Multiple sequence alignment - TraesCS2D01G371000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G371000 chr2D 100.000 5771 0 0 1 5771 475085868 475080098 0.000000e+00 10658.0
1 TraesCS2D01G371000 chr2A 96.431 3418 88 9 2369 5771 617641440 617638042 0.000000e+00 5605.0
2 TraesCS2D01G371000 chr2A 92.098 1063 45 19 880 1912 617642703 617641650 0.000000e+00 1461.0
3 TraesCS2D01G371000 chr2A 91.093 842 31 17 1 828 617643505 617642694 0.000000e+00 1099.0
4 TraesCS2D01G371000 chr2A 90.308 227 17 3 1988 2213 617641648 617641426 5.660000e-75 292.0
5 TraesCS2D01G371000 chr2A 88.060 134 16 0 4894 5027 141506316 141506449 5.990000e-35 159.0
6 TraesCS2D01G371000 chr2B 93.234 1271 61 6 2374 3636 556194054 556192801 0.000000e+00 1847.0
7 TraesCS2D01G371000 chr2B 89.991 1099 48 26 3920 4979 556191221 556190146 0.000000e+00 1363.0
8 TraesCS2D01G371000 chr2B 89.067 1061 42 24 866 1912 556195241 556194241 0.000000e+00 1249.0
9 TraesCS2D01G371000 chr2B 92.710 727 50 2 5045 5771 556190134 556189411 0.000000e+00 1046.0
10 TraesCS2D01G371000 chr2B 88.439 865 45 19 1 842 556196060 556195228 0.000000e+00 992.0
11 TraesCS2D01G371000 chr2B 88.406 138 13 3 4892 5027 141562166 141562302 4.630000e-36 163.0
12 TraesCS2D01G371000 chr2B 87.591 137 15 2 4896 5030 601696142 601696006 2.150000e-34 158.0
13 TraesCS2D01G371000 chr2B 90.741 54 3 2 1985 2038 556194242 556194191 2.880000e-08 71.3
14 TraesCS2D01G371000 chr7A 85.439 570 52 13 3857 4413 108869406 108868855 1.090000e-156 564.0
15 TraesCS2D01G371000 chr7A 87.912 364 24 11 2823 3181 108869831 108869483 1.500000e-110 411.0
16 TraesCS2D01G371000 chr5A 85.166 573 54 13 3854 4413 666111533 666112087 5.050000e-155 558.0
17 TraesCS2D01G371000 chr5A 87.912 364 24 11 2823 3181 666111111 666111459 1.500000e-110 411.0
18 TraesCS2D01G371000 chr1A 81.565 575 58 15 3857 4416 9750500 9749959 1.150000e-116 431.0
19 TraesCS2D01G371000 chr5B 81.469 572 59 17 3857 4413 430288222 430287683 5.340000e-115 425.0
20 TraesCS2D01G371000 chr5B 93.333 150 8 2 2967 3116 430288737 430288590 2.710000e-53 220.0
21 TraesCS2D01G371000 chr6A 87.399 373 36 9 2823 3187 97773734 97773365 8.940000e-113 418.0
22 TraesCS2D01G371000 chr6A 78.669 586 57 26 3857 4407 97773292 97772740 1.550000e-85 327.0
23 TraesCS2D01G371000 chr5D 87.569 362 29 7 2823 3181 557974448 557974796 6.960000e-109 405.0
24 TraesCS2D01G371000 chr5D 97.701 174 2 2 2210 2383 293426830 293427001 1.220000e-76 298.0
25 TraesCS2D01G371000 chr5D 99.387 163 1 0 2213 2375 127452142 127451980 4.370000e-76 296.0
26 TraesCS2D01G371000 chr5D 88.142 253 22 3 3854 4098 557974870 557975122 1.570000e-75 294.0
27 TraesCS2D01G371000 chr5D 83.643 269 36 4 4150 4413 557975137 557975402 4.470000e-61 246.0
28 TraesCS2D01G371000 chr1D 85.445 371 27 13 2823 3181 451051293 451050938 1.530000e-95 361.0
29 TraesCS2D01G371000 chr1D 88.000 250 21 4 3857 4098 451050861 451050613 2.630000e-73 287.0
30 TraesCS2D01G371000 chr1D 93.684 190 7 5 2213 2401 126223342 126223527 4.400000e-71 279.0
31 TraesCS2D01G371000 chr1D 85.502 269 31 4 4150 4413 451050598 451050333 2.050000e-69 274.0
32 TraesCS2D01G371000 chr1D 88.489 139 15 1 4889 5027 7349697 7349834 3.580000e-37 167.0
33 TraesCS2D01G371000 chr7D 100.000 165 0 0 2213 2377 363554708 363554544 7.260000e-79 305.0
34 TraesCS2D01G371000 chr7D 99.390 164 1 0 2212 2375 224070724 224070887 1.220000e-76 298.0
35 TraesCS2D01G371000 chr7D 98.773 163 2 0 2213 2375 121683292 121683130 2.030000e-74 291.0
36 TraesCS2D01G371000 chr7D 96.512 172 4 1 2212 2381 595914694 595914523 3.400000e-72 283.0
37 TraesCS2D01G371000 chr4D 96.175 183 4 3 2210 2390 468208641 468208822 4.370000e-76 296.0
38 TraesCS2D01G371000 chr6D 96.491 171 6 0 2206 2376 55895720 55895890 3.400000e-72 283.0
39 TraesCS2D01G371000 chr6D 95.000 40 2 0 4601 4640 431056147 431056186 4.830000e-06 63.9
40 TraesCS2D01G371000 chr4B 88.571 140 14 2 4893 5030 22464608 22464747 9.940000e-38 169.0
41 TraesCS2D01G371000 chr4A 88.321 137 14 2 4896 5030 30742886 30742750 4.630000e-36 163.0
42 TraesCS2D01G371000 chr3D 87.143 140 16 2 4896 5034 535782670 535782532 2.150000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G371000 chr2D 475080098 475085868 5770 True 10658.000000 10658 100.000000 1 5771 1 chr2D.!!$R1 5770
1 TraesCS2D01G371000 chr2A 617638042 617643505 5463 True 2114.250000 5605 92.482500 1 5771 4 chr2A.!!$R1 5770
2 TraesCS2D01G371000 chr2B 556189411 556196060 6649 True 1094.716667 1847 90.697000 1 5771 6 chr2B.!!$R2 5770
3 TraesCS2D01G371000 chr7A 108868855 108869831 976 True 487.500000 564 86.675500 2823 4413 2 chr7A.!!$R1 1590
4 TraesCS2D01G371000 chr5A 666111111 666112087 976 False 484.500000 558 86.539000 2823 4413 2 chr5A.!!$F1 1590
5 TraesCS2D01G371000 chr1A 9749959 9750500 541 True 431.000000 431 81.565000 3857 4416 1 chr1A.!!$R1 559
6 TraesCS2D01G371000 chr5B 430287683 430288737 1054 True 322.500000 425 87.401000 2967 4413 2 chr5B.!!$R1 1446
7 TraesCS2D01G371000 chr6A 97772740 97773734 994 True 372.500000 418 83.034000 2823 4407 2 chr6A.!!$R1 1584
8 TraesCS2D01G371000 chr5D 557974448 557975402 954 False 315.000000 405 86.451333 2823 4413 3 chr5D.!!$F2 1590
9 TraesCS2D01G371000 chr1D 451050333 451051293 960 True 307.333333 361 86.315667 2823 4413 3 chr1D.!!$R1 1590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 86 0.106015 ACCTGCTTCCTTTGCCTTGT 60.106 50.0 0.00 0.00 0.00 3.16 F
883 939 0.107654 ATGAAGAACCGTAGCCAGGC 60.108 55.0 1.84 1.84 0.00 4.85 F
1583 1648 0.108615 CTTAGTGGGAGACTGTGCGG 60.109 60.0 0.00 0.00 35.96 5.69 F
2276 2363 1.108776 GGTGGACTACATACGGAGCA 58.891 55.0 0.00 0.00 0.00 4.26 F
3269 3615 0.767998 GATCTCCCTGGTGGAATCCC 59.232 60.0 0.00 0.00 44.57 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1800 1.004628 TGCTCCACACAATGTGCCTAT 59.995 47.619 14.01 0.0 46.51 2.57 R
2439 2530 1.071542 TGGTCACCTGCAAAGAATCGA 59.928 47.619 0.00 0.0 0.00 3.59 R
2441 2532 3.149196 TCTTGGTCACCTGCAAAGAATC 58.851 45.455 0.00 0.0 0.00 2.52 R
3733 5079 3.671716 AGGTTCGTAGCAACCCTAAAAG 58.328 45.455 0.24 0.0 46.39 2.27 R
4815 6576 0.464373 AGTGCACAACTCACACCCAG 60.464 55.000 21.04 0.0 31.64 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 25 2.030007 GCTGTTAAATGCTTGGCTGTCA 60.030 45.455 0.00 0.00 0.00 3.58
