Multiple sequence alignment - TraesCS2D01G375200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G375200 | chr2D | 100.000 | 3195 | 0 | 0 | 1 | 3195 | 478875857 | 478872663 | 0.000000e+00 | 5901 |
1 | TraesCS2D01G375200 | chr2D | 96.386 | 166 | 6 | 0 | 1565 | 1730 | 352876554 | 352876719 | 1.130000e-69 | 274 |
2 | TraesCS2D01G375200 | chr2B | 93.522 | 1590 | 76 | 9 | 4 | 1588 | 561284776 | 561283209 | 0.000000e+00 | 2340 |
3 | TraesCS2D01G375200 | chr2B | 95.129 | 698 | 25 | 3 | 1715 | 2406 | 561283114 | 561282420 | 0.000000e+00 | 1092 |
4 | TraesCS2D01G375200 | chr2B | 91.211 | 512 | 16 | 5 | 2490 | 2998 | 561282410 | 561281925 | 0.000000e+00 | 669 |
5 | TraesCS2D01G375200 | chr2B | 96.985 | 199 | 6 | 0 | 2997 | 3195 | 561281842 | 561281644 | 5.110000e-88 | 335 |
6 | TraesCS2D01G375200 | chr2A | 92.502 | 1507 | 75 | 14 | 1723 | 3195 | 621566444 | 621564942 | 0.000000e+00 | 2122 |
7 | TraesCS2D01G375200 | chr2A | 88.825 | 1575 | 118 | 27 | 4 | 1567 | 621567968 | 621566441 | 0.000000e+00 | 1881 |
8 | TraesCS2D01G375200 | chr3D | 97.661 | 171 | 3 | 1 | 1557 | 1726 | 211947742 | 211947572 | 3.120000e-75 | 292 |
9 | TraesCS2D01G375200 | chr3D | 97.516 | 161 | 4 | 0 | 1566 | 1726 | 536788497 | 536788337 | 3.140000e-70 | 276 |
10 | TraesCS2D01G375200 | chr6D | 98.171 | 164 | 3 | 0 | 1565 | 1728 | 72143275 | 72143438 | 1.450000e-73 | 287 |
11 | TraesCS2D01G375200 | chr5D | 98.160 | 163 | 3 | 0 | 1566 | 1728 | 476192534 | 476192372 | 5.220000e-73 | 285 |
12 | TraesCS2D01G375200 | chr5D | 98.718 | 156 | 2 | 0 | 1566 | 1721 | 552059769 | 552059924 | 8.730000e-71 | 278 |
13 | TraesCS2D01G375200 | chr4D | 97.561 | 164 | 4 | 0 | 1564 | 1727 | 38450778 | 38450615 | 6.750000e-72 | 281 |
14 | TraesCS2D01G375200 | chr1B | 97.531 | 162 | 4 | 0 | 1565 | 1726 | 626072057 | 626071896 | 8.730000e-71 | 278 |
15 | TraesCS2D01G375200 | chr5B | 91.935 | 186 | 11 | 4 | 1545 | 1727 | 409866823 | 409867007 | 1.140000e-64 | 257 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G375200 | chr2D | 478872663 | 478875857 | 3194 | True | 5901.0 | 5901 | 100.00000 | 1 | 3195 | 1 | chr2D.!!$R1 | 3194 |
1 | TraesCS2D01G375200 | chr2B | 561281644 | 561284776 | 3132 | True | 1109.0 | 2340 | 94.21175 | 4 | 3195 | 4 | chr2B.!!$R1 | 3191 |
2 | TraesCS2D01G375200 | chr2A | 621564942 | 621567968 | 3026 | True | 2001.5 | 2122 | 90.66350 | 4 | 3195 | 2 | chr2A.!!$R1 | 3191 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
462 | 466 | 0.035317 | TGATCTTTCGTGCTGCCTGT | 59.965 | 50.0 | 0.0 | 0.0 | 0.0 | 4.0 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2233 | 2254 | 0.944386 | TGCTTCCAAGAACTGCGAAC | 59.056 | 50.0 | 0.0 | 0.0 | 0.0 | 3.95 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
80 | 81 | 2.237392 | CCTAAAACTACAGCTGGGCTCT | 59.763 | 50.000 | 19.93 | 0.00 | 36.40 | 4.09 |
81 | 82 | 2.959465 | AAAACTACAGCTGGGCTCTT | 57.041 | 45.000 | 19.93 | 2.68 | 36.40 | 2.85 |
82 | 83 | 2.481289 | AAACTACAGCTGGGCTCTTC | 57.519 | 50.000 | 19.93 | 0.00 | 36.40 | 2.87 |
83 | 84 | 0.615850 | AACTACAGCTGGGCTCTTCC | 59.384 | 55.000 | 19.93 | 0.00 | 36.40 | 3.46 |
84 | 85 | 0.545309 | ACTACAGCTGGGCTCTTCCA | 60.545 | 55.000 | 19.93 | 0.00 | 36.40 | 3.53 |
206 | 209 | 2.167861 | CCGAGCTTTAGCAGGCGAC | 61.168 | 63.158 | 4.33 | 0.00 | 45.16 | 5.19 |
462 | 466 | 0.035317 | TGATCTTTCGTGCTGCCTGT | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
466 | 470 | 0.040958 | CTTTCGTGCTGCCTGTTCAC | 60.041 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
