AutoCloner

Multiple sequence alignment - TraesCS2D01G372600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G372600	chr2D	100.000	2903	0	0	1	2903	476698043	476695141	0.000000e+00	5361.0
1	TraesCS2D01G372600	chr2D	92.683	164	10	2	342	503	474662770	474662607	4.840000e-58	235.0
2	TraesCS2D01G372600	chr2D	95.506	89	2	2	579	667	642214251	642214337	1.080000e-29	141.0
3	TraesCS2D01G372600	chr2D	95.506	89	1	3	578	666	275248991	275248906	3.900000e-29	139.0
4	TraesCS2D01G372600	chr2A	95.300	2149	67	14	760	2903	618982884	618980765	0.000000e+00	3378.0
5	TraesCS2D01G372600	chr2A	86.420	243	23	5	52	292	618984411	618984177	1.030000e-64	257.0
6	TraesCS2D01G372600	chr2B	93.658	1908	73	16	709	2606	557816449	557814580	0.000000e+00	2809.0
7	TraesCS2D01G372600	chr2B	89.171	591	30	13	4	569	557824352	557823771	0.000000e+00	706.0
8	TraesCS2D01G372600	chr2B	94.828	116	4	2	579	694	557816547	557816434	2.300000e-41	180.0
9	TraesCS2D01G372600	chr2B	89.610	77	3	5	2635	2708	789491060	789490986	3.080000e-15	93.5
10	TraesCS2D01G372600	chr6B	85.546	678	77	14	1150	1809	471676729	471676055	0.000000e+00	689.0
11	TraesCS2D01G372600	chr6B	91.667	96	6	2	573	667	142130950	142130856	6.530000e-27	132.0
12	TraesCS2D01G372600	chr6B	88.750	80	4	5	2632	2708	688679626	688679549	3.080000e-15	93.5
13	TraesCS2D01G372600	chr6A	84.808	678	82	15	1150	1809	409432215	409431541	0.000000e+00	662.0
14	TraesCS2D01G372600	chr6A	88.312	77	4	5	2635	2708	44397689	44397615	1.430000e-13	87.9
15	TraesCS2D01G372600	chr6A	87.500	80	5	5	2632	2708	477041597	477041674	1.430000e-13	87.9
16	TraesCS2D01G372600	chr6D	83.676	680	80	14	1147	1809	305172777	305173442	1.910000e-171	612.0
17	TraesCS2D01G372600	chr6D	93.038	158	5	1	343	500	376938970	376939121	2.910000e-55	226.0
18	TraesCS2D01G372600	chr6D	95.604	91	3	1	577	667	202257125	202257036	8.380000e-31	145.0
19	TraesCS2D01G372600	chr7B	93.939	165	9	1	342	505	678029338	678029174	6.210000e-62	248.0
20	TraesCS2D01G372600	chr7B	89.610	77	3	5	2635	2708	614526039	614525965	3.080000e-15	93.5
21	TraesCS2D01G372600	chr4D	95.862	145	6	0	364	508	35722344	35722488	4.840000e-58	235.0
22	TraesCS2D01G372600	chr4D	93.258	89	3	3	579	667	506089458	506089543	8.440000e-26	128.0
23	TraesCS2D01G372600	chr1D	90.659	182	5	6	336	515	112352193	112352022	6.260000e-57	231.0
24	TraesCS2D01G372600	chr3D	92.073	164	10	3	342	504	481712808	481712969	8.090000e-56	228.0
25	TraesCS2D01G372600	chr3D	91.358	162	13	1	343	503	582171488	582171327	1.350000e-53	220.0
26	TraesCS2D01G372600	chr3D	93.333	90	4	2	576	665	125801132	125801219	6.530000e-27	132.0
27	TraesCS2D01G372600	chr4A	90.698	172	10	3	343	508	13582547	13582718	1.050000e-54	224.0
