57.218 40.909 6.76 0.00 0.00 3.79
2717 2895 2.223735 GCTGCAGGGTTCATGAATCATG 60.224 50.000 25.25 25.25 42.60 3.07
2828 3006 2.341846 AACAACATTCCACACCGAGT 57.658 45.000 0.00 0.00 0.00 4.18
2913 3092 3.843027 ACTTGAGATCAGAGTGGGATGTT 59.157 43.478 0.00 0.00 0.00 2.71
2935 3114 1.378514 GGAATGCTTCGGGCCTTCA 60.379 57.895 0.84 0.00 43.94 3.02
2951 3130 4.261614 GGCCTTCAGTAGTTTTGTTTCTGG 60.262 45.833 0.00 0.00 0.00 3.86
3085 3264 3.588569 ACTCCCTCCGCTTCCTAAATAT 58.411 45.455 0.00 0.00 0.00 1.28
3086 3265 4.748701 ACTCCCTCCGCTTCCTAAATATA 58.251 43.478 0.00 0.00 0.00 0.86
3140 3325 9.557338 GACTACATTTGGATGTATATAGACGAC 57.443 37.037 0.00 0.00 45.20 4.34
3176 3361 9.851686 ATAAGTTCACTCATTTTGCTCCATATA 57.148 29.630 0.00 0.00 0.00 0.86
3276 3571 4.767409 AGTACTGTCATTAGCTGTGAGTGA 59.233 41.667 0.00 0.00 0.00 3.41
3330 3625 1.728971 GTGGTTCATTCAGCTCACTCG 59.271 52.381 0.00 0.00 0.00 4.18
3418 3716 1.731160 CTGCTCCTTTTCTTGCTCTCG 59.269 52.381 0.00 0.00 0.00 4.04
3438 3736 3.123804 CGGGGTGATTCATTCGTCTTAG 58.876 50.000 0.00 0.00 0.00 2.18
3482 3782 0.523966 CTCCGTCAACGAGAGCTTCT 59.476 55.000 3.71 0.00 43.02 2.85
3548 3854 1.674651 CGTCGTCCTCCTCTCCACA 60.675 63.158 0.00 0.00 0.00 4.17
3551 3857 1.979155 CGTCCTCCTCTCCACAGCA 60.979 63.158 0.00 0.00 0.00 4.41
3615 3921 1.519455 CGAGACTGGATTGTCGGCC 60.519 63.158 0.00 0.00 41.47 6.13
3963 4338 6.760298 TGTATCTTCTCGGTACTGTACTACTG 59.240 42.308 16.79 0.00 0.00 2.74
4017 4392 3.103447 TCTTGTGACTGTCTCTTGCTG 57.897 47.619 9.51 0.00 0.00 4.41
4026 4401 1.135139 TGTCTCTTGCTGTCGGATAGC 59.865 52.381 18.52 18.52 41.49 2.97
4081 4501 2.918345 TTGTGCGCACTTGGGATGC 61.918 57.895 37.59 11.93 39.81 3.91
4193 4613 1.153823 GCAAAGCTGCTGCATGAGG 60.154 57.895 18.42 3.67 45.74 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.006746 GTCGGTATGATTTCCTGATGTTGTC 59.993 44.000 0.00 0.00 0.00 3.18
5 6 4.512944 CCTTGTCGGTATGATTTCCTGATG 59.487 45.833 0.00 0.00 0.00 3.07
7 8 3.772572 TCCTTGTCGGTATGATTTCCTGA 59.227 43.478 0.00 0.00 0.00 3.86
11 12 6.106673 TCTTCTTCCTTGTCGGTATGATTTC 58.893 40.000 0.00 0.00 0.00 2.17
51 52 1.228429 CACGGATGGGTGGTGGTTT 60.228 57.895 0.00 0.00 34.27 3.27
81 82 2.567497 GGAGGTCGACCGACACCAA 61.567 63.158 28.26 0.00 46.20 3.67
82 83 2.987547 GGAGGTCGACCGACACCA 60.988 66.667 28.26 0.00 46.20 4.17
83 84 2.987547 TGGAGGTCGACCGACACC 60.988 66.667 28.26 26.26 46.20 4.16
87 88 0.465097 GGTATCTGGAGGTCGACCGA 60.465 60.000 28.26 19.48 42.08 4.69
91 92 2.515854 GCTATGGTATCTGGAGGTCGA 58.484 52.381 0.00 0.00 0.00 4.20
93 94 1.903183 GGGCTATGGTATCTGGAGGTC 59.097 57.143 0.00 0.00 0.00 3.85
111 112 1.519455 GATCTCGTTGAGGTGCGGG 60.519 63.158 0.00 0.00 0.00 6.13
140 148 2.022240 GCCTTCGTCTAGGAGCCAGG 62.022 65.000 5.39 0.00 37.50 4.45