476 | 480 | 3.492011 | GCTGCCTGTTCACTGAATTTTTG | 59.508 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
502 | 506 | 7.572523 | TCTTTTCCTGCGAATTGATGAATAT | 57.427 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
563 | 570 | 4.157472 | TGTTGAGTTGTTGTCATTGCTTGA | 59.843 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
667 | 674 | 3.181483 | CCTGTCTGCAATTTCTTATGGCC | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 5.36 |
699 | 706 | 2.302260 | CACCTCTCTTGCTCTCCGATA | 58.698 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
847 | 854 | 1.443802 | GACACCTGCTGCTTCCTTAC | 58.556 | 55.000 | 0.00 | 0.00 | 0.00 | 2.34 |
881 | 888 | 4.133078 | CAGCAGTTTCCTTTCACTTCTCT | 58.867 | 43.478 | 0.00 | 0.00 | 0.00 | 3.10 |
919 | 926 | 3.053095 | TCCCCTCGTTCCTGAATACTACT | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
923 | 930 | 5.508153 | CCCTCGTTCCTGAATACTACTCATG | 60.508 | 48.000 | 0.00 | 0.00 | 0.00 | 3.07 |
928 | 935 | 6.584184 | CGTTCCTGAATACTACTCATGCTATG | 59.416 | 42.308 | 0.00 | 0.00 | 0.00 | 2.23 |
968 | 976 | 7.693969 | AGGTTTTGATCTTTCCATACAGAAG | 57.306 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
974 | 982 | 3.437213 | TCTTTCCATACAGAAGTCGGGA | 58.563 | 45.455 | 0.00 | 0.00 | 0.00 | 5.14 |
1018 | 1026 | 2.423538 | CCGATGGATTTTGGGACTGAAC | 59.576 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1256 | 1264 | 2.768527 | ACTTCATGGACGAGGTGATGAT | 59.231 | 45.455 | 0.00 | 0.00 | 0.00 | 2.45 |
1258 | 1266 | 3.912496 | TCATGGACGAGGTGATGATTT | 57.088 | 42.857 | 0.00 | 0.00 | 0.00 | 2.17 |
1261 | 1269 | 3.251479 | TGGACGAGGTGATGATTTCTG | 57.749 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
1279 | 1287 | 2.158667 | TCTGTCTTCCCCTTGTTTGGTC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1280 | 1288 | 1.566703 | TGTCTTCCCCTTGTTTGGTCA | 59.433 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
1281 | 1289 | 2.024846 | TGTCTTCCCCTTGTTTGGTCAA | 60.025 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
1295 | 1303 | 1.566018 | GGTCAACAACCTTCGGCTCG | 61.566 | 60.000 | 0.00 | 0.00 | 45.45 | 5.03 |
1317 | 1325 | 3.088194 | AGCATGCCTTATTTCATTGCG | 57.912 | 42.857 | 15.66 | 0.00 | 0.00 | 4.85 |
1339 | 1347 | 5.670097 | CGAATTCACATGACGAATCATACC | 58.330 | 41.667 | 13.15 | 3.85 | 44.13 | 2.73 |
1356 | 1364 | 7.914427 | ATCATACCTACACAAGTTATCAGGA | 57.086 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1365 | 1373 | 5.882557 | ACACAAGTTATCAGGATTCATGGAC | 59.117 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1389 | 1397 | 5.745294 | CGCCCTTGATTATCAAATTTCACAG | 59.255 | 40.000 | 9.05 | 0.00 | 35.73 | 3.66 |
1441 | 1453 | 3.876914 | TGCAATTGCGTCCTAATAAGAGG | 59.123 | 43.478 | 24.58 | 0.00 | 45.83 | 3.69 |
1552 | 1565 | 7.763528 | CCTATGTGGACTATTCTGATCTTATGC | 59.236 | 40.741 | 0.00 | 0.00 | 38.35 | 3.14 |
1577 | 1590 | 5.079643 | TGTTTAGTAAGTACTCCCTCCGTT | 58.920 | 41.667 | 0.00 | 0.00 | 37.73 | 4.44 |
1579 | 1592 | 2.732763 | AGTAAGTACTCCCTCCGTTCC | 58.267 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
1580 | 1593 | 2.311243 | AGTAAGTACTCCCTCCGTTCCT | 59.689 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1586 | 1599 | 5.713807 | AGTACTCCCTCCGTTCCTAAATAT | 58.286 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
1587 | 1600 | 6.856757 | AGTACTCCCTCCGTTCCTAAATATA | 58.143 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
1588 | 1601 | 7.300658 | AGTACTCCCTCCGTTCCTAAATATAA | 58.699 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