83 86 0.106015 ACCTGCTTCCTTTGCCTTGT 60.106 50.000 0.00 0.00 0.00 3.16
98 101 1.406614 CCTTGTCAGGGATCAGACTGC 60.407 57.143 11.76 6.38 36.36 4.40
152 155 1.673168 AAGAGAATCCAGCGGCATTC 58.327 50.000 1.45 3.00 33.66 2.67
210 213 0.687354 GGCTGAGAAGTCCAACCTGA 59.313 55.000 0.00 0.00 0.00 3.86
224 227 2.996621 CAACCTGAAAGTTAGAGCTCCG 59.003 50.000 10.93 0.00 0.00 4.63
259 268 4.039609 AGAATCCAAACCAAAGCTTTGAGG 59.960 41.667 35.25 28.00 40.55 3.86
264 273 2.278332 ACCAAAGCTTTGAGGTCCTC 57.722 50.000 35.25 12.40 40.55 3.71
307 317 3.460857 ACAGAGATTACCCTGATTCGC 57.539 47.619 0.00 0.00 34.65 4.70
308 318 2.766263 ACAGAGATTACCCTGATTCGCA 59.234 45.455 0.00 0.00 34.65 5.10
309 319 3.126831 CAGAGATTACCCTGATTCGCAC 58.873 50.000 0.00 0.00 32.37 5.34
310 320 3.034635 AGAGATTACCCTGATTCGCACT 58.965 45.455 0.00 0.00 0.00 4.40
311 321 3.068873 AGAGATTACCCTGATTCGCACTC 59.931 47.826 0.00 0.00 0.00 3.51
312 322 2.128035 GATTACCCTGATTCGCACTCG 58.872 52.381 0.00 0.00 0.00 4.18
316 326 2.456119 CCTGATTCGCACTCGCACC 61.456 63.158 0.00 0.00 38.40 5.01
346 356 9.231297 CACCTTGTTTCTCCTATAAATTCTTCA 57.769 33.333 0.00 0.00 0.00 3.02
518 534 1.299541 AGACGAGCTGGTTTGTTGTG 58.700 50.000 1.83 0.00 0.00 3.33
608 629 3.123804 CGTTCTTAACTGTGCAGTGACT 58.876 45.455 5.53 0.00 41.58 3.41
609 630 3.060272 CGTTCTTAACTGTGCAGTGACTG 60.060 47.826 8.52 8.52 41.58 3.51
610 631 3.819564 TCTTAACTGTGCAGTGACTGT 57.180 42.857 14.82 0.00 41.58 3.55
611 632 4.137116 TCTTAACTGTGCAGTGACTGTT 57.863 40.909 14.82 16.20 41.58 3.16
612 633 5.270893 TCTTAACTGTGCAGTGACTGTTA 57.729 39.130 14.82 14.90 41.58 2.41
613 634 5.853936 TCTTAACTGTGCAGTGACTGTTAT 58.146 37.500 14.82 0.00 41.58 1.89
614 635 6.288294 TCTTAACTGTGCAGTGACTGTTATT 58.712 36.000 14.82 4.96 41.58 1.40
615 636 6.765989 TCTTAACTGTGCAGTGACTGTTATTT 59.234 34.615 14.82 4.45 41.58 1.40
616 637 4.818534 ACTGTGCAGTGACTGTTATTTG 57.181 40.909 14.82 3.14 40.75 2.32
617 638 4.450976 ACTGTGCAGTGACTGTTATTTGA 58.549 39.130 14.82 0.00 40.75 2.69
618 639 4.273480 ACTGTGCAGTGACTGTTATTTGAC 59.727 41.667 14.82 0.00 40.75 3.18
619 640 3.563808 TGTGCAGTGACTGTTATTTGACC 59.436 43.478 14.82 0.00 33.43 4.02
620 641 3.815401 GTGCAGTGACTGTTATTTGACCT 59.185 43.478 14.82 0.00 33.43 3.85
621 642 4.275936 GTGCAGTGACTGTTATTTGACCTT 59.724 41.667 14.82 0.00 33.43 3.50
622 643 4.887071 TGCAGTGACTGTTATTTGACCTTT 59.113 37.500 14.82 0.00 33.43 3.11
623 644 5.359576 TGCAGTGACTGTTATTTGACCTTTT 59.640 36.000 14.82 0.00 33.43 2.27
624 645 6.127479 TGCAGTGACTGTTATTTGACCTTTTT 60.127 34.615 14.82 0.00 33.43 1.94
672 701 2.404265 TGTTGCGAATGTTGCTCTTG 57.596 45.000 0.00 0.00 0.00 3.02
792 824 1.133513 TGCAAGAGCTTTTGGGGAAGA 60.134 47.619 17.82 0.00 42.74 2.87
831 887 4.039092 GGGGCAGGCAGAGCTGAA 62.039 66.667 0.85 0.00 0.00 3.02
832 888 2.438075 GGGCAGGCAGAGCTGAAG 60.438 66.667 0.85 0.00 0.00 3.02
833 889 2.667418 GGCAGGCAGAGCTGAAGA 59.333 61.111 0.85 0.00 0.00 2.87
834 890 1.002868 GGCAGGCAGAGCTGAAGAA 60.003 57.895 0.85 0.00 0.00 2.52
835 891 1.304509 GGCAGGCAGAGCTGAAGAAC 61.305 60.000 0.85 0.00 0.00 3.01
836 892 1.304509 GCAGGCAGAGCTGAAGAACC 61.305 60.000 0.85 0.00 0.00 3.62
837 893 1.018226 CAGGCAGAGCTGAAGAACCG 61.018 60.000 0.85 0.00 0.00 4.44
838 894 1.004440 GGCAGAGCTGAAGAACCGT 60.004 57.895 0.85 0.00 0.00 4.83
839 895 0.246635 GGCAGAGCTGAAGAACCGTA 59.753 55.000 0.85 0.00 0.00 4.02
840 896 1.634702 GCAGAGCTGAAGAACCGTAG 58.365 55.000 0.85 0.00 0.00 3.51
841 897 1.634702 CAGAGCTGAAGAACCGTAGC 58.365 55.000 0.00 0.00 36.45 3.58
843 899 1.896465 AGAGCTGAAGAACCGTAGCTT 59.104 47.619 0.00 0.00 45.76 3.74
844 900 2.300437 AGAGCTGAAGAACCGTAGCTTT 59.700 45.455 0.00 0.00 45.76 3.51
845 901 3.067833 GAGCTGAAGAACCGTAGCTTTT 58.932 45.455 0.00 0.00 45.76 2.27
846 902 3.477530 AGCTGAAGAACCGTAGCTTTTT 58.522 40.909 0.00 0.00 43.49 1.94
877 933 7.421530 TTTTTGAGAAGATGAAGAACCGTAG 57.578 36.000 0.00 0.00 0.00 3.51
878 934 4.111375 TGAGAAGATGAAGAACCGTAGC 57.889 45.455 0.00 0.00 0.00 3.58
879 935 3.119101 TGAGAAGATGAAGAACCGTAGCC 60.119 47.826 0.00 0.00 0.00 3.93
880 936 2.832129 AGAAGATGAAGAACCGTAGCCA 59.168 45.455 0.00 0.00 0.00 4.75
881 937 2.969628 AGATGAAGAACCGTAGCCAG 57.030 50.000 0.00 0.00 0.00 4.85
882 938 1.482593 AGATGAAGAACCGTAGCCAGG 59.517 52.381 0.00 0.00 0.00 4.45
883 939 0.107654 ATGAAGAACCGTAGCCAGGC 60.108 55.000 1.84 1.84 0.00 4.85
884 940 1.295423 GAAGAACCGTAGCCAGGCA 59.705 57.895 15.80 0.00 0.00 4.75
885 941 0.741221 GAAGAACCGTAGCCAGGCAG 60.741 60.000 15.80 4.26 0.00 4.85
886 942 1.192146 AAGAACCGTAGCCAGGCAGA 61.192 55.000 15.80 0.00 0.00 4.26
887 943 1.153549 GAACCGTAGCCAGGCAGAG 60.154 63.158 15.80 3.46 0.00 3.35
888 944 3.316573 AACCGTAGCCAGGCAGAGC 62.317 63.158 15.80 0.00 0.00 4.09
928 985 2.589540 CTGGCGCCAGGGATACAA 59.410 61.111 42.81 13.00 40.17 2.41
929 986 1.077787 CTGGCGCCAGGGATACAAA 60.078 57.895 42.81 12.20 40.17 2.83
990 1047 0.682855 ACTGCTCTTCCTCTCTCCCG 60.683 60.000 0.00 0.00 0.00 5.14
1041 1099 1.859302 CCTACTCTGGCTTGGTCTCT 58.141 55.000 0.00 0.00 0.00 3.10
1116 1174 2.699496 CTAGCCCCTCCACCTCCT 59.301 66.667 0.00 0.00 0.00 3.69
1279 1337 1.135689 CAAGCGCACCAATAACTCCAC 60.136 52.381 11.47 0.00 0.00 4.02
1313 1371 3.519930 GAGGCGGACGAGGAGGTC 61.520 72.222 0.00 0.00 36.18 3.85
1364 1422 4.070552 AAGGCGCTGGACCTCGTC 62.071 66.667 7.64 3.63 36.14 4.20
1550 1608 1.446966 GGTGAGCCTTCGAGTCTGC 60.447 63.158 0.00 0.00 0.00 4.26
1553 1611 0.610174 TGAGCCTTCGAGTCTGCAAT 59.390 50.000 0.00 0.00 0.00 3.56
1557 1622 2.234908 AGCCTTCGAGTCTGCAATTAGT 59.765 45.455 0.00 0.00 0.00 2.24
1573 1638 5.116180 CAATTAGTTCGATGCTTAGTGGGA 58.884 41.667 0.00 0.00 0.00 4.37
1579 1644 1.478510 CGATGCTTAGTGGGAGACTGT 59.521 52.381 0.00 0.00 35.96 3.55
1581 1646 0.321671 TGCTTAGTGGGAGACTGTGC 59.678 55.000 0.00 0.00 35.96 4.57
1582 1647 0.737715 GCTTAGTGGGAGACTGTGCG 60.738 60.000 0.00 0.00 35.96 5.34
1583 1648 0.108615 CTTAGTGGGAGACTGTGCGG 60.109 60.000 0.00 0.00 35.96 5.69
1586 1651 2.847234 TGGGAGACTGTGCGGGTT 60.847 61.111 0.00 0.00 0.00 4.11
1597 1662 3.243636 ACTGTGCGGGTTATACGATTAGG 60.244 47.826 0.00 0.00 0.00 2.69
1627 1692 2.872732 ACACTTCGGTAGTTCCTCTCA 58.127 47.619 0.00 0.00 33.85 3.27
1675 1750 5.289595 TGTGGCGCTAGATAATAAAGTGAG 58.710 41.667 7.64 0.00 0.00 3.51
