Multiple sequence alignment - TraesCS2D01G371300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G371300 chr2D 100.000 2453 0 0 1 2453 475097541 475095089 0.000000e+00 4530
1 TraesCS2D01G371300 chr2D 100.000 2291 0 0 2662 4952 475094880 475092590 0.000000e+00 4231
2 TraesCS2D01G371300 chr2B 89.754 2274 120 50 232 2434 556206674 556204443 0.000000e+00 2804
3 TraesCS2D01G371300 chr2B 92.954 738 38 5 3747 4476 556202752 556202021 0.000000e+00 1062
4 TraesCS2D01G371300 chr2B 91.304 621 39 8 2900 3518 556203828 556203221 0.000000e+00 833
5 TraesCS2D01G371300 chr2B 93.274 223 13 2 3527 3748 556203064 556202843 1.330000e-85 327
6 TraesCS2D01G371300 chr2B 87.435 191 6 10 1 174 556206889 556206700 2.340000e-48 204
7 TraesCS2D01G371300 chr2B 98.387 62 1 0 4588 4649 556201902 556201841 5.240000e-20 110
8 TraesCS2D01G371300 chr2A 91.035 1807 96 26 2679 4476 617656507 617654758 0.000000e+00 2379
9 TraesCS2D01G371300 chr2A 87.832 1545 101 47 1 1511 617658927 617657436 0.000000e+00 1731
10 TraesCS2D01G371300 chr2A 87.554 932 67 23 1541 2432 617657440 617656518 0.000000e+00 1033
11 TraesCS2D01G371300 chr2A 84.861 251 15 11 4700 4949 617648774 617648546 1.070000e-56 231
12 TraesCS2D01G371300 chr2A 90.805 87 5 2 4504 4588 654916403 654916488 4.050000e-21 113
13 TraesCS2D01G371300 chr3D 78.241 432 52 19 1748 2166 217577575 217577977 6.410000e-59 239
14 TraesCS2D01G371300 chr3B 77.778 432 50 19 1748 2166 325868580 325868182 1.790000e-54 224
15 TraesCS2D01G371300 chr3B 89.362 94 4 3 4509 4596 256200656 256200749 4.050000e-21 113
16 TraesCS2D01G371300 chr3A 77.546 432 55 22 1748 2166 291822899 291822497 6.450000e-54 222
17 TraesCS2D01G371300 chr6D 74.636 481 82 24 1852 2311 427061444 427061905 5.090000e-40 176
18 TraesCS2D01G371300 chr7D 74.444 360 69 18 2005 2352 351663405 351663057 3.110000e-27 134
19 TraesCS2D01G371300 chr1B 91.089 101 6 3 4504 4603 453517009 453517107 3.110000e-27 134
20 TraesCS2D01G371300 chr1B 95.000 80 2 1 4511 4588 443529853 443529774 1.870000e-24 124
21 TraesCS2D01G371300 chr1B 74.352 347 55 19 2024 2352 666939960 666939630 3.130000e-22 117
22 TraesCS2D01G371300 chr7B 93.902 82 3 1 4511 4590 566634964 566635045 6.730000e-24 122
23 TraesCS2D01G371300 chr5B 74.114 367 61 19 2005 2352 361490230 361490581 2.420000e-23 121
24 TraesCS2D01G371300 chr4D 94.872 78 2 1 4511 4588 21876134 21876059 2.420000e-23 121
25 TraesCS2D01G371300 chr4D 74.054 370 58 20 2005 2352 81335715 81336068 3.130000e-22 117
26 TraesCS2D01G371300 chr1A 93.902 82 2 1 4511 4589 238681368 238681287 2.420000e-23 121
27 TraesCS2D01G371300 chr1A 73.938 353 58 19 2019 2352 375612510 375612173 1.460000e-20 111
28 TraesCS2D01G371300 chr4B 73.973 365 63 17 2005 2352 145515758 145515409 8.710000e-23 119
29 TraesCS2D01G371300 chr4A 91.111 90 5 2 4510 4598 88424565 88424478 8.710000e-23 119
30 TraesCS2D01G371300 chr4A 93.878 49 3 0 1735 1783 104124187 104124139 1.910000e-09 75
31 TraesCS2D01G371300 chr7A 90.805 87 5 2 4500 4586 704269926 704270009 4.050000e-21 113
32 TraesCS2D01G371300 chr7A 90.909 55 5 0 1729 1783 37005805 37005859 1.910000e-09 75
33 TraesCS2D01G371300 chr6A 93.878 49 3 0 1735 1783 567091504 567091456 1.910000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G371300 chr2D 475092590 475097541 4951 True 4380.500000 4530 100.000000 1 4952 2 chr2D.!!$R1 4951
1 TraesCS2D01G371300 chr2B 556201841 556206889 5048 True 890.000000 2804 92.184667 1 4649 6 chr2B.!!$R1 4648
2 TraesCS2D01G371300 chr2A 617654758 617658927 4169 True 1714.333333 2379 88.807000 1 4476 3 chr2A.!!$R2 4475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 678 0.246635 TCCCACTCTTCGCTTACTGC 59.753 55.0 0.00 0.0 38.57 4.40 F
631 679 0.247736 CCCACTCTTCGCTTACTGCT 59.752 55.0 0.00 0.0 40.11 4.24 F
667 715 0.319900 GGTGCGTGCAGAGAAGAAGA 60.320 55.0 0.00 0.0 0.00 2.87 F
1318 1386 0.832983 TTTTGCCTGGATTGCTGGCT 60.833 50.0 22.97 0.0 46.23 4.75 F
2437 2561 0.555769 AATGGCCCAATCGGTATGGT 59.444 50.0 0.00 0.0 36.14 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 1764 0.034616 AGCTGAGCACTGAGGTGAAC 59.965 55.0 7.39 0.0 45.61 3.18 R
1701 1808 0.243636 CCTGCAACCGAAAATCCCAC 59.756 55.0 0.00 0.0 0.00 4.61 R
2364 2488 0.304705 CTTCGCAACAGCTCGTTTGT 59.695 50.0 0.00 0.0 34.86 2.83 R
2667 3002 0.108138 CTCTCTAGGCGGTGTTTGGG 60.108 60.0 0.00 0.0 0.00 4.12 R
4013 4615 0.036388 GGCAGAATCCTGGTCGTTGA 60.036 55.0 0.00 0.0 40.72 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 66 1.152139 CTCATCTCCCTCCCCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
50 68 3.462501 ATCTCCCTCCCCCTCCCC 61.463 72.222 0.00 0.00 0.00 4.81
72 101 2.936498 CCTTCTCTCTCTCTGACGACTC 59.064 54.545 0.00 0.00 0.00 3.36
171 200 4.994217 CAGTTGAGTCCTTCTTCTTCTTCC 59.006 45.833 0.00 0.00 0.00 3.46
172 201 4.904853 AGTTGAGTCCTTCTTCTTCTTCCT 59.095 41.667 0.00 0.00 0.00 3.36
173 202 5.011635 AGTTGAGTCCTTCTTCTTCTTCCTC 59.988 44.000 0.00 0.00 0.00 3.71
174 203 3.835395 TGAGTCCTTCTTCTTCTTCCTCC 59.165 47.826 0.00 0.00 0.00 4.30
175 204 4.093743 GAGTCCTTCTTCTTCTTCCTCCT 58.906 47.826 0.00 0.00 0.00 3.69
176 205 4.093743 AGTCCTTCTTCTTCTTCCTCCTC 58.906 47.826 0.00 0.00 0.00 3.71
177 206 3.196901 GTCCTTCTTCTTCTTCCTCCTCC 59.803 52.174 0.00 0.00 0.00 4.30
178 207 3.078305 TCCTTCTTCTTCTTCCTCCTCCT 59.922 47.826 0.00 0.00 0.00 3.69
179 208 3.450817 CCTTCTTCTTCTTCCTCCTCCTC 59.549 52.174 0.00 0.00 0.00 3.71
180 209 3.108847 TCTTCTTCTTCCTCCTCCTCC 57.891 52.381 0.00 0.00 0.00 4.30
195 224 3.450817 CCTCCTCCTCTTCTTCTTCTTCC 59.549 52.174 0.00 0.00 0.00 3.46
202 231 4.322650 CCTCTTCTTCTTCTTCCTCCTGTG 60.323 50.000 0.00 0.00 0.00 3.66
203 232 4.227197 TCTTCTTCTTCTTCCTCCTGTGT 58.773 43.478 0.00 0.00 0.00 3.72
204 233 4.656112 TCTTCTTCTTCTTCCTCCTGTGTT 59.344 41.667 0.00 0.00 0.00 3.32
206 235 5.373812 TCTTCTTCTTCCTCCTGTGTTTT 57.626 39.130 0.00 0.00 0.00 2.43
208 237 3.728845 TCTTCTTCCTCCTGTGTTTTCG 58.271 45.455 0.00 0.00 0.00 3.46
209 238 3.134081 TCTTCTTCCTCCTGTGTTTTCGT 59.866 43.478 0.00 0.00 0.00 3.85
212 241 5.026038 TCTTCCTCCTGTGTTTTCGTTTA 57.974 39.130 0.00 0.00 0.00 2.01
214 243 3.735591 TCCTCCTGTGTTTTCGTTTAGG 58.264 45.455 0.00 0.00 0.00 2.69
216 245 3.497262 CCTCCTGTGTTTTCGTTTAGGAC 59.503 47.826 0.00 0.00 31.50 3.85
217 246 4.377897 CTCCTGTGTTTTCGTTTAGGACT 58.622 43.478 0.00 0.00 31.50 3.85
218 247 4.124238 TCCTGTGTTTTCGTTTAGGACTG 58.876 43.478 0.00 0.00 29.86 3.51
219 248 3.875134 CCTGTGTTTTCGTTTAGGACTGT 59.125 43.478 0.00 0.00 0.00 3.55
220 249 5.051816 CCTGTGTTTTCGTTTAGGACTGTA 58.948 41.667 0.00 0.00 0.00 2.74
221 250 5.050567 CCTGTGTTTTCGTTTAGGACTGTAC 60.051 44.000 0.00 0.00 0.00 2.90
222 251 4.810491 TGTGTTTTCGTTTAGGACTGTACC 59.190 41.667 0.00 0.00 0.00 3.34
223 252 5.052481 GTGTTTTCGTTTAGGACTGTACCT 58.948 41.667 0.00 0.00 43.32 3.08
224 253 5.050567 GTGTTTTCGTTTAGGACTGTACCTG 60.051 44.000 8.47 0.00 40.81 4.00
225 254 3.308438 TTCGTTTAGGACTGTACCTGC 57.692 47.619 8.47 0.00 40.81 4.85
226 255 1.200716 TCGTTTAGGACTGTACCTGCG 59.799 52.381 8.47 9.54 40.81 5.18
227 256 1.734707 CGTTTAGGACTGTACCTGCGG 60.735 57.143 8.47 0.00 40.81 5.69
228 257 1.274447 GTTTAGGACTGTACCTGCGGT 59.726 52.381 5.58 5.58 40.81 5.68
229 258 1.636148 TTAGGACTGTACCTGCGGTT 58.364 50.000 5.57 0.00 40.81 4.44
230 259 1.636148 TAGGACTGTACCTGCGGTTT 58.364 50.000 5.57 0.00 40.81 3.27
244 273 2.127383 GTTTGCTTTCGCCGTCGG 60.127 61.111 6.99 6.99 36.13 4.79
302 335 2.069273 CTCAGTTTGTTTCCGCGATCT 58.931 47.619 8.23 0.00 0.00 2.75
310 343 0.802494 TTTCCGCGATCTTTCAAGGC 59.198 50.000 8.23 0.00 0.00 4.35
347 381 1.375551 CCTTTTAATACTGCCGCGGT 58.624 50.000 28.70 9.89 0.00 5.68
392 426 3.876198 CATTGCCCGCCTACGCAC 61.876 66.667 0.00 0.00 38.22 5.34
461 502 4.693566 CCGTACTACTGCCTTTTCATTTGA 59.306 41.667 0.00 0.00 0.00 2.69
462 503 5.163854 CCGTACTACTGCCTTTTCATTTGAG 60.164 44.000 0.00 0.00 0.00 3.02
609 657 2.050836 TTGCTTGCTCCCCTTCGTCA 62.051 55.000 0.00 0.00 0.00 4.35
618 666 1.592223 CCCTTCGTCACTCCCACTC 59.408 63.158 0.00 0.00 0.00 3.51
629 677 1.546476 ACTCCCACTCTTCGCTTACTG 59.454 52.381 0.00 0.00 0.00 2.74
630 678 0.246635 TCCCACTCTTCGCTTACTGC 59.753 55.000 0.00 0.00 38.57 4.40
631 679 0.247736 CCCACTCTTCGCTTACTGCT 59.752 55.000 0.00 0.00 40.11 4.24
667 715 0.319900 GGTGCGTGCAGAGAAGAAGA 60.320 55.000 0.00 0.00 0.00 2.87
668 716 1.502231 GTGCGTGCAGAGAAGAAGAA 58.498 50.000 0.00 0.00 0.00 2.52
669 717 1.458827 GTGCGTGCAGAGAAGAAGAAG 59.541 52.381 0.00 0.00 0.00 2.85
670 718 1.341209 TGCGTGCAGAGAAGAAGAAGA 59.659 47.619 0.00 0.00 0.00 2.87