1592 | 1605 | 6.379579 | TCCCTCCGTTCCTAAATATAAGTCT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1594 | 1607 | 7.346436 | TCCCTCCGTTCCTAAATATAAGTCTTT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
1595 | 1608 | 7.441458 | CCCTCCGTTCCTAAATATAAGTCTTTG | 59.559 | 40.741 | 0.00 | 0.00 | 0.00 | 2.77 |
1596 | 1609 | 7.985752 | CCTCCGTTCCTAAATATAAGTCTTTGT | 59.014 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
1612 | 1625 | 8.567285 | AAGTCTTTGTAGAGGTTTCATTATGG | 57.433 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
1613 | 1626 | 7.918076 | AGTCTTTGTAGAGGTTTCATTATGGA | 58.082 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
1614 | 1627 | 7.824779 | AGTCTTTGTAGAGGTTTCATTATGGAC | 59.175 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
1615 | 1628 | 7.824779 | GTCTTTGTAGAGGTTTCATTATGGACT | 59.175 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
1616 | 1629 | 9.042450 | TCTTTGTAGAGGTTTCATTATGGACTA | 57.958 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
1617 | 1630 | 9.099454 | CTTTGTAGAGGTTTCATTATGGACTAC | 57.901 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
1618 | 1631 | 7.727578 | TGTAGAGGTTTCATTATGGACTACA | 57.272 | 36.000 | 0.00 | 0.00 | 36.46 | 2.74 |
1619 | 1632 | 8.319057 | TGTAGAGGTTTCATTATGGACTACAT | 57.681 | 34.615 | 0.00 | 0.00 | 43.68 | 2.29 |
1620 | 1633 | 9.429109 | TGTAGAGGTTTCATTATGGACTACATA | 57.571 | 33.333 | 0.00 | 0.00 | 41.03 | 2.29 |
1621 | 1634 | 9.694137 | GTAGAGGTTTCATTATGGACTACATAC | 57.306 | 37.037 | 0.00 | 0.00 | 41.61 | 2.39 |
1622 | 1635 | 7.434492 | AGAGGTTTCATTATGGACTACATACG | 58.566 | 38.462 | 0.00 | 0.00 | 41.61 | 3.06 |
1623 | 1636 | 6.522054 | AGGTTTCATTATGGACTACATACGG | 58.478 | 40.000 | 0.00 | 0.00 | 41.61 | 4.02 |
1624 | 1637 | 6.325545 | AGGTTTCATTATGGACTACATACGGA | 59.674 | 38.462 | 0.00 | 0.00 | 41.61 | 4.69 |
1625 | 1638 | 6.645415 | GGTTTCATTATGGACTACATACGGAG | 59.355 | 42.308 | 0.00 | 0.00 | 41.61 | 4.63 |
1626 | 1639 | 5.386958 | TCATTATGGACTACATACGGAGC | 57.613 | 43.478 | 0.00 | 0.00 | 41.61 | 4.70 |
1627 | 1640 | 4.830600 | TCATTATGGACTACATACGGAGCA | 59.169 | 41.667 | 0.00 | 0.00 | 41.61 | 4.26 |
1628 | 1641 | 5.303333 | TCATTATGGACTACATACGGAGCAA | 59.697 | 40.000 | 0.00 | 0.00 | 41.61 | 3.91 |
1629 | 1642 | 5.601583 | TTATGGACTACATACGGAGCAAA | 57.398 | 39.130 | 0.00 | 0.00 | 41.61 | 3.68 |
1630 | 1643 | 3.965379 | TGGACTACATACGGAGCAAAA | 57.035 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
1631 | 1644 | 4.481368 | TGGACTACATACGGAGCAAAAT | 57.519 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
1632 | 1645 | 4.188462 | TGGACTACATACGGAGCAAAATG | 58.812 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
1633 | 1646 | 4.081365 | TGGACTACATACGGAGCAAAATGA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1634 | 1647 | 4.508124 | GGACTACATACGGAGCAAAATGAG | 59.492 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
1637 | 1650 | 3.937814 | ACATACGGAGCAAAATGAGTGA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
1643 | 1656 | 4.631813 | ACGGAGCAAAATGAGTGAATCTAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
1644 | 1657 | 4.872691 | CGGAGCAAAATGAGTGAATCTACT | 59.127 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1646 | 1659 | 6.456181 | CGGAGCAAAATGAGTGAATCTACTTC | 60.456 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
1649 | 1662 | 9.155975 | GAGCAAAATGAGTGAATCTACTTCTAA | 57.844 | 33.333 | 0.00 | 0.00 | 34.75 | 2.10 |
1650 | 1663 | 9.507329 | AGCAAAATGAGTGAATCTACTTCTAAA | 57.493 | 29.630 | 0.00 | 0.00 | 34.75 | 1.85 |
1655 | 1668 | 9.453572 | AATGAGTGAATCTACTTCTAAAATGCA | 57.546 | 29.630 | 0.00 | 0.00 | 34.75 | 3.96 |