159 167 1.374252 CGGTCAGACGGGGTTCTTG 60.374 63.158 0.00 0.00 0.00 3.02
161 169 0.540365 TTACGGTCAGACGGGGTTCT 60.540 55.000 12.43 0.00 38.39 3.01
164 172 1.667722 GTTTACGGTCAGACGGGGT 59.332 57.895 12.43 4.71 38.39 4.95
173 181 2.064014 CTCCAAGGTTCGTTTACGGTC 58.936 52.381 2.09 0.00 40.29 4.79
177 185 5.746307 AAGTTTCTCCAAGGTTCGTTTAC 57.254 39.130 0.00 0.00 0.00 2.01
179 187 6.544564 TGAATAAGTTTCTCCAAGGTTCGTTT 59.455 34.615 0.00 0.00 0.00 3.60
186 194 4.093556 GCGTCTGAATAAGTTTCTCCAAGG 59.906 45.833 0.00 0.00 0.00 3.61
188 196 3.678072 CGCGTCTGAATAAGTTTCTCCAA 59.322 43.478 0.00 0.00 0.00 3.53
189 197 3.250744 CGCGTCTGAATAAGTTTCTCCA 58.749 45.455 0.00 0.00 0.00 3.86
193 201 1.266891 CGGCGCGTCTGAATAAGTTTC 60.267 52.381 9.90 0.00 0.00 2.78
235 243 1.413077 GGATTAGGGTTGAGGGAGTCG 59.587 57.143 0.00 0.00 0.00 4.18
253 261 2.753452 GTCCGATGTGTTCTCAGTAGGA 59.247 50.000 0.00 0.00 0.00 2.94
270 278 2.294791 GGACCTCAGATCTATGTGTCCG 59.705 54.545 13.80 0.00 35.27 4.79
301 309 3.426568 GTCAACCGCTCCAGCAGC 61.427 66.667 0.00 0.00 45.85 5.25
303 311 2.486636 CTACGTCAACCGCTCCAGCA 62.487 60.000 0.00 0.00 42.21 4.41
314 324 1.848652 CTTCCCTCTCCCTACGTCAA 58.151 55.000 0.00 0.00 0.00 3.18
365 375 1.424493 GATCTCAAGGCGAGCAACGG 61.424 60.000 5.57 0.00 41.98 4.44
367 377 1.596727 GATGATCTCAAGGCGAGCAAC 59.403 52.381 0.00 0.00 41.98 4.17
424 434 1.226746 AACTTACGCACAGTTCTGCC 58.773 50.000 0.00 0.00 33.18 4.85
425 435 3.120649 CCTAAACTTACGCACAGTTCTGC 60.121 47.826 0.00 0.00 33.12 4.26
428 438 4.304939 AGTCCTAAACTTACGCACAGTTC 58.695 43.478 0.00 0.00 33.03 3.01
433 443 5.857822 ATTCAAGTCCTAAACTTACGCAC 57.142 39.130 0.00 0.00 46.69 5.34
443 453 6.213397 TCAGTCCATCAGAATTCAAGTCCTAA 59.787 38.462 8.44 0.00 0.00 2.69
446 456 4.836825 TCAGTCCATCAGAATTCAAGTCC 58.163 43.478 8.44 0.00 0.00 3.85
449 459 8.186821 GGTATTTTCAGTCCATCAGAATTCAAG 58.813 37.037 8.44 0.00 0.00 3.02
453 463 7.121759 CAGTGGTATTTTCAGTCCATCAGAATT 59.878 37.037 0.00 0.00 32.45 2.17
462 472 4.254492 GAGGACAGTGGTATTTTCAGTCC 58.746 47.826 0.00 0.00 43.26 3.85
464 474 4.974645 TGAGGACAGTGGTATTTTCAGT 57.025 40.909 0.00 0.00 0.00 3.41
466 476 6.774673 TGTTATGAGGACAGTGGTATTTTCA 58.225 36.000 0.00 0.00 0.00 2.69
467 477 7.681939 TTGTTATGAGGACAGTGGTATTTTC 57.318 36.000 0.00 0.00 0.00 2.29
469 479 7.888021 TGAATTGTTATGAGGACAGTGGTATTT 59.112 33.333 0.00 0.00 0.00 1.40
470 480 7.402054 TGAATTGTTATGAGGACAGTGGTATT 58.598 34.615 0.00 0.00 0.00 1.89
490 500 8.394971 TCATGGCGAATCAATATAGTTGAATT 57.605 30.769 0.00 0.00 31.55 2.17
493 503 7.445096 ACATTCATGGCGAATCAATATAGTTGA 59.555 33.333 0.00 0.00 42.70 3.18
499 509 6.395426 ACAACATTCATGGCGAATCAATAT 57.605 33.333 0.00 0.00 42.70 1.28
500 510 5.833406 ACAACATTCATGGCGAATCAATA 57.167 34.783 0.00 0.00 42.70 1.90