671 719 2.224042 TGCGTGCAGAGAAGAAGAAGAA 60.224 45.455 0.00 0.00 0.00 2.52
672 720 2.411409 GCGTGCAGAGAAGAAGAAGAAG 59.589 50.000 0.00 0.00 0.00 2.85
673 721 3.858877 GCGTGCAGAGAAGAAGAAGAAGA 60.859 47.826 0.00 0.00 0.00 2.87
674 722 4.302455 CGTGCAGAGAAGAAGAAGAAGAA 58.698 43.478 0.00 0.00 0.00 2.52
675 723 4.928615 CGTGCAGAGAAGAAGAAGAAGAAT 59.071 41.667 0.00 0.00 0.00 2.40
679 727 6.014755 TGCAGAGAAGAAGAAGAAGAATCAGA 60.015 38.462 0.00 0.00 0.00 3.27
734 785 1.070786 GTGCGGTCTCAAGGAACCA 59.929 57.895 0.00 0.00 0.00 3.67
757 809 3.120511 CGAAAAGGCCGAGAAGAAAAGAG 60.121 47.826 0.00 0.00 0.00 2.85
778 830 4.698575 AGGATAAAAGGTGCGATCTCTTC 58.301 43.478 0.00 0.00 0.00 2.87
784 836 8.819643 ATAAAAGGTGCGATCTCTTCTTATAC 57.180 34.615 0.00 0.00 0.00 1.47
814 866 6.884295 CCTTTTCTTTTCTTTTGGGGTTCTTT 59.116 34.615 0.00 0.00 0.00 2.52
816 868 6.367374 TTCTTTTCTTTTGGGGTTCTTTGT 57.633 33.333 0.00 0.00 0.00 2.83
835 887 2.432146 TGTTCCATCGAATCCTCTCCAG 59.568 50.000 0.00 0.00 0.00 3.86
837 889 2.752030 TCCATCGAATCCTCTCCAGTT 58.248 47.619 0.00 0.00 0.00 3.16
867 934 2.164422 CGAGCCAGAATTTCTTTTCCCC 59.836 50.000 0.00 0.00 0.00 4.81
882 949 2.670148 CCCCTTTCCCCTCCTGTCG 61.670 68.421 0.00 0.00 0.00 4.35
921 988 5.798910 CAAAGTTGCTTCGATTTGCTTTTT 58.201 33.333 7.02 3.43 0.00 1.94
945 1012 1.469308 TCGCCTCTTCGACTTCTTCTC 59.531 52.381 0.00 0.00 33.02 2.87
952 1019 5.394005 CCTCTTCGACTTCTTCTCATGATGT 60.394 44.000 0.00 0.00 0.00 3.06
987 1054 5.183530 TGCAGGTAGGTAGTTGAGTAGTA 57.816 43.478 0.00 0.00 0.00 1.82
990 1057 6.666546 TGCAGGTAGGTAGTTGAGTAGTATTT 59.333 38.462 0.00 0.00 0.00 1.40
1101 1168 4.790861 GTCGTCTTCGTCCCGGGC 62.791 72.222 18.49 10.58 38.33 6.13
1308 1376 1.474855 CCTTTGGTGGTTTTTGCCTGG 60.475 52.381 0.00 0.00 0.00 4.45
1318 1386 0.832983 TTTTGCCTGGATTGCTGGCT 60.833 50.000 22.97 0.00 46.23 4.75
1386 1457 5.159925 GGAATTTTCTCTCTTTTGCTGCTC 58.840 41.667 0.00 0.00 0.00 4.26
1416 1487 1.699634 TCAAGCACTGCTAACCTCCTT 59.300 47.619 3.33 0.00 38.25 3.36
1435 1506 1.752683 TCAGGCTCTCGAAGACTACC 58.247 55.000 3.13 0.00 43.69 3.18
1441 1512 1.403679 CTCTCGAAGACTACCTGCCAG 59.596 57.143 0.00 0.00 0.00 4.85
1488 1559 2.293122 TGAGTGGTTGCTGAAATTTCGG 59.707 45.455 20.69 20.69 36.64 4.30
1531 1605 8.301002 GGTTTTGTATATACTTTTGTTGCTGGA 58.699 33.333 13.89 0.00 0.00 3.86
1648 1725 1.221840 CAAGGCCGAGGTATGTGCT 59.778 57.895 0.00 0.00 0.00 4.40
1651 1728 2.472909 GGCCGAGGTATGTGCTTGC 61.473 63.158 0.00 0.00 0.00 4.01
1653 1730 1.221840 CCGAGGTATGTGCTTGCCT 59.778 57.895 0.00 0.00 0.00 4.75
1655 1732 1.709147 CGAGGTATGTGCTTGCCTGC 61.709 60.000 0.00 0.00 0.00 4.85
1656 1733 1.379044 AGGTATGTGCTTGCCTGCC 60.379 57.895 0.00 0.00 0.00 4.85
1658 1735 2.438254 TATGTGCTTGCCTGCCCG 60.438 61.111 0.00 0.00 0.00 6.13
1659 1736 3.266686 TATGTGCTTGCCTGCCCGT 62.267 57.895 0.00 0.00 0.00 5.28
1672 1764 1.007387 GCCCGTGCTTTCACCAAAG 60.007 57.895 0.00 0.00 41.92 2.77
1675 1767 1.269051 CCCGTGCTTTCACCAAAGTTC 60.269 52.381 0.00 0.00 41.18 3.01
1687 1789 1.876156 CCAAAGTTCACCTCAGTGCTC 59.124 52.381 0.00 0.00 44.16 4.26
1701 1808 1.209019 AGTGCTCAGCTCTAACATGGG 59.791 52.381 0.00 0.00 30.33 4.00
1830 1937 2.791501 TTCCAAGGGCTTACGGCGAC 62.792 60.000 16.62 0.00 42.94 5.19
1906 2013 1.748879 GGCATGGCTCGGCAAGTTA 60.749 57.895 12.86 0.00 0.00 2.24
1909 2016 1.532868 GCATGGCTCGGCAAGTTATAG 59.467 52.381 0.00 0.00 0.00 1.31
1920 2027 4.335315 CGGCAAGTTATAGGCATTGAGAAA 59.665 41.667 0.00 0.00 0.00 2.52
1940 2047 4.422073 AATGGAGAATGTTCATCGCCTA 57.578 40.909 0.00 0.00 37.61 3.93
2035 2144 2.814410 CAGACGTGCAACTGTCGAT 58.186 52.632 0.00 0.00 42.36 3.59
2083 2192 1.724623 GACTGCGCAATTCGACAAGTA 59.275 47.619 13.05 0.00 41.67 2.24
2151 2260 5.801012 GCCTCACGAGATAACTTCAATTTC 58.199 41.667 0.00 0.00 0.00 2.17
2152 2261 5.582665 GCCTCACGAGATAACTTCAATTTCT 59.417 40.000 0.00 0.00 0.00 2.52
2276 2399 2.154462 GCAACCTCAAAGCTCTTAGCA 58.846 47.619 1.22 0.00 45.56 3.49
2343 2467 3.855255 TCTGAATTCTGGTGTCCAACA 57.145 42.857 11.89 0.00 30.80 3.33
2364 2488 4.145807 CACCCAAACACCCTACAACAATA 58.854 43.478 0.00 0.00 0.00 1.90
2399 2523 2.639751 CGAAGAAGACCGCTGTTTTTG 58.360 47.619 0.00 0.00 0.00 2.44
2429 2553 4.270245 TGAAGTTTGAAATGGCCCAATC 57.730 40.909 0.00 0.00 0.00 2.67
2434 2558 2.746279 TGAAATGGCCCAATCGGTAT 57.254 45.000 0.00 0.00 0.00 2.73
2435 2559 2.305928 TGAAATGGCCCAATCGGTATG 58.694 47.619 0.00 0.00 0.00 2.39
2436 2560 1.613437 GAAATGGCCCAATCGGTATGG 59.387 52.381 0.00 0.00 37.71 2.74
2437 2561 0.555769 AATGGCCCAATCGGTATGGT 59.444 50.000 0.00 0.00 36.14 3.55
2438 2562 1.440618 ATGGCCCAATCGGTATGGTA 58.559 50.000 0.00 0.00 36.14 3.25
2441 2565 1.349688 GGCCCAATCGGTATGGTATCA 59.650 52.381 0.00 0.00 36.14 2.15
2442 2566 2.423577 GCCCAATCGGTATGGTATCAC 58.576 52.381 0.00 0.00 36.14 3.06
2444 2568 3.664107 CCCAATCGGTATGGTATCACTG 58.336 50.000 0.00 0.00 36.14 3.66
2445 2569 3.557054 CCCAATCGGTATGGTATCACTGG 60.557 52.174 0.00 0.00 36.14 4.00
2446 2570 3.323691 CCAATCGGTATGGTATCACTGGA 59.676 47.826 0.00 0.00 33.08 3.86
2449 2573 4.665833 TCGGTATGGTATCACTGGAAAG 57.334 45.455 0.00 0.00 0.00 2.62
2450 2574 3.386726 TCGGTATGGTATCACTGGAAAGG 59.613 47.826 0.00 0.00 0.00 3.11
2451 2575 3.494398 CGGTATGGTATCACTGGAAAGGG 60.494 52.174 0.00 0.00 0.00 3.95
2696 3037 1.745653 CGCCTAGAGAGTGATGTGTGA 59.254 52.381 0.00 0.00 0.00 3.58
2697 3038 2.223456 CGCCTAGAGAGTGATGTGTGAG 60.223 54.545 0.00 0.00 0.00 3.51
2704 3045 4.894705 AGAGAGTGATGTGTGAGCTATCAT 59.105 41.667 0.00 0.00 37.87 2.45
2806 3151 8.803397 AAAATGAAACCTAGTACTACCATTCC 57.197 34.615 0.00 0.00 0.00 3.01
2807 3152 7.750947 AATGAAACCTAGTACTACCATTCCT 57.249 36.000 0.00 0.00 0.00 3.36
2842 3187 9.999660 TCAGATACAGTAGTCATAACCTAGTAG 57.000 37.037 0.00 0.00 0.00 2.57
2843 3188 9.781633 CAGATACAGTAGTCATAACCTAGTAGT 57.218 37.037 0.00 0.00 0.00 2.73
2847 3192 8.100135 ACAGTAGTCATAACCTAGTAGTACCT 57.900 38.462 0.00 0.00 0.00 3.08
2889 3236 2.586425 CAACCTGTCTGTCCCATTTGT 58.414 47.619 0.00 0.00 0.00 2.83
2891 3238 3.312736 ACCTGTCTGTCCCATTTGTTT 57.687 42.857 0.00 0.00 0.00 2.83
2892 3239 3.642141 ACCTGTCTGTCCCATTTGTTTT 58.358 40.909 0.00 0.00 0.00 2.43
2893 3240 4.030216 ACCTGTCTGTCCCATTTGTTTTT 58.970 39.130 0.00 0.00 0.00 1.94
2913 3260 3.940209 TTTTAGCTGCTGTCCCATTTG 57.060 42.857 13.43 0.00 0.00 2.32
2914 3261 2.877097 TTAGCTGCTGTCCCATTTGA 57.123 45.000 13.43 0.00 0.00 2.69
2915 3262 3.370840 TTAGCTGCTGTCCCATTTGAT 57.629 42.857 13.43 0.00 0.00 2.57
2916 3263 2.226962 AGCTGCTGTCCCATTTGATT 57.773 45.000 0.00 0.00 0.00 2.57
3001 3348 2.017752 GCTTGGGCTAGCAATCGAC 58.982 57.895 18.24 0.00 40.89 4.20
3052 3399 0.654683 GCTTAGCTTGCGAGATGGTG 59.345 55.000 4.70 0.00 0.00 4.17
3088 3435 2.419851 GGTTCAGGAGAGCATTCCAGAG 60.420 54.545 8.95 0.00 39.84 3.35
3103 3450 1.345741 CCAGAGCTTCCTGTGTCTGAA 59.654 52.381 2.09 0.00 39.04 3.02
3229 3576 8.140677 TGTCCAATTTTCAAATCACAAATGTC 57.859 30.769 0.00 0.00 0.00 3.06
3232 3579 7.772292 TCCAATTTTCAAATCACAAATGTCCAA 59.228 29.630 0.00 0.00 0.00 3.53
3248 3595 3.007506 TGTCCAAGCCGAGTTCAAATAGA 59.992 43.478 0.00 0.00 0.00 1.98
3249 3596 3.371285 GTCCAAGCCGAGTTCAAATAGAC 59.629 47.826 0.00 0.00 0.00 2.59
3250 3597 3.007506 TCCAAGCCGAGTTCAAATAGACA 59.992 43.478 0.00 0.00 0.00 3.41
3251 3598 3.372206 CCAAGCCGAGTTCAAATAGACAG 59.628 47.826 0.00 0.00 0.00 3.51
3252 3599 3.963428 AGCCGAGTTCAAATAGACAGT 57.037 42.857 0.00 0.00 0.00 3.55
3253 3600 3.589988 AGCCGAGTTCAAATAGACAGTG 58.410 45.455 0.00 0.00 0.00 3.66
3254 3601 3.006967 AGCCGAGTTCAAATAGACAGTGT 59.993 43.478 0.00 0.00 0.00 3.55
3255 3602 3.368236 GCCGAGTTCAAATAGACAGTGTC 59.632 47.826 15.78 15.78 0.00 3.67
3256 3603 4.810790 CCGAGTTCAAATAGACAGTGTCT 58.189 43.478 27.98 27.98 45.54 3.41
3257 3604 5.230942 CCGAGTTCAAATAGACAGTGTCTT 58.769 41.667 29.84 15.20 40.28 3.01
3263 3610 7.987458 AGTTCAAATAGACAGTGTCTTCTTCAA 59.013 33.333 29.84 13.88 40.28 2.69
3264 3611 7.953158 TCAAATAGACAGTGTCTTCTTCAAG 57.047 36.000 29.84 15.97 40.28 3.02
3266 3613 7.987458 TCAAATAGACAGTGTCTTCTTCAAGTT 59.013 33.333 29.84 13.82 40.28 2.66
3268 3615 5.091261 AGACAGTGTCTTCTTCAAGTTGT 57.909 39.130 20.34 0.00 40.28 3.32
3288 3635 5.666969 TGTATATGTTTCGCCTGCAATAC 57.333 39.130 0.00 0.00 0.00 1.89
3298 3645 2.291465 CGCCTGCAATACGGTACTAGTA 59.709 50.000 0.00 0.00 0.00 1.82
3313 3661 9.189156 ACGGTACTAGTATACAACCATCTAAAA 57.811 33.333 5.75 0.00 0.00 1.52
3431 3779 2.495155 TAGCAGCATTGGAAGCTTCA 57.505 45.000 27.02 8.90 41.14 3.02
3466 3814 0.037882 GAAAGCAAAAGGGCCTCTGC 60.038 55.000 25.60 25.60 34.96 4.26
