Multiple sequence alignment - TraesCS2D01G373700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G373700 chr2D 100.000 6072 0 0 1 6072 477248540 477242469 0.000000e+00 11213.0
1 TraesCS2D01G373700 chr2D 89.773 88 9 0 396 483 576403650 576403563 4.970000e-21 113.0
2 TraesCS2D01G373700 chr2D 88.060 67 8 0 417 483 576421103 576421037 5.050000e-11 80.5
3 TraesCS2D01G373700 chr2D 95.349 43 2 0 441 483 576438931 576438889 1.090000e-07 69.4
4 TraesCS2D01G373700 chr2B 89.026 3171 201 66 2970 6072 559185137 559182046 0.000000e+00 3792.0
5 TraesCS2D01G373700 chr2B 85.013 1121 86 34 783 1880 559187750 559186689 0.000000e+00 1064.0
6 TraesCS2D01G373700 chr2B 81.191 957 127 23 1892 2807 559186174 559185230 0.000000e+00 721.0
7 TraesCS2D01G373700 chr2B 88.380 284 13 11 6 281 559188019 559187748 2.110000e-84 324.0
8 TraesCS2D01G373700 chr2A 88.363 2028 150 46 2576 4578 619621566 619619600 0.000000e+00 2359.0
9 TraesCS2D01G373700 chr2A 87.988 1024 81 24 783 1792 619623151 619622156 0.000000e+00 1171.0
10 TraesCS2D01G373700 chr2A 85.980 699 50 14 4575 5266 619619551 619618894 0.000000e+00 704.0
11 TraesCS2D01G373700 chr2A 91.176 238 13 5 3 233 619623426 619623190 3.530000e-82 316.0
12 TraesCS2D01G373700 chr2A 88.636 88 10 0 396 483 650961429 650961342 2.310000e-19 108.0
13 TraesCS2D01G373700 chr2A 77.005 187 36 6 5523 5705 772695926 772696109 3.870000e-17 100.0
14 TraesCS2D01G373700 chr4D 84.171 398 31 12 416 783 293955213 293955608 2.080000e-94 357.0
15 TraesCS2D01G373700 chr4D 100.000 29 0 0 443 471 293954585 293954613 3.000000e-03 54.7
16 TraesCS2D01G373700 chr3D 82.870 432 34 24 388 785 8991395 8990970 9.680000e-93 351.0
17 TraesCS2D01G373700 chr5D 84.733 262 30 10 534 788 420025639 420025381 2.810000e-63 254.0
18 TraesCS2D01G373700 chr5D 77.283 427 78 16 3764 4181 528880473 528880057 3.660000e-57 233.0
19 TraesCS2D01G373700 chr5D 82.716 243 35 5 543 783 6523740 6523503 6.170000e-50 209.0
20 TraesCS2D01G373700 chr5D 75.598 209 41 8 5501 5705 246336106 246335904 1.800000e-15 95.3
21 TraesCS2D01G373700 chr7D 85.597 243 27 8 543 782 138313316 138313553 1.310000e-61 248.0
22 TraesCS2D01G373700 chr5B 86.301 219 28 2 3764 3982 666126174 666125958 2.830000e-58 237.0
23 TraesCS2D01G373700 chr5B 82.329 249 35 9 543 785 591661741 591661496 2.220000e-49 207.0
24 TraesCS2D01G373700 chr5B 82.710 214 37 0 3764 3977 665994669 665994456 2.230000e-44 191.0
25 TraesCS2D01G373700 chr5A 85.388 219 30 2 3764 3982 657182506 657182290 6.120000e-55 226.0
26 TraesCS2D01G373700 chr5A 89.147 129 13 1 536 664 413184735 413184608 6.300000e-35 159.0
27 TraesCS2D01G373700 chr5A 100.000 29 0 0 443 471 605801077 605801105 3.000000e-03 54.7
28 TraesCS2D01G373700 chr7A 78.755 273 48 9 518 783 379027069 379027338 2.250000e-39 174.0
29 TraesCS2D01G373700 chrUn 84.706 170 23 3 618 785 331573881 331574049 3.760000e-37 167.0
30 TraesCS2D01G373700 chrUn 84.706 170 23 3 618 785 331602252 331602420 3.760000e-37 167.0
31 TraesCS2D01G373700 chr3A 82.759 174 25 4 613 783 690464506 690464677 3.790000e-32 150.0
32 TraesCS2D01G373700 chr6D 81.197 117 20 2 279 394 469342707 469342822 6.480000e-15 93.5
33 TraesCS2D01G373700 chr6B 82.979 94 10 1 396 483 368305308 368305401 5.050000e-11 80.5
34 TraesCS2D01G373700 chr6B 100.000 29 0 0 443 471 188499827 188499855 3.000000e-03 54.7
35 TraesCS2D01G373700 chr1D 81.319 91 7 8 396 483 9836902 9836985 1.410000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G373700 chr2D 477242469 477248540 6071 True 11213.00 11213 100.00000 1 6072 1 chr2D.!!$R1 6071
1 TraesCS2D01G373700 chr2B 559182046 559188019 5973 True 1475.25 3792 85.90250 6 6072 4 chr2B.!!$R1 6066
2 TraesCS2D01G373700 chr2A 619618894 619623426 4532 True 1137.50 2359 88.37675 3 5266 4 chr2A.!!$R2 5263
3 TraesCS2D01G373700 chr4D 293954585 293955608 1023 False 205.85 357 92.08550 416 783 2 chr4D.!!$F1 367

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 293 0.037326 TGGCGTGCCTGACTTAAGAG 60.037 55.0 10.09 0.0 36.94 2.85 F
304 314 0.107945 ATCTCCAGCCGTTGAGCTTC 60.108 55.0 0.00 0.0 42.61 3.86 F
348 358 0.249911 GGAAGGCTGCCGACGATAAT 60.250 55.0 13.96 0.0 0.00 1.28 F
389 399 0.390735 ATTACACTCGTTGTCCCCGC 60.391 55.0 0.00 0.0 39.91 6.13 F
1096 1354 0.532573 TCGGCTCGATCTTGCTTCTT 59.467 50.0 6.73 0.0 0.00 2.52 F
2526 3343 0.167908 CTTGCCGAATTGCAACGCTA 59.832 50.0 0.00 0.0 45.77 4.26 F
3463 4300 0.034960 TCCTGGTCCGTCTCTCTCAG 60.035 60.0 0.00 0.0 0.00 3.35 F
3701 4540 0.108186 GACCCGTGCTGTCATCATCA 60.108 55.0 0.00 0.0 32.91 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2895 0.104144 TTCTCTGGTGGGAAGGGGAA 60.104 55.000 0.00 0.00 0.00 3.97 R
2098 2902 0.178973 TCGTGACTTCTCTGGTGGGA 60.179 55.000 0.00 0.00 0.00 4.37 R
2268 3077 0.320771 CTTGAAGTAGTGTGCGGGCT 60.321 55.000 0.00 0.00 0.00 5.19 R
2280 3089 1.905894 GCCTCTCTCTTCCCTTGAAGT 59.094 52.381 2.56 0.00 46.66 3.01 R
2780 3599 0.396811 ACCAACCTTCCACTTCCTCG 59.603 55.000 0.00 0.00 0.00 4.63 R
4030 4869 0.033796 ACCATCCATCAGCTGGGTTG 60.034 55.000 15.13 12.72 45.98 3.77 R
4990 5935 0.322997 CCCGGCCAAAGTACCAATCA 60.323 55.000 2.24 0.00 0.00 2.57 R
5645 6607 0.872881 GAATTGTCATGCGGCATGGC 60.873 55.000 34.14 34.14 45.49 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.104143 CACTGTAATCGGCCGGAC 57.896 61.111 27.83 20.77 0.00 4.79
190 191 4.987419 CGCTGTCTCTACGCTCTC 57.013 61.111 0.00 0.00 0.00 3.20
194 195 1.330521 GCTGTCTCTACGCTCTCTCTG 59.669 57.143 0.00 0.00 0.00 3.35
201 202 3.820467 CTCTACGCTCTCTCTGATGGATT 59.180 47.826 0.00 0.00 0.00 3.01
202 203 3.818210 TCTACGCTCTCTCTGATGGATTC 59.182 47.826 0.00 0.00 0.00 2.52
203 204 2.665165 ACGCTCTCTCTGATGGATTCT 58.335 47.619 0.00 0.00 0.00 2.40
204 205 2.361757 ACGCTCTCTCTGATGGATTCTG 59.638 50.000 0.00 0.00 0.00 3.02
205 206 2.758009 GCTCTCTCTGATGGATTCTGC 58.242 52.381 0.00 0.00 0.00 4.26
207 208 1.685517 TCTCTCTGATGGATTCTGCCG 59.314 52.381 0.00 0.00 0.00 5.69
209 210 0.467384 CTCTGATGGATTCTGCCGGT 59.533 55.000 1.90 0.00 0.00 5.28
212 222 1.138859 CTGATGGATTCTGCCGGTACA 59.861 52.381 1.90 0.00 0.00 2.90
224 234 2.782615 GGTACACGCGCATGTTCC 59.217 61.111 16.70 16.51 33.52 3.62
228 238 1.017177 TACACGCGCATGTTCCCTTC 61.017 55.000 16.70 0.00 33.85 3.46
229 239 2.034879 CACGCGCATGTTCCCTTCT 61.035 57.895 5.73 0.00 0.00 2.85
230 240 1.741770 ACGCGCATGTTCCCTTCTC 60.742 57.895 5.73 0.00 0.00 2.87
231 241 1.448540 CGCGCATGTTCCCTTCTCT 60.449 57.895 8.75 0.00 0.00 3.10
232 242 1.424493 CGCGCATGTTCCCTTCTCTC 61.424 60.000 8.75 0.00 0.00 3.20
233 243 0.391661 GCGCATGTTCCCTTCTCTCA 60.392 55.000 0.30 0.00 0.00 3.27
234 244 1.745141 GCGCATGTTCCCTTCTCTCAT 60.745 52.381 0.30 0.00 0.00 2.90
235 245 1.938577 CGCATGTTCCCTTCTCTCATG 59.061 52.381 0.00 0.00 38.87 3.07
236 246 2.679059 CGCATGTTCCCTTCTCTCATGT 60.679 50.000 0.00 0.00 38.35 3.21
237 247 2.941720 GCATGTTCCCTTCTCTCATGTC 59.058 50.000 0.00 0.00 38.35 3.06
259 269 1.766143 CTCGCCGTTTATGAGCCAGC 61.766 60.000 0.00 0.00 0.00 4.85
260 270 2.106074 CGCCGTTTATGAGCCAGCA 61.106 57.895 0.00 0.00 0.00 4.41
261 271 1.723870 GCCGTTTATGAGCCAGCAG 59.276 57.895 0.00 0.00 0.00 4.24
278 288 4.643387 GGGTGGCGTGCCTGACTT 62.643 66.667 12.84 0.00 36.94 3.01
279 289 2.345991 GGTGGCGTGCCTGACTTA 59.654 61.111 12.84 0.00 36.94 2.24
280 290 1.302192 GGTGGCGTGCCTGACTTAA 60.302 57.895 12.84 0.00 36.94 1.85
281 291 1.298859 GGTGGCGTGCCTGACTTAAG 61.299 60.000 12.84 0.00 36.94 1.85
282 292 0.320421 GTGGCGTGCCTGACTTAAGA 60.320 55.000 10.09 0.00 36.94 2.10
283 293 0.037326 TGGCGTGCCTGACTTAAGAG 60.037 55.000 10.09 0.00 36.94 2.85
284 294 1.362406 GGCGTGCCTGACTTAAGAGC 61.362 60.000 10.09 7.01 0.00 4.09
285 295 0.670546 GCGTGCCTGACTTAAGAGCA 60.671 55.000 10.09 9.51 0.00 4.26
286 296 2.009042 GCGTGCCTGACTTAAGAGCAT 61.009 52.381 10.09 0.00 35.62 3.79
287 297 1.929836 CGTGCCTGACTTAAGAGCATC 59.070 52.381 10.09 0.00 35.62 3.91
298 308 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
299 309 1.219124 GAGCATCTCCAGCCGTTGA 59.781 57.895 0.00 0.00 0.00 3.18
300 310 0.809241 GAGCATCTCCAGCCGTTGAG 60.809 60.000 0.00 0.00 0.00 3.02
301 311 2.467826 GCATCTCCAGCCGTTGAGC 61.468 63.158 0.00 0.00 0.00 4.26
302 312 1.220206 CATCTCCAGCCGTTGAGCT 59.780 57.895 0.00 0.00 46.45 4.09
303 313 0.392193 CATCTCCAGCCGTTGAGCTT 60.392 55.000 0.00 0.00 42.61 3.74
304 314 0.107945 ATCTCCAGCCGTTGAGCTTC 60.108 55.000 0.00 0.00 42.61 3.86
305 315 1.188219 TCTCCAGCCGTTGAGCTTCT 61.188 55.000 0.00 0.00 42.61 2.85
306 316 0.739112 CTCCAGCCGTTGAGCTTCTC 60.739 60.000 0.00 0.00 42.61 2.87
307 317 1.004560 CCAGCCGTTGAGCTTCTCA 60.005 57.895 0.00 0.00 42.61 3.27
308 318 0.603707 CCAGCCGTTGAGCTTCTCAA 60.604 55.000 5.25 5.25 46.50 3.02