28	TraesCS2D01G372600	chr4A	86.517	89	4	7	2629	2714	624263614	624263531	1.110000e-14	91.6
29	TraesCS2D01G372600	chr5B	89.820	167	15	2	340	504	485445700	485445866	2.270000e-51	213.0
30	TraesCS2D01G372600	chr5B	88.312	77	4	5	2635	2708	469263738	469263664	1.430000e-13	87.9
31	TraesCS2D01G372600	chr5B	87.500	80	5	5	2632	2708	564943699	564943776	1.430000e-13	87.9
32	TraesCS2D01G372600	chr3B	94.444	90	3	2	578	667	294590375	294590288	1.400000e-28	137.0
33	TraesCS2D01G372600	chr3B	84.043	94	9	6	2618	2708	632772831	632772741	5.150000e-13	86.1
34	TraesCS2D01G372600	chr7D	93.407	91	3	3	577	667	451043913	451044000	6.530000e-27	132.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G372600	chr2D	476695141	476698043	2902	True	5361.0	5361	100.000	1	2903	1	chr2D.!!$R3	2902
1	TraesCS2D01G372600	chr2A	618980765	618984411	3646	True	1817.5	3378	90.860	52	2903	2	chr2A.!!$R1	2851
2	TraesCS2D01G372600	chr2B	557814580	557816547	1967	True	1494.5	2809	94.243	579	2606	2	chr2B.!!$R3	2027
3	TraesCS2D01G372600	chr2B	557823771	557824352	581	True	706.0	706	89.171	4	569	1	chr2B.!!$R1	565
4	TraesCS2D01G372600	chr6B	471676055	471676729	674	True	689.0	689	85.546	1150	1809	1	chr6B.!!$R2	659
5	TraesCS2D01G372600	chr6A	409431541	409432215	674	True	662.0	662	84.808	1150	1809	1	chr6A.!!$R2	659
6	TraesCS2D01G372600	chr6D	305172777	305173442	665	False	612.0	612	83.676	1147	1809	1	chr6D.!!$F1	662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
904	2059	1.278127	CCCACCACTACCTACCTGTTG	59.722	57.143	0.0	0.0	0.0	3.33	F
1726	2908	1.373497	GCCATCGACCGCATAGAGG	60.373	63.158	0.0	0.0	0.0	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1855	3037	1.423794	TTGTTTTCCCCTCCTCCGCT	61.424	55.000	0.0	0.0	0.0	5.52	R
2854	4049	2.027653	TCGCAGGAATGTGGTCAATACA	60.028	45.455	0.0	0.0	0.0	2.29	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	6.216662	TCACTGGGGAACAAAATATAAGGAGA	59.783	38.462	0.00	0.00	0.00	3.71
33	34	6.543831	CACTGGGGAACAAAATATAAGGAGAG	59.456	42.308	0.00	0.00	0.00	3.20
202	203	7.989416	TTTTTAGATCAACGAATAGGGTGTT	57.011	32.000	0.00	0.00	0.00	3.32
346	349	5.850614	TCAAGTAGTGTAAGAGTTTGGGTC	58.149	41.667	0.00	0.00	0.00	4.46
350	353	4.338379	AGTGTAAGAGTTTGGGTCTGTC	57.662	45.455	0.00	0.00	0.00	3.51
361	364	2.902608	TGGGTCTGTCTAGGACACATT	58.097	47.619	0.00	0.00	41.46	2.71
364	367	4.222145	TGGGTCTGTCTAGGACACATTTAC	59.778	45.833	0.00	0.00	41.46	2.01
444	467	9.734620	TTGTTTCTTGTTGCTGCATTATATATC	57.265	29.630	1.84	0.00	0.00	1.63
446	469	9.390795	GTTTCTTGTTGCTGCATTATATATCTG	57.609	33.333	1.84	0.00	0.00	2.90
448	471	8.091385	TCTTGTTGCTGCATTATATATCTGTG	57.909	34.615	1.84	0.00	0.00	3.66