3515 4022 6.374565 TCTAGGTAAGACATTCGCTTCTAC 57.625 41.667 0.00 0.00 0.00 2.59
3516 4023 6.120905 TCTAGGTAAGACATTCGCTTCTACT 58.879 40.000 0.00 0.00 0.00 2.57
3517 4024 5.251601 AGGTAAGACATTCGCTTCTACTC 57.748 43.478 0.00 0.00 0.00 2.59
3518 4025 4.705507 AGGTAAGACATTCGCTTCTACTCA 59.294 41.667 0.00 0.00 0.00 3.41
3519 4026 4.799428 GGTAAGACATTCGCTTCTACTCAC 59.201 45.833 0.00 0.00 0.00 3.51
3520 4027 4.521130 AAGACATTCGCTTCTACTCACA 57.479 40.909 0.00 0.00 0.00 3.58
3521 4028 4.521130 AGACATTCGCTTCTACTCACAA 57.479 40.909 0.00 0.00 0.00 3.33
3522 4029 4.883083 AGACATTCGCTTCTACTCACAAA 58.117 39.130 0.00 0.00 0.00 2.83
3523 4030 5.482908 AGACATTCGCTTCTACTCACAAAT 58.517 37.500 0.00 0.00 0.00 2.32
3524 4031 5.349817 AGACATTCGCTTCTACTCACAAATG 59.650 40.000 0.00 0.00 0.00 2.32
3525 4032 4.997395 ACATTCGCTTCTACTCACAAATGT 59.003 37.500 0.00 0.00 32.77 2.71
3570 4077 9.458374 ACCAAGTGTGTTTTCTTAATATTTTCG 57.542 29.630 0.00 0.00 0.00 3.46
3572 4079 9.180678 CAAGTGTGTTTTCTTAATATTTTCGCT 57.819 29.630 0.00 0.00 0.00 4.93
3616 4125 6.860023 AGAAAGAAGAATGCAAAATGAAGACG 59.140 34.615 0.00 0.00 0.00 4.18
3719 4228 0.326618 AGGTCCGGATCAACCAGGAT 60.327 55.000 19.03 0.00 40.97 3.24
3761 4362 5.424121 AATGAACTAATGATTAGCGGCAC 57.576 39.130 11.92 1.16 36.71 5.01
3823 4424 0.110486 ACTGACGGGCCATCTGTTTT 59.890 50.000 6.29 0.00 34.56 2.43
3900 4501 3.006537 TGGCACTAACACCTGAAGACTAC 59.993 47.826 0.00 0.00 0.00 2.73
4013 4615 1.472376 GCTCTGGCGCTACTGAGAAAT 60.472 52.381 19.61 0.00 38.32 2.17
4036 4638 0.107508 CGACCAGGATTCTGCCATGT 60.108 55.000 0.00 0.00 39.61 3.21
4077 4679 5.390461 GCAAACGCAGTGTACAAAGATATGA 60.390 40.000 0.00 0.00 45.00 2.15
4177 4782 6.656693 ACAGTTAAATCTTCTCTGACAATGGG 59.343 38.462 0.00 0.00 0.00 4.00
4245 4854 1.617804 CCAATGAGTGCCATGGTTCCT 60.618 52.381 14.67 6.63 35.24 3.36
4288 4897 2.753319 GGCTTAGTTTTGGGGCCAA 58.247 52.632 4.39 0.00 42.08 4.52
4296 4905 0.114954 TTTTGGGGCCAATCTGAGCT 59.885 50.000 4.39 0.00 35.70 4.09
4301 4910 2.234143 GGGGCCAATCTGAGCTTATTC 58.766 52.381 4.39 0.00 0.00 1.75
4329 4938 5.435820 GTAAATTTACCAAACACGGTCCA 57.564 39.130 16.14 0.00 40.67 4.02
4383 4994 6.002082 AGCCAGGACGAAATTTAAACTACTT 58.998 36.000 0.00 0.00 0.00 2.24
4384 4995 6.148976 AGCCAGGACGAAATTTAAACTACTTC 59.851 38.462 0.00 0.00 0.00 3.01
4476 5087 8.993121 ACATTTTGTCATTAGTCTACTCAACTG 58.007 33.333 0.00 0.00 0.00 3.16
4477 5088 9.208022 CATTTTGTCATTAGTCTACTCAACTGA 57.792 33.333 0.00 0.00 0.00 3.41
4489 5183 2.158813 ACTCAACTGATTGGGAACACGT 60.159 45.455 0.00 0.00 38.77 4.49
4491 5185 2.616376 TCAACTGATTGGGAACACGTTG 59.384 45.455 0.00 0.00 42.67 4.10
4494 5188 0.665835 TGATTGGGAACACGTTGCAC 59.334 50.000 3.79 0.00 42.67 4.57
4510 5204 0.033366 GCACGCCCCAAGAAAACAAT 59.967 50.000 0.00 0.00 0.00 2.71
4511 5205 1.271102 GCACGCCCCAAGAAAACAATA 59.729 47.619 0.00 0.00 0.00 1.90
4512 5206 2.924880 GCACGCCCCAAGAAAACAATAC 60.925 50.000 0.00 0.00 0.00 1.89
4513 5207 2.556622 CACGCCCCAAGAAAACAATACT 59.443 45.455 0.00 0.00 0.00 2.12
4514 5208 2.817844 ACGCCCCAAGAAAACAATACTC 59.182 45.455 0.00 0.00 0.00 2.59
4515 5209 2.163613 CGCCCCAAGAAAACAATACTCC 59.836 50.000 0.00 0.00 0.00 3.85
4516 5210 2.496070 GCCCCAAGAAAACAATACTCCC 59.504 50.000 0.00 0.00 0.00 4.30
4517 5211 3.817931 GCCCCAAGAAAACAATACTCCCT 60.818 47.826 0.00 0.00 0.00 4.20
4518 5212 4.017126 CCCCAAGAAAACAATACTCCCTC 58.983 47.826 0.00 0.00 0.00 4.30
4519 5213 4.263949 CCCCAAGAAAACAATACTCCCTCT 60.264 45.833 0.00 0.00 0.00 3.69
4520 5214 4.702131 CCCAAGAAAACAATACTCCCTCTG 59.298 45.833 0.00 0.00 0.00 3.35
4521 5215 5.316987 CCAAGAAAACAATACTCCCTCTGT 58.683 41.667 0.00 0.00 0.00 3.41
4522 5216 6.472887 CCAAGAAAACAATACTCCCTCTGTA 58.527 40.000 0.00 0.00 0.00 2.74
4523 5217 6.940298 CCAAGAAAACAATACTCCCTCTGTAA 59.060 38.462 0.00 0.00 0.00 2.41
4524 5218 7.447238 CCAAGAAAACAATACTCCCTCTGTAAA 59.553 37.037 0.00 0.00 0.00 2.01
4525 5219 8.507249 CAAGAAAACAATACTCCCTCTGTAAAG 58.493 37.037 0.00 0.00 0.00 1.85
4526 5220 7.974504 AGAAAACAATACTCCCTCTGTAAAGA 58.025 34.615 0.00 0.00 0.00 2.52
4527 5221 8.437575 AGAAAACAATACTCCCTCTGTAAAGAA 58.562 33.333 0.00 0.00 0.00 2.52
4528 5222 8.990163 AAAACAATACTCCCTCTGTAAAGAAA 57.010 30.769 0.00 0.00 0.00 2.52
4529 5223 9.588096 AAAACAATACTCCCTCTGTAAAGAAAT 57.412 29.630 0.00 0.00 0.00 2.17
4537 5231 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
4538 5232 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
4539 5233 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
4540 5234 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
4558 5252 9.998106 AAGAGTGTTTAGCTTTAGTGATCTAAA 57.002 29.630 0.00 0.00 41.87 1.85
4559 5253 9.425577 AGAGTGTTTAGCTTTAGTGATCTAAAC 57.574 33.333 13.65 13.65 45.25 2.01
4564 5258 9.425577 GTTTAGCTTTAGTGATCTAAACACTCT 57.574 33.333 14.95 0.00 45.58 3.24
4565 5259 9.998106 TTTAGCTTTAGTGATCTAAACACTCTT 57.002 29.630 0.00 0.00 45.58 2.85
4583 5277 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
4584 5278 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
4585 5279 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
4586 5280 9.495382 ACTCTTATATTTCTTTACAGAGGGAGT 57.505 33.333 0.00 0.00 32.21 3.85
4617 5311 3.070159 GCTACCAGCTACAAGATCCATCA 59.930 47.826 0.00 0.00 38.45 3.07
4673 5367 9.853555 TTGTACAATGGATTAACAAAGCTATTG 57.146 29.630 3.59 9.85 0.00 1.90
4674 5368 8.465999 TGTACAATGGATTAACAAAGCTATTGG 58.534 33.333 14.19 1.21 0.00 3.16
4675 5369 7.716799 ACAATGGATTAACAAAGCTATTGGA 57.283 32.000 14.19 0.00 0.00 3.53
4676 5370 8.133024 ACAATGGATTAACAAAGCTATTGGAA 57.867 30.769 14.19 6.96 0.00 3.53
4677 5371 8.761689 ACAATGGATTAACAAAGCTATTGGAAT 58.238 29.630 14.19 10.16 0.00 3.01
4678 5372 9.252962 CAATGGATTAACAAAGCTATTGGAATC 57.747 33.333 17.97 17.97 0.00 2.52
4679 5373 7.026631 TGGATTAACAAAGCTATTGGAATCG 57.973 36.000 18.65 0.00 31.87 3.34
4680 5374 6.826231 TGGATTAACAAAGCTATTGGAATCGA 59.174 34.615 18.65 15.84 31.87 3.59
4681 5375 7.132863 GGATTAACAAAGCTATTGGAATCGAC 58.867 38.462 18.65 10.96 31.87 4.20
4682 5376 4.965119 AACAAAGCTATTGGAATCGACC 57.035 40.909 11.59 0.00 0.00 4.79
4683 5377 3.950397 ACAAAGCTATTGGAATCGACCA 58.050 40.909 11.59 0.00 38.24 4.02
4684 5378 3.941483 ACAAAGCTATTGGAATCGACCAG 59.059 43.478 11.59 0.00 41.19 4.00
4685 5379 2.246719 AGCTATTGGAATCGACCAGC 57.753 50.000 0.00 0.00 41.19 4.85
4686 5380 1.202698 AGCTATTGGAATCGACCAGCC 60.203 52.381 0.00 0.00 41.19 4.85
4687 5381 1.475034 GCTATTGGAATCGACCAGCCA 60.475 52.381 0.00 0.00 41.19 4.75
4688 5382 2.811873 GCTATTGGAATCGACCAGCCAT 60.812 50.000 0.00 0.00 41.19 4.40
4689 5383 1.972872 ATTGGAATCGACCAGCCATC 58.027 50.000 0.00 0.00 41.19 3.51
4690 5384 0.911769 TTGGAATCGACCAGCCATCT 59.088 50.000 0.00 0.00 41.19 2.90
4691 5385 0.911769 TGGAATCGACCAGCCATCTT 59.088 50.000 0.00 0.00 34.77 2.40
4692 5386 1.134401 TGGAATCGACCAGCCATCTTC 60.134 52.381 0.00 0.00 34.77 2.87
4693 5387 1.587547 GAATCGACCAGCCATCTTCC 58.412 55.000 0.00 0.00 0.00 3.46
4694 5388 0.911769 AATCGACCAGCCATCTTCCA 59.088 50.000 0.00 0.00 0.00 3.53
4695 5389 0.911769 ATCGACCAGCCATCTTCCAA 59.088 50.000 0.00 0.00 0.00 3.53
4696 5390 0.690192 TCGACCAGCCATCTTCCAAA 59.310 50.000 0.00 0.00 0.00 3.28
4697 5391 1.281867 TCGACCAGCCATCTTCCAAAT 59.718 47.619 0.00 0.00 0.00 2.32
4698 5392 2.094675 CGACCAGCCATCTTCCAAATT 58.905 47.619 0.00 0.00 0.00 1.82
4699 5393 2.159338 CGACCAGCCATCTTCCAAATTG 60.159 50.000 0.00 0.00 0.00 2.32
4700 5394 2.827921 GACCAGCCATCTTCCAAATTGT 59.172 45.455 0.00 0.00 0.00 2.71
4701 5395 4.016444 GACCAGCCATCTTCCAAATTGTA 58.984 43.478 0.00 0.00 0.00 2.41
4702 5396 4.613437 ACCAGCCATCTTCCAAATTGTAT 58.387 39.130 0.00 0.00 0.00 2.29
4703 5397 5.765510 ACCAGCCATCTTCCAAATTGTATA 58.234 37.500 0.00 0.00 0.00 1.47
4704 5398 5.594317 ACCAGCCATCTTCCAAATTGTATAC 59.406 40.000 0.00 0.00 0.00 1.47
4705 5399 5.829924 CCAGCCATCTTCCAAATTGTATACT 59.170 40.000 4.17 0.00 0.00 2.12
4706 5400 6.016777 CCAGCCATCTTCCAAATTGTATACTC 60.017 42.308 4.17 0.00 0.00 2.59
4707 5401 6.543465 CAGCCATCTTCCAAATTGTATACTCA 59.457 38.462 4.17 0.00 0.00 3.41
4708 5402 7.067372 CAGCCATCTTCCAAATTGTATACTCAA 59.933 37.037 4.17 0.00 0.00 3.02
4709 5403 7.615365 AGCCATCTTCCAAATTGTATACTCAAA 59.385 33.333 4.17 0.00 0.00 2.69
4710 5404 7.917505 GCCATCTTCCAAATTGTATACTCAAAG 59.082 37.037 4.17 0.00 0.00 2.77
4711 5405 9.177608 CCATCTTCCAAATTGTATACTCAAAGA 57.822 33.333 4.17 4.64 0.00 2.52
4713 5407 8.268850 TCTTCCAAATTGTATACTCAAAGAGC 57.731 34.615 4.17 0.00 32.04 4.09
4714 5408 7.882791 TCTTCCAAATTGTATACTCAAAGAGCA 59.117 33.333 4.17 0.00 32.04 4.26