1725 1800 7.896383 ATAGAGTTTTAGCCATGCCAAAATA 57.104 32.000 0.00 0.00 0.00 1.40
1778 1858 4.377021 TGTTCAATGCAGACTAGTCGTTT 58.623 39.130 17.07 6.97 34.09 3.60
1807 1887 2.606308 GCTAACGTCGTTCAAGGACTCA 60.606 50.000 15.06 0.00 31.33 3.41
1808 1888 2.135664 AACGTCGTTCAAGGACTCAG 57.864 50.000 4.40 0.00 31.33 3.35
1809 1889 1.315690 ACGTCGTTCAAGGACTCAGA 58.684 50.000 8.54 0.00 31.33 3.27
1825 1905 6.561838 AGGACTCAGAAATATGGGAGATTGAT 59.438 38.462 0.00 0.00 0.00 2.57
1871 1957 8.768019 TCTATGTTGCAATTTCATCTCTATTCG 58.232 33.333 0.59 0.00 0.00 3.34
1894 1980 8.534333 TCGTAAAATATCATAGAACCATGAGC 57.466 34.615 0.00 0.00 38.30 4.26
1912 1998 6.372659 CCATGAGCCATGACCATACTAAATAC 59.627 42.308 14.52 0.00 43.81 1.89
1913 1999 6.747414 TGAGCCATGACCATACTAAATACT 57.253 37.500 0.00 0.00 0.00 2.12
1914 2000 6.759272 TGAGCCATGACCATACTAAATACTC 58.241 40.000 0.00 0.00 0.00 2.59
1915 2001 6.326323 TGAGCCATGACCATACTAAATACTCA 59.674 38.462 0.00 0.00 0.00 3.41
1916 2002 7.136822 AGCCATGACCATACTAAATACTCAA 57.863 36.000 0.00 0.00 0.00 3.02
1917 2003 6.992715 AGCCATGACCATACTAAATACTCAAC 59.007 38.462 0.00 0.00 0.00 3.18
1918 2004 6.992715 GCCATGACCATACTAAATACTCAACT 59.007 38.462 0.00 0.00 0.00 3.16
1919 2005 7.041780 GCCATGACCATACTAAATACTCAACTG 60.042 40.741 0.00 0.00 0.00 3.16
1920 2006 7.442364 CCATGACCATACTAAATACTCAACTGG 59.558 40.741 0.00 0.00 0.00 4.00
1921 2007 6.346096 TGACCATACTAAATACTCAACTGGC 58.654 40.000 0.00 0.00 0.00 4.85
1922 2008 6.070481 TGACCATACTAAATACTCAACTGGCA 60.070 38.462 0.00 0.00 0.00 4.92
1923 2009 6.717289 ACCATACTAAATACTCAACTGGCAA 58.283 36.000 0.00 0.00 0.00 4.52
1924 2010 6.598064 ACCATACTAAATACTCAACTGGCAAC 59.402 38.462 0.00 0.00 0.00 4.17
1925 2011 6.823689 CCATACTAAATACTCAACTGGCAACT 59.176 38.462 0.00 0.00 37.61 3.16
1926 2012 7.201644 CCATACTAAATACTCAACTGGCAACTG 60.202 40.741 0.00 0.00 42.06 3.16
1927 2013 3.923017 AAATACTCAACTGGCAACTGC 57.077 42.857 0.00 0.00 39.52 4.40
1938 2024 3.322514 GCAACTGCCTTACACCTGA 57.677 52.632 0.00 0.00 34.31 3.86
1939 2025 1.604604 GCAACTGCCTTACACCTGAA 58.395 50.000 0.00 0.00 34.31 3.02
1940 2026 1.266989 GCAACTGCCTTACACCTGAAC 59.733 52.381 0.00 0.00 34.31 3.18
1941 2027 2.851195 CAACTGCCTTACACCTGAACT 58.149 47.619 0.00 0.00 0.00 3.01
1942 2028 3.214328 CAACTGCCTTACACCTGAACTT 58.786 45.455 0.00 0.00 0.00 2.66
1943 2029 2.851195 ACTGCCTTACACCTGAACTTG 58.149 47.619 0.00 0.00 0.00 3.16
1944 2030 1.537202 CTGCCTTACACCTGAACTTGC 59.463 52.381 0.00 0.00 0.00 4.01
1945 2031 1.133945 TGCCTTACACCTGAACTTGCA 60.134 47.619 0.00 0.00 0.00 4.08
1946 2032 1.266989 GCCTTACACCTGAACTTGCAC 59.733 52.381 0.00 0.00 0.00 4.57
1947 2033 2.571212 CCTTACACCTGAACTTGCACA 58.429 47.619 0.00 0.00 0.00 4.57
1948 2034 2.948979 CCTTACACCTGAACTTGCACAA 59.051 45.455 0.00 0.00 0.00 3.33
1949 2035 3.569701 CCTTACACCTGAACTTGCACAAT 59.430 43.478 0.00 0.00 0.00 2.71
1950 2036 4.759693 CCTTACACCTGAACTTGCACAATA 59.240 41.667 0.00 0.00 0.00 1.90
1951 2037 5.415701 CCTTACACCTGAACTTGCACAATAT 59.584 40.000 0.00 0.00 0.00 1.28
1952 2038 6.071952 CCTTACACCTGAACTTGCACAATATT 60.072 38.462 0.00 0.00 0.00 1.28
1953 2039 7.120579 CCTTACACCTGAACTTGCACAATATTA 59.879 37.037 0.00 0.00 0.00 0.98
1954 2040 8.574251 TTACACCTGAACTTGCACAATATTAT 57.426 30.769 0.00 0.00 0.00 1.28
1955 2041 7.466746 ACACCTGAACTTGCACAATATTATT 57.533 32.000 0.00 0.00 0.00 1.40
1956 2042 7.538575 ACACCTGAACTTGCACAATATTATTC 58.461 34.615 0.00 0.00 0.00 1.75
1957 2043 6.688385 CACCTGAACTTGCACAATATTATTCG 59.312 38.462 0.00 0.00 0.00 3.34
1958 2044 6.374333 ACCTGAACTTGCACAATATTATTCGT 59.626 34.615 0.00 0.00 0.00 3.85
1959 2045 7.094377 ACCTGAACTTGCACAATATTATTCGTT 60.094 33.333 0.00 0.00 0.00 3.85
1960 2046 7.754924 CCTGAACTTGCACAATATTATTCGTTT 59.245 33.333 0.00 0.00 0.00 3.60
1961 2047 8.446489 TGAACTTGCACAATATTATTCGTTTG 57.554 30.769 0.00 0.00 0.00 2.93
1962 2048 8.079203 TGAACTTGCACAATATTATTCGTTTGT 58.921 29.630 0.00 0.00 32.76 2.83
1963 2049 8.810652 AACTTGCACAATATTATTCGTTTGTT 57.189 26.923 0.00 0.00 30.23 2.83
1964 2050 8.226543 ACTTGCACAATATTATTCGTTTGTTG 57.773 30.769 0.00 0.00 30.23 3.33
1965 2051 8.079203 ACTTGCACAATATTATTCGTTTGTTGA 58.921 29.630 0.00 0.00 30.23 3.18
1966 2052 8.803201 TTGCACAATATTATTCGTTTGTTGAA 57.197 26.923 0.00 0.00 30.23 2.69
1967 2053 8.803201 TGCACAATATTATTCGTTTGTTGAAA 57.197 26.923 0.00 0.00 30.23 2.69
1968 2054 9.416794 TGCACAATATTATTCGTTTGTTGAAAT 57.583 25.926 0.00 0.00 30.23 2.17
1969 2055 9.674208 GCACAATATTATTCGTTTGTTGAAATG 57.326 29.630 0.00 0.00 30.23 2.32
1983 2069 8.830201 TTTGTTGAAATGAACAAATATGGGAG 57.170 30.769 6.79 0.00 46.12 4.30
1984 2070 7.537596 TGTTGAAATGAACAAATATGGGAGT 57.462 32.000 0.00 0.00 32.84 3.85
1985 2071 8.642935 TGTTGAAATGAACAAATATGGGAGTA 57.357 30.769 0.00 0.00 32.84 2.59
2079 2166 8.321353 TGTACTAATGAAGGTTCTGTTGATCAT 58.679 33.333 0.00 0.00 0.00 2.45
2087 2174 7.882791 TGAAGGTTCTGTTGATCATAAGCTAAA 59.117 33.333 0.00 0.00 39.07 1.85
2089 2176 6.599638 AGGTTCTGTTGATCATAAGCTAAACC 59.400 38.462 13.85 13.85 38.53 3.27
2110 2197 8.706322 AAACCTACCTTTTTGTTGATCACTAT 57.294 30.769 0.00 0.00 0.00 2.12
2148 2235 5.283294 TGTTTGATCACAATTCACAAGCTG 58.717 37.500 0.00 0.00 35.85 4.24
2166 2253 2.741878 GCTGGGCTCATCTTTACGCTTA 60.742 50.000 0.00 0.00 0.00 3.09
2218 2305 9.495572 CTTGATGGAACTATAAATTCTACTCCC 57.504 37.037 0.00 0.00 0.00 4.30
2219 2306 8.798975 TGATGGAACTATAAATTCTACTCCCT 57.201 34.615 0.00 0.00 0.00 4.20
2220 2307 8.871125 TGATGGAACTATAAATTCTACTCCCTC 58.129 37.037 0.00 0.00 0.00 4.30
2221 2308 7.613551 TGGAACTATAAATTCTACTCCCTCC 57.386 40.000 0.00 0.00 0.00 4.30
2222 2309 6.267014 TGGAACTATAAATTCTACTCCCTCCG 59.733 42.308 0.00 0.00 0.00 4.63
2223 2310 6.267242 GGAACTATAAATTCTACTCCCTCCGT 59.733 42.308 0.00 0.00 0.00 4.69
2224 2311 7.201983 GGAACTATAAATTCTACTCCCTCCGTT 60.202 40.741 0.00 0.00 0.00 4.44
2225 2312 7.287512 ACTATAAATTCTACTCCCTCCGTTC 57.712 40.000 0.00 0.00 0.00 3.95
2226 2313 3.908643 AAATTCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
2227 2314 2.850695 ATTCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
2228 2315 3.967467 ATTCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
2229 2316 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