501 511 4.724074 ACAACATTCATGGCGAATCAAT 57.276 36.364 0.00 0.00 42.70 2.57
502 512 4.022503 TCAACAACATTCATGGCGAATCAA 60.023 37.500 0.00 0.00 42.70 2.57
504 514 3.853671 GTCAACAACATTCATGGCGAATC 59.146 43.478 0.00 0.00 42.70 2.52
505 515 3.255395 TGTCAACAACATTCATGGCGAAT 59.745 39.130 0.00 0.00 45.60 3.34
506 516 2.620585 TGTCAACAACATTCATGGCGAA 59.379 40.909 0.00 0.00 38.22 4.70
508 518 2.702898 TGTCAACAACATTCATGGCG 57.297 45.000 0.00 0.00 31.20 5.69
518 528 8.843377 CCTTTTGGGTATGGGTTGTCAACAAC 62.843 46.154 17.29 15.94 44.42 3.32
519 529 3.314307 TTGGGTATGGGTTGTCAACAA 57.686 42.857 17.29 5.50 0.00 2.83
520 530 3.314307 TTTGGGTATGGGTTGTCAACA 57.686 42.857 17.29 0.00 0.00 3.33
521 531 3.006430 CCTTTTGGGTATGGGTTGTCAAC 59.994 47.826 7.20 7.20 35.46 3.18
522 532 3.117093 TCCTTTTGGGTATGGGTTGTCAA 60.117 43.478 0.00 0.00 40.87 3.18
523 533 2.447429 TCCTTTTGGGTATGGGTTGTCA 59.553 45.455 0.00 0.00 40.87 3.58
524 534 3.163616 TCCTTTTGGGTATGGGTTGTC 57.836 47.619 0.00 0.00 40.87 3.18
525 535 3.621682 TTCCTTTTGGGTATGGGTTGT 57.378 42.857 0.00 0.00 40.87 3.32
526 536 5.497464 AAATTCCTTTTGGGTATGGGTTG 57.503 39.130 0.00 0.00 40.87 3.77
527 537 7.293771 ACTTAAAATTCCTTTTGGGTATGGGTT 59.706 33.333 0.00 0.00 40.87 4.11
528 538 6.790461 ACTTAAAATTCCTTTTGGGTATGGGT 59.210 34.615 0.00 0.00 40.87 4.51
529 539 7.038658 TCACTTAAAATTCCTTTTGGGTATGGG 60.039 37.037 0.00 0.00 40.87 4.00
530 540 7.817478 GTCACTTAAAATTCCTTTTGGGTATGG 59.183 37.037 0.00 0.00 40.87 2.74
531 541 8.364142 TGTCACTTAAAATTCCTTTTGGGTATG 58.636 33.333 0.00 0.00 40.87 2.39
532 542 8.485578 TGTCACTTAAAATTCCTTTTGGGTAT 57.514 30.769 0.00 0.00 40.87 2.73
533 543 7.899648 TGTCACTTAAAATTCCTTTTGGGTA 57.100 32.000 0.00 0.00 40.87 3.69
534 544 6.800072 TGTCACTTAAAATTCCTTTTGGGT 57.200 33.333 0.00 0.00 40.87 4.51
535 545 7.496747 TCTTGTCACTTAAAATTCCTTTTGGG 58.503 34.615 0.00 0.00 40.87 4.12
536 546 8.940768 TTCTTGTCACTTAAAATTCCTTTTGG 57.059 30.769 0.00 0.00 36.09 3.28
537 547 9.034544 CCTTCTTGTCACTTAAAATTCCTTTTG 57.965 33.333 0.00 0.00 36.09 2.44
538 548 8.977412 TCCTTCTTGTCACTTAAAATTCCTTTT 58.023 29.630 0.00 0.00 38.17 2.27
539 549 8.533569 TCCTTCTTGTCACTTAAAATTCCTTT 57.466 30.769 0.00 0.00 0.00 3.11
540 550 8.414003 GTTCCTTCTTGTCACTTAAAATTCCTT 58.586 33.333 0.00 0.00 0.00 3.36
541 551 7.255139 CGTTCCTTCTTGTCACTTAAAATTCCT 60.255 37.037 0.00 0.00 0.00 3.36
542 552 6.856426 CGTTCCTTCTTGTCACTTAAAATTCC 59.144 38.462 0.00 0.00 0.00 3.01
543 553 7.415229 ACGTTCCTTCTTGTCACTTAAAATTC 58.585 34.615 0.00 0.00 0.00 2.17
652 670 6.697019 CCACAGGTTAATTCACAAACTTTCAG 59.303 38.462 0.00 0.00 0.00 3.02
653 671 6.153680 ACCACAGGTTAATTCACAAACTTTCA 59.846 34.615 0.00 0.00 27.29 2.69