1657 | 1670 | 9.102757 | TGAGTGAATCTACTTCTAAAATGCATC | 57.897 | 33.333 | 0.00 | 0.00 | 34.75 | 3.91 |
1676 | 1689 | 6.805713 | TGCATCTATATACATCCGTATGTGG | 58.194 | 40.000 | 3.56 | 0.00 | 45.99 | 4.17 |
1677 | 1690 | 6.379988 | TGCATCTATATACATCCGTATGTGGT | 59.620 | 38.462 | 3.56 | 0.00 | 45.99 | 4.16 |
1678 | 1691 | 7.093509 | TGCATCTATATACATCCGTATGTGGTT | 60.094 | 37.037 | 3.56 | 0.00 | 45.99 | 3.67 |
1679 | 1692 | 7.435488 | GCATCTATATACATCCGTATGTGGTTC | 59.565 | 40.741 | 3.56 | 0.00 | 45.99 | 3.62 |
1680 | 1693 | 8.466798 | CATCTATATACATCCGTATGTGGTTCA | 58.533 | 37.037 | 3.56 | 0.00 | 45.99 | 3.18 |
1682 | 1695 | 9.689501 | TCTATATACATCCGTATGTGGTTCATA | 57.310 | 33.333 | 3.56 | 0.00 | 45.99 | 2.15 |
1683 | 1696 | 9.952188 | CTATATACATCCGTATGTGGTTCATAG | 57.048 | 37.037 | 3.56 | 0.80 | 45.99 | 2.23 |
1684 | 1697 | 6.665992 | ATACATCCGTATGTGGTTCATAGT | 57.334 | 37.500 | 3.56 | 0.00 | 45.99 | 2.12 |
1685 | 1698 | 4.693283 | ACATCCGTATGTGGTTCATAGTG | 58.307 | 43.478 | 0.00 | 0.00 | 44.79 | 2.74 |
1686 | 1699 | 4.404394 | ACATCCGTATGTGGTTCATAGTGA | 59.596 | 41.667 | 0.00 | 0.00 | 44.79 | 3.41 |
1687 | 1700 | 5.105106 | ACATCCGTATGTGGTTCATAGTGAA | 60.105 | 40.000 | 0.00 | 0.00 | 44.79 | 3.18 |
1689 | 1702 | 5.984725 | TCCGTATGTGGTTCATAGTGAAAT | 58.015 | 37.500 | 0.00 | 0.00 | 38.22 | 2.17 |
1690 | 1703 | 6.046593 | TCCGTATGTGGTTCATAGTGAAATC | 58.953 | 40.000 | 0.00 | 0.00 | 38.22 | 2.17 |
1691 | 1704 | 6.049149 | CCGTATGTGGTTCATAGTGAAATCT | 58.951 | 40.000 | 0.00 | 0.00 | 38.22 | 2.40 |
1692 | 1705 | 6.201044 | CCGTATGTGGTTCATAGTGAAATCTC | 59.799 | 42.308 | 0.00 | 0.00 | 38.22 | 2.75 |
1695 | 1708 | 9.250624 | GTATGTGGTTCATAGTGAAATCTCTAC | 57.749 | 37.037 | 0.00 | 0.00 | 38.22 | 2.59 |
1696 | 1709 | 7.239763 | TGTGGTTCATAGTGAAATCTCTACA | 57.760 | 36.000 | 0.00 | 0.00 | 38.22 | 2.74 |
1697 | 1710 | 7.676004 | TGTGGTTCATAGTGAAATCTCTACAA | 58.324 | 34.615 | 0.00 | 0.00 | 38.22 | 2.41 |
1698 | 1711 | 8.154203 | TGTGGTTCATAGTGAAATCTCTACAAA | 58.846 | 33.333 | 0.00 | 0.00 | 38.22 | 2.83 |
1699 | 1712 | 8.660373 | GTGGTTCATAGTGAAATCTCTACAAAG | 58.340 | 37.037 | 0.00 | 0.00 | 38.22 | 2.77 |
1700 | 1713 | 8.593679 | TGGTTCATAGTGAAATCTCTACAAAGA | 58.406 | 33.333 | 0.00 | 0.00 | 38.22 | 2.52 |
1701 | 1714 | 8.874816 | GGTTCATAGTGAAATCTCTACAAAGAC | 58.125 | 37.037 | 0.00 | 0.00 | 38.22 | 3.01 |
1702 | 1715 | 9.646427 | GTTCATAGTGAAATCTCTACAAAGACT | 57.354 | 33.333 | 0.00 | 0.00 | 38.22 | 3.24 |
1798 | 1811 | 0.321298 | TCCCCACTTAAGCAAGTCGC | 60.321 | 55.000 | 1.29 | 0.00 | 43.30 | 5.19 |
1813 | 1826 | 1.954382 | AGTCGCTTTCACCTTTTTCCC | 59.046 | 47.619 | 0.00 | 0.00 | 0.00 | 3.97 |
1866 | 1879 | 0.674581 | TCATGACTGGGCTTTCGCTG | 60.675 | 55.000 | 0.00 | 0.00 | 36.09 | 5.18 |
1890 | 1903 | 4.889832 | AGAGTTCAAAGTGCTTGTTCAG | 57.110 | 40.909 | 0.00 | 0.00 | 36.34 | 3.02 |
1920 | 1933 | 2.540265 | AGGAACTCAGTCAAGTGCAG | 57.460 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2040 | 2053 | 4.580167 | TCTGGGCAATTTAGCATGATGTAC | 59.420 | 41.667 | 0.00 | 0.00 | 35.83 | 2.90 |
2233 | 2254 | 3.454082 | AGAAAGCTGTAAGATCTGGGAGG | 59.546 | 47.826 | 0.00 | 0.00 | 34.07 | 4.30 |
2308 | 2347 | 1.774254 | CCAACATGAGGGGCCTATGTA | 59.226 | 52.381 | 17.45 | 0.00 | 34.18 | 2.29 |
2337 | 2376 | 0.947180 | TCGTTAAACGGCTGTGGAGC | 60.947 | 55.000 | 0.00 | 0.00 | 42.81 | 4.70 |
2346 | 2385 | 2.042831 | GCTGTGGAGCCGAAGCAAT | 61.043 | 57.895 | 8.01 | 0.00 | 43.56 | 3.56 |
2463 | 2503 | 2.615747 | GGTAAAAGACCTCCTGGAGTGC | 60.616 | 54.545 | 21.70 | 13.00 | 45.89 | 4.40 |