4715 5409 7.615582 TCCAAATTGTATACTCAAAGAGCAG 57.384 36.000 4.17 0.00 32.04 4.24
4716 5410 6.599244 TCCAAATTGTATACTCAAAGAGCAGG 59.401 38.462 4.17 0.00 32.04 4.85
4717 5411 6.261118 CAAATTGTATACTCAAAGAGCAGGC 58.739 40.000 4.17 0.00 32.04 4.85
4718 5412 4.826274 TTGTATACTCAAAGAGCAGGCT 57.174 40.909 4.17 0.00 32.04 4.58
4719 5413 4.128925 TGTATACTCAAAGAGCAGGCTG 57.871 45.455 10.94 10.94 32.04 4.85
4720 5414 2.035530 ATACTCAAAGAGCAGGCTGC 57.964 50.000 31.56 31.56 45.46 5.25
4729 5423 4.609995 GCAGGCTGCATTGCAAAT 57.390 50.000 33.33 0.00 44.26 2.32
4730 5424 2.849081 GCAGGCTGCATTGCAAATT 58.151 47.368 33.33 0.00 44.26 1.82
4731 5425 2.012937 GCAGGCTGCATTGCAAATTA 57.987 45.000 33.33 0.00 44.26 1.40
4732 5426 2.557317 GCAGGCTGCATTGCAAATTAT 58.443 42.857 33.33 0.00 44.26 1.28
4733 5427 2.542595 GCAGGCTGCATTGCAAATTATC 59.457 45.455 33.33 0.00 44.26 1.75
4734 5428 2.792674 CAGGCTGCATTGCAAATTATCG 59.207 45.455 13.18 0.07 38.41 2.92
4735 5429 2.689471 AGGCTGCATTGCAAATTATCGA 59.311 40.909 13.18 0.00 38.41 3.59
4736 5430 3.130869 AGGCTGCATTGCAAATTATCGAA 59.869 39.130 13.18 0.00 38.41 3.71
4737 5431 3.488310 GGCTGCATTGCAAATTATCGAAG 59.512 43.478 13.18 0.00 38.41 3.79
4738 5432 4.107622 GCTGCATTGCAAATTATCGAAGT 58.892 39.130 13.18 0.00 38.41 3.01
4739 5433 4.205792 GCTGCATTGCAAATTATCGAAGTC 59.794 41.667 13.18 0.00 38.41 3.01
4740 5434 4.671377 TGCATTGCAAATTATCGAAGTCC 58.329 39.130 9.33 0.00 34.76 3.85
4741 5435 4.044426 GCATTGCAAATTATCGAAGTCCC 58.956 43.478 1.71 0.00 0.00 4.46
4742 5436 4.202050 GCATTGCAAATTATCGAAGTCCCT 60.202 41.667 1.71 0.00 0.00 4.20
4743 5437 5.679638 GCATTGCAAATTATCGAAGTCCCTT 60.680 40.000 1.71 0.00 0.00 3.95
4744 5438 5.975693 TTGCAAATTATCGAAGTCCCTTT 57.024 34.783 0.00 0.00 0.00 3.11
4745 5439 5.975693 TGCAAATTATCGAAGTCCCTTTT 57.024 34.783 0.00 0.00 0.00 2.27
4746 5440 7.455641 TTGCAAATTATCGAAGTCCCTTTTA 57.544 32.000 0.00 0.00 0.00 1.52
4747 5441 7.639113 TGCAAATTATCGAAGTCCCTTTTAT 57.361 32.000 0.00 0.00 0.00 1.40
4748 5442 8.062065 TGCAAATTATCGAAGTCCCTTTTATT 57.938 30.769 0.00 0.00 0.00 1.40
4749 5443 7.973388 TGCAAATTATCGAAGTCCCTTTTATTG 59.027 33.333 0.00 0.00 0.00 1.90
4750 5444 7.043391 GCAAATTATCGAAGTCCCTTTTATTGC 60.043 37.037 0.00 0.00 0.00 3.56
4751 5445 7.881775 AATTATCGAAGTCCCTTTTATTGCT 57.118 32.000 0.00 0.00 0.00 3.91
4752 5446 6.920569 TTATCGAAGTCCCTTTTATTGCTC 57.079 37.500 0.00 0.00 0.00 4.26
4753 5447 4.280436 TCGAAGTCCCTTTTATTGCTCA 57.720 40.909 0.00 0.00 0.00 4.26
4754 5448 4.000988 TCGAAGTCCCTTTTATTGCTCAC 58.999 43.478 0.00 0.00 0.00 3.51
4755 5449 4.003648 CGAAGTCCCTTTTATTGCTCACT 58.996 43.478 0.00 0.00 0.00 3.41
4756 5450 4.142816 CGAAGTCCCTTTTATTGCTCACTG 60.143 45.833 0.00 0.00 0.00 3.66
4757 5451 3.084786 AGTCCCTTTTATTGCTCACTGC 58.915 45.455 0.00 0.00 43.25 4.40
4758 5452 3.084786 GTCCCTTTTATTGCTCACTGCT 58.915 45.455 0.00 0.00 43.37 4.24
4759 5453 3.084039 TCCCTTTTATTGCTCACTGCTG 58.916 45.455 0.00 0.00 43.37 4.41
4760 5454 2.416431 CCCTTTTATTGCTCACTGCTGC 60.416 50.000 0.00 0.00 43.37 5.25
4761 5455 2.416431 CCTTTTATTGCTCACTGCTGCC 60.416 50.000 0.00 0.00 43.37 4.85
4762 5456 1.908344 TTTATTGCTCACTGCTGCCA 58.092 45.000 0.00 0.00 43.37 4.92
4763 5457 1.908344 TTATTGCTCACTGCTGCCAA 58.092 45.000 0.00 0.00 43.37 4.52
4764 5458 1.908344 TATTGCTCACTGCTGCCAAA 58.092 45.000 0.00 0.00 43.37 3.28
4765 5459 1.042229 ATTGCTCACTGCTGCCAAAA 58.958 45.000 0.00 0.00 43.37 2.44
4766 5460 1.042229 TTGCTCACTGCTGCCAAAAT 58.958 45.000 0.00 0.00 43.37 1.82
4767 5461 1.042229 TGCTCACTGCTGCCAAAATT 58.958 45.000 0.00 0.00 43.37 1.82
4768 5462 2.237643 TGCTCACTGCTGCCAAAATTA 58.762 42.857 0.00 0.00 43.37 1.40
4769 5463 2.627221 TGCTCACTGCTGCCAAAATTAA 59.373 40.909 0.00 0.00 43.37 1.40
4770 5464 2.989166 GCTCACTGCTGCCAAAATTAAC 59.011 45.455 0.00 0.00 38.95 2.01
4771 5465 3.578688 CTCACTGCTGCCAAAATTAACC 58.421 45.455 0.00 0.00 0.00 2.85
4772 5466 3.230134 TCACTGCTGCCAAAATTAACCT 58.770 40.909 0.00 0.00 0.00 3.50
4773 5467 3.640967 TCACTGCTGCCAAAATTAACCTT 59.359 39.130 0.00 0.00 0.00 3.50
4774 5468 3.742369 CACTGCTGCCAAAATTAACCTTG 59.258 43.478 0.00 0.00 0.00 3.61
4775 5469 3.244181 ACTGCTGCCAAAATTAACCTTGG 60.244 43.478 11.48 11.48 44.23 3.61
4776 5470 2.968574 TGCTGCCAAAATTAACCTTGGA 59.031 40.909 17.68 5.83 44.16 3.53
4777 5471 3.244044 TGCTGCCAAAATTAACCTTGGAC 60.244 43.478 17.68 11.03 44.16 4.02
4778 5472 3.244044 GCTGCCAAAATTAACCTTGGACA 60.244 43.478 17.68 13.88 44.16 4.02
4779 5473 4.306600 CTGCCAAAATTAACCTTGGACAC 58.693 43.478 17.68 4.76 44.16 3.67
4780 5474 3.964031 TGCCAAAATTAACCTTGGACACT 59.036 39.130 17.68 0.00 44.16 3.55
4781 5475 4.407296 TGCCAAAATTAACCTTGGACACTT 59.593 37.500 17.68 0.00 44.16 3.16
4782 5476 4.988540 GCCAAAATTAACCTTGGACACTTC 59.011 41.667 17.68 0.22 44.16 3.01
4783 5477 5.452636 GCCAAAATTAACCTTGGACACTTCA 60.453 40.000 17.68 0.00 44.16 3.02
4784 5478 6.578023 CCAAAATTAACCTTGGACACTTCAA 58.422 36.000 10.62 0.00 44.16 2.69
4785 5479 7.216494 CCAAAATTAACCTTGGACACTTCAAT 58.784 34.615 10.62 0.00 44.16 2.57
4786 5480 8.364142 CCAAAATTAACCTTGGACACTTCAATA 58.636 33.333 10.62 0.00 44.16 1.90
4787 5481 9.410556 CAAAATTAACCTTGGACACTTCAATAG 57.589 33.333 0.00 0.00 0.00 1.73
4788 5482 8.706322 AAATTAACCTTGGACACTTCAATAGT 57.294 30.769 0.00 0.00 37.68 2.12
4789 5483 8.706322 AATTAACCTTGGACACTTCAATAGTT 57.294 30.769 0.00 0.00 33.85 2.24
4790 5484 7.504924 TTAACCTTGGACACTTCAATAGTTG 57.495 36.000 0.00 0.00 33.85 3.16
4791 5485 5.048846 ACCTTGGACACTTCAATAGTTGT 57.951 39.130 0.00 0.00 33.85 3.32
4792 5486 5.063880 ACCTTGGACACTTCAATAGTTGTC 58.936 41.667 0.00 0.00 33.85 3.18
4793 5487 5.163195 ACCTTGGACACTTCAATAGTTGTCT 60.163 40.000 0.00 0.00 36.25 3.41
4794 5488 5.765182 CCTTGGACACTTCAATAGTTGTCTT 59.235 40.000 0.00 0.00 36.25 3.01
4795 5489 6.263168 CCTTGGACACTTCAATAGTTGTCTTT 59.737 38.462 0.00 0.00 36.25 2.52
4796 5490 6.861065 TGGACACTTCAATAGTTGTCTTTC 57.139 37.500 0.00 0.00 36.25 2.62
4797 5491 6.353323 TGGACACTTCAATAGTTGTCTTTCA 58.647 36.000 0.00 0.00 36.25 2.69
4798 5492 6.998074 TGGACACTTCAATAGTTGTCTTTCAT 59.002 34.615 0.00 0.00 36.25 2.57
4799 5493 7.173218 TGGACACTTCAATAGTTGTCTTTCATC 59.827 37.037 0.00 0.00 36.25 2.92
4800 5494 7.121974 ACACTTCAATAGTTGTCTTTCATCG 57.878 36.000 0.00 0.00 33.85 3.84
4801 5495 6.706270 ACACTTCAATAGTTGTCTTTCATCGT 59.294 34.615 0.00 0.00 33.85 3.73
4802 5496 7.226720 ACACTTCAATAGTTGTCTTTCATCGTT 59.773 33.333 0.00 0.00 33.85 3.85
4803 5497 7.742089 CACTTCAATAGTTGTCTTTCATCGTTC 59.258 37.037 0.00 0.00 33.85 3.95
4804 5498 7.441157 ACTTCAATAGTTGTCTTTCATCGTTCA 59.559 33.333 0.00 0.00 31.29 3.18
4805 5499 7.117241 TCAATAGTTGTCTTTCATCGTTCAC 57.883 36.000 0.00 0.00 0.00 3.18
4806 5500 6.147164 TCAATAGTTGTCTTTCATCGTTCACC 59.853 38.462 0.00 0.00 0.00 4.02
4807 5501 3.139077 AGTTGTCTTTCATCGTTCACCC 58.861 45.455 0.00 0.00 0.00 4.61
4808 5502 1.790755 TGTCTTTCATCGTTCACCCG 58.209 50.000 0.00 0.00 0.00 5.28
4809 5503 1.341852 TGTCTTTCATCGTTCACCCGA 59.658 47.619 0.00 0.00 41.73 5.14
4810 5504 1.993370 GTCTTTCATCGTTCACCCGAG 59.007 52.381 0.00 0.00 40.68 4.63
4811 5505 0.721718 CTTTCATCGTTCACCCGAGC 59.278 55.000 0.00 0.00 40.68 5.03
4812 5506 0.034198 TTTCATCGTTCACCCGAGCA 59.966 50.000 0.00 0.00 40.68 4.26
4813 5507 0.034198 TTCATCGTTCACCCGAGCAA 59.966 50.000 0.00 0.00 40.68 3.91
4814 5508 0.669318 TCATCGTTCACCCGAGCAAC 60.669 55.000 0.00 0.00 40.68 4.17
4815 5509 0.670546 CATCGTTCACCCGAGCAACT 60.671 55.000 0.00 0.00 40.68 3.16
4816 5510 0.892755 ATCGTTCACCCGAGCAACTA 59.107 50.000 0.00 0.00 40.68 2.24
4817 5511 0.675083 TCGTTCACCCGAGCAACTAA 59.325 50.000 0.00 0.00 32.18 2.24
4818 5512 1.068474 CGTTCACCCGAGCAACTAAG 58.932 55.000 0.00 0.00 0.00 2.18
4819 5513 0.796927 GTTCACCCGAGCAACTAAGC 59.203 55.000 0.00 0.00 0.00 3.09
4820 5514 0.394938 TTCACCCGAGCAACTAAGCA 59.605 50.000 0.00 0.00 36.85 3.91
4821 5515 0.613260 TCACCCGAGCAACTAAGCAT 59.387 50.000 0.00 0.00 36.85 3.79
4822 5516 1.003118 TCACCCGAGCAACTAAGCATT 59.997 47.619 0.00 0.00 36.85 3.56
4823 5517 1.812571 CACCCGAGCAACTAAGCATTT 59.187 47.619 0.00 0.00 36.85 2.32
4824 5518 2.228822 CACCCGAGCAACTAAGCATTTT 59.771 45.455 0.00 0.00 36.85 1.82
4825 5519 2.488153 ACCCGAGCAACTAAGCATTTTC 59.512 45.455 0.00 0.00 36.85 2.29
4826 5520 2.159379 CCCGAGCAACTAAGCATTTTCC 60.159 50.000 0.00 0.00 36.85 3.13
4827 5521 2.487762 CCGAGCAACTAAGCATTTTCCA 59.512 45.455 0.00 0.00 36.85 3.53
4828 5522 3.129287 CCGAGCAACTAAGCATTTTCCAT 59.871 43.478 0.00 0.00 36.85 3.41
4829 5523 4.335315 CCGAGCAACTAAGCATTTTCCATA 59.665 41.667 0.00 0.00 36.85 2.74