654 672 6.569780 ACCACAGGTTAATTCACAAACTTTC 58.430 36.000 0.00 0.00 27.29 2.62
655 673 6.538945 ACCACAGGTTAATTCACAAACTTT 57.461 33.333 0.00 0.00 27.29 2.66
656 674 6.153680 TCAACCACAGGTTAATTCACAAACTT 59.846 34.615 0.40 0.00 45.01 2.66
657 675 5.654650 TCAACCACAGGTTAATTCACAAACT 59.345 36.000 0.40 0.00 45.01 2.66
658 676 5.897050 TCAACCACAGGTTAATTCACAAAC 58.103 37.500 0.40 0.00 45.01 2.93
659 677 5.888724 TCTCAACCACAGGTTAATTCACAAA 59.111 36.000 0.40 0.00 45.01 2.83
660 678 5.441500 TCTCAACCACAGGTTAATTCACAA 58.558 37.500 0.40 0.00 45.01 3.33
661 679 5.042463 TCTCAACCACAGGTTAATTCACA 57.958 39.130 0.40 0.00 45.01 3.58
662 680 5.106157 CCATCTCAACCACAGGTTAATTCAC 60.106 44.000 0.40 0.00 45.01 3.18
663 681 5.009631 CCATCTCAACCACAGGTTAATTCA 58.990 41.667 0.40 0.00 45.01 2.57
664 682 5.010282 ACCATCTCAACCACAGGTTAATTC 58.990 41.667 0.40 0.00 45.01 2.17
665 683 4.998051 ACCATCTCAACCACAGGTTAATT 58.002 39.130 0.40 0.00 45.01 1.40
666 684 4.657814 ACCATCTCAACCACAGGTTAAT 57.342 40.909 0.40 0.00 45.01 1.40
667 685 4.447138 AACCATCTCAACCACAGGTTAA 57.553 40.909 0.40 0.00 45.01 2.01
668 686 4.841813 TCTAACCATCTCAACCACAGGTTA 59.158 41.667 0.40 0.00 45.01 2.85
670 688 3.248024 TCTAACCATCTCAACCACAGGT 58.752 45.455 0.00 0.00 37.65 4.00
671 689 3.981071 TCTAACCATCTCAACCACAGG 57.019 47.619 0.00 0.00 0.00 4.00
672 690 4.080919 TCCATCTAACCATCTCAACCACAG 60.081 45.833 0.00 0.00 0.00 3.66
673 691 3.843619 TCCATCTAACCATCTCAACCACA 59.156 43.478 0.00 0.00 0.00 4.17
674 692 4.192317 GTCCATCTAACCATCTCAACCAC 58.808 47.826 0.00 0.00 0.00 4.16
675 693 3.843619 TGTCCATCTAACCATCTCAACCA 59.156 43.478 0.00 0.00 0.00 3.67
676 694 4.080863 ACTGTCCATCTAACCATCTCAACC 60.081 45.833 0.00 0.00 0.00 3.77
677 695 4.872691 CACTGTCCATCTAACCATCTCAAC 59.127 45.833 0.00 0.00 0.00 3.18
678 696 4.080919 CCACTGTCCATCTAACCATCTCAA 60.081 45.833 0.00 0.00 0.00 3.02
679 697 3.452264 CCACTGTCCATCTAACCATCTCA 59.548 47.826 0.00 0.00 0.00 3.27
680 698 3.452627 ACCACTGTCCATCTAACCATCTC 59.547 47.826 0.00 0.00 0.00 2.75
681 699 3.454858 ACCACTGTCCATCTAACCATCT 58.545 45.455 0.00 0.00 0.00 2.90
682 700 3.914426 ACCACTGTCCATCTAACCATC 57.086 47.619 0.00 0.00 0.00 3.51
683 701 5.163195 GGAATACCACTGTCCATCTAACCAT 60.163 44.000 0.00 0.00 35.97 3.55
684 702 4.163458 GGAATACCACTGTCCATCTAACCA 59.837 45.833 0.00 0.00 35.97 3.67
685 703 4.444449 GGGAATACCACTGTCCATCTAACC 60.444 50.000 0.00 0.00 39.85 2.85
686 704 4.163458 TGGGAATACCACTGTCCATCTAAC 59.837 45.833 0.00 0.00 46.80 2.34
687 705 4.367166 TGGGAATACCACTGTCCATCTAA 58.633 43.478 0.00 0.00 46.80 2.10
688 706 4.002256 TGGGAATACCACTGTCCATCTA 57.998 45.455 0.00 0.00 46.80 1.98
689 707 2.845659 TGGGAATACCACTGTCCATCT 58.154 47.619 0.00 0.00 46.80 2.90
700 718 1.618616 CCTGGTGGGTTTGGGAATACC 60.619 57.143 0.00 0.00 40.81 2.73