2230 2317 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2231 2318 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2232 2319 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2233 2320 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
2234 2321 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
2235 2322 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
2236 2323 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2237 2324 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2238 2325 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2239 2326 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2240 2327 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2241 2328 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2242 2329 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
2243 2330 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2272 2359 3.984508 CACTAGGTGGACTACATACGG 57.015 52.381 0.00 0.00 0.00 4.02
2273 2360 3.548770 CACTAGGTGGACTACATACGGA 58.451 50.000 0.00 0.00 0.00 4.69
2274 2361 3.564644 CACTAGGTGGACTACATACGGAG 59.435 52.174 0.00 0.00 0.00 4.63
2275 2362 1.400737 AGGTGGACTACATACGGAGC 58.599 55.000 0.00 0.00 0.00 4.70
2276 2363 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
2277 2364 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.00 0.00 3.91
2278 2365 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.00 0.00 3.68
2279 2366 3.431766 GGTGGACTACATACGGAGCAAAT 60.432 47.826 0.00 0.00 0.00 2.32
2280 2367 4.189231 GTGGACTACATACGGAGCAAATT 58.811 43.478 0.00 0.00 0.00 1.82
2281 2368 4.034048 GTGGACTACATACGGAGCAAATTG 59.966 45.833 0.00 0.00 0.00 2.32
2282 2369 4.081365 TGGACTACATACGGAGCAAATTGA 60.081 41.667 0.00 0.00 0.00 2.57
2283 2370 4.873827 GGACTACATACGGAGCAAATTGAA 59.126 41.667 0.00 0.00 0.00 2.69
2284 2371 5.527582 GGACTACATACGGAGCAAATTGAAT 59.472 40.000 0.00 0.00 0.00 2.57
2285 2372 6.363577 ACTACATACGGAGCAAATTGAATG 57.636 37.500 0.00 0.00 0.00 2.67
2286 2373 6.112734 ACTACATACGGAGCAAATTGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2287 2374 5.895636 ACATACGGAGCAAATTGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2288 2375 6.455360 ACATACGGAGCAAATTGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2289 2376 6.498304 ACATACGGAGCAAATTGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2290 2377 6.319658 ACATACGGAGCAAATTGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2291 2378 7.498900 ACATACGGAGCAAATTGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2292 2379 6.124088 ACGGAGCAAATTGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2293 2380 5.647658 ACGGAGCAAATTGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2294 2381 5.967674 CGGAGCAAATTGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
2295 2382 6.183360 CGGAGCAAATTGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
2296 2383 7.542025 GGAGCAAATTGAATGAATCTACACTT 58.458 34.615 0.00 0.00 0.00 3.16
2297 2384 8.677300 GGAGCAAATTGAATGAATCTACACTTA 58.323 33.333 0.00 0.00 0.00 2.24
2319 2406 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
2324 2411 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
2325 2412 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
2326 2413 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
2327 2414 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
2328 2415 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
2329 2416 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
2330 2417 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
2331 2418 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
2332 2419 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
2333 2420 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
2334 2421 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
2335 2422 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
2336 2423 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
2337 2424 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
2338 2425 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
2339 2426 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
2340 2427 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
2341 2428 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
2342 2429 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
2343 2430 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
2344 2431 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
2345 2432 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
2346 2433 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
2347 2434 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
2348 2435 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
2349 2436 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
2350 2437 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
2351 2438 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
2352 2439 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
2353 2440 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
2368 2455 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2369 2456 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2370 2457 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2371 2458 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2372 2459 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2373 2460 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2374 2461 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2375 2462 7.786464 ACTTATATTTAGGAACGGAGGGAGTAA 59.214 37.037 0.00 0.00 0.00 2.24
2376 2463 8.731591 TTATATTTAGGAACGGAGGGAGTAAT 57.268 34.615 0.00 0.00 0.00 1.89
2377 2464 9.827198 TTATATTTAGGAACGGAGGGAGTAATA 57.173 33.333 0.00 0.00 0.00 0.98
2378 2465 8.912614 ATATTTAGGAACGGAGGGAGTAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2379 2466 7.628501 ATTTAGGAACGGAGGGAGTAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2380 2467 6.661304 TTAGGAACGGAGGGAGTAATATTC 57.339 41.667 0.00 0.00 0.00 1.75
2381 2468 4.817286 AGGAACGGAGGGAGTAATATTCT 58.183 43.478 0.00 0.00 0.00 2.40
2439 2530 4.686191 TTTTGGCATTTCATGGTGACTT 57.314 36.364 0.00 0.00 0.00 3.01
2441 2532 1.811965 TGGCATTTCATGGTGACTTCG 59.188 47.619 0.00 0.00 0.00 3.79
2442 2533 2.083774 GGCATTTCATGGTGACTTCGA 58.916 47.619 0.00 0.00 0.00 3.71