663	712	9.226606	CATCCAAAATAAGGCTACGGATAATAA	57.773	33.333	0.00	0.00	30.70	1.40
665	714	8.653191	TCCAAAATAAGGCTACGGATAATAAGA	58.347	33.333	0.00	0.00	0.00	2.10
688	737	7.855375	AGAGACTTGGTAAATTCTCATGATGA	58.145	34.615	0.00	0.00	41.99	2.92
689	738	7.986320	AGAGACTTGGTAAATTCTCATGATGAG	59.014	37.037	16.15	16.15	45.59	2.90
731	780	2.364647	TCATGATGAGAGCTAGCCACAG	59.635	50.000	12.13	0.00	0.00	3.66
788	1943	1.902508	TGAGACATCTCCTTTCGCCTT	59.097	47.619	6.44	0.00	42.20	4.35
904	2059	1.278127	CCCACCACTACCTACCTGTTG	59.722	57.143	0.00	0.00	0.00	3.33
1698	2880	2.679837	CAACAAGATCTACGCCAAGCAT	59.320	45.455	0.00	0.00	0.00	3.79
1722	2904	2.421314	CAGGCCATCGACCGCATA	59.579	61.111	5.01	0.00	0.00	3.14
1726	2908	1.373497	GCCATCGACCGCATAGAGG	60.373	63.158	0.00	0.00	0.00	3.69
1755	2937	4.047166	TGGAGAGGGACATGTTTATGGAT	58.953	43.478	0.00	0.00	38.66	3.41
1758	2940	3.071602	AGAGGGACATGTTTATGGATCCG	59.928	47.826	7.39	0.00	38.66	4.18
1809	2991	4.148825	GTCATCGAGCACCGCCCT	62.149	66.667	0.00	0.00	38.37	5.19
1855	3037	2.357034	GCGAGCCACCGAAGAACA	60.357	61.111	0.00	0.00	0.00	3.18
2137	3319	9.121517	GTTGATGTTATGTTTGTCTGAAATCAG	57.878	33.333	3.99	3.99	45.08	2.90
2169	3355	4.382291	ACATAAAGGATAAACGCGGCATA	58.618	39.130	12.47	0.00	0.00	3.14
2417	3603	3.565482	TCAATGCTGTCCAGTTTGTCTTC	59.435	43.478	10.06	0.00	0.00	2.87
2606	3801	5.928264	GCTTTTGCATTTGATAGGTCAAACT	59.072	36.000	5.80	0.00	44.98	2.66
2608	3803	7.062255	GCTTTTGCATTTGATAGGTCAAACTAC	59.938	37.037	5.80	0.73	44.98	2.73
2618	3813	9.513906	TTGATAGGTCAAACTACATGAATTGAA	57.486	29.630	0.00	0.00	41.22	2.69
2647	3842	7.961326	AAGTTAACTAATACTCCCTCCGTTA	57.039	36.000	8.92	0.00	0.00	3.18
2650	3845	7.562821	AGTTAACTAATACTCCCTCCGTTACAT	59.437	37.037	6.26	0.00	0.00	2.29
2651	3846	8.850156	GTTAACTAATACTCCCTCCGTTACATA	58.150	37.037	0.00	0.00	0.00	2.29
2652	3847	7.902920	AACTAATACTCCCTCCGTTACATAA	57.097	36.000	0.00	0.00	0.00	1.90
2653	3848	8.488308	AACTAATACTCCCTCCGTTACATAAT	57.512	34.615	0.00	0.00	0.00	1.28
2655	3850	8.583296	ACTAATACTCCCTCCGTTACATAATTC	58.417	37.037	0.00	0.00	0.00	2.17
2656	3851	7.613551	AATACTCCCTCCGTTACATAATTCT	57.386	36.000	0.00	0.00	0.00	2.40
2657	3852	5.532664	ACTCCCTCCGTTACATAATTCTC	57.467	43.478	0.00	0.00	0.00	2.87
2658	3853	4.037684	ACTCCCTCCGTTACATAATTCTCG	59.962	45.833	0.00	0.00	0.00	4.04
2659	3854	3.956199	TCCCTCCGTTACATAATTCTCGT	59.044	43.478	0.00	0.00	0.00	4.18
2660	3855	4.037208	TCCCTCCGTTACATAATTCTCGTC	59.963	45.833	0.00	0.00	0.00	4.20
2661	3856	4.202080	CCCTCCGTTACATAATTCTCGTCA	60.202	45.833	0.00	0.00	0.00	4.35
2662	3857	5.509163	CCCTCCGTTACATAATTCTCGTCAT	60.509	44.000	0.00	0.00	0.00	3.06