317 327 4.942761 TTGAGCTTCTCAAAAGGCATTT 57.057 36.364 6.78 0.00 45.84 2.32
318 328 4.942761 TGAGCTTCTCAAAAGGCATTTT 57.057 36.364 2.67 2.67 37.57 1.82
319 329 5.280654 TGAGCTTCTCAAAAGGCATTTTT 57.719 34.783 6.30 0.00 37.57 1.94
342 352 3.435186 GCTTGGAAGGCTGCCGAC 61.435 66.667 13.96 11.11 0.00 4.79
343 353 3.121030 CTTGGAAGGCTGCCGACG 61.121 66.667 13.96 0.00 0.00 5.12
344 354 3.589654 CTTGGAAGGCTGCCGACGA 62.590 63.158 13.96 5.91 0.00 4.20
345 355 2.859273 CTTGGAAGGCTGCCGACGAT 62.859 60.000 13.96 0.00 0.00 3.73
346 356 1.609635 TTGGAAGGCTGCCGACGATA 61.610 55.000 13.96 0.00 0.00 2.92
347 357 1.143183 GGAAGGCTGCCGACGATAA 59.857 57.895 13.96 0.00 0.00 1.75
348 358 0.249911 GGAAGGCTGCCGACGATAAT 60.250 55.000 13.96 0.00 0.00 1.28
349 359 1.583054 GAAGGCTGCCGACGATAATT 58.417 50.000 13.96 0.00 0.00 1.40
350 360 1.940613 GAAGGCTGCCGACGATAATTT 59.059 47.619 13.96 0.00 0.00 1.82
351 361 2.038387 AGGCTGCCGACGATAATTTT 57.962 45.000 13.96 0.00 0.00 1.82
352 362 3.188159 AGGCTGCCGACGATAATTTTA 57.812 42.857 13.96 0.00 0.00 1.52
353 363 3.131396 AGGCTGCCGACGATAATTTTAG 58.869 45.455 13.96 0.00 0.00 1.85
354 364 2.349532 GGCTGCCGACGATAATTTTAGC 60.350 50.000 1.35 0.00 0.00 3.09
355 365 2.349532 GCTGCCGACGATAATTTTAGCC 60.350 50.000 0.00 0.00 0.00 3.93
356 366 3.131396 CTGCCGACGATAATTTTAGCCT 58.869 45.455 0.00 0.00 0.00 4.58
357 367 2.869801 TGCCGACGATAATTTTAGCCTG 59.130 45.455 0.00 0.00 0.00 4.85
358 368 2.223377 GCCGACGATAATTTTAGCCTGG 59.777 50.000 0.00 0.00 0.00 4.45
359 369 2.806244 CCGACGATAATTTTAGCCTGGG 59.194 50.000 0.00 0.00 0.00 4.45
360 370 3.463944 CGACGATAATTTTAGCCTGGGT 58.536 45.455 2.98 2.98 0.00 4.51
361 371 3.247648 CGACGATAATTTTAGCCTGGGTG 59.752 47.826 9.02 0.00 0.00 4.61
362 372 4.196971 GACGATAATTTTAGCCTGGGTGT 58.803 43.478 9.02 0.00 0.00 4.16
363 373 4.196971 ACGATAATTTTAGCCTGGGTGTC 58.803 43.478 9.02 0.00 0.00 3.67
364 374 4.196193 CGATAATTTTAGCCTGGGTGTCA 58.804 43.478 9.02 0.00 0.00 3.58
365 375 4.638421 CGATAATTTTAGCCTGGGTGTCAA 59.362 41.667 9.02 0.00 0.00 3.18
366 376 5.124776 CGATAATTTTAGCCTGGGTGTCAAA 59.875 40.000 9.02 5.51 0.00 2.69
367 377 6.349777 CGATAATTTTAGCCTGGGTGTCAAAA 60.350 38.462 9.02 8.00 0.00 2.44
368 378 5.622346 AATTTTAGCCTGGGTGTCAAAAA 57.378 34.783 9.02 7.64 0.00 1.94
387 397 4.841443 AAAAATTACACTCGTTGTCCCC 57.159 40.909 0.00 0.00 39.91 4.81
388 398 2.088950 AATTACACTCGTTGTCCCCG 57.911 50.000 0.00 0.00 39.91 5.73
389 399 0.390735 ATTACACTCGTTGTCCCCGC 60.391 55.000 0.00 0.00 39.91 6.13
390 400 1.746322 TTACACTCGTTGTCCCCGCA 61.746 55.000 0.00 0.00 39.91 5.69
391 401 2.149803 TACACTCGTTGTCCCCGCAG 62.150 60.000 0.00 0.00 39.91 5.18
517 741 2.233271 GCAGATGAGAGGAGAGAGAGG 58.767 57.143 0.00 0.00 0.00 3.69
552 778 6.755542 AGGAAAAAGAAAAGAGAGGAGAGA 57.244 37.500 0.00 0.00 0.00 3.10
554 780 5.937540 GGAAAAAGAAAAGAGAGGAGAGAGG 59.062 44.000 0.00 0.00 0.00 3.69
555 781 6.239743 GGAAAAAGAAAAGAGAGGAGAGAGGA 60.240 42.308 0.00 0.00 0.00 3.71
559 785 4.540099 AGAAAAGAGAGGAGAGAGGAGAGA 59.460 45.833 0.00 0.00 0.00 3.10
560 786 4.510167 AAAGAGAGGAGAGAGGAGAGAG 57.490 50.000 0.00 0.00 0.00 3.20
600 842 3.096092 TGGGGCAATCAGATTGGTTAAC 58.904 45.455 22.25 7.12 40.57 2.01
601 843 3.096092 GGGGCAATCAGATTGGTTAACA 58.904 45.455 22.25 0.00 40.57 2.41
609 851 4.295051 TCAGATTGGTTAACAAAAAGCGC 58.705 39.130 8.10 0.00 43.46 5.92
680 922 5.504173 GCCAGCTGTATTTTTCGTCTAATCC 60.504 44.000 13.81 0.00 0.00 3.01
681 923 5.276868 CCAGCTGTATTTTTCGTCTAATCCG 60.277 44.000 13.81 0.00 0.00 4.18
684 926 3.552699 TGTATTTTTCGTCTAATCCGGCG 59.447 43.478 0.00 0.00 0.00 6.46
694 936 2.494471 TCTAATCCGGCGAAAAGTGAGA 59.506 45.455 9.30 0.00 0.00 3.27
702 944 1.066143 GCGAAAAGTGAGATCCTGGGA 60.066 52.381 0.00 0.00 0.00 4.37
711 954 1.381327 GATCCTGGGACCCGAGTGA 60.381 63.158 5.91 0.00 0.00 3.41
717 961 2.593956 GGGACCCGAGTGAGGCTTT 61.594 63.158 0.00 0.00 0.00 3.51
785 1029 2.860582 GCGCTAGTGGAGATGCTCTAAC 60.861 54.545 0.00 0.00 0.00 2.34
805 1049 5.843019 AACTCTTGTTTGATTCCCTCCTA 57.157 39.130 0.00 0.00 31.37 2.94
831 1078 4.675408 GCTTAGTTAGCTCCCAAATTGCAC 60.675 45.833 0.00 0.00 46.77 4.57
859 1106 5.450412 CCAAATAGTTCGCTGGCAAATATGT 60.450 40.000 0.00 0.00 0.00 2.29
895 1142 5.630680 GCCATTAACACAGTTGATTTGTCTG 59.369 40.000 0.00 0.00 35.60 3.51
910 1157 6.316890 TGATTTGTCTGTGTCATGTGGATATG 59.683 38.462 0.00 0.00 0.00 1.78
983 1240 8.149647 CCTCATTGATTAGGATATATCTGGCTC 58.850 40.741 12.42 5.98 34.58 4.70
1060 1318 4.667948 CGCTCGTTAAATATACGTCGTTCT 59.332 41.667 1.78 0.00 39.84 3.01
1096 1354 0.532573 TCGGCTCGATCTTGCTTCTT 59.467 50.000 6.73 0.00 0.00 2.52
1103 1361 4.439426 GCTCGATCTTGCTTCTTCTACTCA 60.439 45.833 0.00 0.00 0.00 3.41
1104 1362 5.735922 GCTCGATCTTGCTTCTTCTACTCAT 60.736 44.000 0.00 0.00 0.00 2.90
1105 1363 5.826586 TCGATCTTGCTTCTTCTACTCATC 58.173 41.667 0.00 0.00 0.00 2.92
1106 1364 5.358160 TCGATCTTGCTTCTTCTACTCATCA 59.642 40.000 0.00 0.00 0.00 3.07
1107 1365 5.686841 CGATCTTGCTTCTTCTACTCATCAG 59.313 44.000 0.00 0.00 0.00 2.90
1242 1509 4.785453 GGCGGTGGCAGAAGGAGG 62.785 72.222 0.00 0.00 42.47 4.30
1364 1631 2.712057 CCAAGCATGGTTCTGTGAAC 57.288 50.000 7.29 2.16 42.18 3.18
1433 1701 1.203063 GGGGGACTTCTGCTCCTTTTT 60.203 52.381 0.00 0.00 0.00 1.94
1442 1710 1.002468 CTGCTCCTTTTTCGGTGTGTG 60.002 52.381 0.00 0.00 0.00 3.82
1500 1772 3.764885 GCTGATAGCTAGCTAGAGAGC 57.235 52.381 27.42 26.05 43.08 4.09
1525 1797 5.390567 GCAAAAGTTTACGGATGTGTAGAGG 60.391 44.000 0.00 0.00 0.00 3.69
1527 1799 2.764572 AGTTTACGGATGTGTAGAGGGG 59.235 50.000 0.00 0.00 0.00 4.79
1569 1843 4.937620 GTGGATTATCAAGAGTTGTCTGCA 59.062 41.667 0.00 0.00 31.37 4.41
1570 1844 5.412594 GTGGATTATCAAGAGTTGTCTGCAA 59.587 40.000 0.00 0.00 31.37 4.08
1595 1869 3.825611 GGCGCCGGTCGGTAGTTA 61.826 66.667 12.58 0.00 38.94 2.24
1596 1870 2.278401 GCGCCGGTCGGTAGTTAG 60.278 66.667 17.73 0.00 38.94 2.34
1597 1871 3.056313 GCGCCGGTCGGTAGTTAGT 62.056 63.158 17.73 0.00 38.94 2.24
1598 1872 1.508088 CGCCGGTCGGTAGTTAGTT 59.492 57.895 11.25 0.00 37.65 2.24
1606 1880 4.443394 CGGTCGGTAGTTAGTTTCATATGC 59.557 45.833 0.00 0.00 0.00 3.14
1609 1883 5.462398 GTCGGTAGTTAGTTTCATATGCCTG 59.538 44.000 0.00 0.00 0.00 4.85
1637 1911 3.499737 GAATCCAGTGGCGCACGG 61.500 66.667 10.83 11.28 39.64 4.94
1693 1968 3.114616 TGCTTCTTGCGCTCGAGC 61.115 61.111 27.64 27.64 46.63 5.03
1694 1969 3.858989 GCTTCTTGCGCTCGAGCC 61.859 66.667 30.66 22.70 37.91 4.70
1695 1970 2.125753 CTTCTTGCGCTCGAGCCT 60.126 61.111 30.66 0.00 37.91 4.58
1696 1971 2.125912 TTCTTGCGCTCGAGCCTC 60.126 61.111 30.66 22.19 37.91 4.70
1697 1972 3.971453 TTCTTGCGCTCGAGCCTCG 62.971 63.158 30.66 18.30 42.10 4.63
1708 1983 2.124109 AGCCTCGAGATCGCTCCA 60.124 61.111 15.71 0.00 37.91 3.86
1741 2016 1.601171 GGCACTCAGATCCAGCTGT 59.399 57.895 13.81 0.00 37.20 4.40
1763 2038 2.436824 GCCGTTTCTCTGCCTCCC 60.437 66.667 0.00 0.00 0.00 4.30
1764 2039 2.960688 GCCGTTTCTCTGCCTCCCT 61.961 63.158 0.00 0.00 0.00 4.20
1864 2143 2.484287 ATATACCAGCGGGCCCATGC 62.484 60.000 24.92 18.76 37.90 4.06
1880 2159 2.743928 GCTGTCAAGCCCGTCTGG 60.744 66.667 0.00 0.00 44.22 3.86
1881 2160 3.059982 CTGTCAAGCCCGTCTGGA 58.940 61.111 0.00 0.00 37.49 3.86
1882 2161 1.079543 CTGTCAAGCCCGTCTGGAG 60.080 63.158 0.00 0.00 37.49 3.86
1883 2162 1.821061 CTGTCAAGCCCGTCTGGAGT 61.821 60.000 0.00 0.00 37.49 3.85
1884 2163 1.374758 GTCAAGCCCGTCTGGAGTG 60.375 63.158 0.00 0.00 37.49 3.51
1885 2164 1.837051 TCAAGCCCGTCTGGAGTGT 60.837 57.895 0.00 0.00 37.49 3.55
1886 2165 1.669115 CAAGCCCGTCTGGAGTGTG 60.669 63.158 0.00 0.00 37.49 3.82
1887 2166 2.883828 AAGCCCGTCTGGAGTGTGG 61.884 63.158 0.00 0.00 37.49 4.17
1890 2169 1.327690 GCCCGTCTGGAGTGTGGATA 61.328 60.000 0.00 0.00 37.49 2.59
1896 2678 2.771943 GTCTGGAGTGTGGATATTCCCA 59.228 50.000 0.00 0.00 35.03 4.37
1898 2680 3.648067 TCTGGAGTGTGGATATTCCCATC 59.352 47.826 0.00 0.00 38.66 3.51
1909 2691 5.433051 TGGATATTCCCATCTCTGAAGGTTT 59.567 40.000 0.00 0.00 35.03 3.27
1922 2704 3.607741 TGAAGGTTTTGTGTTGGTCGTA 58.392 40.909 0.00 0.00 0.00 3.43
1928 2710 3.863396 TTTGTGTTGGTCGTATGTTCG 57.137 42.857 0.00 0.00 0.00 3.95
1933 2715 1.389106 GTTGGTCGTATGTTCGCTCAC 59.611 52.381 0.00 0.00 0.00 3.51
1947 2729 2.492484 TCGCTCACTTTTCTCTACTCCC 59.508 50.000 0.00 0.00 0.00 4.30
1949 2731 3.118956 CGCTCACTTTTCTCTACTCCCAT 60.119 47.826 0.00 0.00 0.00 4.00
1965 2755 1.864669 CCATATGTGGGGCCTTTTGT 58.135 50.000 0.84 0.00 42.11 2.83
1966 2756 1.481772 CCATATGTGGGGCCTTTTGTG 59.518 52.381 0.84 0.00 42.11 3.33
1967 2757 2.455557 CATATGTGGGGCCTTTTGTGA 58.544 47.619 0.84 0.00 0.00 3.58
2007 2802 2.552315 TCAGAAACGCTTCAAATCACCC 59.448 45.455 0.78 0.00 33.64 4.61
2013 2808 1.369625 GCTTCAAATCACCCGACGAT 58.630 50.000 0.00 0.00 0.00 3.73