701 719 1.847328 CCTGGTGGGTTTGGGAATAC 58.153 55.000 0.00 0.00 0.00 1.89
713 731 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
718 736 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
719 737 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
720 738 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
721 739 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
722 740 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
723 741 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
724 742 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
725 743 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
726 744 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
727 745 2.645838 AATAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
728 746 2.418368 AAATAATGCGAGCACCAGGA 57.582 45.000 0.00 0.00 0.00 3.86
729 747 3.181397 CAAAAATAATGCGAGCACCAGG 58.819 45.455 0.00 0.00 0.00 4.45
730 748 3.119531 TCCAAAAATAATGCGAGCACCAG 60.120 43.478 0.00 0.00 0.00 4.00
731 749 2.822561 TCCAAAAATAATGCGAGCACCA 59.177 40.909 0.00 0.00 0.00 4.17
732 750 3.502191 TCCAAAAATAATGCGAGCACC 57.498 42.857 0.00 0.00 0.00 5.01
733 751 7.698836 ATAAATCCAAAAATAATGCGAGCAC 57.301 32.000 0.00 0.00 0.00 4.40
734 752 8.715191 AAATAAATCCAAAAATAATGCGAGCA 57.285 26.923 0.00 0.00 0.00 4.26
745 763 9.660180 CCGGAAATCCTAAAATAAATCCAAAAA 57.340 29.630 0.00 0.00 0.00 1.94
746 764 7.766738 GCCGGAAATCCTAAAATAAATCCAAAA 59.233 33.333 5.05 0.00 0.00 2.44
747 765 7.269316 GCCGGAAATCCTAAAATAAATCCAAA 58.731 34.615 5.05 0.00 0.00 3.28
748 766 6.460399 CGCCGGAAATCCTAAAATAAATCCAA 60.460 38.462 5.05 0.00 0.00 3.53
749 767 5.009210 CGCCGGAAATCCTAAAATAAATCCA 59.991 40.000 5.05 0.00 0.00 3.41
750 768 5.239963 TCGCCGGAAATCCTAAAATAAATCC 59.760 40.000 5.05 0.00 0.00 3.01
751 769 6.308371 TCGCCGGAAATCCTAAAATAAATC 57.692 37.500 5.05 0.00 0.00 2.17
752 770 6.677913 CATCGCCGGAAATCCTAAAATAAAT 58.322 36.000 5.05 0.00 0.00 1.40
753 771 5.506649 GCATCGCCGGAAATCCTAAAATAAA 60.507 40.000 5.05 0.00 0.00 1.40
754 772 4.023536 GCATCGCCGGAAATCCTAAAATAA 60.024 41.667 5.05 0.00 0.00 1.40
755 773 3.500680 GCATCGCCGGAAATCCTAAAATA 59.499 43.478 5.05 0.00 0.00 1.40
756 774 2.293399 GCATCGCCGGAAATCCTAAAAT 59.707 45.455 5.05 0.00 0.00 1.82
757 775 1.673920 GCATCGCCGGAAATCCTAAAA 59.326 47.619 5.05 0.00 0.00 1.52
758 776 1.305201 GCATCGCCGGAAATCCTAAA 58.695 50.000 5.05 0.00 0.00 1.85
759 777 0.878523 CGCATCGCCGGAAATCCTAA 60.879 55.000 5.05 0.00 0.00 2.69
760 778 1.300620 CGCATCGCCGGAAATCCTA 60.301 57.895 5.05 0.00 0.00 2.94
761 779 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
772 790 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
773 791 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