2663	3858	5.402568	CCTCCGTTACATAATTCTCGTCATG	59.597	44.000	0.00	0.00	0.00	3.07
2664	3859	5.286438	TCCGTTACATAATTCTCGTCATGG	58.714	41.667	0.00	0.00	0.00	3.66
2665	3860	5.047847	CCGTTACATAATTCTCGTCATGGT	58.952	41.667	0.00	0.00	0.00	3.55
2666	3861	5.522460	CCGTTACATAATTCTCGTCATGGTT	59.478	40.000	0.00	0.00	0.00	3.67
2667	3862	6.036735	CCGTTACATAATTCTCGTCATGGTTT	59.963	38.462	0.00	0.00	0.00	3.27
2668	3863	7.413657	CCGTTACATAATTCTCGTCATGGTTTT	60.414	37.037	0.00	0.00	0.00	2.43
2669	3864	8.597227	CGTTACATAATTCTCGTCATGGTTTTA	58.403	33.333	0.00	0.00	0.00	1.52
2670	3865	9.916397	GTTACATAATTCTCGTCATGGTTTTAG	57.084	33.333	0.00	0.00	0.00	1.85
2671	3866	9.661563	TTACATAATTCTCGTCATGGTTTTAGT	57.338	29.630	0.00	0.00	0.00	2.24
2672	3867	8.561738	ACATAATTCTCGTCATGGTTTTAGTT	57.438	30.769	0.00	0.00	0.00	2.24
2673	3868	8.665685	ACATAATTCTCGTCATGGTTTTAGTTC	58.334	33.333	0.00	0.00	0.00	3.01
2674	3869	8.664798	CATAATTCTCGTCATGGTTTTAGTTCA	58.335	33.333	0.00	0.00	0.00	3.18
2675	3870	7.504924	AATTCTCGTCATGGTTTTAGTTCAA	57.495	32.000	0.00	0.00	0.00	2.69
2676	3871	6.928979	TTCTCGTCATGGTTTTAGTTCAAA	57.071	33.333	0.00	0.00	0.00	2.69
2677	3872	6.295039	TCTCGTCATGGTTTTAGTTCAAAC	57.705	37.500	0.00	0.00	36.12	2.93
2688	3883	6.492254	GTTTTAGTTCAAACCACGACAAGAT	58.508	36.000	0.00	0.00	31.43	2.40
2720	3915	4.080687	GAGGGAGTACACAGTAGTCAGTT	58.919	47.826	12.53	0.09	0.00	3.16
2727	3922	2.903784	ACACAGTAGTCAGTTGGCCATA	59.096	45.455	6.09	0.00	0.00	2.74
2730	3925	4.943705	CACAGTAGTCAGTTGGCCATATTT	59.056	41.667	6.09	0.00	0.00	1.40
2734	3929	6.010219	AGTAGTCAGTTGGCCATATTTTTGT	58.990	36.000	6.09	0.00	0.00	2.83
2736	3931	7.834181	AGTAGTCAGTTGGCCATATTTTTGTAT	59.166	33.333	6.09	0.00	0.00	2.29
2740	3935	6.435591	TCAGTTGGCCATATTTTTGTATCACA	59.564	34.615	6.09	0.00	0.00	3.58
2779	3974	0.833287	TCTAGCATTCTCCTGGTGCC	59.167	55.000	3.63	0.00	39.62	5.01
2835	4030	6.894654	TGGCAATAAAGTTTGAGGATCCATTA	59.105	34.615	15.82	0.00	0.00	1.90
2862	4057	9.444600	TTTCCTTAATAGGTGTCTTGTATTGAC	57.555	33.333	0.00	0.00	42.60	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
12	13	8.589701	TTTTCTCTCCTTATATTTTGTTCCCC	57.410	34.615	0.00	0.00	0.00	4.81
40	41	3.227810	GGACTCGTCCGTCTGTTTTAT	57.772	47.619	0.00	0.00	40.36	1.40
41	42	2.712057	GGACTCGTCCGTCTGTTTTA	57.288	50.000	0.00	0.00	40.36	1.52
85	86	2.383855	CTCCTCTTCCCTGTCTGGTAG	58.616	57.143	0.00	0.00	0.00	3.18
299	302	7.833682	TGATTTTATGTGAAGATATGTGTGGGT	59.166	33.333	0.00	0.00	0.00	4.51
346	349	7.436673	GCTTAGATGTAAATGTGTCCTAGACAG	59.563	40.741	0.00	0.00	43.57	3.51
350	353	7.492524	TCAGCTTAGATGTAAATGTGTCCTAG	58.507	38.462	0.00	0.00	0.00	3.02
415	438	5.876612	AATGCAGCAACAAGAAACAAAAA	57.123	30.435	0.00	0.00	0.00	1.94