2014 2809 1.327764 GCTTCAAATCACCCGACGATC 59.672 52.381 0.00 0.00 0.00 3.69
2015 2810 1.933853 CTTCAAATCACCCGACGATCC 59.066 52.381 0.00 0.00 0.00 3.36
2094 2898 2.458592 GCAGTGCGTTATCATGTTCC 57.541 50.000 0.00 0.00 0.00 3.62
2095 2899 1.064060 GCAGTGCGTTATCATGTTCCC 59.936 52.381 0.00 0.00 0.00 3.97
2096 2900 1.670811 CAGTGCGTTATCATGTTCCCC 59.329 52.381 0.00 0.00 0.00 4.81
2098 2902 2.026262 AGTGCGTTATCATGTTCCCCTT 60.026 45.455 0.00 0.00 0.00 3.95
2103 2912 3.288092 GTTATCATGTTCCCCTTCCCAC 58.712 50.000 0.00 0.00 0.00 4.61
2111 2920 0.547712 TCCCCTTCCCACCAGAGAAG 60.548 60.000 0.00 0.00 39.38 2.85
2118 2927 0.679505 CCCACCAGAGAAGTCACGAA 59.320 55.000 0.00 0.00 0.00 3.85
2128 2937 3.665190 AGAAGTCACGAATTGTCTTCCC 58.335 45.455 7.38 0.00 46.05 3.97
2143 2952 1.680735 CTTCCCTCTCCTCATCGTCAG 59.319 57.143 0.00 0.00 0.00 3.51
2157 2966 0.792640 CGTCAGCATCGAAGCAAACT 59.207 50.000 15.84 0.00 36.85 2.66
2159 2968 2.411748 CGTCAGCATCGAAGCAAACTAA 59.588 45.455 15.84 0.00 36.85 2.24
2173 2982 1.007336 AACTAAACCAGCGCGTCGAG 61.007 55.000 8.43 0.00 0.00 4.04
2180 2989 2.125229 AGCGCGTCGAGTCCTCTA 60.125 61.111 8.43 0.00 0.00 2.43
2181 2990 1.524165 AGCGCGTCGAGTCCTCTAT 60.524 57.895 8.43 0.00 0.00 1.98
2190 2999 2.950309 TCGAGTCCTCTATTTTCCCTCG 59.050 50.000 0.00 0.00 41.07 4.63
2210 3019 2.279069 CCTCACACACCGCTCCTCT 61.279 63.158 0.00 0.00 0.00 3.69
2213 3022 2.524394 ACACACCGCTCCTCTGGT 60.524 61.111 0.00 0.00 39.66 4.00
2224 3033 1.898472 CTCCTCTGGTGAGCTCAAGAA 59.102 52.381 20.19 6.02 38.93 2.52
2252 3061 3.451894 GATGTTGCAAGGCCGGGG 61.452 66.667 2.18 0.00 0.00 5.73
2268 3077 3.133464 GGCATGGCGCTGCAACTA 61.133 61.111 21.36 0.00 44.12 2.24
2280 3089 1.079405 GCAACTAGCCCGCACACTA 60.079 57.895 0.00 0.00 37.23 2.74
2303 3112 1.079438 AAGGGAAGAGAGAGGCGGT 59.921 57.895 0.00 0.00 0.00 5.68
2304 3113 0.335361 AAGGGAAGAGAGAGGCGGTA 59.665 55.000 0.00 0.00 0.00 4.02
2309 3118 0.466555 AAGAGAGAGGCGGTAGCGAT 60.467 55.000 20.16 5.21 46.35 4.58
2337 3146 6.295236 CCCATGGTGTTTCTAAAACATCACAT 60.295 38.462 17.94 14.09 43.20 3.21
2344 3153 7.487829 GTGTTTCTAAAACATCACATGTGTTGT 59.512 33.333 28.73 28.73 44.07 3.32
2348 3157 8.310406 TCTAAAACATCACATGTGTTGTAGAG 57.690 34.615 32.32 27.41 45.03 2.43
2349 3158 5.947228 AAACATCACATGTGTTGTAGAGG 57.053 39.130 32.32 15.72 44.07 3.69
2350 3159 3.338249 ACATCACATGTGTTGTAGAGGC 58.662 45.455 31.57 0.00 43.01 4.70
2351 3160 2.472695 TCACATGTGTTGTAGAGGCC 57.527 50.000 24.63 0.00 36.57 5.19
2386 3195 1.134280 AGCTCGCCAGATTGCTATGTT 60.134 47.619 0.00 0.00 33.64 2.71
2387 3196 1.003116 GCTCGCCAGATTGCTATGTTG 60.003 52.381 0.00 0.00 0.00 3.33
2390 3199 1.004610 CGCCAGATTGCTATGTTGTCG 60.005 52.381 0.00 0.00 0.00 4.35
2392 3201 2.874701 GCCAGATTGCTATGTTGTCGAT 59.125 45.455 0.00 0.00 0.00 3.59
2410 3219 5.106197 TGTCGATGTTTCTGAAATCATTGGG 60.106 40.000 20.46 13.31 0.00 4.12
2416 3225 2.886913 TCTGAAATCATTGGGGTTGCA 58.113 42.857 0.00 0.00 0.00 4.08
2434 3243 2.978010 GAGGTGTGGGTGTTGCGG 60.978 66.667 0.00 0.00 0.00 5.69
2458 3275 1.523154 GCCCGATTGCAACTTCACCA 61.523 55.000 0.00 0.00 0.00 4.17
2468 3285 2.034053 GCAACTTCACCATTGGTTTCGA 59.966 45.455 5.34 0.00 31.02 3.71
2496 3313 1.354337 CTGATGTTGCGGAGACACGG 61.354 60.000 0.00 0.00 0.00 4.94
2520 3337 2.869646 CGAGCTTGCCGAATTGCA 59.130 55.556 0.00 0.00 40.07 4.08
2523 3340 1.067199 GAGCTTGCCGAATTGCAACG 61.067 55.000 0.00 1.03 45.77 4.10
2524 3341 2.719774 GCTTGCCGAATTGCAACGC 61.720 57.895 0.00 1.66 45.77 4.84
2526 3343 0.167908 CTTGCCGAATTGCAACGCTA 59.832 50.000 0.00 0.00 45.77 4.26
2527 3344 0.808125 TTGCCGAATTGCAACGCTAT 59.192 45.000 0.00 0.00 45.77 2.97
2532 3349 3.303725 GCCGAATTGCAACGCTATTGATA 60.304 43.478 0.00 0.00 34.57 2.15
2536 3353 6.417635 CCGAATTGCAACGCTATTGATATTTT 59.582 34.615 0.00 0.00 34.57 1.82
2539 3356 8.700722 AATTGCAACGCTATTGATATTTTTGA 57.299 26.923 0.00 0.00 33.35 2.69
2560 3378 6.159299 TGAAACATGGTTGATTTGTGATGT 57.841 33.333 0.00 0.00 0.00 3.06
2567 3385 7.336427 ACATGGTTGATTTGTGATGTTGTTTTT 59.664 29.630 0.00 0.00 0.00 1.94
2569 3387 6.652481 TGGTTGATTTGTGATGTTGTTTTTGT 59.348 30.769 0.00 0.00 0.00 2.83
2570 3388 6.960431 GGTTGATTTGTGATGTTGTTTTTGTG 59.040 34.615 0.00 0.00 0.00 3.33
2584 3402 1.909700 TTTGTGAAGGGAGGATGCAC 58.090 50.000 0.00 0.00 0.00 4.57
2677 3495 1.067000 GGATGAGCGAGATGAGGGATG 60.067 57.143 0.00 0.00 0.00 3.51
2753 3572 2.375173 AAAGTTATCACCCGACCGAC 57.625 50.000 0.00 0.00 0.00 4.79
2780 3599 6.472163 CGTAGCAATGACCCAAATAAAATGTC 59.528 38.462 0.00 0.00 0.00 3.06
2789 3608 5.183140 ACCCAAATAAAATGTCGAGGAAGTG 59.817 40.000 0.00 0.00 0.00 3.16
2807 3634 1.282157 GTGGAAGGTTGGTCTAGGCAT 59.718 52.381 0.00 0.00 0.00 4.40
2814 3641 2.290960 GGTTGGTCTAGGCATGGTTCTT 60.291 50.000 0.00 0.00 0.00 2.52
2833 3660 3.864686 CTTCCATTCCACCGCGCG 61.865 66.667 25.67 25.67 0.00 6.86
2843 3670 2.203015 ACCGCGCGGCTGATAAAT 60.203 55.556 46.22 23.82 39.32 1.40
2860 3688 5.827797 TGATAAATCCCTCCCAATCTTTTCG 59.172 40.000 0.00 0.00 0.00 3.46
2864 3692 3.418047 TCCCTCCCAATCTTTTCGTTTC 58.582 45.455 0.00 0.00 0.00 2.78
2875 3703 4.274978 TCTTTTCGTTTCCCCTTTTCACT 58.725 39.130 0.00 0.00 0.00 3.41
2876 3704 4.097286 TCTTTTCGTTTCCCCTTTTCACTG 59.903 41.667 0.00 0.00 0.00 3.66
2877 3705 1.975660 TCGTTTCCCCTTTTCACTGG 58.024 50.000 0.00 0.00 0.00 4.00
2901 3729 5.568620 AATGGAAAGTAGTGGTCAGTTCT 57.431 39.130 0.00 0.00 0.00 3.01
2921 3749 2.450609 ATTCGTTACTCACTTGCCGT 57.549 45.000 0.00 0.00 0.00 5.68
2931 3759 0.532862 CACTTGCCGTGGAGTTGACT 60.533 55.000 0.00 0.00 40.02 3.41
3076 3905 8.721478 GGTATTGGTATATGCTATTGAACTGTG 58.279 37.037 0.00 0.00 0.00 3.66
3078 3907 8.752005 ATTGGTATATGCTATTGAACTGTGTT 57.248 30.769 0.00 0.00 0.00 3.32
3084 3913 5.673337 TGCTATTGAACTGTGTTTCTCAC 57.327 39.130 0.00 0.00 46.31 3.51
3236 4065 3.265791 GAACAAGAGCTGGATCGTCAAT 58.734 45.455 0.00 0.00 0.00 2.57
3245 4074 1.405463 TGGATCGTCAATCTCGAGGTG 59.595 52.381 13.56 11.41 40.57 4.00
3286 4115 5.314923 ACAGTGGTGCATGTATGATTTTC 57.685 39.130 0.00 0.00 0.00 2.29
3301 4130 3.566742 TGATTTTCCCTGATCGATGCATG 59.433 43.478 2.46 0.00 0.00 4.06
3302 4131 1.311859 TTTCCCTGATCGATGCATGC 58.688 50.000 11.82 11.82 0.00 4.06
3407 4236 5.396548 CCAACTTCATGGAGAGACAGATCAT 60.397 44.000 8.39 0.00 43.54 2.45
3463 4300 0.034960 TCCTGGTCCGTCTCTCTCAG 60.035 60.000 0.00 0.00 0.00 3.35
3492 4329 4.119442 AGCAAAGATGGTTTCATGCATC 57.881 40.909 0.00 3.58 40.17 3.91
3501 4338 7.883217 AGATGGTTTCATGCATCATTAATCTC 58.117 34.615 11.93 0.00 32.98 2.75
3502 4339 6.063640 TGGTTTCATGCATCATTAATCTCG 57.936 37.500 0.00 0.00 0.00 4.04
3521 4358 1.658994 GGGCGAACGAAATGTATGGA 58.341 50.000 0.00 0.00 0.00 3.41
3522 4359 1.597663 GGGCGAACGAAATGTATGGAG 59.402 52.381 0.00 0.00 0.00 3.86
3523 4360 2.277084 GGCGAACGAAATGTATGGAGT 58.723 47.619 0.00 0.00 0.00 3.85
3524 4361 3.450578 GGCGAACGAAATGTATGGAGTA 58.549 45.455 0.00 0.00 0.00 2.59
3551 4388 3.404564 GACGTACGACATGTGCATTTTC 58.595 45.455 24.41 0.00 31.89 2.29
3639 4478 3.244105 CCTTCGACAAGGTGCGTG 58.756 61.111 0.00 0.00 44.11 5.34
3641 4480 1.557443 CCTTCGACAAGGTGCGTGTC 61.557 60.000 0.00 0.00 44.11 3.67
3647 4486 1.594293 CAAGGTGCGTGTCGGTTCT 60.594 57.895 0.00 0.00 0.00 3.01
3651 4490 0.509929 GGTGCGTGTCGGTTCTTTAC 59.490 55.000 0.00 0.00 0.00 2.01
3662 4501 3.312973 TCGGTTCTTTACACGCAACAATT 59.687 39.130 0.00 0.00 0.00 2.32
3684 4523 1.592081 GTCAGCTCTTCATGCATCGAC 59.408 52.381 0.00 0.00 0.00 4.20
3690 4529 2.040213 CTTCATGCATCGACCCGTGC 62.040 60.000 0.00 1.74 41.61 5.34
3693 4532 3.315142 ATGCATCGACCCGTGCTGT 62.315 57.895 9.89 0.00 41.78 4.40
3699 4538 1.153568 CGACCCGTGCTGTCATCAT 60.154 57.895 0.00 0.00 32.91 2.45
3700 4539 1.148157 CGACCCGTGCTGTCATCATC 61.148 60.000 0.00 0.00 32.91 2.92
3701 4540 0.108186 GACCCGTGCTGTCATCATCA 60.108 55.000 0.00 0.00 32.91 3.07
3702 4541 0.543277 ACCCGTGCTGTCATCATCAT 59.457 50.000 0.00 0.00 0.00 2.45
3703 4542 1.224075 CCCGTGCTGTCATCATCATC 58.776 55.000 0.00 0.00 0.00 2.92
3713 4552 5.581479 GCTGTCATCATCATCATCATCCTAC 59.419 44.000 0.00 0.00 0.00 3.18
3714 4553 6.675413 TGTCATCATCATCATCATCCTACA 57.325 37.500 0.00 0.00 0.00 2.74
3719 4558 9.582648 TCATCATCATCATCATCCTACATTTTT 57.417 29.630 0.00 0.00 0.00 1.94
3726 4565 6.958255 TCATCATCCTACATTTTTACGCATG 58.042 36.000 0.00 0.00 0.00 4.06
3729 4568 7.189693 TCATCCTACATTTTTACGCATGATC 57.810 36.000 0.00 0.00 0.00 2.92
3731 4570 6.603237 TCCTACATTTTTACGCATGATCTG 57.397 37.500 0.00 0.00 0.00 2.90
3732 4571 6.345298 TCCTACATTTTTACGCATGATCTGA 58.655 36.000 0.00 0.00 0.00 3.27
3733 4572 6.992123 TCCTACATTTTTACGCATGATCTGAT 59.008 34.615 0.00 0.00 0.00 2.90
3736 4575 7.325660 ACATTTTTACGCATGATCTGATCTT 57.674 32.000 17.82 9.46 0.00 2.40