2539 | 2582 | 2.412525 | CTTGCGTGCAAGTTGGCA | 59.587 | 55.556 | 23.06 | 3.02 | 45.91 | 4.92 |
2641 | 2684 | 3.072915 | TGTCTCCACCATGTGATTGAGTT | 59.927 | 43.478 | 0.00 | 0.00 | 35.23 | 3.01 |
2642 | 2685 | 4.285775 | TGTCTCCACCATGTGATTGAGTTA | 59.714 | 41.667 | 0.00 | 0.00 | 35.23 | 2.24 |
2643 | 2686 | 5.045651 | TGTCTCCACCATGTGATTGAGTTAT | 60.046 | 40.000 | 0.00 | 0.00 | 35.23 | 1.89 |
2644 | 2687 | 5.882557 | GTCTCCACCATGTGATTGAGTTATT | 59.117 | 40.000 | 0.00 | 0.00 | 35.23 | 1.40 |
2645 | 2688 | 7.047891 | GTCTCCACCATGTGATTGAGTTATTA | 58.952 | 38.462 | 0.00 | 0.00 | 35.23 | 0.98 |
2646 | 2689 | 7.716998 | GTCTCCACCATGTGATTGAGTTATTAT | 59.283 | 37.037 | 0.00 | 0.00 | 35.23 | 1.28 |
2647 | 2690 | 8.274322 | TCTCCACCATGTGATTGAGTTATTATT | 58.726 | 33.333 | 0.00 | 0.00 | 35.23 | 1.40 |
2648 | 2691 | 9.559732 | CTCCACCATGTGATTGAGTTATTATTA | 57.440 | 33.333 | 0.00 | 0.00 | 35.23 | 0.98 |
2897 | 2965 | 8.497554 | GTTTGATCTCTCATCTATTCTGCATTC | 58.502 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
2924 | 2992 | 8.801299 | CAGTAGATCTATGTCAACCTATGTCAT | 58.199 | 37.037 | 5.57 | 0.00 | 40.27 | 3.06 |
3052 | 3204 | 1.207488 | TGGGGTAATGCTGTGAGGCT | 61.207 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
3094 | 3246 | 2.241941 | TGGCACAAGATACCACATGGAT | 59.758 | 45.455 | 4.53 | 0.00 | 34.98 | 3.41 |
3157 | 3309 | 9.477484 | GAGTTTCAACTTAAGACACTCTTATGA | 57.523 | 33.333 | 10.09 | 2.34 | 38.60 | 2.15 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 9.056005 | AGATGTAATTTCTATTGCTATTGCGAA | 57.944 | 29.630 | 0.00 | 0.00 | 43.34 | 4.70 |
1 | 2 | 8.498358 | CAGATGTAATTTCTATTGCTATTGCGA | 58.502 | 33.333 | 0.00 | 0.00 | 43.34 | 5.10 |
2 | 3 | 8.498358 | TCAGATGTAATTTCTATTGCTATTGCG | 58.502 | 33.333 | 0.00 | 0.00 | 43.34 | 4.85 |
80 | 81 | 1.681666 | CTGAAGAGCCCAGCTGGAA | 59.318 | 57.895 | 34.91 | 9.01 | 39.88 | 3.53 |
81 | 82 | 2.296365 | CCTGAAGAGCCCAGCTGGA | 61.296 | 63.158 | 34.91 | 11.29 | 39.88 | 3.86 |
82 | 83 | 2.271497 | CCTGAAGAGCCCAGCTGG | 59.729 | 66.667 | 26.87 | 26.87 | 39.88 | 4.85 |
83 | 84 | 1.633915 | ATCCCTGAAGAGCCCAGCTG | 61.634 | 60.000 | 6.78 | 6.78 | 39.88 | 4.24 |
84 | 85 | 0.030705 | TATCCCTGAAGAGCCCAGCT | 60.031 | 55.000 | 0.00 | 0.00 | 43.88 | 4.24 |
416 | 420 | 1.144936 | GGAGTGGGCCAAGAGATCG | 59.855 | 63.158 | 8.40 | 0.00 | 0.00 | 3.69 |
462 | 466 | 7.064490 | GCAGGAAAAGAACAAAAATTCAGTGAA | 59.936 | 33.333 | 8.27 | 8.27 | 0.00 | 3.18 |
466 | 470 | 5.748152 | TCGCAGGAAAAGAACAAAAATTCAG | 59.252 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
476 | 480 | 5.046910 | TCATCAATTCGCAGGAAAAGAAC | 57.953 | 39.130 | 0.00 | 0.00 | 35.40 | 3.01 |
502 | 506 | 7.675062 | TGCCTTTTCCATTTTAGCAATAAGAA | 58.325 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
541 | 545 | 4.671377 | TCAAGCAATGACAACAACTCAAC | 58.329 | 39.130 | 0.00 | 0.00 | 31.50 | 3.18 |
667 | 674 | 0.108233 | GAGAGGTGGCAGCAGAGAAG | 60.108 | 60.000 | 20.04 | 0.00 | 0.00 | 2.85 |
699 | 706 | 1.152694 | TGCCTTGCAGCCTTGAAGT | 60.153 | 52.632 | 0.00 | 0.00 | 33.32 | 3.01 |
804 | 811 | 5.288232 | CGACAAGTGCATGAAAAAGACAAAA | 59.712 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
847 | 854 | 3.190118 | GGAAACTGCTGATTCTTGGACAG | 59.810 | 47.826 | 12.22 | 0.00 | 35.14 | 3.51 |
881 | 888 | 1.573108 | GGGAGGACACATGAAGGAGA | 58.427 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
941 | 948 | 9.753674 | TTCTGTATGGAAAGATCAAAACCTATT | 57.246 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
958 | 965 | 1.137086 | CTGGTCCCGACTTCTGTATGG | 59.863 | 57.143 | 0.00 | 0.00 | 0.00 | 2.74 |