774 792 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
775 793 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
776 794 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
777 795 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
778 796 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
779 797 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
780 798 1.420430 AACGTCTCCTCCCACTGAAA 58.580 50.000 0.00 0.00 0.00 2.69
781 799 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
782 800 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
783 801 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
784 802 0.471211 TGGAAACGTCTCCTCCCACT 60.471 55.000 9.80 0.00 36.35 4.00
785 803 0.613777 ATGGAAACGTCTCCTCCCAC 59.386 55.000 9.80 0.00 36.35 4.61
786 804 0.902531 GATGGAAACGTCTCCTCCCA 59.097 55.000 9.80 1.52 43.31 4.37
787 805 0.179108 CGATGGAAACGTCTCCTCCC 60.179 60.000 9.80 0.00 44.51 4.30
788 806 0.815734 TCGATGGAAACGTCTCCTCC 59.184 55.000 9.80 4.35 44.51 4.30
789 807 1.794437 CGTCGATGGAAACGTCTCCTC 60.794 57.143 9.80 3.60 44.51 3.71
790 808 0.170561 CGTCGATGGAAACGTCTCCT 59.829 55.000 9.80 0.00 44.51 3.69
791 809 0.169672 TCGTCGATGGAAACGTCTCC 59.830 55.000 0.00 0.00 44.51 3.71
792 810 1.257539 GTCGTCGATGGAAACGTCTC 58.742 55.000 4.48 0.00 44.51 3.36
793 811 0.453950 CGTCGTCGATGGAAACGTCT 60.454 55.000 6.56 0.00 44.51 4.18
794 812 0.453282 TCGTCGTCGATGGAAACGTC 60.453 55.000 14.28 0.00 41.35 4.34
795 813 0.453950 CTCGTCGTCGATGGAAACGT 60.454 55.000 14.28 0.00 45.21 3.99
796 814 1.132199 CCTCGTCGTCGATGGAAACG 61.132 60.000 14.28 10.22 45.21 3.60
797 815 1.411493 GCCTCGTCGTCGATGGAAAC 61.411 60.000 14.28 0.00 45.21 2.78
798 816 1.153901 GCCTCGTCGTCGATGGAAA 60.154 57.895 14.28 0.00 45.21 3.13
799 817 2.488355 GCCTCGTCGTCGATGGAA 59.512 61.111 14.28 0.00 45.21 3.53
800 818 3.872728 CGCCTCGTCGTCGATGGA 61.873 66.667 14.28 6.69 45.21 3.41
812 830 3.330853 CTATGAACGCGGCGCCTC 61.331 66.667 27.87 22.57 0.00 4.70
813 831 4.891727 CCTATGAACGCGGCGCCT 62.892 66.667 27.87 14.25 0.00 5.52
816 834 4.524318 ACCCCTATGAACGCGGCG 62.524 66.667 22.36 22.36 0.00 6.46
817 835 2.895372 CACCCCTATGAACGCGGC 60.895 66.667 12.47 1.95 0.00 6.53
818 836 1.227263 CTCACCCCTATGAACGCGG 60.227 63.158 12.47 0.00 0.00 6.46
819 837 0.806102 CACTCACCCCTATGAACGCG 60.806 60.000 3.53 3.53 0.00 6.01
820 838 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
821 839 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
822 840 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
823 841 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
824 842 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
825 843 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