3738 4577 7.912250 ACATTTTTACGCATGATCTGATCTTTC 59.088 33.333 17.82 6.22 0.00 2.62
3740 4579 7.615582 TTTTACGCATGATCTGATCTTTCTT 57.384 32.000 17.82 3.81 0.00 2.52
3741 4580 6.834959 TTACGCATGATCTGATCTTTCTTC 57.165 37.500 17.82 2.19 0.00 2.87
3742 4581 5.021033 ACGCATGATCTGATCTTTCTTCT 57.979 39.130 17.82 0.00 0.00 2.85
3743 4582 5.049167 ACGCATGATCTGATCTTTCTTCTC 58.951 41.667 17.82 0.00 0.00 2.87
3744 4583 5.163426 ACGCATGATCTGATCTTTCTTCTCT 60.163 40.000 17.82 0.00 0.00 3.10
3745 4584 5.176039 CGCATGATCTGATCTTTCTTCTCTG 59.824 44.000 17.82 0.32 0.00 3.35
3746 4585 6.050432 GCATGATCTGATCTTTCTTCTCTGT 58.950 40.000 17.82 0.00 0.00 3.41
3747 4586 7.208777 GCATGATCTGATCTTTCTTCTCTGTA 58.791 38.462 17.82 0.00 0.00 2.74
3748 4587 7.874016 GCATGATCTGATCTTTCTTCTCTGTAT 59.126 37.037 17.82 0.00 0.00 2.29
3749 4588 9.198837 CATGATCTGATCTTTCTTCTCTGTATG 57.801 37.037 17.82 5.53 0.00 2.39
3750 4589 8.303780 TGATCTGATCTTTCTTCTCTGTATGT 57.696 34.615 17.82 0.00 0.00 2.29
3974 4813 2.202492 CCTCTTCCTCGACGCGTG 60.202 66.667 20.70 9.70 0.00 5.34
3992 4831 3.485013 GCGTGCGTCTACTTATTTACCTC 59.515 47.826 0.00 0.00 0.00 3.85
3993 4832 4.040376 CGTGCGTCTACTTATTTACCTCC 58.960 47.826 0.00 0.00 0.00 4.30
3994 4833 4.201990 CGTGCGTCTACTTATTTACCTCCT 60.202 45.833 0.00 0.00 0.00 3.69
3996 4835 4.036027 TGCGTCTACTTATTTACCTCCTCG 59.964 45.833 0.00 0.00 0.00 4.63
3998 4837 5.560567 GCGTCTACTTATTTACCTCCTCGAG 60.561 48.000 5.13 5.13 0.00 4.04
4001 4840 7.387397 CGTCTACTTATTTACCTCCTCGAGTAT 59.613 40.741 12.31 0.00 0.00 2.12
4017 4856 6.292221 CCTCGAGTATATATACATCACCGTCG 60.292 46.154 22.00 18.86 35.74 5.12
4025 4864 1.212751 CATCACCGTCGCTCTCACA 59.787 57.895 0.00 0.00 0.00 3.58
4027 4866 1.244697 ATCACCGTCGCTCTCACAGT 61.245 55.000 0.00 0.00 0.00 3.55
4028 4867 1.442857 CACCGTCGCTCTCACAGTC 60.443 63.158 0.00 0.00 0.00 3.51
4029 4868 1.601197 ACCGTCGCTCTCACAGTCT 60.601 57.895 0.00 0.00 0.00 3.24
4030 4869 1.135731 CCGTCGCTCTCACAGTCTC 59.864 63.158 0.00 0.00 0.00 3.36
4031 4870 1.578206 CCGTCGCTCTCACAGTCTCA 61.578 60.000 0.00 0.00 0.00 3.27
4038 4877 0.681733 TCTCACAGTCTCAACCCAGC 59.318 55.000 0.00 0.00 0.00 4.85
4195 5034 0.110419 TGCGTGCGTGCTTCATTTAC 60.110 50.000 1.52 0.00 35.36 2.01
4196 5035 0.165944 GCGTGCGTGCTTCATTTACT 59.834 50.000 0.00 0.00 0.00 2.24
4197 5036 1.399727 GCGTGCGTGCTTCATTTACTT 60.400 47.619 0.00 0.00 0.00 2.24
4201 5040 3.664025 GTGCGTGCTTCATTTACTTGTTC 59.336 43.478 0.00 0.00 0.00 3.18
4202 5041 3.313803 TGCGTGCTTCATTTACTTGTTCA 59.686 39.130 0.00 0.00 0.00 3.18
4224 5063 3.476295 TTGCGTGCAAGAAAGATCATC 57.524 42.857 2.99 0.00 0.00 2.92
4228 5067 2.416547 CGTGCAAGAAAGATCATCCGTT 59.583 45.455 0.00 0.00 0.00 4.44
4230 5069 4.492570 CGTGCAAGAAAGATCATCCGTTAC 60.493 45.833 0.00 0.00 0.00 2.50
4232 5071 5.810587 GTGCAAGAAAGATCATCCGTTACTA 59.189 40.000 0.00 0.00 0.00 1.82
4234 5073 6.876789 TGCAAGAAAGATCATCCGTTACTAAA 59.123 34.615 0.00 0.00 0.00 1.85
4235 5074 7.389330 TGCAAGAAAGATCATCCGTTACTAAAA 59.611 33.333 0.00 0.00 0.00 1.52
4236 5075 8.234546 GCAAGAAAGATCATCCGTTACTAAAAA 58.765 33.333 0.00 0.00 0.00 1.94
4242 5081 9.892130 AAGATCATCCGTTACTAAAAATTCTCT 57.108 29.630 0.00 0.00 0.00 3.10
4243 5082 9.892130 AGATCATCCGTTACTAAAAATTCTCTT 57.108 29.630 0.00 0.00 0.00 2.85
4247 5086 9.893305 CATCCGTTACTAAAAATTCTCTTTTGT 57.107 29.630 0.00 0.00 31.15 2.83
4249 5088 8.277713 TCCGTTACTAAAAATTCTCTTTTGTCG 58.722 33.333 0.00 0.00 31.15 4.35
4250 5089 8.277713 CCGTTACTAAAAATTCTCTTTTGTCGA 58.722 33.333 0.00 0.00 31.15 4.20
4253 5092 9.607285 TTACTAAAAATTCTCTTTTGTCGATGC 57.393 29.630 0.00 0.00 31.15 3.91
4255 5094 3.747099 AATTCTCTTTTGTCGATGCCG 57.253 42.857 0.00 0.00 37.07 5.69
4315 5173 7.597288 TCTTCCCTCAGAATATAATCGACAA 57.403 36.000 0.00 0.00 32.82 3.18
4379 5237 5.760253 CGTCTGGCAGGTAATCAGATATTTT 59.240 40.000 15.73 0.00 39.36 1.82
4449 5308 3.347216 AGCTAGCAAATGTGACGGAAAT 58.653 40.909 18.83 0.00 0.00 2.17
4460 5319 9.013490 CAAATGTGACGGAAATTTAATCAGATC 57.987 33.333 8.17 0.00 0.00 2.75
4529 5388 1.576421 CTGCAAGTTCAACCGCTCC 59.424 57.895 1.55 0.00 0.00 4.70
4559 5418 4.111375 TGCGTCTCAGATAAACTTCCTC 57.889 45.455 0.00 0.00 0.00 3.71
4585 5496 6.937436 AGGTAAAAGAACAATTCAACTCGT 57.063 33.333 0.00 0.00 0.00 4.18
4590 5501 6.436843 AAAGAACAATTCAACTCGTCACTT 57.563 33.333 0.00 0.00 0.00 3.16
4591 5502 5.409643 AGAACAATTCAACTCGTCACTTG 57.590 39.130 0.00 0.00 0.00 3.16
4608 5523 5.237779 GTCACTTGAAACCTAACCGATTGAA 59.762 40.000 0.00 0.00 0.00 2.69
4616 5533 8.533657 TGAAACCTAACCGATTGAATAACTAGA 58.466 33.333 0.00 0.00 0.00 2.43
4626 5543 6.093495 CGATTGAATAACTAGAACCAAAGCCA 59.907 38.462 0.00 0.00 0.00 4.75
4692 5610 3.259374 TGAAGTGAGGATCTGGACAACTC 59.741 47.826 0.00 0.00 34.92 3.01
4697 5615 0.902531 GGATCTGGACAACTCCCGAA 59.097 55.000 0.00 0.00 33.80 4.30
4738 5656 5.823209 TGTTCACATATGCAGATTTCAGG 57.177 39.130 1.58 0.00 0.00 3.86
4741 5659 4.711399 TCACATATGCAGATTTCAGGGAG 58.289 43.478 1.58 0.00 0.00 4.30
4756 5674 1.530771 GGAGCAGATGGTGGCATCT 59.469 57.895 0.00 0.00 42.18 2.90
4856 5774 1.230149 ACCTGGAATGGCACCCCTA 60.230 57.895 0.00 0.00 0.00 3.53
4878 5796 5.568620 ACCATTCAGAACAAGGTAGAAGT 57.431 39.130 2.63 0.00 0.00 3.01
4879 5797 5.308825 ACCATTCAGAACAAGGTAGAAGTG 58.691 41.667 2.63 0.00 0.00 3.16
4880 5798 5.163195 ACCATTCAGAACAAGGTAGAAGTGT 60.163 40.000 2.63 0.00 0.00 3.55
4881 5799 6.042781 ACCATTCAGAACAAGGTAGAAGTGTA 59.957 38.462 2.63 0.00 0.00 2.90
4885 5803 6.746120 TCAGAACAAGGTAGAAGTGTAGAAC 58.254 40.000 0.00 0.00 0.00 3.01
4904 5822 3.977134 ACACATCAAGTCTCATCAGCT 57.023 42.857 0.00 0.00 0.00 4.24
4905 5823 5.186603 AGAACACATCAAGTCTCATCAGCTA 59.813 40.000 0.00 0.00 0.00 3.32
4920 5863 7.337689 TCTCATCAGCTAGCATTTACACATTTT 59.662 33.333 18.83 0.00 0.00 1.82
4925 5868 7.390440 TCAGCTAGCATTTACACATTTTACACT 59.610 33.333 18.83 0.00 0.00 3.55
4957 5902 7.106439 ACAGTTCATGTAAATTTTGTGGTCA 57.894 32.000 0.00 0.00 41.60 4.02
4978 5923 2.988010 TGCAAATACAGAGGATCGCT 57.012 45.000 0.00 0.00 42.67 4.93
4980 5925 3.982475 TGCAAATACAGAGGATCGCTAG 58.018 45.455 0.00 0.00 42.67 3.42
5081 6026 7.623089 GCCGCAACATCATATAAGAAGATCTTC 60.623 40.741 25.20 25.20 37.89 2.87
5087 6032 8.658619 ACATCATATAAGAAGATCTTCCAAGCT 58.341 33.333 28.01 9.79 40.33 3.74
5095 6040 0.983378 ATCTTCCAAGCTAGGGCCGT 60.983 55.000 2.24 2.24 39.73 5.68
5126 6071 6.691491 GCCTCATGATTAGGATTTAGAACCCA 60.691 42.308 3.71 0.00 36.08 4.51
5135 6081 3.832490 GGATTTAGAACCCAAGGCAAGTT 59.168 43.478 0.00 0.00 0.00 2.66
5136 6082 4.283467 GGATTTAGAACCCAAGGCAAGTTT 59.717 41.667 0.00 0.00 0.00 2.66
5137 6083 5.221641 GGATTTAGAACCCAAGGCAAGTTTT 60.222 40.000 0.00 0.00 0.00 2.43
5138 6084 5.685520 TTTAGAACCCAAGGCAAGTTTTT 57.314 34.783 0.00 0.00 0.00 1.94
5238 6184 7.746703 AGGTCTCTTTGGACTAAACTTGTTAT 58.253 34.615 0.00 0.00 36.55 1.89
5288 6250 3.169512 ACCCCCAATTTTTCTCGTGAT 57.830 42.857 0.00 0.00 0.00 3.06
5363 6325 1.340600 CGAGGGTATTGGCCTTTTGGA 60.341 52.381 3.32 0.00 44.07 3.53
5408 6370 6.653740 CCCCTAAACTTAACGACTTCTTTGAT 59.346 38.462 0.00 0.00 0.00 2.57
5478 6440 5.125900 TGTCTTCAAATATGTTGCATGGAGG 59.874 40.000 0.00 0.00 0.00 4.30
5479 6441 5.357878 GTCTTCAAATATGTTGCATGGAGGA 59.642 40.000 0.00 0.00 0.00 3.71
5480 6442 5.591472 TCTTCAAATATGTTGCATGGAGGAG 59.409 40.000 0.00 0.00 0.00 3.69
5481 6443 3.633525 TCAAATATGTTGCATGGAGGAGC 59.366 43.478 0.00 0.00 0.00 4.70
5482 6444 3.589951 AATATGTTGCATGGAGGAGCT 57.410 42.857 0.00 0.00 0.00 4.09
5483 6445 3.589951 ATATGTTGCATGGAGGAGCTT 57.410 42.857 0.00 0.00 0.00 3.74
5484 6446 2.226962 ATGTTGCATGGAGGAGCTTT 57.773 45.000 0.00 0.00 0.00 3.51
5485 6447 1.538047 TGTTGCATGGAGGAGCTTTC 58.462 50.000 0.00 0.00 0.00 2.62
5486 6448 0.813821 GTTGCATGGAGGAGCTTTCC 59.186 55.000 10.46 10.46 35.20 3.13
5493 6455 3.121929 TGGAGGAGCTTTCCAGATAGT 57.878 47.619 14.88 0.00 39.74 2.12
5494 6456 3.454858 TGGAGGAGCTTTCCAGATAGTT 58.545 45.455 14.88 0.00 39.74 2.24
5495 6457 4.620723 TGGAGGAGCTTTCCAGATAGTTA 58.379 43.478 14.88 0.00 39.74 2.24
5496 6458 4.651503 TGGAGGAGCTTTCCAGATAGTTAG 59.348 45.833 14.88 0.00 39.74 2.34
5497 6459 4.502431 GGAGGAGCTTTCCAGATAGTTAGC 60.502 50.000 12.07 0.00 34.74 3.09
5498 6460 3.389656 AGGAGCTTTCCAGATAGTTAGCC 59.610 47.826 0.00 0.00 0.00 3.93
5499 6461 3.389656 GGAGCTTTCCAGATAGTTAGCCT 59.610 47.826 0.00 0.00 0.00 4.58
5505 6467 4.568072 TCCAGATAGTTAGCCTTGCAAA 57.432 40.909 0.00 0.00 0.00 3.68
5523 6485 5.957798 TGCAAATAGAGGAAATCTTTGCAG 58.042 37.500 14.82 0.00 46.15 4.41
5536 6498 2.106338 TCTTTGCAGGACATTGAGGTCA 59.894 45.455 0.00 0.00 39.59 4.02
5570 6532 4.096984 CAGACATCCCAAAGTAAGAATGCC 59.903 45.833 0.00 0.00 0.00 4.40
5577 6539 5.185635 TCCCAAAGTAAGAATGCCAAATCTG 59.814 40.000 0.00 0.00 0.00 2.90