2470 2561 7.615365 TCTTTGCAGGTGACCAAGAATATATTT 59.385 33.333 3.63 0.00 0.00 1.40
2557 2648 5.359576 TCAAGAACTAATGCAAAAGGTGTGT 59.640 36.000 0.00 0.00 0.00 3.72
2583 2674 6.604795 CCTTGATTCAACCATTATTCCTGAGT 59.395 38.462 0.00 0.00 0.00 3.41
2607 2698 8.709308 AGTATCTGAACTTATATTGGACTGCTT 58.291 33.333 0.00 0.00 0.00 3.91
2873 2965 9.705290 GGAATGGTTTTCTTATTATGTTGTTGT 57.295 29.630 0.00 0.00 0.00 3.32
2921 3029 9.310716 GTGAGGACTACATATACACTTTTAACC 57.689 37.037 0.00 0.00 0.00 2.85
3075 3191 7.224753 TCGATGTTAGAAGATAATGAAGTTGCC 59.775 37.037 0.00 0.00 0.00 4.52
3269 3615 0.767998 GATCTCCCTGGTGGAATCCC 59.232 60.000 0.00 0.00 44.57 3.85
3422 3768 1.144969 GTTGTCAAATCCGCTCGTCA 58.855 50.000 0.00 0.00 0.00 4.35
3542 3891 5.181245 ACTTGGGTCGTCAAACATCATTTAG 59.819 40.000 0.00 0.00 0.00 1.85
3641 4987 7.637229 AGCATGAAAATCTTAAGATGATGTCG 58.363 34.615 18.61 7.99 34.49 4.35
3701 5047 4.920376 AGTTCAATTTGACACCTTCAACG 58.080 39.130 0.00 0.00 44.28 4.10
3704 5050 3.692101 TCAATTTGACACCTTCAACGTGT 59.308 39.130 0.00 0.00 44.28 4.49
3798 5144 6.363577 TCAAATAGGCGAATCATTGTCTTC 57.636 37.500 0.00 0.00 0.00 2.87
3827 5173 0.035630 GATCAAGAGCTGTGGCCTGT 60.036 55.000 3.32 0.00 39.73 4.00
3947 5636 2.031120 ACTGCTAGAGTGCTGAGGATC 58.969 52.381 0.00 0.00 36.10 3.36
4098 5795 4.466828 CTGGCGTCTGTTTTTATTGACTG 58.533 43.478 0.00 0.00 0.00 3.51
4099 5796 4.130857 TGGCGTCTGTTTTTATTGACTGA 58.869 39.130 0.00 0.00 0.00 3.41
4100 5797 4.213270 TGGCGTCTGTTTTTATTGACTGAG 59.787 41.667 0.00 0.00 0.00 3.35
4101 5798 4.213482 GGCGTCTGTTTTTATTGACTGAGT 59.787 41.667 0.00 0.00 0.00 3.41
4102 5799 5.374898 GCGTCTGTTTTTATTGACTGAGTC 58.625 41.667 5.47 5.47 0.00 3.36
4103 5800 5.177696 GCGTCTGTTTTTATTGACTGAGTCT 59.822 40.000 14.42 0.00 33.15 3.24
4104 5801 6.584954 CGTCTGTTTTTATTGACTGAGTCTG 58.415 40.000 14.42 0.00 33.15 3.51
4105 5802 6.201044 CGTCTGTTTTTATTGACTGAGTCTGT 59.799 38.462 14.42 1.78 33.15 3.41
4106 5803 7.254455 CGTCTGTTTTTATTGACTGAGTCTGTT 60.254 37.037 14.42 1.27 33.15 3.16
4107 5804 8.398665 GTCTGTTTTTATTGACTGAGTCTGTTT 58.601 33.333 14.42 0.00 33.15 2.83
4108 5805 8.956426 TCTGTTTTTATTGACTGAGTCTGTTTT 58.044 29.630 14.42 0.00 33.15 2.43
4116 5813 8.682936 ATTGACTGAGTCTGTTTTAATTGACT 57.317 30.769 14.42 0.00 41.76 3.41
4779 6537 9.927081 ATTCTTTTACTGGTCTTTATCCATGAT 57.073 29.630 0.00 0.00 34.26 2.45
4815 6576 9.841295 TGAACCAAGTTTATATAATCCCTACAC 57.159 33.333 0.00 0.00 0.00 2.90
4998 6759 8.495949 GCACACTAAAATGCGTCTATATACATT 58.504 33.333 0.00 0.00 34.30 2.71
5057 6818 2.205022 TGAAGCCATTCTGAACCCAG 57.795 50.000 0.00 0.00 41.74 4.45
5133 6894 7.750229 TGAGCAATCAAGTCTGTAAAAGATT 57.250 32.000 0.00 0.00 37.23 2.40
5432 7194 2.772924 CCCCACAGATTTGCCCCT 59.227 61.111 0.00 0.00 0.00 4.79
5486 7248 5.717119 CATTATGGAGCAAGAAAAGCTGTT 58.283 37.500 0.00 0.00 43.58 3.16
5525 7287 7.767261 GGTAGCAACCAAAATAACATCACATA 58.233 34.615 0.00 0.00 45.98 2.29
5529 7291 8.313292 AGCAACCAAAATAACATCACATACAAT 58.687 29.630 0.00 0.00 0.00 2.71
5571 7333 5.887598 TGTGAATTAACAATGATGGAGAGGG 59.112 40.000 0.00 0.00 0.00 4.30
5579 7341 4.040952 ACAATGATGGAGAGGGCTATGTAC 59.959 45.833 0.00 0.00 0.00 2.90
5581 7343 2.240279 GATGGAGAGGGCTATGTACGT 58.760 52.381 0.00 0.00 0.00 3.57
5584 7346 2.954318 TGGAGAGGGCTATGTACGTTAC 59.046 50.000 0.00 0.00 0.00 2.50
5585 7347 2.031333 GGAGAGGGCTATGTACGTTACG 60.031 54.545 2.19 2.19 0.00 3.18
5586 7348 1.336125 AGAGGGCTATGTACGTTACGC 59.664 52.381 4.09 0.00 0.00 4.42
5595 7357 6.583806 GGCTATGTACGTTACGCTTATACATT 59.416 38.462 18.73 8.00 37.57 2.71
5599 7361 4.525411 ACGTTACGCTTATACATTTGCC 57.475 40.909 4.09 0.00 0.00 4.52
5618 7380 8.597227 CATTTGCCACAGATAAACACATATTTG 58.403 33.333 0.00 0.00 0.00 2.32
5658 7420 7.559533 TGCAGTTTAAGAATAATGCAGGGATTA 59.440 33.333 0.00 0.00 38.64 1.75
5721 7483 5.994250 TGCAGAGTCAAAATTAGCTATCCT 58.006 37.500 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 25 7.865820 TCCAGGAAGAAAATAGACATGAATCT 58.134 34.615 0.00 0.00 0.00 2.40
83 86 1.893062 CACGCAGTCTGATCCCTGA 59.107 57.895 3.32 0.00 41.61 3.86
98 101 3.869272 GCGATGAAGGGCTGCACG 61.869 66.667 0.50 0.00 0.00 5.34
134 137 0.835941 AGAATGCCGCTGGATTCTCT 59.164 50.000 17.17 0.00 34.46 3.10
152 155 6.407979 CCTCCTCTTCCAAAATCTCCTTAGAG 60.408 46.154 0.00 0.00 41.93 2.43
210 213 1.407437 CCATGCCGGAGCTCTAACTTT 60.407 52.381 14.64 0.00 40.80 2.66
224 227 3.845781 TTGGATTCTCTAGACCATGCC 57.154 47.619 0.93 0.00 32.31 4.40
259 268 3.330267 CTGTCAGCTTAAACCAGAGGAC 58.670 50.000 0.00 0.00 0.00 3.85
264 273 1.808945 CAGGCTGTCAGCTTAAACCAG 59.191 52.381 23.68 0.11 41.99 4.00
307 317 1.071471 AAGGTGAAGGGTGCGAGTG 59.929 57.895 0.00 0.00 0.00 3.51
308 318 1.071471 CAAGGTGAAGGGTGCGAGT 59.929 57.895 0.00 0.00 0.00 4.18
309 319 0.535102 AACAAGGTGAAGGGTGCGAG 60.535 55.000 0.00 0.00 0.00 5.03
310 320 0.106918 AAACAAGGTGAAGGGTGCGA 60.107 50.000 0.00 0.00 0.00 5.10
311 321 0.310854 GAAACAAGGTGAAGGGTGCG 59.689 55.000 0.00 0.00 0.00 5.34
312 322 1.609072 GAGAAACAAGGTGAAGGGTGC 59.391 52.381 0.00 0.00 0.00 5.01
316 326 8.581253 AATTTATAGGAGAAACAAGGTGAAGG 57.419 34.615 0.00 0.00 0.00 3.46
346 356 8.800332 CCTGAATGCTTAATCTTGCCTATAAAT 58.200 33.333 0.00 0.00 0.00 1.40
368 381 3.634397 ATTTCTGCCGAAGAATCCTGA 57.366 42.857 1.95 0.00 44.46 3.86
626 647 5.520649 GTCAAATAACTGTTTCCCGCAAAAA 59.479 36.000 0.00 0.00 0.00 1.94
627 648 5.044558 GTCAAATAACTGTTTCCCGCAAAA 58.955 37.500 0.00 0.00 0.00 2.44
628 649 4.500035 GGTCAAATAACTGTTTCCCGCAAA 60.500 41.667 0.00 0.00 0.00 3.68
629 650 3.004944 GGTCAAATAACTGTTTCCCGCAA 59.995 43.478 0.00 0.00 0.00 4.85
630 651 2.554893 GGTCAAATAACTGTTTCCCGCA 59.445 45.455 0.00 0.00 0.00 5.69
631 652 2.817844 AGGTCAAATAACTGTTTCCCGC 59.182 45.455 0.00 0.00 0.00 6.13
632 653 4.277423 ACAAGGTCAAATAACTGTTTCCCG 59.723 41.667 0.00 0.00 0.00 5.14
633 654 5.784578 ACAAGGTCAAATAACTGTTTCCC 57.215 39.130 0.00 0.00 0.00 3.97
634 655 5.462068 GCAACAAGGTCAAATAACTGTTTCC 59.538 40.000 0.00 0.00 0.00 3.13
635 656 5.173131 CGCAACAAGGTCAAATAACTGTTTC 59.827 40.000 0.00 0.00 0.00 2.78
636 657 5.040635 CGCAACAAGGTCAAATAACTGTTT 58.959 37.500 0.00 0.00 0.00 2.83
637 658 4.336993 TCGCAACAAGGTCAAATAACTGTT 59.663 37.500 0.00 0.00 0.00 3.16
638 659 3.880490 TCGCAACAAGGTCAAATAACTGT 59.120 39.130 0.00 0.00 0.00 3.55