826 844 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
827 845 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
828 846 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
829 847 2.287457 TACGCGCATACACTCACCCC 62.287 60.000 5.73 0.00 0.00 4.95
830 848 0.249322 ATACGCGCATACACTCACCC 60.249 55.000 5.73 0.00 0.00 4.61
831 849 1.567504 AATACGCGCATACACTCACC 58.432 50.000 5.73 0.00 0.00 4.02
832 850 3.179795 CAGTAATACGCGCATACACTCAC 59.820 47.826 5.73 0.00 0.00 3.51
833 851 3.368495 CAGTAATACGCGCATACACTCA 58.632 45.455 5.73 0.00 0.00 3.41
834 852 2.724690 CCAGTAATACGCGCATACACTC 59.275 50.000 5.73 0.00 0.00 3.51
835 853 2.100252 ACCAGTAATACGCGCATACACT 59.900 45.455 5.73 3.10 0.00 3.55
836 854 2.217847 CACCAGTAATACGCGCATACAC 59.782 50.000 5.73 0.38 0.00 2.90
837 855 2.465855 CACCAGTAATACGCGCATACA 58.534 47.619 5.73 0.00 0.00 2.29
838 856 1.191647 GCACCAGTAATACGCGCATAC 59.808 52.381 5.73 7.26 0.00 2.39
839 857 1.067974 AGCACCAGTAATACGCGCATA 59.932 47.619 5.73 0.00 0.00 3.14
840 858 0.179084 AGCACCAGTAATACGCGCAT 60.179 50.000 5.73 0.00 0.00 4.73
841 859 0.390603 AAGCACCAGTAATACGCGCA 60.391 50.000 5.73 0.00 0.00 6.09
842 860 1.563111 TAAGCACCAGTAATACGCGC 58.437 50.000 5.73 0.00 0.00 6.86
843 861 4.587211 TTTTAAGCACCAGTAATACGCG 57.413 40.909 3.53 3.53 0.00 6.01
866 884 5.542635 GGGATAAAACTTCCAGGGTCTTTTT 59.457 40.000 0.00 0.00 34.77 1.94
867 885 5.084519 GGGATAAAACTTCCAGGGTCTTTT 58.915 41.667 0.00 0.00 34.77 2.27
868 886 4.510386 GGGGATAAAACTTCCAGGGTCTTT 60.510 45.833 0.00 0.00 34.77 2.52
869 887 3.011369 GGGGATAAAACTTCCAGGGTCTT 59.989 47.826 0.00 0.00 34.77 3.01
870 888 2.581246 GGGGATAAAACTTCCAGGGTCT 59.419 50.000 0.00 0.00 34.77 3.85
871 889 2.682858 CGGGGATAAAACTTCCAGGGTC 60.683 54.545 0.00 0.00 34.77 4.46
872 890 1.283905 CGGGGATAAAACTTCCAGGGT 59.716 52.381 0.00 0.00 34.77 4.34
873 891 2.022238 GCGGGGATAAAACTTCCAGGG 61.022 57.143 0.00 0.00 34.77 4.45
874 892 1.389555 GCGGGGATAAAACTTCCAGG 58.610 55.000 0.00 0.00 34.77 4.45
1187 1241 1.815421 ATGGGCTGATCGTTGTCGC 60.815 57.895 0.00 0.00 36.96 5.19
1537 1593 1.735198 CAGCCCAAGCACGCAATTG 60.735 57.895 0.00 0.00 43.56 2.32
1601 1661 1.574428 GGGCACAACACTAACGCAG 59.426 57.895 0.00 0.00 0.00 5.18
1695 1769 8.361139 CAATGAAACCCAGTATAGACTACTAGG 58.639 40.741 0.00 0.00 33.32 3.02
1778 1852 6.128172 CGGGATAAGAGAATTCATAATGCACC 60.128 42.308 8.44 0.37 0.00 5.01
1780 1854 6.533730 ACGGGATAAGAGAATTCATAATGCA 58.466 36.000 8.44 0.00 0.00 3.96
1828 1933 3.782656 TTTCCCTACTTCCCTTCACAC 57.217 47.619 0.00 0.00 0.00 3.82
1853 1958 1.003355 CGGTGCAGACATCCAACCT 60.003 57.895 0.00 0.00 0.00 3.50
1864 1969 4.188462 TGTTATCAACTTATCCGGTGCAG 58.812 43.478 0.00 0.00 0.00 4.41
1887 1992 4.810491 GCAAGGAAGTCAAGCATTTTTCAA 59.190 37.500 0.00 0.00 0.00 2.69