5578 6540 4.866486 CCAAAGTAAGAATGCCAAATCTGC 59.134 41.667 0.00 0.00 0.00 4.26
5580 6542 4.978083 AGTAAGAATGCCAAATCTGCAG 57.022 40.909 7.63 7.63 42.92 4.41
5583 6545 4.386867 AAGAATGCCAAATCTGCAGATG 57.613 40.909 29.34 19.16 42.92 2.90
5595 6557 3.974912 TCTGCAGATGCTCTTATTCGAG 58.025 45.455 13.74 0.00 42.66 4.04
5645 6607 2.014554 CGTCGGTGAACTGTCGGTG 61.015 63.158 1.64 0.00 31.81 4.94
5686 6648 5.964758 TCTTCCATGTCCAATGCATAAAAC 58.035 37.500 0.00 0.00 0.00 2.43
5707 6669 6.436843 AACTAATTGATCCAAACATCCGAC 57.563 37.500 0.00 0.00 0.00 4.79
5709 6671 2.753055 TTGATCCAAACATCCGACGA 57.247 45.000 0.00 0.00 0.00 4.20
5744 6706 3.388024 TCACCTATCACCATAAGCCTCAC 59.612 47.826 0.00 0.00 0.00 3.51
5746 6708 3.780294 ACCTATCACCATAAGCCTCACAA 59.220 43.478 0.00 0.00 0.00 3.33
5749 6711 3.719268 TCACCATAAGCCTCACAATGT 57.281 42.857 0.00 0.00 0.00 2.71
5820 6782 4.574599 TCACACTCTCGATGATGGTATG 57.425 45.455 0.00 0.00 0.00 2.39
5827 6789 7.014711 ACACTCTCGATGATGGTATGATAAACT 59.985 37.037 0.00 0.00 0.00 2.66
5831 6793 6.631016 TCGATGATGGTATGATAAACTAGGC 58.369 40.000 0.00 0.00 0.00 3.93
5856 6818 1.001974 TGAACATCACTACGCCAAGCT 59.998 47.619 0.00 0.00 0.00 3.74
6011 6973 3.950397 TGTGTATGCTTAGGGTTGAAGG 58.050 45.455 0.00 0.00 0.00 3.46
6013 6975 2.307392 TGTATGCTTAGGGTTGAAGGCA 59.693 45.455 0.00 0.00 0.00 4.75
6025 6987 3.552890 GGTTGAAGGCAAGGAACATGAAC 60.553 47.826 0.00 0.00 34.01 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.520787 GGTCCGGCCGATTACAGTG 60.521 63.158 30.73 7.15 0.00 3.66
1 2 2.728435 GGGTCCGGCCGATTACAGT 61.728 63.158 30.73 0.00 38.44 3.55
129 130 2.222445 GCGACAAAGCGAAAGAGGTAAA 59.778 45.455 0.00 0.00 0.00 2.01
186 187 2.288334 CGGCAGAATCCATCAGAGAGAG 60.288 54.545 0.00 0.00 0.00 3.20
190 191 0.467384 ACCGGCAGAATCCATCAGAG 59.533 55.000 0.00 0.00 0.00 3.35
194 195 1.583054 GTGTACCGGCAGAATCCATC 58.417 55.000 0.00 0.00 0.00 3.51
205 206 3.078725 GAACATGCGCGTGTACCGG 62.079 63.158 33.75 8.30 36.94 5.28
207 208 2.746803 GGGAACATGCGCGTGTACC 61.747 63.158 33.75 31.14 0.00 3.34
209 210 1.004320 AAGGGAACATGCGCGTGTA 60.004 52.632 33.75 0.48 0.00 2.90
212 222 1.741770 GAGAAGGGAACATGCGCGT 60.742 57.895 8.43 0.00 0.00 6.01
224 234 1.066908 GCGAGAGGACATGAGAGAAGG 59.933 57.143 0.00 0.00 0.00 3.46
228 238 1.358402 CGGCGAGAGGACATGAGAG 59.642 63.158 0.00 0.00 0.00 3.20
229 239 0.965866 AACGGCGAGAGGACATGAGA 60.966 55.000 16.62 0.00 0.00 3.27
230 240 0.108615 AAACGGCGAGAGGACATGAG 60.109 55.000 16.62 0.00 0.00 2.90
231 241 1.179152 TAAACGGCGAGAGGACATGA 58.821 50.000 16.62 0.00 0.00 3.07
232 242 1.860950 CATAAACGGCGAGAGGACATG 59.139 52.381 16.62 3.06 0.00 3.21
233 243 1.754803 TCATAAACGGCGAGAGGACAT 59.245 47.619 16.62 0.00 0.00 3.06
234 244 1.134367 CTCATAAACGGCGAGAGGACA 59.866 52.381 16.62 0.00 0.00 4.02
235 245 1.841450 CTCATAAACGGCGAGAGGAC 58.159 55.000 16.62 0.00 0.00 3.85
236 246 0.102481 GCTCATAAACGGCGAGAGGA 59.898 55.000 16.62 4.17 0.00 3.71
237 247 0.876342 GGCTCATAAACGGCGAGAGG 60.876 60.000 16.62 0.00 0.00 3.69
261 271 2.741486 TTAAGTCAGGCACGCCACCC 62.741 60.000 11.35 0.00 38.92 4.61
264 274 0.037326 CTCTTAAGTCAGGCACGCCA 60.037 55.000 11.35 0.00 38.92 5.69
265 275 1.362406 GCTCTTAAGTCAGGCACGCC 61.362 60.000 0.00 0.00 0.00 5.68
266 276 0.670546 TGCTCTTAAGTCAGGCACGC 60.671 55.000 1.63 0.00 0.00 5.34
267 277 1.929836 GATGCTCTTAAGTCAGGCACG 59.070 52.381 13.71 0.00 35.72 5.34
269 279 2.169352 GGAGATGCTCTTAAGTCAGGCA 59.831 50.000 1.63 9.45 37.32 4.75
270 280 2.169352 TGGAGATGCTCTTAAGTCAGGC 59.831 50.000 1.63 4.31 0.00 4.85
271 281 3.740764 GCTGGAGATGCTCTTAAGTCAGG 60.741 52.174 1.63 0.00 0.00 3.86
272 282 3.456280 GCTGGAGATGCTCTTAAGTCAG 58.544 50.000 1.63 0.00 0.00 3.51
273 283 2.169352 GGCTGGAGATGCTCTTAAGTCA 59.831 50.000 1.63 2.70 0.00 3.41
274 284 2.801342 CGGCTGGAGATGCTCTTAAGTC 60.801 54.545 1.63 0.00 0.00 3.01
275 285 1.137872 CGGCTGGAGATGCTCTTAAGT 59.862 52.381 1.63 0.00 0.00 2.24
276 286 1.137872 ACGGCTGGAGATGCTCTTAAG 59.862 52.381 0.00 0.00 0.00 1.85
277 287 1.195115 ACGGCTGGAGATGCTCTTAA 58.805 50.000 0.00 0.00 0.00 1.85
278 288 1.134699 CAACGGCTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
279 289 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
280 290 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
281 291 0.809241 CTCAACGGCTGGAGATGCTC 60.809 60.000 0.00 0.00 32.87 4.26
282 292 1.220206 CTCAACGGCTGGAGATGCT 59.780 57.895 0.00 0.00 32.87 3.79
283 293 2.467826 GCTCAACGGCTGGAGATGC 61.468 63.158 0.00 0.00 32.87 3.91
284 294 0.392193 AAGCTCAACGGCTGGAGATG 60.392 55.000 0.00 0.00 42.24 2.90
285 295 0.107945 GAAGCTCAACGGCTGGAGAT 60.108 55.000 0.00 0.00 42.24 2.75
286 296 1.188219 AGAAGCTCAACGGCTGGAGA 61.188 55.000 0.00 0.00 42.24 3.71
287 297 0.739112 GAGAAGCTCAACGGCTGGAG 60.739 60.000 0.00 0.00 42.24 3.86
288 298 1.293498 GAGAAGCTCAACGGCTGGA 59.707 57.895 0.00 0.00 42.24 3.86
289 299 0.603707 TTGAGAAGCTCAACGGCTGG 60.604 55.000 5.81 0.00 44.27 4.85
290 300 2.918571 TTGAGAAGCTCAACGGCTG 58.081 52.632 5.81 0.00 44.27 4.85
296 306 4.942761 AAATGCCTTTTGAGAAGCTCAA 57.057 36.364 5.81 5.81 46.93 3.02
297 307 4.942761 AAAATGCCTTTTGAGAAGCTCA 57.057 36.364 0.00 0.00 38.87 4.26
317 327 1.068921 GCCTTCCAAGCGGCAAAAA 59.931 52.632 1.45 0.00 45.59 1.94
318 328 2.733945 GCCTTCCAAGCGGCAAAA 59.266 55.556 1.45 0.00 45.59 2.44
325 335 3.435186 GTCGGCAGCCTTCCAAGC 61.435 66.667 10.54 0.00 0.00 4.01
326 336 2.859273 ATCGTCGGCAGCCTTCCAAG 62.859 60.000 10.54 0.00 0.00 3.61
327 337 1.609635 TATCGTCGGCAGCCTTCCAA 61.610 55.000 10.54 0.00 0.00 3.53
328 338 1.609635 TTATCGTCGGCAGCCTTCCA 61.610 55.000 10.54 0.00 0.00 3.53
329 339 0.249911 ATTATCGTCGGCAGCCTTCC 60.250 55.000 10.54 0.00 0.00 3.46
330 340 1.583054 AATTATCGTCGGCAGCCTTC 58.417 50.000 10.54 1.00 0.00 3.46
331 341 2.038387 AAATTATCGTCGGCAGCCTT 57.962 45.000 10.54 0.00 0.00 4.35
332 342 2.038387 AAAATTATCGTCGGCAGCCT 57.962 45.000 10.54 0.00 0.00 4.58
333 343 2.349532 GCTAAAATTATCGTCGGCAGCC 60.350 50.000 0.00 0.00 0.00 4.85
334 344 2.349532 GGCTAAAATTATCGTCGGCAGC 60.350 50.000 0.00 0.00 0.00 5.25
335 345 3.059597 CAGGCTAAAATTATCGTCGGCAG 60.060 47.826 0.00 0.00 0.00 4.85
336 346 2.869801 CAGGCTAAAATTATCGTCGGCA 59.130 45.455 0.00 0.00 0.00 5.69
337 347 2.223377 CCAGGCTAAAATTATCGTCGGC 59.777 50.000 0.00 0.00 0.00 5.54
338 348 2.806244 CCCAGGCTAAAATTATCGTCGG 59.194 50.000 0.00 0.00 0.00 4.79
339 349 3.247648 CACCCAGGCTAAAATTATCGTCG 59.752 47.826 0.00 0.00 0.00 5.12
340 350 4.196971 ACACCCAGGCTAAAATTATCGTC 58.803 43.478 0.00 0.00 0.00 4.20
341 351 4.196971 GACACCCAGGCTAAAATTATCGT 58.803 43.478 0.00 0.00 0.00 3.73
342 352 4.196193 TGACACCCAGGCTAAAATTATCG 58.804 43.478 0.00 0.00 0.00 2.92
343 353 6.524101 TTTGACACCCAGGCTAAAATTATC 57.476 37.500 0.00 0.00 0.00 1.75
344 354 6.926630 TTTTGACACCCAGGCTAAAATTAT 57.073 33.333 0.00 0.00 26.71 1.28
345 355 6.732896 TTTTTGACACCCAGGCTAAAATTA 57.267 33.333 0.00 0.00 35.49 1.40
346 356 5.622346 TTTTTGACACCCAGGCTAAAATT 57.378 34.783 0.00 0.00 35.49 1.82
366 376 3.251487 CGGGGACAACGAGTGTAATTTTT 59.749 43.478 0.00 0.00 41.96 1.94
367 377 2.809696 CGGGGACAACGAGTGTAATTTT 59.190 45.455 0.00 0.00 41.96 1.82
368 378 2.419667 CGGGGACAACGAGTGTAATTT 58.580 47.619 0.00 0.00 41.96 1.82
369 379 1.942586 GCGGGGACAACGAGTGTAATT 60.943 52.381 0.00 0.00 41.96 1.40
370 380 0.390735 GCGGGGACAACGAGTGTAAT 60.391 55.000 0.00 0.00 41.96 1.89
371 381 1.005867 GCGGGGACAACGAGTGTAA 60.006 57.895 0.00 0.00 41.96 2.41
372 382 2.149803 CTGCGGGGACAACGAGTGTA 62.150 60.000 0.00 0.00 41.96 2.90
373 383 3.515316 CTGCGGGGACAACGAGTGT 62.515 63.158 0.00 0.00 45.74 3.55
374 384 2.738521 CTGCGGGGACAACGAGTG 60.739 66.667 0.00 0.00 0.00 3.51
375 385 4.003788 CCTGCGGGGACAACGAGT 62.004 66.667 2.57 0.00 37.23 4.18
502 726 0.553862 ACCCCCTCTCTCTCCTCTCA 60.554 60.000 0.00 0.00 0.00 3.27
517 741 0.471022 TTTTTCCTTCTGCCCACCCC 60.471 55.000 0.00 0.00 0.00 4.95
578 820 2.555732 AACCAATCTGATTGCCCCAT 57.444 45.000 22.00 5.59 38.92 4.00
600 842 2.429069 GAGCACCGGCGCTTTTTG 60.429 61.111 19.78 0.00 44.01 2.44
601 843 3.670377 GGAGCACCGGCGCTTTTT 61.670 61.111 19.78 0.00 44.01 1.94
658 900 5.276868 CCGGATTAGACGAAAAATACAGCTG 60.277 44.000 13.48 13.48 0.00 4.24
659 901 4.809426 CCGGATTAGACGAAAAATACAGCT 59.191 41.667 0.00 0.00 0.00 4.24
680 922 1.002366 CAGGATCTCACTTTTCGCCG 58.998 55.000 0.00 0.00 0.00 6.46
681 923 1.373570 CCAGGATCTCACTTTTCGCC 58.626 55.000 0.00 0.00 0.00 5.54
684 926 2.356227 GGGTCCCAGGATCTCACTTTTC 60.356 54.545 1.78 0.00 0.00 2.29
694 936 1.381872 CTCACTCGGGTCCCAGGAT 60.382 63.158 9.12 0.00 0.00 3.24
752 996 0.398664 ACTAGCGCCCCTAAGATGGT 60.399 55.000 2.29 0.00 0.00 3.55