639 660 4.481930 TCGCAACAAGGTCAAATAACTG 57.518 40.909 0.00 0.00 0.00 3.16
762 794 6.260714 CCCAAAAGCTCTTGCAAAAACTTAAT 59.739 34.615 0.00 0.00 42.74 1.40
792 824 3.077359 CCAGAAGGAAAATCGTTGAGCT 58.923 45.455 0.00 0.00 36.89 4.09
853 909 6.073222 GCTACGGTTCTTCATCTTCTCAAAAA 60.073 38.462 0.00 0.00 0.00 1.94
854 910 5.408604 GCTACGGTTCTTCATCTTCTCAAAA 59.591 40.000 0.00 0.00 0.00 2.44
855 911 4.929808 GCTACGGTTCTTCATCTTCTCAAA 59.070 41.667 0.00 0.00 0.00 2.69
856 912 4.495422 GCTACGGTTCTTCATCTTCTCAA 58.505 43.478 0.00 0.00 0.00 3.02
857 913 3.119101 GGCTACGGTTCTTCATCTTCTCA 60.119 47.826 0.00 0.00 0.00 3.27
858 914 3.119101 TGGCTACGGTTCTTCATCTTCTC 60.119 47.826 0.00 0.00 0.00 2.87
859 915 2.832129 TGGCTACGGTTCTTCATCTTCT 59.168 45.455 0.00 0.00 0.00 2.85
860 916 3.190874 CTGGCTACGGTTCTTCATCTTC 58.809 50.000 0.00 0.00 0.00 2.87
861 917 2.093447 CCTGGCTACGGTTCTTCATCTT 60.093 50.000 0.00 0.00 0.00 2.40
862 918 1.482593 CCTGGCTACGGTTCTTCATCT 59.517 52.381 0.00 0.00 0.00 2.90
863 919 1.941325 CCTGGCTACGGTTCTTCATC 58.059 55.000 0.00 0.00 0.00 2.92
864 920 0.107654 GCCTGGCTACGGTTCTTCAT 60.108 55.000 12.43 0.00 0.00 2.57
865 921 1.295423 GCCTGGCTACGGTTCTTCA 59.705 57.895 12.43 0.00 0.00 3.02
866 922 0.741221 CTGCCTGGCTACGGTTCTTC 60.741 60.000 21.03 0.00 0.00 2.87
867 923 1.192146 TCTGCCTGGCTACGGTTCTT 61.192 55.000 21.03 0.00 0.00 2.52
868 924 1.608717 CTCTGCCTGGCTACGGTTCT 61.609 60.000 21.03 0.00 0.00 3.01
869 925 1.153549 CTCTGCCTGGCTACGGTTC 60.154 63.158 21.03 0.00 0.00 3.62
870 926 2.982130 CTCTGCCTGGCTACGGTT 59.018 61.111 21.03 0.00 0.00 4.44
871 927 3.775654 GCTCTGCCTGGCTACGGT 61.776 66.667 21.03 0.00 0.00 4.83
872 928 2.527951 AAAGCTCTGCCTGGCTACGG 62.528 60.000 21.03 8.50 37.87 4.02
873 929 0.674895 AAAAGCTCTGCCTGGCTACG 60.675 55.000 21.03 8.47 37.87 3.51
874 930 1.470494 GAAAAAGCTCTGCCTGGCTAC 59.530 52.381 21.03 6.48 37.87 3.58
875 931 1.614317 GGAAAAAGCTCTGCCTGGCTA 60.614 52.381 21.03 7.18 37.87 3.93
876 932 0.897401 GGAAAAAGCTCTGCCTGGCT 60.897 55.000 21.03 0.00 40.85 4.75
877 933 0.897401 AGGAAAAAGCTCTGCCTGGC 60.897 55.000 12.87 12.87 0.00 4.85
878 934 1.625511 AAGGAAAAAGCTCTGCCTGG 58.374 50.000 0.00 0.00 0.00 4.45
879 935 3.740631 AAAAGGAAAAAGCTCTGCCTG 57.259 42.857 0.00 0.00 0.00 4.85
880 936 3.963374 AGAAAAAGGAAAAAGCTCTGCCT 59.037 39.130 0.00 0.00 0.00 4.75
881 937 4.327982 AGAAAAAGGAAAAAGCTCTGCC 57.672 40.909 0.00 0.00 0.00 4.85
882 938 6.313658 TCAAAAGAAAAAGGAAAAAGCTCTGC 59.686 34.615 0.00 0.00 0.00 4.26
883 939 7.761249 TCTCAAAAGAAAAAGGAAAAAGCTCTG 59.239 33.333 0.00 0.00 0.00 3.35
884 940 7.840931 TCTCAAAAGAAAAAGGAAAAAGCTCT 58.159 30.769 0.00 0.00 0.00 4.09
885 941 7.254252 GCTCTCAAAAGAAAAAGGAAAAAGCTC 60.254 37.037 0.00 0.00 0.00 4.09
886 942 6.536582 GCTCTCAAAAGAAAAAGGAAAAAGCT 59.463 34.615 0.00 0.00 0.00 3.74
887 943 6.536582 AGCTCTCAAAAGAAAAAGGAAAAAGC 59.463 34.615 0.00 0.00 0.00 3.51
888 944 7.010830 CCAGCTCTCAAAAGAAAAAGGAAAAAG 59.989 37.037 0.00 0.00 0.00 2.27
928 985 4.190772 CAAGACAACATGCTTTTTGGGTT 58.809 39.130 0.00 0.00 0.00 4.11
929 986 3.432046 CCAAGACAACATGCTTTTTGGGT 60.432 43.478 0.00 0.00 32.09 4.51
1041 1099 2.646175 CGGGGTGCGGAGAAGAGAA 61.646 63.158 0.00 0.00 0.00 2.87
1116 1174 2.220586 TGGTGGTCGCCATGGAGAA 61.221 57.895 20.63 2.35 35.28 2.87
1313 1371 2.124487 AGCTCCTCCTCGACCTCG 60.124 66.667 0.00 0.00 41.45 4.63
1364 1422 4.657824 ACGGTGCCGGTGAACTCG 62.658 66.667 15.44 8.11 44.69 4.18
1550 1608 5.116180 TCCCACTAAGCATCGAACTAATTG 58.884 41.667 0.00 0.00 0.00 2.32
1553 1611 4.021229 TCTCCCACTAAGCATCGAACTAA 58.979 43.478 0.00 0.00 0.00 2.24
1557 1622 2.166459 CAGTCTCCCACTAAGCATCGAA 59.834 50.000 0.00 0.00 32.21 3.71
1573 1638 1.466856 TCGTATAACCCGCACAGTCT 58.533 50.000 0.00 0.00 0.00 3.24
1579 1644 3.225104 ACTCCTAATCGTATAACCCGCA 58.775 45.455 0.00 0.00 0.00 5.69
1581 1646 6.974965 ACTAAACTCCTAATCGTATAACCCG 58.025 40.000 0.00 0.00 0.00 5.28
1582 1647 9.684448 GTAACTAAACTCCTAATCGTATAACCC 57.316 37.037 0.00 0.00 0.00 4.11
1597 1662 7.522889 AGGAACTACCGAAGTGTAACTAAACTC 60.523 40.741 0.00 0.00 46.57 3.01
1613 1678 4.081642 TCCAATCTTTGAGAGGAACTACCG 60.082 45.833 0.00 0.00 41.55 4.02
1627 1692 4.624015 CACAAGCAACATGTCCAATCTTT 58.376 39.130 0.00 0.00 0.00 2.52
1697 1772 6.603940 TGGCATGGCTAAAACTCTATTTTT 57.396 33.333 21.08 0.00 33.27 1.94
1698 1773 6.603940 TTGGCATGGCTAAAACTCTATTTT 57.396 33.333 21.08 0.00 0.00 1.82
1725 1800 1.004628 TGCTCCACACAATGTGCCTAT 59.995 47.619 14.01 0.00 46.51 2.57
1778 1858 2.029200 TGAACGACGTTAGCACCCAATA 60.029 45.455 14.20 0.00 0.00 1.90
1836 1916 6.154877 TGAAATTGCAACATAGAATCCCACAT 59.845 34.615 0.00 0.00 0.00 3.21
1871 1957 8.621532 TGGCTCATGGTTCTATGATATTTTAC 57.378 34.615 0.00 0.00 36.55 2.01
1894 1980 7.442364 CCAGTTGAGTATTTAGTATGGTCATGG 59.558 40.741 0.00 0.00 0.00 3.66
1920 2006 1.266989 GTTCAGGTGTAAGGCAGTTGC 59.733 52.381 0.00 0.00 41.14 4.17
1921 2007 2.851195 AGTTCAGGTGTAAGGCAGTTG 58.149 47.619 0.00 0.00 0.00 3.16
1922 2008 3.214328 CAAGTTCAGGTGTAAGGCAGTT 58.786 45.455 0.00 0.00 0.00 3.16
1923 2009 2.851195 CAAGTTCAGGTGTAAGGCAGT 58.149 47.619 0.00 0.00 0.00 4.40
1924 2010 1.537202 GCAAGTTCAGGTGTAAGGCAG 59.463 52.381 0.00 0.00 0.00 4.85
1925 2011 1.133945 TGCAAGTTCAGGTGTAAGGCA 60.134 47.619 0.00 0.00 0.00 4.75
1926 2012 1.266989 GTGCAAGTTCAGGTGTAAGGC 59.733 52.381 0.00 0.00 0.00 4.35
1927 2013 2.571212 TGTGCAAGTTCAGGTGTAAGG 58.429 47.619 0.00 0.00 0.00 2.69
1928 2014 4.836125 ATTGTGCAAGTTCAGGTGTAAG 57.164 40.909 0.00 0.00 0.00 2.34
1929 2015 6.892658 AATATTGTGCAAGTTCAGGTGTAA 57.107 33.333 0.00 0.00 0.00 2.41
1930 2016 8.574251 AATAATATTGTGCAAGTTCAGGTGTA 57.426 30.769 0.00 0.00 0.00 2.90
1931 2017 7.466746 AATAATATTGTGCAAGTTCAGGTGT 57.533 32.000 0.00 0.00 0.00 4.16
1932 2018 6.688385 CGAATAATATTGTGCAAGTTCAGGTG 59.312 38.462 0.00 0.00 0.00 4.00
1933 2019 6.374333 ACGAATAATATTGTGCAAGTTCAGGT 59.626 34.615 0.00 0.00 0.00 4.00
1934 2020 6.785191 ACGAATAATATTGTGCAAGTTCAGG 58.215 36.000 0.00 0.00 0.00 3.86
1935 2021 8.577939 CAAACGAATAATATTGTGCAAGTTCAG 58.422 33.333 0.00 0.00 0.00 3.02
1936 2022 8.079203 ACAAACGAATAATATTGTGCAAGTTCA 58.921 29.630 0.00 0.00 34.88 3.18
1937 2023 8.447787 ACAAACGAATAATATTGTGCAAGTTC 57.552 30.769 0.00 0.00 34.88 3.01
1938 2024 8.698854 CAACAAACGAATAATATTGTGCAAGTT 58.301 29.630 0.00 0.00 36.23 2.66