4830 5524 5.009010 CCGAGCAACTAAGCATTTTCCATAT 59.991 40.000 0.00 0.00 36.85 1.78
4831 5525 6.204688 CCGAGCAACTAAGCATTTTCCATATA 59.795 38.462 0.00 0.00 36.85 0.86
4832 5526 7.255104 CCGAGCAACTAAGCATTTTCCATATAA 60.255 37.037 0.00 0.00 36.85 0.98
4833 5527 8.128582 CGAGCAACTAAGCATTTTCCATATAAA 58.871 33.333 0.00 0.00 36.85 1.40
4834 5528 9.801873 GAGCAACTAAGCATTTTCCATATAAAA 57.198 29.630 0.00 0.00 36.85 1.52
4860 5554 8.034058 ACACTTAATATCTCTTCAACACAAGC 57.966 34.615 0.00 0.00 0.00 4.01
4861 5555 7.661437 ACACTTAATATCTCTTCAACACAAGCA 59.339 33.333 0.00 0.00 0.00 3.91
4862 5556 8.506437 CACTTAATATCTCTTCAACACAAGCAA 58.494 33.333 0.00 0.00 0.00 3.91
4863 5557 8.507249 ACTTAATATCTCTTCAACACAAGCAAC 58.493 33.333 0.00 0.00 0.00 4.17
4864 5558 6.882610 AATATCTCTTCAACACAAGCAACA 57.117 33.333 0.00 0.00 0.00 3.33
4865 5559 6.882610 ATATCTCTTCAACACAAGCAACAA 57.117 33.333 0.00 0.00 0.00 2.83
4866 5560 5.581126 ATCTCTTCAACACAAGCAACAAA 57.419 34.783 0.00 0.00 0.00 2.83
4867 5561 5.384063 TCTCTTCAACACAAGCAACAAAA 57.616 34.783 0.00 0.00 0.00 2.44
4868 5562 5.160641 TCTCTTCAACACAAGCAACAAAAC 58.839 37.500 0.00 0.00 0.00 2.43
4869 5563 4.241681 TCTTCAACACAAGCAACAAAACC 58.758 39.130 0.00 0.00 0.00 3.27
4870 5564 3.667497 TCAACACAAGCAACAAAACCA 57.333 38.095 0.00 0.00 0.00 3.67
4871 5565 3.995199 TCAACACAAGCAACAAAACCAA 58.005 36.364 0.00 0.00 0.00 3.67
4872 5566 4.380531 TCAACACAAGCAACAAAACCAAA 58.619 34.783 0.00 0.00 0.00 3.28
4873 5567 4.450419 TCAACACAAGCAACAAAACCAAAG 59.550 37.500 0.00 0.00 0.00 2.77
4874 5568 3.333804 ACACAAGCAACAAAACCAAAGG 58.666 40.909 0.00 0.00 0.00 3.11
4875 5569 2.095692 CACAAGCAACAAAACCAAAGGC 59.904 45.455 0.00 0.00 0.00 4.35
4876 5570 1.327156 CAAGCAACAAAACCAAAGGCG 59.673 47.619 0.00 0.00 0.00 5.52
4877 5571 0.820871 AGCAACAAAACCAAAGGCGA 59.179 45.000 0.00 0.00 0.00 5.54
4878 5572 1.205893 AGCAACAAAACCAAAGGCGAA 59.794 42.857 0.00 0.00 0.00 4.70
4879 5573 1.326245 GCAACAAAACCAAAGGCGAAC 59.674 47.619 0.00 0.00 0.00 3.95
4880 5574 1.930503 CAACAAAACCAAAGGCGAACC 59.069 47.619 0.00 0.00 0.00 3.62
4893 5587 3.643159 GGCGAACCTTCAATTCTGTTT 57.357 42.857 0.00 0.00 0.00 2.83
4894 5588 3.308530 GGCGAACCTTCAATTCTGTTTG 58.691 45.455 0.00 0.00 0.00 2.93
4895 5589 3.243401 GGCGAACCTTCAATTCTGTTTGT 60.243 43.478 0.00 0.00 0.00 2.83
4896 5590 4.359706 GCGAACCTTCAATTCTGTTTGTT 58.640 39.130 0.00 0.00 0.00 2.83
4897 5591 5.506649 GGCGAACCTTCAATTCTGTTTGTTA 60.507 40.000 0.00 0.00 0.00 2.41
4898 5592 6.149633 GCGAACCTTCAATTCTGTTTGTTAT 58.850 36.000 0.00 0.00 0.00 1.89
4899 5593 7.302524 GCGAACCTTCAATTCTGTTTGTTATA 58.697 34.615 0.00 0.00 0.00 0.98
4900 5594 7.806014 GCGAACCTTCAATTCTGTTTGTTATAA 59.194 33.333 0.00 0.00 0.00 0.98
4901 5595 9.672086 CGAACCTTCAATTCTGTTTGTTATAAA 57.328 29.630 0.00 0.00 0.00 1.40
4933 5627 9.408648 ACATTAGTAACCAAAATTCTATCCTGG 57.591 33.333 0.00 0.00 0.00 4.45
4934 5628 9.627123 CATTAGTAACCAAAATTCTATCCTGGA 57.373 33.333 0.00 0.00 0.00 3.86
4935 5629 9.853177 ATTAGTAACCAAAATTCTATCCTGGAG 57.147 33.333 1.52 0.00 0.00 3.86
4936 5630 6.122964 AGTAACCAAAATTCTATCCTGGAGC 58.877 40.000 1.52 0.00 0.00 4.70
4937 5631 4.591321 ACCAAAATTCTATCCTGGAGCA 57.409 40.909 1.52 0.00 0.00 4.26
4938 5632 4.273318 ACCAAAATTCTATCCTGGAGCAC 58.727 43.478 1.52 0.00 0.00 4.40
4939 5633 4.018050 ACCAAAATTCTATCCTGGAGCACT 60.018 41.667 1.52 0.00 0.00 4.40
4940 5634 4.578105 CCAAAATTCTATCCTGGAGCACTC 59.422 45.833 1.52 0.00 0.00 3.51
4941 5635 5.188434 CAAAATTCTATCCTGGAGCACTCA 58.812 41.667 1.52 0.00 0.00 3.41
4942 5636 5.441718 AAATTCTATCCTGGAGCACTCAA 57.558 39.130 1.52 0.00 0.00 3.02
4943 5637 3.895232 TTCTATCCTGGAGCACTCAAC 57.105 47.619 1.52 0.00 0.00 3.18
4944 5638 3.107402 TCTATCCTGGAGCACTCAACT 57.893 47.619 1.52 0.00 0.00 3.16
4945 5639 3.027412 TCTATCCTGGAGCACTCAACTC 58.973 50.000 1.52 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 66 1.775385 GTCAGAGAGAGAGAAGGGGG 58.225 60.000 0.00 0.00 0.00 5.40
50 68 2.014128 GTCGTCAGAGAGAGAGAAGGG 58.986 57.143 0.00 0.00 0.00 3.95
52 70 2.603110 CGAGTCGTCAGAGAGAGAGAAG 59.397 54.545 3.82 0.00 0.00 2.85
53 71 2.612604 CGAGTCGTCAGAGAGAGAGAA 58.387 52.381 3.82 0.00 0.00 2.87
171 200 3.981212 AGAAGAAGAAGAGGAGGAGGAG 58.019 50.000 0.00 0.00 0.00 3.69
172 201 4.349365 GAAGAAGAAGAAGAGGAGGAGGA 58.651 47.826 0.00 0.00 0.00 3.71
173 202 3.450817 GGAAGAAGAAGAAGAGGAGGAGG 59.549 52.174 0.00 0.00 0.00 4.30
174 203 4.352893 AGGAAGAAGAAGAAGAGGAGGAG 58.647 47.826 0.00 0.00 0.00 3.69
175 204 4.349365 GAGGAAGAAGAAGAAGAGGAGGA 58.651 47.826 0.00 0.00 0.00 3.71
176 205 3.450817 GGAGGAAGAAGAAGAAGAGGAGG 59.549 52.174 0.00 0.00 0.00 4.30
177 206 4.160252 CAGGAGGAAGAAGAAGAAGAGGAG 59.840 50.000 0.00 0.00 0.00 3.69
178 207 4.093011 CAGGAGGAAGAAGAAGAAGAGGA 58.907 47.826 0.00 0.00 0.00 3.71
179 208 3.837731 ACAGGAGGAAGAAGAAGAAGAGG 59.162 47.826 0.00 0.00 0.00 3.69
180 209 4.283212 ACACAGGAGGAAGAAGAAGAAGAG 59.717 45.833 0.00 0.00 0.00 2.85
195 224 4.211374 CAGTCCTAAACGAAAACACAGGAG 59.789 45.833 0.00 0.00 32.98 3.69
202 231 4.084171 GCAGGTACAGTCCTAAACGAAAAC 60.084 45.833 0.00 0.00 35.87 2.43
203 232 4.060205 GCAGGTACAGTCCTAAACGAAAA 58.940 43.478 0.00 0.00 35.87 2.29
204 233 3.656559 GCAGGTACAGTCCTAAACGAAA 58.343 45.455 0.00 0.00 35.87 3.46
206 235 1.200716 CGCAGGTACAGTCCTAAACGA 59.799 52.381 0.00 0.00 35.87 3.85
244 273 1.757699 ACGAGCTTCTCCACCTAATCC 59.242 52.381 0.00 0.00 0.00 3.01
310 343 1.117994 GGGTAAAGTAGGACGGGAGG 58.882 60.000 0.00 0.00 0.00 4.30
347 381 6.211384 TCATCCGATCTGATATTTAGCCTCAA 59.789 38.462 0.00 0.00 0.00 3.02
390 424 4.373116 ACTACGGCGGTGCTGGTG 62.373 66.667 13.24 0.00 39.57 4.17
391 425 4.373116 CACTACGGCGGTGCTGGT 62.373 66.667 13.24 0.00 39.57 4.00
393 427 3.876589 AACCACTACGGCGGTGCTG 62.877 63.158 13.24 1.55 41.29 4.41
394 428 2.669777 AAAACCACTACGGCGGTGCT 62.670 55.000 13.24 0.00 39.03 4.40
395 429 2.178892 GAAAACCACTACGGCGGTGC 62.179 60.000 13.24 0.00 39.03 5.01
396 430 1.571215 GGAAAACCACTACGGCGGTG 61.571 60.000 13.24 10.73 39.03 4.94
400 437 1.620413 CGTCGGAAAACCACTACGGC 61.620 60.000 0.00 0.00 39.03 5.68
571 619 2.755103 CAAGCAAACACTTATCCCCTCC 59.245 50.000 0.00 0.00 0.00 4.30
609 657 1.546476 CAGTAAGCGAAGAGTGGGAGT 59.454 52.381 0.00 0.00 0.00 3.85
629 677 4.404654 CGGCCGAACCAAAGCAGC 62.405 66.667 24.07 0.00 39.03 5.25
630 678 2.978010 ACGGCCGAACCAAAGCAG 60.978 61.111 35.90 0.00 39.03 4.24
631 679 3.283684 CACGGCCGAACCAAAGCA 61.284 61.111 35.90 0.00 39.03 3.91
667 715 4.649692 TGCTTCTGCTTCTGATTCTTCTT 58.350 39.130 0.00 0.00 40.48 2.52
668 716 4.020396 TCTGCTTCTGCTTCTGATTCTTCT 60.020 41.667 0.00 0.00 40.48 2.85
669 717 4.252073 TCTGCTTCTGCTTCTGATTCTTC 58.748 43.478 0.00 0.00 40.48 2.87
670 718 4.283363 TCTGCTTCTGCTTCTGATTCTT 57.717 40.909 0.00 0.00 40.48 2.52
671 719 3.977134 TCTGCTTCTGCTTCTGATTCT 57.023 42.857 0.00 0.00 40.48 2.40
672 720 5.564048 AATTCTGCTTCTGCTTCTGATTC 57.436 39.130 0.00 0.00 40.48 2.52
673 721 7.642082 AATAATTCTGCTTCTGCTTCTGATT 57.358 32.000 0.00 0.00 40.48 2.57
674 722 8.209584 TCTAATAATTCTGCTTCTGCTTCTGAT 58.790 33.333 0.00 0.00 40.48 2.90
675 723 7.559486 TCTAATAATTCTGCTTCTGCTTCTGA 58.441 34.615 0.00 0.00 40.48 3.27
679 727 5.530543 GCCTCTAATAATTCTGCTTCTGCTT 59.469 40.000 0.00 0.00 40.48 3.91
734 785 2.249844 TTTCTTCTCGGCCTTTTCGT 57.750 45.000 0.00 0.00 0.00 3.85
757 809 4.698575 AGAAGAGATCGCACCTTTTATCC 58.301 43.478 0.00 0.00 0.00 2.59
784 836 5.353956 CCCCAAAAGAAAAGAAAAGGTTGTG 59.646 40.000 0.00 0.00 0.00 3.33
816 868 2.752030 ACTGGAGAGGATTCGATGGAA 58.248 47.619 0.00 0.00 36.41 3.53
835 887 3.552604 TTCTGGCTCGCAATAAACAAC 57.447 42.857 0.00 0.00 0.00 3.32
837 889 4.458989 AGAAATTCTGGCTCGCAATAAACA 59.541 37.500 0.00 0.00 0.00 2.83
882 949 4.514781 ACTTTGCTACCGAATTTTTCCC 57.485 40.909 0.00 0.00 0.00 3.97
917 984 2.073816 GTCGAAGAGGCGATCCAAAAA 58.926 47.619 0.00 0.00 42.82 1.94
921 988 0.456221 GAAGTCGAAGAGGCGATCCA 59.544 55.000 0.00 0.00 42.82 3.41
945 1012 4.093514 GCAAGAATCACGACAACATCATG 58.906 43.478 0.00 0.00 0.00 3.07
952 1019 2.254546 ACCTGCAAGAATCACGACAA 57.745 45.000 0.00 0.00 34.07 3.18
987 1054 0.608035 AACCCATGGACGCGTGAAAT 60.608 50.000 20.70 3.92 0.00 2.17
990 1057 2.358125 CAACCCATGGACGCGTGA 60.358 61.111 20.70 2.33 0.00 4.35
1012 1079 3.103911 GTTGTCCGGCGTCGACAG 61.104 66.667 12.93 9.59 39.00 3.51
1080 1147 2.949106 GGGACGAAGACGACGACA 59.051 61.111 0.00 0.00 42.66 4.35
1281 1348 3.751479 AAAACCACCAAAGGATTCAGC 57.249 42.857 0.00 0.00 0.00 4.26
1288 1355 1.474855 CCAGGCAAAAACCACCAAAGG 60.475 52.381 0.00 0.00 0.00 3.11
1308 1376 1.150827 GCAAAACCAAGCCAGCAATC 58.849 50.000 0.00 0.00 0.00 2.67