753 997 0.034059 CACTAGCGCCCCTAAGATGG 59.966 60.000 2.29 0.00 0.00 3.51
760 1004 2.136878 CATCTCCACTAGCGCCCCT 61.137 63.158 2.29 0.00 0.00 4.79
785 1029 5.181748 CAGTAGGAGGGAATCAAACAAGAG 58.818 45.833 0.00 0.00 0.00 2.85
872 1119 6.738114 ACAGACAAATCAACTGTGTTAATGG 58.262 36.000 0.00 0.00 42.18 3.16
881 1128 5.209977 CACATGACACAGACAAATCAACTG 58.790 41.667 0.00 0.00 37.62 3.16
882 1129 4.276678 CCACATGACACAGACAAATCAACT 59.723 41.667 0.00 0.00 0.00 3.16
895 1142 2.138320 CTCCGCATATCCACATGACAC 58.862 52.381 0.00 0.00 0.00 3.67
898 1145 0.758123 TGCTCCGCATATCCACATGA 59.242 50.000 0.00 0.00 31.71 3.07
899 1146 1.596603 TTGCTCCGCATATCCACATG 58.403 50.000 0.00 0.00 38.76 3.21
910 1157 1.717937 CAGTAGTGCATTGCTCCGC 59.282 57.895 10.49 2.50 0.00 5.54
922 1178 0.179056 AAATATGGGCGCGCAGTAGT 60.179 50.000 34.42 17.74 0.00 2.73
996 1253 7.837863 ACGCACCTATATAGCTACACATAAAT 58.162 34.615 4.04 0.00 0.00 1.40
1060 1318 2.289444 GCCGATCGATAGGAAAATCCCA 60.289 50.000 26.64 0.00 37.19 4.37
1096 1354 6.062095 TCGTATCAATGGACTGATGAGTAGA 58.938 40.000 0.00 0.00 36.69 2.59
1103 1361 4.344968 TCACCATCGTATCAATGGACTGAT 59.655 41.667 9.04 0.00 45.51 2.90
1104 1362 3.704061 TCACCATCGTATCAATGGACTGA 59.296 43.478 9.04 0.99 45.51 3.41
1105 1363 4.058721 TCACCATCGTATCAATGGACTG 57.941 45.455 9.04 0.00 45.51 3.51
1106 1364 4.405680 TCTTCACCATCGTATCAATGGACT 59.594 41.667 9.04 0.00 45.51 3.85
1107 1365 4.508124 GTCTTCACCATCGTATCAATGGAC 59.492 45.833 9.04 0.00 45.51 4.02
1242 1509 1.872679 GGAACGTCGATGCGTCCTC 60.873 63.158 16.99 6.29 45.00 3.71
1377 1645 4.090761 AGAGGTGCAGATGAACAAGAAA 57.909 40.909 0.00 0.00 0.00 2.52
1405 1673 1.228459 AGAAGTCCCCCGCCAAAAC 60.228 57.895 0.00 0.00 0.00 2.43
1433 1701 0.687920 TTTCCCATAGCACACACCGA 59.312 50.000 0.00 0.00 0.00 4.69
1493 1765 2.991190 CCGTAAACTTTTGCGCTCTCTA 59.009 45.455 9.73 0.00 43.39 2.43
1496 1768 1.873698 TCCGTAAACTTTTGCGCTCT 58.126 45.000 9.73 0.00 43.39 4.09
1499 1771 1.976045 CACATCCGTAAACTTTTGCGC 59.024 47.619 0.00 0.00 43.39 6.09
1500 1772 3.262135 ACACATCCGTAAACTTTTGCG 57.738 42.857 5.34 5.34 44.15 4.85
1525 1797 2.558359 CAAGACCAAATTGTCCACTCCC 59.442 50.000 0.00 0.00 35.83 4.30
1527 1799 3.004734 CCACAAGACCAAATTGTCCACTC 59.995 47.826 0.00 0.00 38.80 3.51
1569 1843 1.584495 GACCGGCGCCAGAATTTTT 59.416 52.632 28.98 0.00 0.00 1.94
1570 1844 2.686816 CGACCGGCGCCAGAATTTT 61.687 57.895 28.98 0.00 0.00 1.82
1595 1869 3.354948 TGCTCACAGGCATATGAAACT 57.645 42.857 6.97 0.00 37.29 2.66
1596 1870 4.644103 ATTGCTCACAGGCATATGAAAC 57.356 40.909 6.97 0.00 42.09 2.78
1597 1871 4.142116 CCAATTGCTCACAGGCATATGAAA 60.142 41.667 6.97 0.00 42.09 2.69
1598 1872 3.382227 CCAATTGCTCACAGGCATATGAA 59.618 43.478 6.97 0.00 42.09 2.57
1606 1880 2.426024 CTGGATTCCAATTGCTCACAGG 59.574 50.000 6.88 0.00 30.80 4.00
1609 1883 2.165030 CCACTGGATTCCAATTGCTCAC 59.835 50.000 6.88 0.00 30.80 3.51
1637 1911 0.857311 GCATGCGTGTATTGTCGTGC 60.857 55.000 0.00 0.00 0.00 5.34
1692 1967 2.334653 CTGGAGCGATCTCGAGGC 59.665 66.667 13.56 8.39 40.27 4.70
1693 1968 1.358402 CACTGGAGCGATCTCGAGG 59.642 63.158 13.56 0.00 45.82 4.63
1694 1969 1.299014 GCACTGGAGCGATCTCGAG 60.299 63.158 5.93 5.93 46.61 4.04
1695 1970 2.801421 GCACTGGAGCGATCTCGA 59.199 61.111 0.00 0.00 43.02 4.04
1741 2016 4.388499 GCAGAGAAACGGCCCCGA 62.388 66.667 14.44 0.00 42.83 5.14
1749 2024 1.480545 GAGAGAGGGAGGCAGAGAAAC 59.519 57.143 0.00 0.00 0.00 2.78
1750 2025 1.360852 AGAGAGAGGGAGGCAGAGAAA 59.639 52.381 0.00 0.00 0.00 2.52
1763 2038 3.591835 GCGGCGAGGGAGAGAGAG 61.592 72.222 12.98 0.00 0.00 3.20
1792 2067 4.814294 ATTCACCGGACGGCGCTC 62.814 66.667 9.46 3.63 39.32 5.03
1840 2119 2.033194 GCCCGCTGGTATATTCGGC 61.033 63.158 0.00 0.00 40.49 5.54
1847 2126 4.586235 GCATGGGCCCGCTGGTAT 62.586 66.667 19.37 0.00 0.00 2.73
1864 2143 1.079543 CTCCAGACGGGCTTGACAG 60.080 63.158 0.00 0.00 36.21 3.51
1868 2147 1.669115 CACACTCCAGACGGGCTTG 60.669 63.158 0.00 0.00 36.21 4.01
1869 2148 2.743718 CACACTCCAGACGGGCTT 59.256 61.111 0.00 0.00 36.21 4.35
1877 2156 3.649981 AGATGGGAATATCCACACTCCAG 59.350 47.826 0.00 0.00 39.97 3.86
1880 2159 4.590647 TCAGAGATGGGAATATCCACACTC 59.409 45.833 0.00 9.53 39.97 3.51
1881 2160 4.560739 TCAGAGATGGGAATATCCACACT 58.439 43.478 0.00 0.00 39.97 3.55
1882 2161 4.963318 TCAGAGATGGGAATATCCACAC 57.037 45.455 0.00 0.00 39.97 3.82
1883 2162 4.349048 CCTTCAGAGATGGGAATATCCACA 59.651 45.833 0.00 0.00 39.97 4.17
1884 2163 4.349342 ACCTTCAGAGATGGGAATATCCAC 59.651 45.833 0.00 0.00 39.97 4.02
1885 2164 4.570926 ACCTTCAGAGATGGGAATATCCA 58.429 43.478 0.00 0.00 38.64 3.41
1886 2165 5.574970 AACCTTCAGAGATGGGAATATCC 57.425 43.478 4.28 0.00 35.23 2.59
1887 2166 6.830838 ACAAAACCTTCAGAGATGGGAATATC 59.169 38.462 4.28 0.00 32.06 1.63
1890 2169 4.768968 CACAAAACCTTCAGAGATGGGAAT 59.231 41.667 4.28 0.00 32.06 3.01
1896 2678 4.536765 ACCAACACAAAACCTTCAGAGAT 58.463 39.130 0.00 0.00 0.00 2.75
1898 2680 3.242739 CGACCAACACAAAACCTTCAGAG 60.243 47.826 0.00 0.00 0.00 3.35
1909 2691 1.527736 GCGAACATACGACCAACACAA 59.472 47.619 0.00 0.00 35.09 3.33
1922 2704 5.140747 AGTAGAGAAAAGTGAGCGAACAT 57.859 39.130 0.00 0.00 0.00 2.71
1928 2710 3.963428 TGGGAGTAGAGAAAAGTGAGC 57.037 47.619 0.00 0.00 0.00 4.26
1947 2729 2.455557 TCACAAAAGGCCCCACATATG 58.544 47.619 0.00 0.00 0.00 1.78
1949 2731 2.685106 TTCACAAAAGGCCCCACATA 57.315 45.000 0.00 0.00 0.00 2.29
1993 2788 1.011968 TCGTCGGGTGATTTGAAGCG 61.012 55.000 0.00 0.00 0.00 4.68
2007 2802 0.389391 AGGCTACAATGGGATCGTCG 59.611 55.000 0.00 0.00 0.00 5.12
2013 2808 1.004277 GGACACAAGGCTACAATGGGA 59.996 52.381 0.00 0.00 0.00 4.37
2014 2809 1.463674 GGACACAAGGCTACAATGGG 58.536 55.000 0.00 0.00 0.00 4.00
2015 2810 1.086696 CGGACACAAGGCTACAATGG 58.913 55.000 0.00 0.00 0.00 3.16
2063 2867 4.015406 CACTGCGTGTAGGGCCCA 62.015 66.667 27.56 7.27 0.00 5.36
2082 2886 3.288092 GTGGGAAGGGGAACATGATAAC 58.712 50.000 0.00 0.00 0.00 1.89
2083 2887 2.243736 GGTGGGAAGGGGAACATGATAA 59.756 50.000 0.00 0.00 0.00 1.75
2091 2895 0.104144 TTCTCTGGTGGGAAGGGGAA 60.104 55.000 0.00 0.00 0.00 3.97
2093 2897 0.842467 ACTTCTCTGGTGGGAAGGGG 60.842 60.000 9.99 0.00 42.05 4.79
2094 2898 0.615850 GACTTCTCTGGTGGGAAGGG 59.384 60.000 9.99 0.00 42.05 3.95
2095 2899 1.002544 GTGACTTCTCTGGTGGGAAGG 59.997 57.143 9.99 0.00 42.05 3.46
2096 2900 1.337260 CGTGACTTCTCTGGTGGGAAG 60.337 57.143 4.32 4.32 43.02 3.46
2098 2902 0.178973 TCGTGACTTCTCTGGTGGGA 60.179 55.000 0.00 0.00 0.00 4.37
2103 2912 3.919216 AGACAATTCGTGACTTCTCTGG 58.081 45.455 0.00 0.00 0.00 3.86
2111 2920 3.254892 GAGAGGGAAGACAATTCGTGAC 58.745 50.000 0.00 0.00 0.00 3.67
2118 2927 2.697751 CGATGAGGAGAGGGAAGACAAT 59.302 50.000 0.00 0.00 0.00 2.71
2128 2937 1.334870 CGATGCTGACGATGAGGAGAG 60.335 57.143 0.00 0.00 0.00 3.20
2143 2952 3.492313 CTGGTTTAGTTTGCTTCGATGC 58.508 45.455 15.88 15.88 0.00 3.91
2157 2966 1.443194 GACTCGACGCGCTGGTTTA 60.443 57.895 5.73 0.00 0.00 2.01
2159 2968 4.719369 GGACTCGACGCGCTGGTT 62.719 66.667 5.73 0.00 0.00 3.67
2173 2982 3.032459 AGGACGAGGGAAAATAGAGGAC 58.968 50.000 0.00 0.00 0.00 3.85
2180 2989 1.697432 TGTGTGAGGACGAGGGAAAAT 59.303 47.619 0.00 0.00 0.00 1.82
2181 2990 1.124780 TGTGTGAGGACGAGGGAAAA 58.875 50.000 0.00 0.00 0.00 2.29
2190 2999 2.048127 GGAGCGGTGTGTGAGGAC 60.048 66.667 0.00 0.00 0.00 3.85
2252 3061 2.406401 CTAGTTGCAGCGCCATGC 59.594 61.111 14.21 14.21 46.68 4.06
2268 3077 0.320771 CTTGAAGTAGTGTGCGGGCT 60.321 55.000 0.00 0.00 0.00 5.19
2280 3089 1.905894 GCCTCTCTCTTCCCTTGAAGT 59.094 52.381 2.56 0.00 46.66 3.01
2324 3133 7.521529 CCTCTACAACACATGTGATGTTTTAG 58.478 38.462 36.61 28.85 42.73 1.85
2326 3135 5.278463 GCCTCTACAACACATGTGATGTTTT 60.278 40.000 36.61 20.64 42.73 2.43
2337 3146 2.345991 GCCGGCCTCTACAACACA 59.654 61.111 18.11 0.00 0.00 3.72
2344 3153 3.755628 GACACGTGCCGGCCTCTA 61.756 66.667 26.77 0.59 0.00 2.43
2386 3195 5.106197 CCCAATGATTTCAGAAACATCGACA 60.106 40.000 0.00 0.00 0.00 4.35
2387 3196 5.335127 CCCAATGATTTCAGAAACATCGAC 58.665 41.667 0.00 0.00 0.00 4.20
2390 3199 5.665916 ACCCCAATGATTTCAGAAACATC 57.334 39.130 0.00 0.00 0.00 3.06
2392 3201 4.502950 GCAACCCCAATGATTTCAGAAACA 60.503 41.667 0.00 0.00 0.00 2.83
2410 3219 1.898574 CACCCACACCTCTGCAACC 60.899 63.158 0.00 0.00 0.00 3.77
2416 3225 2.111043 CGCAACACCCACACCTCT 59.889 61.111 0.00 0.00 0.00 3.69
2434 3243 4.179579 GTTGCAATCGGGCGAGCC 62.180 66.667 0.59 5.37 36.28 4.70
2442 3251 2.030007 ACCAATGGTGAAGTTGCAATCG 60.030 45.455 3.09 0.00 32.98 3.34
2501 3318 2.276868 CAATTCGGCAAGCTCGCG 60.277 61.111 0.00 0.00 0.00 5.87
2511 3328 2.823196 TCAATAGCGTTGCAATTCGG 57.177 45.000 0.59 0.00 0.00 4.30
2513 3330 8.806634 TCAAAAATATCAATAGCGTTGCAATTC 58.193 29.630 0.59 0.00 0.00 2.17