431	454	5.987098	AGCTCCCACAGATATATAATGCAG	58.013	41.667	0.00	0.00	0.00	4.41
435	458	9.499369	ACATCTAAGCTCCCACAGATATATAAT	57.501	33.333	0.00	0.00	0.00	1.28
444	467	2.234661	TGTCACATCTAAGCTCCCACAG	59.765	50.000	0.00	0.00	0.00	3.66
446	469	3.462021	GATGTCACATCTAAGCTCCCAC	58.538	50.000	10.81	0.00	0.00	4.61
448	471	2.703007	AGGATGTCACATCTAAGCTCCC	59.297	50.000	17.46	0.00	0.00	4.30
579	628	7.765360	GTCATGATGGCATTTCCTCAAAATAAA	59.235	33.333	0.00	0.00	35.77	1.40
580	629	7.124599	AGTCATGATGGCATTTCCTCAAAATAA	59.875	33.333	0.00	0.00	35.77	1.40
582	631	5.424252	AGTCATGATGGCATTTCCTCAAAAT	59.576	36.000	0.00	0.00	38.11	1.82
583	632	4.773674	AGTCATGATGGCATTTCCTCAAAA	59.226	37.500	0.00	0.00	35.26	2.44
584	633	4.346730	AGTCATGATGGCATTTCCTCAAA	58.653	39.130	0.00	0.00	35.26	2.69
585	634	3.972133	AGTCATGATGGCATTTCCTCAA	58.028	40.909	0.00	0.00	35.26	3.02
586	635	3.657398	AGTCATGATGGCATTTCCTCA	57.343	42.857	0.00	0.00	35.26	3.86
587	636	3.501445	GCTAGTCATGATGGCATTTCCTC	59.499	47.826	0.00	0.00	35.26	3.71
630	679	6.912591	CGTAGCCTTATTTTGGATGATTTGTC	59.087	38.462	0.00	0.00	0.00	3.18
770	1924	1.134965	CGAAGGCGAAAGGAGATGTCT	60.135	52.381	0.00	0.00	40.82	3.41
788	1943	1.610624	CCCTTACCAGAAAGCTTGCGA	60.611	52.381	0.00	0.00	0.00	5.10
904	2059	4.247380	CTGCGAGGATGGGGGAGC	62.247	72.222	0.00	0.00	0.00	4.70
1095	2250	0.423956	TTAGGGGATTGGGTCTGGGA	59.576	55.000	0.00	0.00	0.00	4.37
1096	2251	1.063942	GTTTAGGGGATTGGGTCTGGG	60.064	57.143	0.00	0.00	0.00	4.45
1365	2535	1.141449	CTCGAGGAAGAGCAGCTGG	59.859	63.158	17.12	0.00	0.00	4.85
1575	2757	0.883370	GGATCATAACCCGGGCGTTC	60.883	60.000	24.08	11.06	0.00	3.95
1722	2904	2.091555	GTCCCTCTCCATACACTCCTCT	60.092	54.545	0.00	0.00	0.00	3.69
1726	2908	3.034635	ACATGTCCCTCTCCATACACTC	58.965	50.000	0.00	0.00	0.00	3.51
1809	2991	3.616821	CGGCATCAGAAACGAGTGAAATA	59.383	43.478	0.00	0.00	0.00	1.40
1845	3027	1.878656	CTCCTCCGCTGTTCTTCGGT	61.879	60.000	0.47	0.00	45.44	4.69
1855	3037	1.423794	TTGTTTTCCCCTCCTCCGCT	61.424	55.000	0.00	0.00	0.00	5.52
2137	3319	3.595190	ATCCTTTATGTTGGGCTACCC	57.405	47.619	0.00	0.00	45.71	3.69
2169	3355	6.861055	CGAAAAATGTGCCTACTGTTGTAAAT	59.139	34.615	0.00	0.00	0.00	1.40
2243	3429	5.047306	TCGAACACAGGATACAAGAATCAGT	60.047	40.000	0.00	0.00	41.41	3.41
2258	3444	5.225129	GCGCAACTAAAATTATCGAACACAG	59.775	40.000	0.30	0.00	0.00	3.66
2545	3740	4.082733	GGGTTTGTTTTCAGTGATAGGCTC	60.083	45.833	0.00	0.00	0.00	4.70
2618	3813	7.015001	CGGAGGGAGTATTAGTTAACTTATGGT	59.985	40.741	14.49	2.03	0.00	3.55
2647	3842	8.561738	AACTAAAACCATGACGAGAATTATGT	57.438	30.769	0.00	0.00	0.00	2.29
2650	3845	8.610248	TTGAACTAAAACCATGACGAGAATTA	57.390	30.769	0.00	0.00	0.00	1.40