1318 1386 2.028130 ACATCTTCCACGCAAAACCAA 58.972 42.857 0.00 0.00 0.00 3.67
1398 1469 1.699634 TGAAGGAGGTTAGCAGTGCTT 59.300 47.619 25.23 4.49 40.44 3.91
1416 1487 1.282447 AGGTAGTCTTCGAGAGCCTGA 59.718 52.381 0.00 0.00 0.00 3.86
1422 1493 1.271982 ACTGGCAGGTAGTCTTCGAGA 60.272 52.381 20.34 0.00 0.00 4.04
1425 1496 1.546476 AGAACTGGCAGGTAGTCTTCG 59.454 52.381 20.34 0.00 0.00 3.79
1435 1506 2.286872 CAATCCTAGCAGAACTGGCAG 58.713 52.381 14.16 14.16 0.00 4.85
1441 1512 4.579869 TCTTTCACCAATCCTAGCAGAAC 58.420 43.478 0.00 0.00 0.00 3.01
1488 1559 9.750125 ATACAAAACCAATGAAAAGAAGAAGAC 57.250 29.630 0.00 0.00 0.00 3.01
1648 1725 3.294493 GAAAGCACGGGCAGGCAA 61.294 61.111 14.57 0.00 44.61 4.52
1651 1728 3.365265 GGTGAAAGCACGGGCAGG 61.365 66.667 14.57 0.00 46.09 4.85
1659 1736 2.687935 GAGGTGAACTTTGGTGAAAGCA 59.312 45.455 0.00 0.00 46.28 3.91
1660 1737 2.687935 TGAGGTGAACTTTGGTGAAAGC 59.312 45.455 0.00 0.00 42.19 3.51
1672 1764 0.034616 AGCTGAGCACTGAGGTGAAC 59.965 55.000 7.39 0.00 45.61 3.18
1675 1767 1.180907 TAGAGCTGAGCACTGAGGTG 58.819 55.000 14.69 0.00 45.53 4.00
1687 1789 0.911769 TCCCACCCATGTTAGAGCTG 59.088 55.000 0.00 0.00 0.00 4.24
1701 1808 0.243636 CCTGCAACCGAAAATCCCAC 59.756 55.000 0.00 0.00 0.00 4.61
1906 2013 6.371278 ACATTCTCCATTTCTCAATGCCTAT 58.629 36.000 0.00 0.00 38.88 2.57
1909 2016 4.996788 ACATTCTCCATTTCTCAATGCC 57.003 40.909 0.00 0.00 38.88 4.40
1920 2027 4.422073 TTAGGCGATGAACATTCTCCAT 57.578 40.909 0.00 0.00 0.00 3.41
1940 2047 4.937015 ACAGAAAAACTTGCAATGCACTTT 59.063 33.333 7.72 5.81 38.71 2.66
2026 2135 5.163663 TGCTTTCAAGAAAACATCGACAGTT 60.164 36.000 0.00 0.00 0.00 3.16
2035 2144 3.981211 GCCAGATGCTTTCAAGAAAACA 58.019 40.909 1.62 1.62 36.87 2.83
2083 2192 3.404869 TCTGATGGTATCTGTGGGAGT 57.595 47.619 0.00 0.00 0.00 3.85
2122 2231 1.066605 GTTATCTCGTGAGGCGGCTTA 59.933 52.381 14.76 6.01 41.72 3.09
2276 2399 1.302285 CCTGACCCAGAGCTTGCAT 59.698 57.895 0.00 0.00 32.44 3.96
2343 2467 2.830651 TTGTTGTAGGGTGTTTGGGT 57.169 45.000 0.00 0.00 0.00 4.51
2352 2476 4.000988 AGCTCGTTTGTATTGTTGTAGGG 58.999 43.478 0.00 0.00 0.00 3.53
2364 2488 0.304705 CTTCGCAACAGCTCGTTTGT 59.695 50.000 0.00 0.00 34.86 2.83
2399 2523 6.366061 GGCCATTTCAAACTTCATCAAACTAC 59.634 38.462 0.00 0.00 0.00 2.73
2429 2553 3.494398 CCCTTTCCAGTGATACCATACCG 60.494 52.174 0.00 0.00 0.00 4.02
2661 2785 1.602323 GGCGGTGTTTGGGTCATGA 60.602 57.895 0.00 0.00 0.00 3.07
2666 3001 0.834687 TCTCTAGGCGGTGTTTGGGT 60.835 55.000 0.00 0.00 0.00 4.51
2667 3002 0.108138 CTCTCTAGGCGGTGTTTGGG 60.108 60.000 0.00 0.00 0.00 4.12
2696 3037 2.507058 TGTTGCTTCAGGGATGATAGCT 59.493 45.455 0.00 0.00 33.15 3.32
2697 3038 2.923121 TGTTGCTTCAGGGATGATAGC 58.077 47.619 0.00 0.00 0.00 2.97
2704 3045 5.448654 AGCATATAAATGTTGCTTCAGGGA 58.551 37.500 0.00 0.00 43.94 4.20
2800 3145 9.838339 ACTGTATCTGAAGTTAATTAGGAATGG 57.162 33.333 0.00 0.00 0.00 3.16
2842 3187 5.669164 ATGACTCCTGAGAAAAGAGGTAC 57.331 43.478 0.22 0.00 31.70 3.34
2843 3188 7.070074 GGAATATGACTCCTGAGAAAAGAGGTA 59.930 40.741 0.22 0.00 31.70 3.08
2844 3189 6.126911 GGAATATGACTCCTGAGAAAAGAGGT 60.127 42.308 0.22 0.00 31.70 3.85
2845 3190 6.126940 TGGAATATGACTCCTGAGAAAAGAGG 60.127 42.308 0.22 0.00 33.77 3.69
2846 3191 6.882656 TGGAATATGACTCCTGAGAAAAGAG 58.117 40.000 0.22 0.00 33.77 2.85
2847 3192 6.874278 TGGAATATGACTCCTGAGAAAAGA 57.126 37.500 0.22 0.00 33.77 2.52
2904 3251 5.997129 ACCATGAAACAAAATCAAATGGGAC 59.003 36.000 0.00 0.00 33.27 4.46
2905 3252 6.183361 TGACCATGAAACAAAATCAAATGGGA 60.183 34.615 0.00 0.00 33.27 4.37
2906 3253 5.996513 TGACCATGAAACAAAATCAAATGGG 59.003 36.000 0.00 0.00 33.27 4.00
2907 3254 7.493743 TTGACCATGAAACAAAATCAAATGG 57.506 32.000 0.00 0.00 34.54 3.16
2908 3255 9.388346 CAATTGACCATGAAACAAAATCAAATG 57.612 29.630 0.00 0.00 0.00 2.32
2909 3256 8.569641 CCAATTGACCATGAAACAAAATCAAAT 58.430 29.630 7.12 0.00 0.00 2.32
2910 3257 7.555554 ACCAATTGACCATGAAACAAAATCAAA 59.444 29.630 7.12 0.00 0.00 2.69
2911 3258 7.052873 ACCAATTGACCATGAAACAAAATCAA 58.947 30.769 7.12 0.00 0.00 2.57
2912 3259 6.590068 ACCAATTGACCATGAAACAAAATCA 58.410 32.000 7.12 0.00 0.00 2.57
2913 3260 6.705381 TGACCAATTGACCATGAAACAAAATC 59.295 34.615 7.12 0.00 0.00 2.17
2914 3261 6.590068 TGACCAATTGACCATGAAACAAAAT 58.410 32.000 7.12 0.00 0.00 1.82
2915 3262 5.982356 TGACCAATTGACCATGAAACAAAA 58.018 33.333 7.12 0.00 0.00 2.44
2916 3263 5.604758 TGACCAATTGACCATGAAACAAA 57.395 34.783 7.12 0.00 0.00 2.83
2992 3339 0.962356 CCTTTGGGCTGTCGATTGCT 60.962 55.000 11.38 0.00 0.00 3.91
3043 3390 4.214980 GTGCCAATATTTCACCATCTCG 57.785 45.455 6.41 0.00 0.00 4.04
3052 3399 3.131046 CCTGAACCTGGTGCCAATATTTC 59.869 47.826 0.00 0.00 0.00 2.17
3088 3435 2.354259 CATCCTTCAGACACAGGAAGC 58.646 52.381 0.00 0.00 42.68 3.86
3124 3471 4.689345 ACGTACTTCCACTTGACAAATAGC 59.311 41.667 0.00 0.00 0.00 2.97
3195 3542 9.829507 TGATTTGAAAATTGGACAACTAACATT 57.170 25.926 0.00 0.00 0.00 2.71
3196 3543 9.260002 GTGATTTGAAAATTGGACAACTAACAT 57.740 29.630 0.00 0.00 0.00 2.71
3198 3545 8.641499 TGTGATTTGAAAATTGGACAACTAAC 57.359 30.769 0.00 0.00 0.00 2.34
3199 3546 9.658799 TTTGTGATTTGAAAATTGGACAACTAA 57.341 25.926 0.00 0.00 29.66 2.24
3200 3547 9.829507 ATTTGTGATTTGAAAATTGGACAACTA 57.170 25.926 0.00 0.00 29.66 2.24
3201 3548 8.614346 CATTTGTGATTTGAAAATTGGACAACT 58.386 29.630 0.00 0.00 29.66 3.16
3202 3549 8.397148 ACATTTGTGATTTGAAAATTGGACAAC 58.603 29.630 0.00 0.00 29.66 3.32
3203 3550 8.503458 ACATTTGTGATTTGAAAATTGGACAA 57.497 26.923 0.00 0.00 0.00 3.18
3205 3552 7.226325 TGGACATTTGTGATTTGAAAATTGGAC 59.774 33.333 0.00 0.00 0.00 4.02
3207 3554 7.493743 TGGACATTTGTGATTTGAAAATTGG 57.506 32.000 0.00 0.00 0.00 3.16
3208 3555 7.588488 GCTTGGACATTTGTGATTTGAAAATTG 59.412 33.333 0.00 0.00 0.00 2.32
3229 3576 3.334691 TGTCTATTTGAACTCGGCTTGG 58.665 45.455 0.00 0.00 0.00 3.61
3232 3579 3.006967 ACACTGTCTATTTGAACTCGGCT 59.993 43.478 0.00 0.00 0.00 5.52
3248 3595 8.150945 ACATATACAACTTGAAGAAGACACTGT 58.849 33.333 0.00 0.00 32.98 3.55
3249 3596 8.539770 ACATATACAACTTGAAGAAGACACTG 57.460 34.615 0.00 0.00 32.98 3.66
3250 3597 9.561069 AAACATATACAACTTGAAGAAGACACT 57.439 29.630 0.00 0.00 32.98 3.55
3251 3598 9.813080 GAAACATATACAACTTGAAGAAGACAC 57.187 33.333 0.00 0.00 32.98 3.67
3252 3599 8.708742 CGAAACATATACAACTTGAAGAAGACA 58.291 33.333 0.00 0.00 32.98 3.41
3253 3600 7.688578 GCGAAACATATACAACTTGAAGAAGAC 59.311 37.037 0.00 0.00 32.98 3.01
3254 3601 7.148474 GGCGAAACATATACAACTTGAAGAAGA 60.148 37.037 0.00 0.00 32.98 2.87
3255 3602 6.961554 GGCGAAACATATACAACTTGAAGAAG 59.038 38.462 0.00 0.00 35.07 2.85
3256 3603 6.653320 AGGCGAAACATATACAACTTGAAGAA 59.347 34.615 0.00 0.00 0.00 2.52
3257 3604 6.092122 CAGGCGAAACATATACAACTTGAAGA 59.908 38.462 0.00 0.00 0.00 2.87
3263 3610 3.605634 TGCAGGCGAAACATATACAACT 58.394 40.909 0.00 0.00 0.00 3.16
3264 3611 4.349663 TTGCAGGCGAAACATATACAAC 57.650 40.909 0.00 0.00 0.00 3.32
3266 3613 4.210328 CGTATTGCAGGCGAAACATATACA 59.790 41.667 1.24 0.00 0.00 2.29
3268 3615 3.743911 CCGTATTGCAGGCGAAACATATA 59.256 43.478 7.95 0.00 0.00 0.86
3298 3645 9.444600 AGTAACGTCAATTTTAGATGGTTGTAT 57.555 29.630 0.00 0.00 0.00 2.29
3313 3661 5.073311 AGAGCACATACAGTAACGTCAAT 57.927 39.130 0.00 0.00 0.00 2.57
3314 3662 4.514781 AGAGCACATACAGTAACGTCAA 57.485 40.909 0.00 0.00 0.00 3.18
3318 3666 6.266323 ACTGATAAGAGCACATACAGTAACG 58.734 40.000 0.00 0.00 35.77 3.18
3431 3779 6.966534 TTGCTTTCTTTCAGAAATTCCTCT 57.033 33.333 0.00 0.00 42.66 3.69
3518 4025 3.716601 GCCAAGTAGCAAACACATTTGT 58.283 40.909 2.05 0.00 45.97 2.83
3519 4026 2.725723 CGCCAAGTAGCAAACACATTTG 59.274 45.455 0.00 0.00 46.81 2.32
3520 4027 2.862140 GCGCCAAGTAGCAAACACATTT 60.862 45.455 0.00 0.00 0.00 2.32
3521 4028 1.335872 GCGCCAAGTAGCAAACACATT 60.336 47.619 0.00 0.00 0.00 2.71
3522 4029 0.240945 GCGCCAAGTAGCAAACACAT 59.759 50.000 0.00 0.00 0.00 3.21
3523 4030 1.098129 TGCGCCAAGTAGCAAACACA 61.098 50.000 4.18 0.00 40.78 3.72
3524 4031 0.660300 GTGCGCCAAGTAGCAAACAC 60.660 55.000 4.18 0.00 45.61 3.32
3525 4032 1.098129 TGTGCGCCAAGTAGCAAACA 61.098 50.000 4.18 0.00 45.61 2.83
3570 4077 7.875327 TTCTCATACCAAGGGTAAAATAAGC 57.125 36.000 0.00 0.00 41.85 3.09
3719 4228 8.475639 GTTCATTACCTTTCTGGAGTATACAGA 58.524 37.037 5.50 0.00 42.81 3.41
3867 4468 4.702131 GGTGTTAGTGCCAATGAGAAATCT 59.298 41.667 0.00 0.00 0.00 2.40
3900 4501 2.965831 TGGGTCTAATGGAGGAAGATCG 59.034 50.000 0.00 0.00 0.00 3.69
3972 4574 2.093235 CCTTCCCATCAGAAGACACTCC 60.093 54.545 2.91 0.00 45.08 3.85