2520 3337 9.086336 CCATGTTTCAAAAATATCAATAGCGTT 57.914 29.630 0.00 0.00 0.00 4.84
2532 3349 8.503458 TCACAAATCAACCATGTTTCAAAAAT 57.497 26.923 0.00 0.00 0.00 1.82
2536 3353 6.580788 ACATCACAAATCAACCATGTTTCAA 58.419 32.000 0.00 0.00 0.00 2.69
2539 3356 6.347696 ACAACATCACAAATCAACCATGTTT 58.652 32.000 0.00 0.00 33.26 2.83
2552 3369 5.047021 TCCCTTCACAAAAACAACATCACAA 60.047 36.000 0.00 0.00 0.00 3.33
2554 3371 5.004922 TCCCTTCACAAAAACAACATCAC 57.995 39.130 0.00 0.00 0.00 3.06
2555 3372 4.099266 CCTCCCTTCACAAAAACAACATCA 59.901 41.667 0.00 0.00 0.00 3.07
2556 3373 4.340950 TCCTCCCTTCACAAAAACAACATC 59.659 41.667 0.00 0.00 0.00 3.06
2560 3378 3.069443 GCATCCTCCCTTCACAAAAACAA 59.931 43.478 0.00 0.00 0.00 2.83
2567 3385 1.191489 TCGTGCATCCTCCCTTCACA 61.191 55.000 0.00 0.00 0.00 3.58
2569 3387 1.617018 CCTCGTGCATCCTCCCTTCA 61.617 60.000 0.00 0.00 0.00 3.02
2570 3388 1.144936 CCTCGTGCATCCTCCCTTC 59.855 63.158 0.00 0.00 0.00 3.46
2584 3402 1.529826 GCTAAGTTGCAATTCGCCTCG 60.530 52.381 0.59 0.00 41.33 4.63
2597 3415 8.680903 CCATATTTCAGAAACATCAGCTAAGTT 58.319 33.333 0.00 0.00 0.00 2.66
2647 3465 0.537188 TCGCTCATCCTTCCTTCCAC 59.463 55.000 0.00 0.00 0.00 4.02
2648 3466 0.826715 CTCGCTCATCCTTCCTTCCA 59.173 55.000 0.00 0.00 0.00 3.53
2649 3467 1.115467 TCTCGCTCATCCTTCCTTCC 58.885 55.000 0.00 0.00 0.00 3.46
2677 3495 2.618312 GATCAAATGGCCCGCAGTGC 62.618 60.000 4.58 4.58 0.00 4.40
2753 3572 0.732571 ATTTGGGTCATTGCTACGCG 59.267 50.000 3.53 3.53 32.81 6.01
2760 3579 6.035843 CCTCGACATTTTATTTGGGTCATTG 58.964 40.000 0.00 0.00 0.00 2.82
2763 3582 4.912586 TCCTCGACATTTTATTTGGGTCA 58.087 39.130 0.00 0.00 0.00 4.02
2780 3599 0.396811 ACCAACCTTCCACTTCCTCG 59.603 55.000 0.00 0.00 0.00 4.63
2789 3608 1.408822 CCATGCCTAGACCAACCTTCC 60.409 57.143 0.00 0.00 0.00 3.46
2807 3634 2.238521 GTGGAATGGAAGCAAGAACCA 58.761 47.619 0.00 0.00 38.09 3.67
2814 3641 2.745884 CGCGGTGGAATGGAAGCA 60.746 61.111 0.00 0.00 0.00 3.91
2833 3660 3.075134 AGATTGGGAGGGATTTATCAGCC 59.925 47.826 0.00 0.00 0.00 4.85
2836 3663 5.827797 CGAAAAGATTGGGAGGGATTTATCA 59.172 40.000 0.00 0.00 0.00 2.15
2837 3664 5.828328 ACGAAAAGATTGGGAGGGATTTATC 59.172 40.000 0.00 0.00 0.00 1.75
2839 3666 5.187621 ACGAAAAGATTGGGAGGGATTTA 57.812 39.130 0.00 0.00 0.00 1.40
2843 3670 3.418047 GAAACGAAAAGATTGGGAGGGA 58.582 45.455 0.00 0.00 0.00 4.20
2864 3692 2.888212 TCCATTTCCAGTGAAAAGGGG 58.112 47.619 5.66 0.00 45.26 4.79
2875 3703 4.104102 ACTGACCACTACTTTCCATTTCCA 59.896 41.667 0.00 0.00 0.00 3.53
2876 3704 4.652822 ACTGACCACTACTTTCCATTTCC 58.347 43.478 0.00 0.00 0.00 3.13
2877 3705 5.998363 AGAACTGACCACTACTTTCCATTTC 59.002 40.000 0.00 0.00 0.00 2.17
2889 3717 5.475909 TGAGTAACGAATAGAACTGACCACT 59.524 40.000 0.00 0.00 0.00 4.00
2901 3729 3.581024 ACGGCAAGTGAGTAACGAATA 57.419 42.857 0.00 0.00 0.00 1.75
2938 3766 2.167487 GCTTTTGTCAAAACCACAGGGA 59.833 45.455 6.65 0.00 38.05 4.20
2994 3823 6.542005 TCTGACAGAGTAAATTGCTCAAAACA 59.458 34.615 13.29 6.89 35.55 2.83
3076 3905 3.120792 TGTGCTTACAGACGTGAGAAAC 58.879 45.455 0.00 0.00 30.35 2.78
3078 3907 2.361119 ACTGTGCTTACAGACGTGAGAA 59.639 45.455 13.80 0.00 39.99 2.87
3084 3913 6.408858 AAATCAATACTGTGCTTACAGACG 57.591 37.500 13.80 0.57 39.99 4.18
3217 4046 2.499289 AGATTGACGATCCAGCTCTTGT 59.501 45.455 0.00 0.00 35.21 3.16
3286 4115 2.244946 CAGCATGCATCGATCAGGG 58.755 57.895 21.98 0.00 0.00 4.45
3397 4226 1.137872 GCCGGTGAAGATGATCTGTCT 59.862 52.381 1.90 0.00 0.00 3.41
3399 4228 0.904649 TGCCGGTGAAGATGATCTGT 59.095 50.000 1.90 0.00 0.00 3.41
3407 4236 0.462581 GCTCATGATGCCGGTGAAGA 60.463 55.000 1.90 0.00 0.00 2.87
3486 4323 2.079158 CGCCCGAGATTAATGATGCAT 58.921 47.619 0.00 0.00 0.00 3.96
3487 4324 1.069978 TCGCCCGAGATTAATGATGCA 59.930 47.619 0.00 0.00 0.00 3.96
3492 4329 1.847818 TCGTTCGCCCGAGATTAATG 58.152 50.000 0.00 0.00 32.18 1.90
3501 4338 0.303493 CCATACATTTCGTTCGCCCG 59.697 55.000 0.00 0.00 0.00 6.13
3502 4339 1.597663 CTCCATACATTTCGTTCGCCC 59.402 52.381 0.00 0.00 0.00 6.13
3551 4388 4.264253 TCCAGTTGTAGAAATCTGCATGG 58.736 43.478 12.35 12.35 38.94 3.66
3637 4476 1.210870 TGCGTGTAAAGAACCGACAC 58.789 50.000 0.00 0.00 40.07 3.67
3639 4478 1.593933 TGTTGCGTGTAAAGAACCGAC 59.406 47.619 0.00 0.00 0.00 4.79
3641 4480 2.741122 TTGTTGCGTGTAAAGAACCG 57.259 45.000 0.00 0.00 0.00 4.44
3642 4481 4.801516 ACAAATTGTTGCGTGTAAAGAACC 59.198 37.500 0.00 0.00 38.39 3.62
3647 4486 3.794028 GCTGACAAATTGTTGCGTGTAAA 59.206 39.130 0.00 0.00 38.39 2.01
3651 4490 2.046313 GAGCTGACAAATTGTTGCGTG 58.954 47.619 15.34 1.68 38.39 5.34
3662 4501 2.004733 CGATGCATGAAGAGCTGACAA 58.995 47.619 2.46 0.00 0.00 3.18
3684 4523 1.224075 GATGATGATGACAGCACGGG 58.776 55.000 0.00 0.00 45.12 5.28
3690 4529 6.698380 TGTAGGATGATGATGATGATGACAG 58.302 40.000 0.00 0.00 0.00 3.51
3693 4532 9.582648 AAAAATGTAGGATGATGATGATGATGA 57.417 29.630 0.00 0.00 0.00 2.92
3699 4538 6.765512 TGCGTAAAAATGTAGGATGATGATGA 59.234 34.615 0.00 0.00 0.00 2.92
3700 4539 6.958255 TGCGTAAAAATGTAGGATGATGATG 58.042 36.000 0.00 0.00 0.00 3.07
3701 4540 7.445096 TCATGCGTAAAAATGTAGGATGATGAT 59.555 33.333 0.00 0.00 0.00 2.45
3702 4541 6.765512 TCATGCGTAAAAATGTAGGATGATGA 59.234 34.615 0.00 0.00 0.00 2.92
3703 4542 6.958255 TCATGCGTAAAAATGTAGGATGATG 58.042 36.000 0.00 0.00 0.00 3.07
3713 4552 8.127327 AGAAAGATCAGATCATGCGTAAAAATG 58.873 33.333 13.14 0.00 0.00 2.32
3714 4553 8.218338 AGAAAGATCAGATCATGCGTAAAAAT 57.782 30.769 13.14 0.00 0.00 1.82
3719 4558 6.040278 AGAGAAGAAAGATCAGATCATGCGTA 59.960 38.462 13.14 0.00 0.00 4.42
3726 4565 9.598517 AAACATACAGAGAAGAAAGATCAGATC 57.401 33.333 1.64 1.64 0.00 2.75
3729 4568 7.118825 TGCAAACATACAGAGAAGAAAGATCAG 59.881 37.037 0.00 0.00 0.00 2.90
3731 4570 7.369803 TGCAAACATACAGAGAAGAAAGATC 57.630 36.000 0.00 0.00 0.00 2.75
3732 4571 6.373774 CCTGCAAACATACAGAGAAGAAAGAT 59.626 38.462 0.00 0.00 35.90 2.40
3733 4572 5.702670 CCTGCAAACATACAGAGAAGAAAGA 59.297 40.000 0.00 0.00 35.90 2.52
3736 4575 4.202461 ACCCTGCAAACATACAGAGAAGAA 60.202 41.667 0.00 0.00 35.90 2.52
3738 4577 3.679389 ACCCTGCAAACATACAGAGAAG 58.321 45.455 0.00 0.00 35.90 2.85
3740 4579 3.055385 GGTACCCTGCAAACATACAGAGA 60.055 47.826 0.00 0.00 35.90 3.10
3741 4580 3.270877 GGTACCCTGCAAACATACAGAG 58.729 50.000 0.00 0.00 35.90 3.35
3742 4581 2.354303 CGGTACCCTGCAAACATACAGA 60.354 50.000 6.25 0.00 35.90 3.41
3743 4582 2.006888 CGGTACCCTGCAAACATACAG 58.993 52.381 6.25 0.00 0.00 2.74
3744 4583 1.339247 CCGGTACCCTGCAAACATACA 60.339 52.381 6.25 0.00 0.00 2.29
3745 4584 1.375551 CCGGTACCCTGCAAACATAC 58.624 55.000 6.25 0.00 0.00 2.39
3746 4585 0.253610 CCCGGTACCCTGCAAACATA 59.746 55.000 6.25 0.00 0.00 2.29
3747 4586 1.001393 CCCGGTACCCTGCAAACAT 60.001 57.895 6.25 0.00 0.00 2.71
3748 4587 2.432563 CCCGGTACCCTGCAAACA 59.567 61.111 6.25 0.00 0.00 2.83
3749 4588 3.060000 GCCCGGTACCCTGCAAAC 61.060 66.667 13.91 0.00 0.00 2.93
3750 4589 3.253838 AGCCCGGTACCCTGCAAA 61.254 61.111 19.35 0.00 0.00 3.68
3789 4628 2.507944 CGGATGGCTTCCTCCCAG 59.492 66.667 16.47 0.00 42.99 4.45
3806 4645 2.801631 CCGATGGAGAGGAGGTGCC 61.802 68.421 0.00 0.00 0.00 5.01
3926 4765 2.203153 GGCACTTGACGGTGGTGT 60.203 61.111 0.00 0.00 37.65 4.16
3974 4813 4.274459 TCGAGGAGGTAAATAAGTAGACGC 59.726 45.833 0.00 0.00 0.00 5.19
3992 4831 6.292221 CGACGGTGATGTATATATACTCGAGG 60.292 46.154 20.80 10.22 34.41 4.63
3993 4832 6.638288 CGACGGTGATGTATATATACTCGAG 58.362 44.000 20.80 11.84 34.41 4.04
3994 4833 5.006068 GCGACGGTGATGTATATATACTCGA 59.994 44.000 22.45 7.82 34.41 4.04
3996 4835 6.258287 AGAGCGACGGTGATGTATATATACTC 59.742 42.308 20.80 15.87 34.41 2.59
3998 4837 6.036844 TGAGAGCGACGGTGATGTATATATAC 59.963 42.308 14.86 14.86 0.00 1.47
4001 4840 4.153655 GTGAGAGCGACGGTGATGTATATA 59.846 45.833 3.31 0.00 0.00 0.86
4003 4842 2.289820 GTGAGAGCGACGGTGATGTATA 59.710 50.000 3.31 0.00 0.00 1.47
4004 4843 1.065701 GTGAGAGCGACGGTGATGTAT 59.934 52.381 3.31 0.00 0.00 2.29
4005 4844 0.450583 GTGAGAGCGACGGTGATGTA 59.549 55.000 3.31 0.00 0.00 2.29
4006 4845 1.213013 GTGAGAGCGACGGTGATGT 59.787 57.895 3.31 0.00 0.00 3.06
4007 4846 0.799917 CTGTGAGAGCGACGGTGATG 60.800 60.000 3.31 0.00 0.00 3.07
4008 4847 1.244697 ACTGTGAGAGCGACGGTGAT 61.245 55.000 3.31 0.00 31.49 3.06
4017 4856 0.681733 TGGGTTGAGACTGTGAGAGC 59.318 55.000 0.00 0.00 0.00 4.09
4025 4864 0.617413 CCATCAGCTGGGTTGAGACT 59.383 55.000 15.13 0.00 41.82 3.24
4027 4866 1.211212 CATCCATCAGCTGGGTTGAGA 59.789 52.381 15.13 9.21 45.98 3.27
4028 4867 1.676746 CATCCATCAGCTGGGTTGAG 58.323 55.000 15.13 4.54 45.98 3.02
4029 4868 0.256752 CCATCCATCAGCTGGGTTGA 59.743 55.000 15.13 6.25 45.98 3.18
4030 4869 0.033796 ACCATCCATCAGCTGGGTTG 60.034 55.000 15.13 12.72 45.98 3.77
4031 4870 0.706433 AACCATCCATCAGCTGGGTT 59.294 50.000 15.13 14.92 45.98 4.11