2651	3846	7.504924	TTGAACTAAAACCATGACGAGAATT	57.495	32.000	0.00	0.00	0.00	2.17
2652	3847	7.360361	GTTTGAACTAAAACCATGACGAGAAT	58.640	34.615	0.00	0.00	34.58	2.40
2653	3848	6.721321	GTTTGAACTAAAACCATGACGAGAA	58.279	36.000	0.00	0.00	34.58	2.87
2664	3859	5.871539	TCTTGTCGTGGTTTGAACTAAAAC	58.128	37.500	0.00	0.00	38.96	2.43
2665	3860	6.687081	ATCTTGTCGTGGTTTGAACTAAAA	57.313	33.333	0.00	0.00	0.00	1.52
2666	3861	6.687081	AATCTTGTCGTGGTTTGAACTAAA	57.313	33.333	0.00	0.00	0.00	1.85
2667	3862	6.687081	AAATCTTGTCGTGGTTTGAACTAA	57.313	33.333	0.00	0.00	0.00	2.24
2668	3863	7.094975	CCATAAATCTTGTCGTGGTTTGAACTA	60.095	37.037	0.00	0.00	0.00	2.24
2669	3864	6.293955	CCATAAATCTTGTCGTGGTTTGAACT	60.294	38.462	0.00	0.00	0.00	3.01
2670	3865	5.856455	CCATAAATCTTGTCGTGGTTTGAAC	59.144	40.000	0.00	0.00	0.00	3.18
2671	3866	5.765677	TCCATAAATCTTGTCGTGGTTTGAA	59.234	36.000	0.00	0.00	0.00	2.69
2672	3867	5.309638	TCCATAAATCTTGTCGTGGTTTGA	58.690	37.500	0.00	0.00	0.00	2.69
2673	3868	5.621197	TCCATAAATCTTGTCGTGGTTTG	57.379	39.130	0.00	0.00	0.00	2.93
2674	3869	5.334569	CGTTCCATAAATCTTGTCGTGGTTT	60.335	40.000	0.00	0.00	0.00	3.27
2675	3870	4.153475	CGTTCCATAAATCTTGTCGTGGTT	59.847	41.667	0.00	0.00	0.00	3.67
2676	3871	3.682858	CGTTCCATAAATCTTGTCGTGGT	59.317	43.478	0.00	0.00	0.00	4.16
2677	3872	3.930229	TCGTTCCATAAATCTTGTCGTGG	59.070	43.478	0.00	0.00	0.00	4.94
2678	3873	4.032900	CCTCGTTCCATAAATCTTGTCGTG	59.967	45.833	0.00	0.00	0.00	4.35
2679	3874	4.181578	CCTCGTTCCATAAATCTTGTCGT	58.818	43.478	0.00	0.00	0.00	4.34
2680	3875	3.555956	CCCTCGTTCCATAAATCTTGTCG	59.444	47.826	0.00	0.00	0.00	4.35
2688	3883	3.833650	TGTGTACTCCCTCGTTCCATAAA	59.166	43.478	0.00	0.00	0.00	1.40
2720	3915	6.606796	ACAGATGTGATACAAAAATATGGCCA	59.393	34.615	8.56	8.56	0.00	5.36
2730	3925	9.264719	CTCTGCATATAACAGATGTGATACAAA	57.735	33.333	8.75	0.00	42.99	2.83
2736	3931	8.427276	AGAAATCTCTGCATATAACAGATGTGA	58.573	33.333	8.75	4.82	42.99	3.58
2740	3935	8.591940	TGCTAGAAATCTCTGCATATAACAGAT	58.408	33.333	8.75	0.00	42.99	2.90
2751	3946	4.751098	CAGGAGAATGCTAGAAATCTCTGC	59.249	45.833	14.41	3.98	29.87	4.26
2779	3974	8.672823	ACATACATATATGCTGCATAAGGATG	57.327	34.615	26.59	26.59	41.83	3.51
2807	4002	5.885912	GGATCCTCAAACTTTATTGCCAGTA	59.114	40.000	3.84	0.00	0.00	2.74
2808	4003	4.706962	GGATCCTCAAACTTTATTGCCAGT	59.293	41.667	3.84	0.00	0.00	4.00
2854	4049	2.027653	TCGCAGGAATGTGGTCAATACA	60.028	45.455	0.00	0.00	0.00	2.29
2859	4054	2.198827	ATTTCGCAGGAATGTGGTCA	57.801	45.000	0.00	0.00	30.88	4.02
2862	4057	2.415893	GGACAATTTCGCAGGAATGTGG	60.416	50.000	0.00	0.00	28.22	4.17

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.