4013 4615 0.036388 GGCAGAATCCTGGTCGTTGA 60.036 55.000 0.00 0.00 40.72 3.18
4058 4660 4.148871 CGGATCATATCTTTGTACACTGCG 59.851 45.833 0.00 0.00 0.00 5.18
4060 4662 6.273071 TGTCGGATCATATCTTTGTACACTG 58.727 40.000 0.00 0.00 0.00 3.66
4099 4704 8.291740 CCTTTCTAAAATTTGCTTCCAATTTGG 58.708 33.333 9.28 9.28 39.43 3.28
4177 4782 5.108517 TGGAAAGCTTTTGACAATGTGTTC 58.891 37.500 14.05 0.00 0.00 3.18
4288 4897 8.757982 AATTTACCACATGAATAAGCTCAGAT 57.242 30.769 0.00 0.00 0.00 2.90
4323 4932 4.107622 GCATTGAATGAAAATCTGGACCG 58.892 43.478 9.76 0.00 0.00 4.79
4383 4994 4.281941 AGTTCAGAGCTTCTGTATGTGTGA 59.718 41.667 11.37 0.00 44.58 3.58
4384 4995 4.388165 CAGTTCAGAGCTTCTGTATGTGTG 59.612 45.833 11.37 2.10 44.58 3.82
4476 5087 3.472263 GTGCAACGTGTTCCCAATC 57.528 52.632 0.00 0.00 0.00 2.67
4489 5183 1.323271 TGTTTTCTTGGGGCGTGCAA 61.323 50.000 0.00 0.00 0.00 4.08
4491 5185 0.033366 ATTGTTTTCTTGGGGCGTGC 59.967 50.000 0.00 0.00 0.00 5.34
4494 5188 2.163613 GGAGTATTGTTTTCTTGGGGCG 59.836 50.000 0.00 0.00 0.00 6.13
4500 5194 8.437575 TCTTTACAGAGGGAGTATTGTTTTCTT 58.562 33.333 0.00 0.00 0.00 2.52
4511 5205 9.495382 ACTCTTATATTTCTTTACAGAGGGAGT 57.505 33.333 0.00 0.00 32.21 3.85
4512 5206 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
4513 5207 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
4514 5208 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
4532 5226 9.998106 TTTAGATCACTAAAGCTAAACACTCTT 57.002 29.630 0.00 0.00 41.71 2.85
4533 5227 9.425577 GTTTAGATCACTAAAGCTAAACACTCT 57.574 33.333 15.87 0.00 45.85 3.24
4538 5232 9.425577 AGAGTGTTTAGATCACTAAAGCTAAAC 57.574 33.333 14.55 14.55 45.42 2.01
4539 5233 9.998106 AAGAGTGTTTAGATCACTAAAGCTAAA 57.002 29.630 0.00 0.00 45.42 1.85
4557 5251 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
4558 5252 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
4559 5253 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
4560 5254 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
4563 5257 9.984190 GGTACTCCCTCTGTAAAGAAATATAAG 57.016 37.037 0.00 0.00 0.00 1.73
4564 5258 9.725206 AGGTACTCCCTCTGTAAAGAAATATAA 57.275 33.333 0.00 0.00 40.71 0.98
4580 5274 6.828270 GCTGGTAGCTATGAGGTACTCCCT 62.828 54.167 13.76 0.00 46.94 4.20
4581 5275 4.625001 GCTGGTAGCTATGAGGTACTCCC 61.625 56.522 13.76 1.14 46.94 4.30
4582 5276 2.559231 GCTGGTAGCTATGAGGTACTCC 59.441 54.545 13.76 1.74 46.94 3.85
4649 5343 8.682710 TCCAATAGCTTTGTTAATCCATTGTAC 58.317 33.333 0.00 0.00 0.00 2.90
4650 5344 8.815565 TCCAATAGCTTTGTTAATCCATTGTA 57.184 30.769 0.00 0.00 0.00 2.41
4651 5345 7.716799 TCCAATAGCTTTGTTAATCCATTGT 57.283 32.000 0.00 0.00 0.00 2.71
4652 5346 9.252962 GATTCCAATAGCTTTGTTAATCCATTG 57.747 33.333 0.00 0.00 0.00 2.82
4653 5347 8.137437 CGATTCCAATAGCTTTGTTAATCCATT 58.863 33.333 0.00 0.00 0.00 3.16
4654 5348 7.502226 TCGATTCCAATAGCTTTGTTAATCCAT 59.498 33.333 0.00 0.00 0.00 3.41
4655 5349 6.826231 TCGATTCCAATAGCTTTGTTAATCCA 59.174 34.615 0.00 0.00 0.00 3.41
4656 5350 7.132863 GTCGATTCCAATAGCTTTGTTAATCC 58.867 38.462 0.00 0.00 0.00 3.01
4657 5351 7.132863 GGTCGATTCCAATAGCTTTGTTAATC 58.867 38.462 0.00 7.48 0.00 1.75
4658 5352 6.601613 TGGTCGATTCCAATAGCTTTGTTAAT 59.398 34.615 0.00 0.00 34.24 1.40
4659 5353 5.941058 TGGTCGATTCCAATAGCTTTGTTAA 59.059 36.000 0.00 0.00 34.24 2.01
4660 5354 5.492895 TGGTCGATTCCAATAGCTTTGTTA 58.507 37.500 0.00 0.00 34.24 2.41
4661 5355 4.331968 TGGTCGATTCCAATAGCTTTGTT 58.668 39.130 0.00 0.00 34.24 2.83
4662 5356 3.941483 CTGGTCGATTCCAATAGCTTTGT 59.059 43.478 0.00 0.00 37.01 2.83
4663 5357 3.242870 GCTGGTCGATTCCAATAGCTTTG 60.243 47.826 0.00 0.00 37.01 2.77
4664 5358 2.945668 GCTGGTCGATTCCAATAGCTTT 59.054 45.455 0.00 0.00 37.01 3.51
4665 5359 2.565841 GCTGGTCGATTCCAATAGCTT 58.434 47.619 0.00 0.00 37.01 3.74
4666 5360 1.202698 GGCTGGTCGATTCCAATAGCT 60.203 52.381 0.00 0.00 37.01 3.32
4667 5361 1.230324 GGCTGGTCGATTCCAATAGC 58.770 55.000 0.00 0.00 37.01 2.97
4668 5362 2.620251 TGGCTGGTCGATTCCAATAG 57.380 50.000 0.00 0.00 37.01 1.73
4669 5363 2.705658 AGATGGCTGGTCGATTCCAATA 59.294 45.455 0.00 0.00 37.01 1.90
4670 5364 1.492176 AGATGGCTGGTCGATTCCAAT 59.508 47.619 0.00 0.00 37.01 3.16
4671 5365 0.911769 AGATGGCTGGTCGATTCCAA 59.088 50.000 0.00 0.00 37.01 3.53
4672 5366 0.911769 AAGATGGCTGGTCGATTCCA 59.088 50.000 0.00 0.00 36.00 3.53
4673 5367 1.587547 GAAGATGGCTGGTCGATTCC 58.412 55.000 0.00 0.00 0.00 3.01
4674 5368 1.134401 TGGAAGATGGCTGGTCGATTC 60.134 52.381 0.00 0.00 0.00 2.52
4675 5369 0.911769 TGGAAGATGGCTGGTCGATT 59.088 50.000 0.00 0.00 0.00 3.34
4676 5370 0.911769 TTGGAAGATGGCTGGTCGAT 59.088 50.000 0.00 0.00 0.00 3.59
4677 5371 0.690192 TTTGGAAGATGGCTGGTCGA 59.310 50.000 0.00 0.00 0.00 4.20
4678 5372 1.755179 ATTTGGAAGATGGCTGGTCG 58.245 50.000 0.00 0.00 0.00 4.79
4679 5373 2.827921 ACAATTTGGAAGATGGCTGGTC 59.172 45.455 0.78 0.00 0.00 4.02
4680 5374 2.893424 ACAATTTGGAAGATGGCTGGT 58.107 42.857 0.78 0.00 0.00 4.00
4681 5375 5.829924 AGTATACAATTTGGAAGATGGCTGG 59.170 40.000 5.50 0.00 0.00 4.85
4682 5376 6.543465 TGAGTATACAATTTGGAAGATGGCTG 59.457 38.462 5.50 0.00 0.00 4.85
4683 5377 6.662755 TGAGTATACAATTTGGAAGATGGCT 58.337 36.000 5.50 0.00 0.00 4.75
4684 5378 6.942532 TGAGTATACAATTTGGAAGATGGC 57.057 37.500 5.50 0.00 0.00 4.40
4685 5379 9.177608 TCTTTGAGTATACAATTTGGAAGATGG 57.822 33.333 5.50 0.00 0.00 3.51
4687 5381 8.897752 GCTCTTTGAGTATACAATTTGGAAGAT 58.102 33.333 5.50 0.00 31.39 2.40
4688 5382 7.882791 TGCTCTTTGAGTATACAATTTGGAAGA 59.117 33.333 5.50 4.24 31.39 2.87
4689 5383 8.044060 TGCTCTTTGAGTATACAATTTGGAAG 57.956 34.615 5.50 0.29 31.39 3.46
4690 5384 7.121168 CCTGCTCTTTGAGTATACAATTTGGAA 59.879 37.037 5.50 0.00 31.39 3.53
4691 5385 6.599244 CCTGCTCTTTGAGTATACAATTTGGA 59.401 38.462 5.50 0.00 31.39 3.53
4692 5386 6.678900 GCCTGCTCTTTGAGTATACAATTTGG 60.679 42.308 5.50 0.00 31.39 3.28
4693 5387 6.094603 AGCCTGCTCTTTGAGTATACAATTTG 59.905 38.462 5.50 0.00 31.39 2.32
4694 5388 6.094603 CAGCCTGCTCTTTGAGTATACAATTT 59.905 38.462 5.50 0.00 31.39 1.82
4695 5389 5.587844 CAGCCTGCTCTTTGAGTATACAATT 59.412 40.000 5.50 0.00 31.39 2.32
4696 5390 5.121811 CAGCCTGCTCTTTGAGTATACAAT 58.878 41.667 5.50 0.00 31.39 2.71
4697 5391 4.507710 CAGCCTGCTCTTTGAGTATACAA 58.492 43.478 5.50 0.00 31.39 2.41
4698 5392 3.679917 GCAGCCTGCTCTTTGAGTATACA 60.680 47.826 10.04 0.00 40.96 2.29
4699 5393 2.869192 GCAGCCTGCTCTTTGAGTATAC 59.131 50.000 10.04 0.00 40.96 1.47
4700 5394 2.501316 TGCAGCCTGCTCTTTGAGTATA 59.499 45.455 18.96 0.00 45.31 1.47
4701 5395 1.280133 TGCAGCCTGCTCTTTGAGTAT 59.720 47.619 18.96 0.00 45.31 2.12
4702 5396 0.686789 TGCAGCCTGCTCTTTGAGTA 59.313 50.000 18.96 0.00 45.31 2.59
4703 5397 0.037877 ATGCAGCCTGCTCTTTGAGT 59.962 50.000 18.96 0.00 45.31 3.41
4704 5398 1.135373 CAATGCAGCCTGCTCTTTGAG 60.135 52.381 18.96 0.00 45.31 3.02
4705 5399 0.885879 CAATGCAGCCTGCTCTTTGA 59.114 50.000 18.96 0.00 45.31 2.69
4706 5400 0.736325 GCAATGCAGCCTGCTCTTTG 60.736 55.000 18.96 18.05 45.31 2.77
4707 5401 1.183030 TGCAATGCAGCCTGCTCTTT 61.183 50.000 18.96 6.28 45.31 2.52
4708 5402 1.183030 TTGCAATGCAGCCTGCTCTT 61.183 50.000 18.96 8.68 45.31 2.85
4709 5403 1.183030 TTTGCAATGCAGCCTGCTCT 61.183 50.000 18.96 2.12 45.31 4.09
4710 5404 0.108329 ATTTGCAATGCAGCCTGCTC 60.108 50.000 18.96 5.17 45.31 4.26
4711 5405 0.323629 AATTTGCAATGCAGCCTGCT 59.676 45.000 18.96 0.14 45.31 4.24
4712 5406 2.012937 TAATTTGCAATGCAGCCTGC 57.987 45.000 10.45 10.45 45.29 4.85
4713 5407 2.792674 CGATAATTTGCAATGCAGCCTG 59.207 45.455 8.31 0.00 40.61 4.85
4714 5408 2.689471 TCGATAATTTGCAATGCAGCCT 59.311 40.909 8.31 0.00 40.61 4.58
4715 5409 3.082698 TCGATAATTTGCAATGCAGCC 57.917 42.857 8.31 0.00 40.61 4.85
4716 5410 4.107622 ACTTCGATAATTTGCAATGCAGC 58.892 39.130 8.31 0.00 40.61 5.25
4717 5411 4.736793 GGACTTCGATAATTTGCAATGCAG 59.263 41.667 8.31 0.00 40.61 4.41
4718 5412 4.439974 GGGACTTCGATAATTTGCAATGCA 60.440 41.667 2.72 2.72 36.47 3.96
4719 5413 4.044426 GGGACTTCGATAATTTGCAATGC 58.956 43.478 0.00 0.00 0.00 3.56
4720 5414 5.505173 AGGGACTTCGATAATTTGCAATG 57.495 39.130 0.00 0.00 27.25 2.82
4736 5430 3.084786 GCAGTGAGCAATAAAAGGGACT 58.915 45.455 0.00 0.00 44.79 3.85
4737 5431 3.494045 GCAGTGAGCAATAAAAGGGAC 57.506 47.619 0.00 0.00 44.79 4.46
4749 5443 2.989166 GTTAATTTTGGCAGCAGTGAGC 59.011 45.455 0.00 0.00 46.19 4.26
4750 5444 3.256631 AGGTTAATTTTGGCAGCAGTGAG 59.743 43.478 0.00 0.00 0.00 3.51
4751 5445 3.230134 AGGTTAATTTTGGCAGCAGTGA 58.770 40.909 0.00 0.00 0.00 3.41
4752 5446 3.665745 AGGTTAATTTTGGCAGCAGTG 57.334 42.857 0.00 0.00 0.00 3.66