4038 4877 0.179156 GCACGCAAACCATCCATCAG 60.179 55.000 0.00 0.00 0.00 2.90
4144 4983 1.153549 GAGGTGATCGGTGCAGGTC 60.154 63.158 0.00 0.00 0.00 3.85
4195 5034 2.730069 TCTTGCACGCAAATGAACAAG 58.270 42.857 5.87 0.00 35.33 3.16
4196 5035 2.859526 TCTTGCACGCAAATGAACAA 57.140 40.000 5.87 0.00 35.33 2.83
4197 5036 2.859526 TTCTTGCACGCAAATGAACA 57.140 40.000 5.87 0.00 35.33 3.18
4201 5040 3.567530 TGATCTTTCTTGCACGCAAATG 58.432 40.909 5.87 0.00 35.33 2.32
4202 5041 3.921119 TGATCTTTCTTGCACGCAAAT 57.079 38.095 5.87 0.00 35.33 2.32
4224 5063 8.277713 TCGACAAAAGAGAATTTTTAGTAACGG 58.722 33.333 0.00 0.00 0.00 4.44
4228 5067 8.234546 GGCATCGACAAAAGAGAATTTTTAGTA 58.765 33.333 0.00 0.00 0.00 1.82
4230 5069 6.249260 CGGCATCGACAAAAGAGAATTTTTAG 59.751 38.462 0.00 0.00 39.00 1.85
4232 5071 4.917415 CGGCATCGACAAAAGAGAATTTTT 59.083 37.500 0.00 0.00 39.00 1.94
4234 5073 3.670627 GCGGCATCGACAAAAGAGAATTT 60.671 43.478 0.00 0.00 39.00 1.82
4235 5074 2.159517 GCGGCATCGACAAAAGAGAATT 60.160 45.455 0.00 0.00 39.00 2.17
4236 5075 1.398390 GCGGCATCGACAAAAGAGAAT 59.602 47.619 0.00 0.00 39.00 2.40
4238 5077 0.037326 AGCGGCATCGACAAAAGAGA 60.037 50.000 1.45 0.00 39.00 3.10
4239 5078 0.371645 GAGCGGCATCGACAAAAGAG 59.628 55.000 1.45 0.00 39.00 2.85
4242 5081 0.237235 GTTGAGCGGCATCGACAAAA 59.763 50.000 1.45 0.00 39.00 2.44
4243 5082 0.602638 AGTTGAGCGGCATCGACAAA 60.603 50.000 16.73 0.00 36.24 2.83
4244 5083 1.005037 AGTTGAGCGGCATCGACAA 60.005 52.632 16.73 7.25 36.24 3.18
4245 5084 1.737735 CAGTTGAGCGGCATCGACA 60.738 57.895 16.73 2.54 36.24 4.35
4246 5085 0.807667 ATCAGTTGAGCGGCATCGAC 60.808 55.000 1.45 7.18 39.00 4.20
4247 5086 0.528466 GATCAGTTGAGCGGCATCGA 60.528 55.000 1.45 0.00 39.00 3.59
4248 5087 1.493950 GGATCAGTTGAGCGGCATCG 61.494 60.000 1.45 0.00 39.81 3.84
4249 5088 0.179062 AGGATCAGTTGAGCGGCATC 60.179 55.000 1.45 0.00 0.00 3.91
4250 5089 0.254178 AAGGATCAGTTGAGCGGCAT 59.746 50.000 1.45 0.00 0.00 4.40
4253 5092 0.449388 GCAAAGGATCAGTTGAGCGG 59.551 55.000 10.83 0.00 0.00 5.52
4255 5094 1.135859 CGTGCAAAGGATCAGTTGAGC 60.136 52.381 10.83 5.24 0.00 4.26
4315 5173 1.556911 AGAAGATGGGCGTCTTGATGT 59.443 47.619 8.28 0.00 38.51 3.06
4449 5308 5.118990 CAGGCTTTCCTCGATCTGATTAAA 58.881 41.667 0.00 0.00 41.93 1.52
4460 5319 4.803908 GGGGCCAGGCTTTCCTCG 62.804 72.222 12.43 0.00 41.93 4.63
4559 5418 6.636850 CGAGTTGAATTGTTCTTTTACCTTGG 59.363 38.462 0.00 0.00 0.00 3.61
4585 5496 4.963373 TCAATCGGTTAGGTTTCAAGTGA 58.037 39.130 0.00 0.00 0.00 3.41
4590 5501 8.533657 TCTAGTTATTCAATCGGTTAGGTTTCA 58.466 33.333 0.00 0.00 0.00 2.69
4591 5502 8.937634 TCTAGTTATTCAATCGGTTAGGTTTC 57.062 34.615 0.00 0.00 0.00 2.78
4608 5523 4.096382 CGCAATGGCTTTGGTTCTAGTTAT 59.904 41.667 14.12 0.00 38.10 1.89
4616 5533 2.049248 CGCGCAATGGCTTTGGTT 60.049 55.556 8.75 0.00 38.10 3.67
4640 5558 7.625828 AGGAGTATTGTGTTTTGCCTATAAC 57.374 36.000 0.00 0.00 0.00 1.89
4644 5562 6.065374 TGAAAGGAGTATTGTGTTTTGCCTA 58.935 36.000 0.00 0.00 0.00 3.93
4697 5615 7.446013 TGTGAACAAAAATTACTTACTCCGGAT 59.554 33.333 3.57 0.00 0.00 4.18
4715 5633 5.125900 CCCTGAAATCTGCATATGTGAACAA 59.874 40.000 4.29 0.00 0.00 2.83
4731 5649 1.064166 CCACCATCTGCTCCCTGAAAT 60.064 52.381 0.00 0.00 0.00 2.17
4738 5656 4.154296 GATGCCACCATCTGCTCC 57.846 61.111 0.00 0.00 43.62 4.70
4856 5774 5.163195 ACACTTCTACCTTGTTCTGAATGGT 60.163 40.000 14.03 14.03 35.05 3.55
4878 5796 6.345096 TGATGAGACTTGATGTGTTCTACA 57.655 37.500 0.00 0.00 44.87 2.74
4879 5797 5.290643 GCTGATGAGACTTGATGTGTTCTAC 59.709 44.000 0.00 0.00 0.00 2.59
4880 5798 5.186603 AGCTGATGAGACTTGATGTGTTCTA 59.813 40.000 0.00 0.00 0.00 2.10
4881 5799 4.020396 AGCTGATGAGACTTGATGTGTTCT 60.020 41.667 0.00 0.00 0.00 3.01
4885 5803 3.803231 GCTAGCTGATGAGACTTGATGTG 59.197 47.826 7.70 0.00 0.00 3.21
4904 5822 8.561212 ACGAAAGTGTAAAATGTGTAAATGCTA 58.439 29.630 0.00 0.00 46.97 3.49
4905 5823 7.422399 ACGAAAGTGTAAAATGTGTAAATGCT 58.578 30.769 0.00 0.00 46.97 3.79
4920 5863 8.645730 TTACATGAACTGTTAACGAAAGTGTA 57.354 30.769 0.00 3.79 40.99 2.90
4957 5902 3.813443 AGCGATCCTCTGTATTTGCAAT 58.187 40.909 0.00 0.00 0.00 3.56
4978 5923 7.323420 CAAAGTACCAATCACTGACAGATCTA 58.677 38.462 10.08 0.00 0.00 1.98
4980 5925 5.352569 CCAAAGTACCAATCACTGACAGATC 59.647 44.000 10.08 0.00 0.00 2.75
4988 5933 1.613255 CCGGCCAAAGTACCAATCACT 60.613 52.381 2.24 0.00 0.00 3.41
4990 5935 0.322997 CCCGGCCAAAGTACCAATCA 60.323 55.000 2.24 0.00 0.00 2.57
5081 6026 2.501610 GAGACGGCCCTAGCTTGG 59.498 66.667 7.29 7.29 39.73 3.61
5095 6040 3.229697 TCCTAATCATGAGGCTCGAGA 57.770 47.619 18.75 10.48 33.73 4.04
5156 6102 3.431486 GGCCTGAAGTGAAGTCTCTATGG 60.431 52.174 0.00 0.00 0.00 2.74
5259 6205 4.482398 AGAAAAATTGGGGGTATAGCCTCT 59.518 41.667 21.28 10.29 38.03 3.69
5260 6206 4.804597 AGAAAAATTGGGGGTATAGCCTC 58.195 43.478 20.03 17.32 36.85 4.70
5263 6209 4.036380 CACGAGAAAAATTGGGGGTATAGC 59.964 45.833 0.00 0.00 0.00 2.97
5264 6210 5.433526 TCACGAGAAAAATTGGGGGTATAG 58.566 41.667 0.00 0.00 0.00 1.31
5265 6211 5.438698 TCACGAGAAAAATTGGGGGTATA 57.561 39.130 0.00 0.00 0.00 1.47
5266 6212 4.310022 TCACGAGAAAAATTGGGGGTAT 57.690 40.909 0.00 0.00 0.00 2.73
5288 6250 4.383118 GGCATAGAGAGTTGGCTGTCTTTA 60.383 45.833 0.00 0.00 41.91 1.85
5363 6325 1.003696 GAAGGACTAGGTGCAAGCCTT 59.996 52.381 0.51 6.73 39.94 4.35
5408 6370 5.711506 ACAATGGATCTCACTTTGCAATGTA 59.288 36.000 16.71 3.54 27.31 2.29
5478 6440 4.681074 AGGCTAACTATCTGGAAAGCTC 57.319 45.455 0.00 0.00 0.00 4.09
5479 6441 4.775236 CAAGGCTAACTATCTGGAAAGCT 58.225 43.478 0.00 0.00 0.00 3.74
5480 6442 3.313803 GCAAGGCTAACTATCTGGAAAGC 59.686 47.826 0.00 0.00 0.00 3.51
5481 6443 4.517285 TGCAAGGCTAACTATCTGGAAAG 58.483 43.478 0.00 0.00 0.00 2.62
5482 6444 4.568072 TGCAAGGCTAACTATCTGGAAA 57.432 40.909 0.00 0.00 0.00 3.13
5483 6445 4.568072 TTGCAAGGCTAACTATCTGGAA 57.432 40.909 0.00 0.00 0.00 3.53
5484 6446 4.568072 TTTGCAAGGCTAACTATCTGGA 57.432 40.909 0.00 0.00 0.00 3.86
5485 6447 6.291377 TCTATTTGCAAGGCTAACTATCTGG 58.709 40.000 0.00 0.00 0.00 3.86
5486 6448 6.426328 CCTCTATTTGCAAGGCTAACTATCTG 59.574 42.308 0.00 0.00 0.00 2.90
5487 6449 6.327626 TCCTCTATTTGCAAGGCTAACTATCT 59.672 38.462 0.00 0.00 0.00 1.98
5488 6450 6.525629 TCCTCTATTTGCAAGGCTAACTATC 58.474 40.000 0.00 0.00 0.00 2.08
5489 6451 6.500589 TCCTCTATTTGCAAGGCTAACTAT 57.499 37.500 0.00 0.00 0.00 2.12
5490 6452 5.950544 TCCTCTATTTGCAAGGCTAACTA 57.049 39.130 0.00 0.00 0.00 2.24
5491 6453 4.844349 TCCTCTATTTGCAAGGCTAACT 57.156 40.909 0.00 0.00 0.00 2.24
5492 6454 5.897377 TTTCCTCTATTTGCAAGGCTAAC 57.103 39.130 0.00 0.00 0.00 2.34
5493 6455 6.426587 AGATTTCCTCTATTTGCAAGGCTAA 58.573 36.000 0.00 0.00 30.26 3.09
5494 6456 6.006275 AGATTTCCTCTATTTGCAAGGCTA 57.994 37.500 0.00 0.00 30.26 3.93
5495 6457 4.864726 AGATTTCCTCTATTTGCAAGGCT 58.135 39.130 0.00 0.00 30.26 4.58
5496 6458 5.588958 AAGATTTCCTCTATTTGCAAGGC 57.411 39.130 0.00 0.00 32.41 4.35
5497 6459 5.809051 GCAAAGATTTCCTCTATTTGCAAGG 59.191 40.000 14.18 0.00 43.04 3.61
5498 6460 6.392354 TGCAAAGATTTCCTCTATTTGCAAG 58.608 36.000 18.17 0.00 46.88 4.01
5499 6461 6.343716 TGCAAAGATTTCCTCTATTTGCAA 57.656 33.333 18.17 0.00 46.88 4.08
5505 6467 5.441718 TGTCCTGCAAAGATTTCCTCTAT 57.558 39.130 0.00 0.00 32.41 1.98
5523 6485 3.857052 TCGTACAATGACCTCAATGTCC 58.143 45.455 0.00 0.00 39.07 4.02
5536 6498 1.139058 GGGATGTCTGGCTCGTACAAT 59.861 52.381 0.00 0.00 0.00 2.71
5580 6542 8.859517 ACTTTAAGTACTCGAATAAGAGCATC 57.140 34.615 0.00 0.00 41.77 3.91
5583 6545 9.947669 TCATACTTTAAGTACTCGAATAAGAGC 57.052 33.333 7.00 0.00 41.77 4.09
5595 6557 8.958119 TGATCCAACCATCATACTTTAAGTAC 57.042 34.615 7.00 0.00 32.84 2.73
5645 6607 0.872881 GAATTGTCATGCGGCATGGC 60.873 55.000 34.14 34.14 45.49 4.40
5686 6648 4.808895 TCGTCGGATGTTTGGATCAATTAG 59.191 41.667 0.00 0.00 0.00 1.73
5707 6669 1.003233 AGGTGAGTAAAGGGGCTTTCG 59.997 52.381 0.00 0.00 35.21 3.46
5709 6671 3.850173 TGATAGGTGAGTAAAGGGGCTTT 59.150 43.478 0.00 0.00 37.46 3.51
5820 6782 5.822519 TGATGTTCATGGTGCCTAGTTTATC 59.177 40.000 0.00 0.00 0.00 1.75
5827 6789 3.430236 CGTAGTGATGTTCATGGTGCCTA 60.430 47.826 0.00 0.00 0.00 3.93
5831 6793 1.665679 GGCGTAGTGATGTTCATGGTG 59.334 52.381 0.00 0.00 0.00 4.17
5856 6818 1.271652 TGGTCCAATTGGCGCTTTCTA 60.272 47.619 20.33 0.00 34.44 2.10
5865 6827 2.736081 CGTCATTGCATGGTCCAATTGG 60.736 50.000 19.08 19.08 30.90 3.16
5869 6831 1.452110 CTCGTCATTGCATGGTCCAA 58.548 50.000 0.00 0.00 0.00 3.53
6011 6973 2.798976 TGCTTGTTCATGTTCCTTGC 57.201 45.000 0.00 0.00 0.00 4.01
6013 6975 3.565307 TCCTTGCTTGTTCATGTTCCTT 58.435 40.909 0.00 0.00 0.00 3.36
6025 6987 4.754114 GTCTTGGCTATCTATCCTTGCTTG 59.246 45.833 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.