968 | 976 | 2.232298 | CTGCTTCCTCTGGTCCCGAC | 62.232 | 65.000 | 0.00 | 0.00 | 0.00 | 4.79 |
974 | 982 | 4.373156 | AATTTGTACTGCTTCCTCTGGT | 57.627 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
1018 | 1026 | 0.523072 | CGGCAAACACATCCCTTCAG | 59.477 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1147 | 1155 | 3.388024 | ACACGGCTGAGGTCAATATACAT | 59.612 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
1256 | 1264 | 3.295973 | CCAAACAAGGGGAAGACAGAAA | 58.704 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
1258 | 1266 | 1.850345 | ACCAAACAAGGGGAAGACAGA | 59.150 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
1261 | 1269 | 2.358322 | TGACCAAACAAGGGGAAGAC | 57.642 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1295 | 1303 | 3.488310 | CGCAATGAAATAAGGCATGCTTC | 59.512 | 43.478 | 18.92 | 13.28 | 0.00 | 3.86 |
1317 | 1325 | 6.851222 | AGGTATGATTCGTCATGTGAATTC | 57.149 | 37.500 | 14.25 | 0.00 | 36.24 | 2.17 |
1339 | 1347 | 7.225538 | GTCCATGAATCCTGATAACTTGTGTAG | 59.774 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
1356 | 1364 | 2.442236 | AATCAAGGGCGTCCATGAAT | 57.558 | 45.000 | 19.00 | 7.11 | 43.04 | 2.57 |
1365 | 1373 | 5.649557 | TGTGAAATTTGATAATCAAGGGCG | 58.350 | 37.500 | 0.00 | 0.00 | 37.70 | 6.13 |
1441 | 1453 | 6.591448 | AGCAGGCAAAACTTTAAATAATCTGC | 59.409 | 34.615 | 0.00 | 0.00 | 41.81 | 4.26 |
1552 | 1565 | 5.126707 | ACGGAGGGAGTACTTACTAAACATG | 59.873 | 44.000 | 0.00 | 0.00 | 36.50 | 3.21 |
1560 | 1573 | 2.732763 | AGGAACGGAGGGAGTACTTAC | 58.267 | 52.381 | 0.00 | 0.00 | 0.00 | 2.34 |
1586 | 1599 | 9.667107 | CCATAATGAAACCTCTACAAAGACTTA | 57.333 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1587 | 1600 | 8.383175 | TCCATAATGAAACCTCTACAAAGACTT | 58.617 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1588 | 1601 | 7.824779 | GTCCATAATGAAACCTCTACAAAGACT | 59.175 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
1592 | 1605 | 8.598916 | TGTAGTCCATAATGAAACCTCTACAAA | 58.401 | 33.333 | 0.00 | 0.00 | 34.46 | 2.83 |
1594 | 1607 | 7.727578 | TGTAGTCCATAATGAAACCTCTACA | 57.272 | 36.000 | 0.00 | 0.00 | 34.82 | 2.74 |
1595 | 1608 | 9.694137 | GTATGTAGTCCATAATGAAACCTCTAC | 57.306 | 37.037 | 0.00 | 0.00 | 37.77 | 2.59 |
1596 | 1609 | 8.573885 | CGTATGTAGTCCATAATGAAACCTCTA | 58.426 | 37.037 | 0.00 | 0.00 | 37.77 | 2.43 |
1598 | 1611 | 6.645415 | CCGTATGTAGTCCATAATGAAACCTC | 59.355 | 42.308 | 0.00 | 0.00 | 37.77 | 3.85 |
1599 | 1612 | 6.325545 | TCCGTATGTAGTCCATAATGAAACCT | 59.674 | 38.462 | 0.00 | 0.00 | 37.77 | 3.50 |
1601 | 1614 | 6.145696 | GCTCCGTATGTAGTCCATAATGAAAC | 59.854 | 42.308 | 0.00 | 0.00 | 37.77 | 2.78 |
1602 | 1615 | 6.183360 | TGCTCCGTATGTAGTCCATAATGAAA | 60.183 | 38.462 | 0.00 | 0.00 | 37.77 | 2.69 |
1604 | 1617 | 4.830600 | TGCTCCGTATGTAGTCCATAATGA | 59.169 | 41.667 | 0.00 | 0.00 | 37.77 | 2.57 |
1605 | 1618 | 5.134202 | TGCTCCGTATGTAGTCCATAATG | 57.866 | 43.478 | 0.00 | 0.00 | 37.77 | 1.90 |
1607 | 1620 | 5.601583 | TTTGCTCCGTATGTAGTCCATAA | 57.398 | 39.130 | 0.00 | 0.00 | 37.77 | 1.90 |
1608 | 1621 | 5.601583 | TTTTGCTCCGTATGTAGTCCATA | 57.398 | 39.130 | 0.00 | 0.00 | 34.86 | 2.74 |
1609 | 1622 | 4.481368 | TTTTGCTCCGTATGTAGTCCAT | 57.519 | 40.909 | 0.00 | 0.00 | 37.58 | 3.41 |
1610 | 1623 | 3.965379 | TTTTGCTCCGTATGTAGTCCA | 57.035 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
1612 | 1625 | 5.005779 | CACTCATTTTGCTCCGTATGTAGTC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1613 | 1626 | 4.870426 | CACTCATTTTGCTCCGTATGTAGT | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