1939 2025 8.079203 TCAACAAACGAATAATATTGTGCAAGT 58.921 29.630 0.00 0.00 36.23 3.16
1940 2026 8.446489 TCAACAAACGAATAATATTGTGCAAG 57.554 30.769 0.00 0.00 36.23 4.01
1941 2027 8.803201 TTCAACAAACGAATAATATTGTGCAA 57.197 26.923 0.00 0.00 36.23 4.08
1942 2028 8.803201 TTTCAACAAACGAATAATATTGTGCA 57.197 26.923 0.00 0.00 36.23 4.57
1943 2029 9.674208 CATTTCAACAAACGAATAATATTGTGC 57.326 29.630 0.00 0.00 36.23 4.57
1959 2045 7.961351 ACTCCCATATTTGTTCATTTCAACAA 58.039 30.769 0.00 0.00 43.10 2.83
1960 2046 7.537596 ACTCCCATATTTGTTCATTTCAACA 57.462 32.000 0.00 0.00 34.36 3.33
1966 2052 9.479549 ACTGAATTACTCCCATATTTGTTCATT 57.520 29.630 0.00 0.00 0.00 2.57
1967 2053 9.479549 AACTGAATTACTCCCATATTTGTTCAT 57.520 29.630 0.00 0.00 0.00 2.57
1968 2054 8.877864 AACTGAATTACTCCCATATTTGTTCA 57.122 30.769 0.00 0.00 0.00 3.18
1969 2055 9.573133 CAAACTGAATTACTCCCATATTTGTTC 57.427 33.333 0.00 0.00 0.00 3.18
1970 2056 9.088987 ACAAACTGAATTACTCCCATATTTGTT 57.911 29.630 0.00 0.00 33.92 2.83
1971 2057 8.650143 ACAAACTGAATTACTCCCATATTTGT 57.350 30.769 0.00 0.00 33.08 2.83
1972 2058 9.927668 AAACAAACTGAATTACTCCCATATTTG 57.072 29.630 0.00 0.00 0.00 2.32
1974 2060 9.308000 TGAAACAAACTGAATTACTCCCATATT 57.692 29.630 0.00 0.00 0.00 1.28
1975 2061 8.877864 TGAAACAAACTGAATTACTCCCATAT 57.122 30.769 0.00 0.00 0.00 1.78
1976 2062 7.942341 ACTGAAACAAACTGAATTACTCCCATA 59.058 33.333 0.00 0.00 0.00 2.74
1977 2063 6.777580 ACTGAAACAAACTGAATTACTCCCAT 59.222 34.615 0.00 0.00 0.00 4.00
1978 2064 6.126409 ACTGAAACAAACTGAATTACTCCCA 58.874 36.000 0.00 0.00 0.00 4.37
1979 2065 6.635030 ACTGAAACAAACTGAATTACTCCC 57.365 37.500 0.00 0.00 0.00 4.30
1980 2066 9.052759 TCTAACTGAAACAAACTGAATTACTCC 57.947 33.333 0.00 0.00 0.00 3.85
2012 2098 7.456725 TCCTGATTCTTTCTCTCACTCAAAAT 58.543 34.615 0.00 0.00 0.00 1.82
2017 2103 5.913137 TCTCCTGATTCTTTCTCTCACTC 57.087 43.478 0.00 0.00 0.00 3.51
2021 2107 7.977789 AAAAGTTCTCCTGATTCTTTCTCTC 57.022 36.000 0.00 0.00 31.56 3.20
2066 2153 7.617041 AGGTTTAGCTTATGATCAACAGAAC 57.383 36.000 0.00 0.00 0.00 3.01
2079 2166 8.700439 ATCAACAAAAAGGTAGGTTTAGCTTA 57.300 30.769 0.00 0.00 44.55 3.09
2087 2174 7.690256 AGATAGTGATCAACAAAAAGGTAGGT 58.310 34.615 0.00 0.00 34.17 3.08
2110 2197 8.845227 TGTGATCAAACAAAACATAAGCTTAGA 58.155 29.630 12.54 0.01 0.00 2.10
2148 2235 5.500645 AAATTAAGCGTAAAGATGAGCCC 57.499 39.130 0.00 0.00 0.00 5.19
2166 2253 8.953368 AACATCAGCAAGAAAAAGAGAAAATT 57.047 26.923 0.00 0.00 0.00 1.82
2213 2300 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2214 2301 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2215 2302 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2216 2303 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2217 2304 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2252 2339 3.548770 TCCGTATGTAGTCCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
2253 2340 3.818180 CTCCGTATGTAGTCCACCTAGT 58.182 50.000 0.00 0.00 0.00 2.57
2254 2341 2.553172 GCTCCGTATGTAGTCCACCTAG 59.447 54.545 0.00 0.00 0.00 3.02
2255 2342 2.092267 TGCTCCGTATGTAGTCCACCTA 60.092 50.000 0.00 0.00 0.00 3.08
2256 2343 1.341679 TGCTCCGTATGTAGTCCACCT 60.342 52.381 0.00 0.00 0.00 4.00
2257 2344 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
2258 2345 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
2259 2346 4.081365 TCAATTTGCTCCGTATGTAGTCCA 60.081 41.667 0.00 0.00 0.00 4.02
2260 2347 4.439057 TCAATTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2261 2348 6.257849 TCATTCAATTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
2262 2349 6.112734 TCATTCAATTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2263 2350 6.603237 TCATTCAATTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2264 2351 6.993786 TTCATTCAATTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2265 2352 5.895636 TTCATTCAATTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2266 2353 6.732154 AGATTCATTCAATTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2267 2354 6.949352 AGATTCATTCAATTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2268 2355 6.821160 TGTAGATTCATTCAATTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2269 2356 5.647658 TGTAGATTCATTCAATTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2270 2357 5.967674 GTGTAGATTCATTCAATTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
2271 2358 7.093322 AGTGTAGATTCATTCAATTTGCTCC 57.907 36.000 0.00 0.00 0.00 4.70
2293 2380 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
2297 2384 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
2298 2385 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
2299 2386 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
2300 2387 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
2301 2388 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
2302 2389 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
2303 2390 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
2304 2391 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
2305 2392 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
2306 2393 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
2307 2394 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
2308 2395 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
2309 2396 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
2310 2397 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
2311 2398 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
2313 2400 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
2314 2401 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
2315 2402 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
2316 2403 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
2317 2404 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
2318 2405 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
2319 2406 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
2320 2407 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
2321 2408 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
2322 2409 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
2323 2410 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
2324 2411 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