4753 5447 3.244181 CCAAGGTTAATTTTGGCAGCAGT 60.244 43.478 7.69 0.00 37.61 4.40
4754 5448 3.006752 TCCAAGGTTAATTTTGGCAGCAG 59.993 43.478 13.35 0.00 42.82 4.24
4755 5449 2.968574 TCCAAGGTTAATTTTGGCAGCA 59.031 40.909 13.35 0.00 42.82 4.41
4756 5450 3.244044 TGTCCAAGGTTAATTTTGGCAGC 60.244 43.478 13.35 8.46 42.82 5.25
4757 5451 4.039124 AGTGTCCAAGGTTAATTTTGGCAG 59.961 41.667 13.35 0.00 42.82 4.85
4758 5452 3.964031 AGTGTCCAAGGTTAATTTTGGCA 59.036 39.130 13.35 11.95 42.82 4.92
4759 5453 4.600692 AGTGTCCAAGGTTAATTTTGGC 57.399 40.909 13.35 10.21 42.82 4.52
4760 5454 6.155475 TGAAGTGTCCAAGGTTAATTTTGG 57.845 37.500 12.40 12.40 44.15 3.28
4761 5455 9.410556 CTATTGAAGTGTCCAAGGTTAATTTTG 57.589 33.333 0.00 0.00 0.00 2.44
4762 5456 9.143155 ACTATTGAAGTGTCCAAGGTTAATTTT 57.857 29.630 0.00 0.00 36.93 1.82
4763 5457 8.706322 ACTATTGAAGTGTCCAAGGTTAATTT 57.294 30.769 0.00 0.00 36.93 1.82
4764 5458 8.576442 CAACTATTGAAGTGTCCAAGGTTAATT 58.424 33.333 0.00 0.00 38.88 1.40
4765 5459 7.724061 ACAACTATTGAAGTGTCCAAGGTTAAT 59.276 33.333 0.00 0.00 38.88 1.40
4766 5460 7.057894 ACAACTATTGAAGTGTCCAAGGTTAA 58.942 34.615 0.00 0.00 38.88 2.01
4767 5461 6.597562 ACAACTATTGAAGTGTCCAAGGTTA 58.402 36.000 0.00 0.00 38.88 2.85
4768 5462 5.445964 ACAACTATTGAAGTGTCCAAGGTT 58.554 37.500 0.00 0.00 38.88 3.50
4769 5463 5.048846 ACAACTATTGAAGTGTCCAAGGT 57.951 39.130 0.00 0.00 38.88 3.50
4770 5464 5.308825 AGACAACTATTGAAGTGTCCAAGG 58.691 41.667 0.00 0.00 38.88 3.61
4771 5465 6.867662 AAGACAACTATTGAAGTGTCCAAG 57.132 37.500 0.00 0.00 38.88 3.61
4772 5466 6.826231 TGAAAGACAACTATTGAAGTGTCCAA 59.174 34.615 0.00 0.00 38.88 3.53
4773 5467 6.353323 TGAAAGACAACTATTGAAGTGTCCA 58.647 36.000 0.00 0.00 38.88 4.02
4774 5468 6.861065 TGAAAGACAACTATTGAAGTGTCC 57.139 37.500 0.00 0.00 38.88 4.02
4775 5469 7.095607 ACGATGAAAGACAACTATTGAAGTGTC 60.096 37.037 0.00 0.00 38.88 3.67
4776 5470 6.706270 ACGATGAAAGACAACTATTGAAGTGT 59.294 34.615 0.00 0.00 38.88 3.55
4777 5471 7.121974 ACGATGAAAGACAACTATTGAAGTG 57.878 36.000 0.00 0.00 38.88 3.16
4778 5472 7.441157 TGAACGATGAAAGACAACTATTGAAGT 59.559 33.333 0.00 0.00 41.49 3.01
4779 5473 7.742089 GTGAACGATGAAAGACAACTATTGAAG 59.258 37.037 0.00 0.00 0.00 3.02
4780 5474 7.307751 GGTGAACGATGAAAGACAACTATTGAA 60.308 37.037 0.00 0.00 0.00 2.69
4781 5475 6.147164 GGTGAACGATGAAAGACAACTATTGA 59.853 38.462 0.00 0.00 0.00 2.57
4782 5476 6.307155 GGTGAACGATGAAAGACAACTATTG 58.693 40.000 0.00 0.00 0.00 1.90
4783 5477 5.411669 GGGTGAACGATGAAAGACAACTATT 59.588 40.000 0.00 0.00 0.00 1.73
4784 5478 4.935808 GGGTGAACGATGAAAGACAACTAT 59.064 41.667 0.00 0.00 0.00 2.12
4785 5479 4.312443 GGGTGAACGATGAAAGACAACTA 58.688 43.478 0.00 0.00 0.00 2.24
4786 5480 3.139077 GGGTGAACGATGAAAGACAACT 58.861 45.455 0.00 0.00 0.00 3.16
4787 5481 2.096417 CGGGTGAACGATGAAAGACAAC 60.096 50.000 0.00 0.00 35.47 3.32
4788 5482 2.139917 CGGGTGAACGATGAAAGACAA 58.860 47.619 0.00 0.00 35.47 3.18
4789 5483 1.341852 TCGGGTGAACGATGAAAGACA 59.658 47.619 0.00 0.00 38.06 3.41
4790 5484 1.993370 CTCGGGTGAACGATGAAAGAC 59.007 52.381 0.00 0.00 42.62 3.01
4791 5485 1.671850 GCTCGGGTGAACGATGAAAGA 60.672 52.381 0.00 0.00 42.62 2.52
4792 5486 0.721718 GCTCGGGTGAACGATGAAAG 59.278 55.000 0.00 0.00 42.62 2.62
4793 5487 0.034198 TGCTCGGGTGAACGATGAAA 59.966 50.000 0.00 0.00 42.62 2.69
4794 5488 0.034198 TTGCTCGGGTGAACGATGAA 59.966 50.000 0.00 0.00 42.62 2.57
4795 5489 0.669318 GTTGCTCGGGTGAACGATGA 60.669 55.000 0.00 0.00 42.62 2.92
4796 5490 0.670546 AGTTGCTCGGGTGAACGATG 60.671 55.000 0.00 0.00 42.62 3.84
4797 5491 0.892755 TAGTTGCTCGGGTGAACGAT 59.107 50.000 0.00 0.00 42.62 3.73
4798 5492 0.675083 TTAGTTGCTCGGGTGAACGA 59.325 50.000 0.00 0.00 41.13 3.85
4799 5493 1.068474 CTTAGTTGCTCGGGTGAACG 58.932 55.000 0.00 0.00 0.00 3.95
4800 5494 0.796927 GCTTAGTTGCTCGGGTGAAC 59.203 55.000 0.00 0.00 0.00 3.18
4801 5495 0.394938 TGCTTAGTTGCTCGGGTGAA 59.605 50.000 0.00 0.00 0.00 3.18
4802 5496 0.613260 ATGCTTAGTTGCTCGGGTGA 59.387 50.000 0.00 0.00 0.00 4.02
4803 5497 1.453155 AATGCTTAGTTGCTCGGGTG 58.547 50.000 0.00 0.00 0.00 4.61
4804 5498 2.200373 AAATGCTTAGTTGCTCGGGT 57.800 45.000 0.00 0.00 0.00 5.28
4805 5499 2.159379 GGAAAATGCTTAGTTGCTCGGG 60.159 50.000 0.00 0.00 0.00 5.14
4806 5500 2.487762 TGGAAAATGCTTAGTTGCTCGG 59.512 45.455 0.00 0.00 0.00 4.63
4807 5501 3.829886 TGGAAAATGCTTAGTTGCTCG 57.170 42.857 0.00 0.00 0.00 5.03
4808 5502 9.801873 TTTTATATGGAAAATGCTTAGTTGCTC 57.198 29.630 0.00 0.00 0.00 4.26
4834 5528 8.507249 GCTTGTGTTGAAGAGATATTAAGTGTT 58.493 33.333 0.00 0.00 0.00 3.32
4835 5529 7.661437 TGCTTGTGTTGAAGAGATATTAAGTGT 59.339 33.333 0.00 0.00 0.00 3.55
4836 5530 8.032952 TGCTTGTGTTGAAGAGATATTAAGTG 57.967 34.615 0.00 0.00 0.00 3.16
4837 5531 8.507249 GTTGCTTGTGTTGAAGAGATATTAAGT 58.493 33.333 0.00 0.00 0.00 2.24
4838 5532 8.506437 TGTTGCTTGTGTTGAAGAGATATTAAG 58.494 33.333 0.00 0.00 0.00 1.85
4839 5533 8.389779 TGTTGCTTGTGTTGAAGAGATATTAA 57.610 30.769 0.00 0.00 0.00 1.40
4840 5534 7.977789 TGTTGCTTGTGTTGAAGAGATATTA 57.022 32.000 0.00 0.00 0.00 0.98
4841 5535 6.882610 TGTTGCTTGTGTTGAAGAGATATT 57.117 33.333 0.00 0.00 0.00 1.28
4842 5536 6.882610 TTGTTGCTTGTGTTGAAGAGATAT 57.117 33.333 0.00 0.00 0.00 1.63
4843 5537 6.691754 TTTGTTGCTTGTGTTGAAGAGATA 57.308 33.333 0.00 0.00 0.00 1.98
4844 5538 5.581126 TTTGTTGCTTGTGTTGAAGAGAT 57.419 34.783 0.00 0.00 0.00 2.75
4845 5539 5.160641 GTTTTGTTGCTTGTGTTGAAGAGA 58.839 37.500 0.00 0.00 0.00 3.10
4846 5540 4.327087 GGTTTTGTTGCTTGTGTTGAAGAG 59.673 41.667 0.00 0.00 0.00 2.85
4847 5541 4.241681 GGTTTTGTTGCTTGTGTTGAAGA 58.758 39.130 0.00 0.00 0.00 2.87
4848 5542 3.993081 TGGTTTTGTTGCTTGTGTTGAAG 59.007 39.130 0.00 0.00 0.00 3.02
4849 5543 3.995199 TGGTTTTGTTGCTTGTGTTGAA 58.005 36.364 0.00 0.00 0.00 2.69
4850 5544 3.667497 TGGTTTTGTTGCTTGTGTTGA 57.333 38.095 0.00 0.00 0.00 3.18
4851 5545 4.378253 CCTTTGGTTTTGTTGCTTGTGTTG 60.378 41.667 0.00 0.00 0.00 3.33
4852 5546 3.750652 CCTTTGGTTTTGTTGCTTGTGTT 59.249 39.130 0.00 0.00 0.00 3.32
4853 5547 3.333804 CCTTTGGTTTTGTTGCTTGTGT 58.666 40.909 0.00 0.00 0.00 3.72
4854 5548 2.095692 GCCTTTGGTTTTGTTGCTTGTG 59.904 45.455 0.00 0.00 0.00 3.33
4855 5549 2.355197 GCCTTTGGTTTTGTTGCTTGT 58.645 42.857 0.00 0.00 0.00 3.16
4856 5550 1.327156 CGCCTTTGGTTTTGTTGCTTG 59.673 47.619 0.00 0.00 0.00 4.01
4857 5551 1.205893 TCGCCTTTGGTTTTGTTGCTT 59.794 42.857 0.00 0.00 0.00 3.91
4858 5552 0.820871 TCGCCTTTGGTTTTGTTGCT 59.179 45.000 0.00 0.00 0.00 3.91
4859 5553 1.326245 GTTCGCCTTTGGTTTTGTTGC 59.674 47.619 0.00 0.00 0.00 4.17
4860 5554 1.930503 GGTTCGCCTTTGGTTTTGTTG 59.069 47.619 0.00 0.00 0.00 3.33
4861 5555 2.303163 GGTTCGCCTTTGGTTTTGTT 57.697 45.000 0.00 0.00 0.00 2.83
4872 5566 5.467670 ACAAACAGAATTGAAGGTTCGCCT 61.468 41.667 0.00 0.00 40.49 5.52
4873 5567 3.243401 ACAAACAGAATTGAAGGTTCGCC 60.243 43.478 0.00 0.00 34.38 5.54
4874 5568 3.964909 ACAAACAGAATTGAAGGTTCGC 58.035 40.909 0.00 0.00 34.38 4.70
4875 5569 9.672086 TTTATAACAAACAGAATTGAAGGTTCG 57.328 29.630 0.00 0.00 34.38 3.95
4907 5601 9.408648 CCAGGATAGAATTTTGGTTACTAATGT 57.591 33.333 0.00 0.00 0.00 2.71
4908 5602 9.627123 TCCAGGATAGAATTTTGGTTACTAATG 57.373 33.333 0.00 0.00 0.00 1.90
4909 5603 9.853177 CTCCAGGATAGAATTTTGGTTACTAAT 57.147 33.333 0.00 0.00 0.00 1.73
4910 5604 7.773690 GCTCCAGGATAGAATTTTGGTTACTAA 59.226 37.037 0.00 0.00 0.00 2.24
4911 5605 7.092623 TGCTCCAGGATAGAATTTTGGTTACTA 60.093 37.037 0.00 0.00 0.00 1.82
4912 5606 6.122964 GCTCCAGGATAGAATTTTGGTTACT 58.877 40.000 0.00 0.00 0.00 2.24
4913 5607 5.885912 TGCTCCAGGATAGAATTTTGGTTAC 59.114 40.000 0.00 0.00 0.00 2.50
4914 5608 5.885912 GTGCTCCAGGATAGAATTTTGGTTA 59.114 40.000 0.00 0.00 0.00 2.85
4915 5609 4.706962 GTGCTCCAGGATAGAATTTTGGTT 59.293 41.667 0.00 0.00 0.00 3.67
4916 5610 4.018050 AGTGCTCCAGGATAGAATTTTGGT 60.018 41.667 0.00 0.00 0.00 3.67
4917 5611 4.530875 AGTGCTCCAGGATAGAATTTTGG 58.469 43.478 0.00 0.00 0.00 3.28
4918 5612 5.188434 TGAGTGCTCCAGGATAGAATTTTG 58.812 41.667 0.00 0.00 0.00 2.44
4919 5613 5.441718 TGAGTGCTCCAGGATAGAATTTT 57.558 39.130 0.00 0.00 0.00 1.82
4920 5614 5.045286 AGTTGAGTGCTCCAGGATAGAATTT 60.045 40.000 0.00 0.00 0.00 1.82
4921 5615 4.472833 AGTTGAGTGCTCCAGGATAGAATT 59.527 41.667 0.00 0.00 0.00 2.17
4922 5616 4.036518 AGTTGAGTGCTCCAGGATAGAAT 58.963 43.478 0.00 0.00 0.00 2.40
4923 5617 3.445008 AGTTGAGTGCTCCAGGATAGAA 58.555 45.455 0.00 0.00 0.00 2.10
4924 5618 3.027412 GAGTTGAGTGCTCCAGGATAGA 58.973 50.000 0.00 0.00 0.00 1.98
4925 5619 3.451141 GAGTTGAGTGCTCCAGGATAG 57.549 52.381 0.00 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.