1614 | 1627 | 5.109210 | TCACTCATTTTGCTCCGTATGTAG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1615 | 1628 | 5.079689 | TCACTCATTTTGCTCCGTATGTA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
1616 | 1629 | 3.937814 | TCACTCATTTTGCTCCGTATGT | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
1617 | 1630 | 4.944962 | TTCACTCATTTTGCTCCGTATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
1618 | 1631 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
1619 | 1632 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
1620 | 1633 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
1621 | 1634 | 4.872691 | AGTAGATTCACTCATTTTGCTCCG | 59.127 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
1622 | 1635 | 6.597280 | AGAAGTAGATTCACTCATTTTGCTCC | 59.403 | 38.462 | 0.00 | 0.00 | 40.67 | 4.70 |
1623 | 1636 | 7.608308 | AGAAGTAGATTCACTCATTTTGCTC | 57.392 | 36.000 | 0.00 | 0.00 | 40.67 | 4.26 |
1624 | 1637 | 9.507329 | TTTAGAAGTAGATTCACTCATTTTGCT | 57.493 | 29.630 | 0.00 | 0.00 | 40.67 | 3.91 |
1629 | 1642 | 9.453572 | TGCATTTTAGAAGTAGATTCACTCATT | 57.546 | 29.630 | 0.00 | 0.00 | 40.67 | 2.57 |
1630 | 1643 | 9.624373 | ATGCATTTTAGAAGTAGATTCACTCAT | 57.376 | 29.630 | 0.00 | 0.00 | 40.67 | 2.90 |
1631 | 1644 | 9.102757 | GATGCATTTTAGAAGTAGATTCACTCA | 57.897 | 33.333 | 0.00 | 0.00 | 40.67 | 3.41 |
1632 | 1645 | 9.323985 | AGATGCATTTTAGAAGTAGATTCACTC | 57.676 | 33.333 | 0.00 | 0.00 | 40.67 | 3.51 |
1649 | 1662 | 9.317936 | CACATACGGATGTATATAGATGCATTT | 57.682 | 33.333 | 14.23 | 0.00 | 44.82 | 2.32 |
1650 | 1663 | 7.928167 | CCACATACGGATGTATATAGATGCATT | 59.072 | 37.037 | 14.23 | 1.23 | 44.82 | 3.56 |
1651 | 1664 | 7.069950 | ACCACATACGGATGTATATAGATGCAT | 59.930 | 37.037 | 14.23 | 0.00 | 44.82 | 3.96 |
1653 | 1666 | 6.806751 | ACCACATACGGATGTATATAGATGC | 58.193 | 40.000 | 14.23 | 0.00 | 44.82 | 3.91 |
1654 | 1667 | 8.466798 | TGAACCACATACGGATGTATATAGATG | 58.533 | 37.037 | 14.23 | 0.00 | 44.82 | 2.90 |
1655 | 1668 | 8.589701 | TGAACCACATACGGATGTATATAGAT | 57.410 | 34.615 | 14.23 | 0.00 | 44.82 | 1.98 |
1657 | 1670 | 9.952188 | CTATGAACCACATACGGATGTATATAG | 57.048 | 37.037 | 14.23 | 12.28 | 44.82 | 1.31 |
1660 | 1673 | 7.449086 | TCACTATGAACCACATACGGATGTATA | 59.551 | 37.037 | 14.23 | 6.48 | 44.82 | 1.47 |
1669 | 1682 | 9.250624 | GTAGAGATTTCACTATGAACCACATAC | 57.749 | 37.037 | 0.00 | 0.00 | 35.89 | 2.39 |
1671 | 1684 | 7.851228 | TGTAGAGATTTCACTATGAACCACAT | 58.149 | 34.615 | 0.00 | 0.00 | 35.89 | 3.21 |
1673 | 1686 | 8.547967 | TTTGTAGAGATTTCACTATGAACCAC | 57.452 | 34.615 | 0.00 | 0.00 | 35.89 | 4.16 |
1676 | 1689 | 9.646427 | AGTCTTTGTAGAGATTTCACTATGAAC | 57.354 | 33.333 | 0.00 | 0.00 | 35.89 | 3.18 |
1695 | 1708 | 8.827677 | CCCTCCGTTTCTAAATATAAGTCTTTG | 58.172 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
1696 | 1709 | 8.765517 | TCCCTCCGTTTCTAAATATAAGTCTTT | 58.234 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1697 | 1710 | 8.315220 | TCCCTCCGTTTCTAAATATAAGTCTT | 57.685 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1698 | 1711 | 7.564292 | ACTCCCTCCGTTTCTAAATATAAGTCT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
1699 | 1712 | 7.724287 | ACTCCCTCCGTTTCTAAATATAAGTC | 58.276 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1700 | 1713 | 7.672122 | ACTCCCTCCGTTTCTAAATATAAGT | 57.328 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1701 | 1714 | 8.858094 | ACTACTCCCTCCGTTTCTAAATATAAG | 58.142 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