1946 2051 8.340618 AGTTATCAACAAGAAGCAATACACAT 57.659 30.769 0.00 0.00 0.00 3.21
1973 2078 5.902613 ATTCCAATGTGGTTGACTATGTG 57.097 39.130 0.00 0.00 40.37 3.21
1974 2079 7.939039 CCTATATTCCAATGTGGTTGACTATGT 59.061 37.037 0.00 0.00 40.37 2.29
2002 2107 4.104383 TCCCAGATTTCAGCTTTCAACT 57.896 40.909 0.00 0.00 0.00 3.16
2009 2114 2.758979 CTGCAATTCCCAGATTTCAGCT 59.241 45.455 0.00 0.00 32.03 4.24
2321 2447 8.469200 CAAATGAATTCCAACAGAAATAGGCTA 58.531 33.333 2.27 0.00 38.21 3.93
2335 2461 4.523943 AGTTGCTAGCACAAATGAATTCCA 59.476 37.500 19.17 0.00 0.00 3.53
2391 2518 9.311916 CTTTCACCTTTCAGAAGATCTATGTAG 57.688 37.037 0.00 1.55 34.71 2.74
2510 2646 4.235360 ACATGTACGAGACTTTGCAGTAC 58.765 43.478 0.00 3.83 38.40 2.73
2663 2841 4.374607 GCGAAACAAATTAAACAAGGCGTC 60.375 41.667 0.00 0.00 0.00 5.19
2717 2895 6.452494 TGTTCCTATGCTACTCAAGTACTC 57.548 41.667 0.00 0.00 0.00 2.59
2718 2896 6.852420 TTGTTCCTATGCTACTCAAGTACT 57.148 37.500 0.00 0.00 0.00 2.73
2719 2897 7.063544 CACTTTGTTCCTATGCTACTCAAGTAC 59.936 40.741 0.00 0.00 0.00 2.73
2720 2898 7.039293 TCACTTTGTTCCTATGCTACTCAAGTA 60.039 37.037 0.00 0.00 0.00 2.24
2721 2899 5.934625 CACTTTGTTCCTATGCTACTCAAGT 59.065 40.000 0.00 0.00 0.00 3.16
2722 2900 6.166279 TCACTTTGTTCCTATGCTACTCAAG 58.834 40.000 0.00 0.00 0.00 3.02
2723 2901 6.109156 TCACTTTGTTCCTATGCTACTCAA 57.891 37.500 0.00 0.00 0.00 3.02
2724 2902 5.738619 TCACTTTGTTCCTATGCTACTCA 57.261 39.130 0.00 0.00 0.00 3.41
2758 2936 1.675641 GATGACCAAAGGTGCCGCT 60.676 57.895 0.00 0.00 35.25 5.52
2828 3006 4.344978 ACTACTGTGTTCATCCTAGCTGA 58.655 43.478 0.00 0.00 0.00 4.26
2913 3092 2.361104 GCCCGAAGCATTCCACCA 60.361 61.111 0.00 0.00 43.81 4.17
2951 3130 2.014857 GGAGGATTTAGCCCGTTTGTC 58.985 52.381 0.00 0.00 0.00 3.18
3123 3308 9.570468 ACTCTAAAAGTCGTCTATATACATCCA 57.430 33.333 0.00 0.00 30.02 3.41
3276 3571 6.983906 ATCTGGGAGTGAAAAACTGAAAAT 57.016 33.333 0.00 0.00 40.07 1.82
3330 3625 3.308530 GTTCAAAACCATGTACAGCTGC 58.691 45.455 15.27 0.00 0.00 5.25
3418 3716 4.138487 ACTAAGACGAATGAATCACCCC 57.862 45.455 0.00 0.00 0.00 4.95
3438 3736 6.526222 CGAATGCTACAACAGACTCTAAAAC 58.474 40.000 0.00 0.00 0.00 2.43
3482 3782 0.696143 TGGTCAAGTGAAGGGTGGGA 60.696 55.000 0.00 0.00 0.00 4.37
3534 3837 0.463620 GATGCTGTGGAGAGGAGGAC 59.536 60.000 0.00 0.00 0.00 3.85
3862 4187 1.884926 GCATCGGAGGGAAAGAGCG 60.885 63.158 0.00 0.00 0.00 5.03
3963 4338 0.731417 ATCAAGCAAGCACGATCAGC 59.269 50.000 0.00 0.00 0.00 4.26
4017 4392 4.591202 CAAACAATGTCATGCTATCCGAC 58.409 43.478 0.00 0.00 0.00 4.79
4026 4401 2.094390 CCCTCCAGCAAACAATGTCATG 60.094 50.000 0.00 0.00 0.00 3.07
4193 4613 2.019984 CACCTTAAGCTGATCCTTGCC 58.980 52.381 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.