1702 | 1715 | 8.773033 | ACTACTCCCTCCGTTTCTAAATATAA | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
1703 | 1716 | 9.289782 | GTACTACTCCCTCCGTTTCTAAATATA | 57.710 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
1704 | 1717 | 7.781693 | TGTACTACTCCCTCCGTTTCTAAATAT | 59.218 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
1705 | 1718 | 7.118723 | TGTACTACTCCCTCCGTTTCTAAATA | 58.881 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
1706 | 1719 | 5.954150 | TGTACTACTCCCTCCGTTTCTAAAT | 59.046 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1707 | 1720 | 5.324409 | TGTACTACTCCCTCCGTTTCTAAA | 58.676 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
1708 | 1721 | 4.922206 | TGTACTACTCCCTCCGTTTCTAA | 58.078 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
1709 | 1722 | 4.225942 | TCTGTACTACTCCCTCCGTTTCTA | 59.774 | 45.833 | 0.00 | 0.00 | 0.00 | 2.10 |
1710 | 1723 | 3.009916 | TCTGTACTACTCCCTCCGTTTCT | 59.990 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
1711 | 1724 | 3.350833 | TCTGTACTACTCCCTCCGTTTC | 58.649 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1712 | 1725 | 3.446442 | TCTGTACTACTCCCTCCGTTT | 57.554 | 47.619 | 0.00 | 0.00 | 0.00 | 3.60 |
1713 | 1726 | 3.202595 | AGATCTGTACTACTCCCTCCGTT | 59.797 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
1798 | 1811 | 3.383505 | AGGAAACGGGAAAAAGGTGAAAG | 59.616 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
1813 | 1826 | 1.536462 | CGCCAACGCAAAAGGAAACG | 61.536 | 55.000 | 0.00 | 0.00 | 34.03 | 3.60 |
1866 | 1879 | 6.545504 | TGAACAAGCACTTTGAACTCTATC | 57.454 | 37.500 | 0.00 | 0.00 | 39.21 | 2.08 |
1890 | 1903 | 4.116238 | GACTGAGTTCCTTATACTGCTGC | 58.884 | 47.826 | 0.00 | 0.00 | 0.00 | 5.25 |
1920 | 1933 | 3.189495 | GCAGAAAGCCAAAGAGGACTAAC | 59.811 | 47.826 | 0.00 | 0.00 | 41.22 | 2.34 |
2140 | 2155 | 2.681706 | CGAAGAACATGAGCTGTGTCT | 58.318 | 47.619 | 0.00 | 0.00 | 38.39 | 3.41 |
2181 | 2196 | 1.522569 | GCAGACTAATGGGACGGCT | 59.477 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
2233 | 2254 | 0.944386 | TGCTTCCAAGAACTGCGAAC | 59.056 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2308 | 2347 | 5.813672 | ACAGCCGTTTAACGATATGTACATT | 59.186 | 36.000 | 19.61 | 1.88 | 46.05 | 2.71 |
2337 | 2376 | 7.225538 | AGACACTAATCATTTAGATTGCTTCGG | 59.774 | 37.037 | 0.85 | 0.00 | 46.24 | 4.30 |
2346 | 2385 | 6.374333 | GGCAAACCAGACACTAATCATTTAGA | 59.626 | 38.462 | 0.03 | 0.00 | 36.08 | 2.10 |
2418 | 2458 | 3.593247 | GCTAGACGCAAGCAACATG | 57.407 | 52.632 | 0.00 | 0.00 | 45.62 | 3.21 |
2534 | 2577 | 2.208132 | ATACCCAACGAACATGCCAA | 57.792 | 45.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2539 | 2582 | 3.275999 | GCAAGGTATACCCAACGAACAT | 58.724 | 45.455 | 18.65 | 0.00 | 36.42 | 2.71 |
2736 | 2804 | 1.426621 | CGCATGTCTGAAGCGCAAT | 59.573 | 52.632 | 11.47 | 0.00 | 45.14 | 3.56 |
2897 | 2965 | 7.231519 | TGACATAGGTTGACATAGATCTACTGG | 59.768 | 40.741 | 4.10 | 0.51 | 0.00 | 4.00 |
2924 | 2992 | 3.260632 | TGCAATCGCCTGCTATTATCCTA | 59.739 | 43.478 | 9.52 | 0.00 | 43.07 | 2.94 |
3017 | 3169 | 2.105993 | ACCCCACTTCAACAAGGTAGAC | 59.894 | 50.000 | 0.00 | 0.00 | 33.37 | 2.59 |
3052 | 3204 | 4.126437 | CACGATATGGTGGAATAAGCACA | 58.874 | 43.478 | 9.83 | 0.00 | 34.27 | 4.57 |
3084 | 3236 | 7.792736 | TCCCTTTAGTATACTTATCCATGTGGT | 59.207 | 37.037 | 11.40 | 0.00 | 36.34 | 4.16 |
3094 | 3246 | 9.496710 | TGAGGATTGTTCCCTTTAGTATACTTA | 57.503 | 33.333 | 11.40 | 0.00 | 43.76 | 2.24 |
3157 | 3309 | 1.981495 | CCCTTTCAACTGGTCTCCTCT | 59.019 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.