2325 2412 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
2326 2413 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
2327 2414 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
2343 2430 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2344 2431 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2345 2432 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2346 2433 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2347 2434 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2348 2435 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2349 2436 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2350 2437 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2351 2438 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
2353 2440 8.912614 ATATTACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2354 2441 8.731591 AATATTACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
2355 2442 7.513091 AGAATATTACTCCCTCCGTTCCTAAAT 59.487 37.037 0.00 0.00 0.00 1.40
2356 2443 6.842807 AGAATATTACTCCCTCCGTTCCTAAA 59.157 38.462 0.00 0.00 0.00 1.85
2357 2444 6.379579 AGAATATTACTCCCTCCGTTCCTAA 58.620 40.000 0.00 0.00 0.00 2.69
2358 2445 5.961897 AGAATATTACTCCCTCCGTTCCTA 58.038 41.667 0.00 0.00 0.00 2.94
2359 2446 4.817286 AGAATATTACTCCCTCCGTTCCT 58.183 43.478 0.00 0.00 0.00 3.36
2360 2447 6.854091 ATAGAATATTACTCCCTCCGTTCC 57.146 41.667 0.00 0.00 0.00 3.62
2361 2448 6.590677 GCAATAGAATATTACTCCCTCCGTTC 59.409 42.308 0.00 0.00 0.00 3.95
2362 2449 6.270231 AGCAATAGAATATTACTCCCTCCGTT 59.730 38.462 0.00 0.00 0.00 4.44
2363 2450 5.780793 AGCAATAGAATATTACTCCCTCCGT 59.219 40.000 0.00 0.00 0.00 4.69
2364 2451 6.153680 AGAGCAATAGAATATTACTCCCTCCG 59.846 42.308 6.26 0.00 0.00 4.63
2365 2452 7.179338 TGAGAGCAATAGAATATTACTCCCTCC 59.821 40.741 6.26 0.00 0.00 4.30
2366 2453 8.128322 TGAGAGCAATAGAATATTACTCCCTC 57.872 38.462 6.26 0.00 0.00 4.30
2367 2454 8.677870 ATGAGAGCAATAGAATATTACTCCCT 57.322 34.615 6.26 0.00 0.00 4.20
2377 2464 9.717942 GGTTATGACTTATGAGAGCAATAGAAT 57.282 33.333 0.00 0.00 0.00 2.40
2378 2465 8.704668 TGGTTATGACTTATGAGAGCAATAGAA 58.295 33.333 0.00 0.00 0.00 2.10
2379 2466 8.250143 TGGTTATGACTTATGAGAGCAATAGA 57.750 34.615 0.00 0.00 0.00 1.98
2380 2467 9.499479 AATGGTTATGACTTATGAGAGCAATAG 57.501 33.333 0.00 0.00 0.00 1.73
2439 2530 1.071542 TGGTCACCTGCAAAGAATCGA 59.928 47.619 0.00 0.00 0.00 3.59
2441 2532 3.149196 TCTTGGTCACCTGCAAAGAATC 58.851 45.455 0.00 0.00 0.00 2.52
2442 2533 3.228188 TCTTGGTCACCTGCAAAGAAT 57.772 42.857 0.00 0.00 0.00 2.40
2470 2561 5.258456 ACTCGTCTAGTGACTTCAACAAA 57.742 39.130 0.00 0.00 40.86 2.83
2557 2648 6.730447 TCAGGAATAATGGTTGAATCAAGGA 58.270 36.000 0.00 0.00 0.00 3.36
2583 2674 9.905713 AAAAGCAGTCCAATATAAGTTCAGATA 57.094 29.630 0.00 0.00 0.00 1.98
2607 2698 6.322712 AGAAAATAAAGCAGGTGTGTGGTAAA 59.677 34.615 0.00 0.00 0.00 2.01
2826 2918 4.041567 TCCTCAAACAGCAGTAGAAATGGA 59.958 41.667 0.00 0.00 0.00 3.41
2873 2965 4.590647 ACTATAGCCAGATAGCTTTGCAGA 59.409 41.667 0.00 0.00 41.41 4.26
2921 3029 5.126061 CCTGTCTGAATACATGGGGAAAAAG 59.874 44.000 0.00 0.00 0.00 2.27
3075 3191 9.060547 CGTCTAGATATCTCATTCAGAATTTCG 57.939 37.037 8.95 2.67 33.62 3.46
3269 3615 6.655003 ACATGATCAGTACCAAGTTTTACAGG 59.345 38.462 0.00 0.00 0.00 4.00
3422 3768 7.386848 ACTGAACAATGTGTATAAAGCTAACGT 59.613 33.333 0.00 0.00 0.00 3.99
3542 3891 4.917887 GCTGCAGCATACAGATGTATAC 57.082 45.455 33.36 0.00 39.06 1.47
3641 4987 5.910637 TTCAAATGCAGTGCTTTGATTTC 57.089 34.783 27.85 0.00 40.13 2.17
3733 5079 3.671716 AGGTTCGTAGCAACCCTAAAAG 58.328 45.455 0.24 0.00 46.39 2.27
3784 5130 8.201554 TCATTTTCTAGGAAGACAATGATTCG 57.798 34.615 11.15 0.00 46.54 3.34
3798 5144 5.296283 CCACAGCTCTTGATCATTTTCTAGG 59.704 44.000 0.00 0.00 0.00 3.02
3947 5636 7.489113 GGACCTGCAATATCATAAAACACAAAG 59.511 37.037 0.00 0.00 0.00 2.77
4099 5796 6.514048 GCTGCAAGAGTCAATTAAAACAGACT 60.514 38.462 0.00 0.00 43.50 3.24
4100 5797 5.626955 GCTGCAAGAGTCAATTAAAACAGAC 59.373 40.000 0.00 0.00 34.07 3.51
4101 5798 5.532406 AGCTGCAAGAGTCAATTAAAACAGA 59.468 36.000 1.02 0.00 34.07 3.41
4102 5799 5.766222 AGCTGCAAGAGTCAATTAAAACAG 58.234 37.500 1.02 0.00 34.07 3.16
4103 5800 5.772825 AGCTGCAAGAGTCAATTAAAACA 57.227 34.783 1.02 0.00 34.07 2.83
4104 5801 7.584987 TCTTAGCTGCAAGAGTCAATTAAAAC 58.415 34.615 1.02 0.00 34.07 2.43
4105 5802 7.744087 TCTTAGCTGCAAGAGTCAATTAAAA 57.256 32.000 1.02 0.00 34.07 1.52
4106 5803 7.744087 TTCTTAGCTGCAAGAGTCAATTAAA 57.256 32.000 1.02 0.00 35.99 1.52
4107 5804 7.928307 ATTCTTAGCTGCAAGAGTCAATTAA 57.072 32.000 1.02 0.00 35.99 1.40
4108 5805 7.928307 AATTCTTAGCTGCAAGAGTCAATTA 57.072 32.000 1.02 0.00 35.99 1.40
4109 5806 6.830873 AATTCTTAGCTGCAAGAGTCAATT 57.169 33.333 1.02 3.69 35.99 2.32
4110 5807 6.830873 AAATTCTTAGCTGCAAGAGTCAAT 57.169 33.333 1.02 0.00 35.99 2.57
4111 5808 6.488006 AGAAAATTCTTAGCTGCAAGAGTCAA 59.512 34.615 1.02 0.00 35.99 3.18
4112 5809 6.000219 AGAAAATTCTTAGCTGCAAGAGTCA 59.000 36.000 1.02 0.00 35.99 3.41
4113 5810 6.313252 CAGAAAATTCTTAGCTGCAAGAGTC 58.687 40.000 1.02 5.86 35.99 3.36
4114 5811 5.182760 CCAGAAAATTCTTAGCTGCAAGAGT 59.817 40.000 1.02 3.48 35.99 3.24
4115 5812 5.413833 TCCAGAAAATTCTTAGCTGCAAGAG 59.586 40.000 1.02 0.00 35.99 2.85
4116 5813 5.182001 GTCCAGAAAATTCTTAGCTGCAAGA 59.818 40.000 1.02 6.43 34.74 3.02
4815 6576 0.464373 AGTGCACAACTCACACCCAG 60.464 55.000 21.04 0.00 31.64 4.45
4982 6743 8.314021 TCCTGATTCAAATGTATATAGACGCAT 58.686 33.333 0.00 0.00 0.00 4.73
4998 6759 6.537453 TGTTCCAACTTTTTCCTGATTCAA 57.463 33.333 0.00 0.00 0.00 2.69
5057 6818 3.627123 TGCTATCCACATATTGTGCACAC 59.373 43.478 21.56 3.50 46.51 3.82
5074 6835 4.701651 TCAAATCTGGATGCTCTGCTAT 57.298 40.909 0.00 0.00 0.00 2.97
5157 6919 2.363306 TCATCCAGTTTGCCTGTGTT 57.637 45.000 0.00 0.00 39.74 3.32
5432 7194 2.169842 TGCGCATGAAGCATCGAAA 58.830 47.368 5.66 0.00 46.13 3.46
5486 7248 4.142093 GGTTGCTACCGTCTTATGTTCCTA 60.142 45.833 0.36 0.00 34.01 2.94
5554 7316 4.660303 ACATAGCCCTCTCCATCATTGTTA 59.340 41.667 0.00 0.00 0.00 2.41
5558 7320 3.259374 CGTACATAGCCCTCTCCATCATT 59.741 47.826 0.00 0.00 0.00 2.57
5562 7324 2.383442 ACGTACATAGCCCTCTCCAT 57.617 50.000 0.00 0.00 0.00 3.41
5571 7333 7.558435 AATGTATAAGCGTAACGTACATAGC 57.442 36.000 5.27 0.00 35.56 2.97
5579 7341 4.201734 TGTGGCAAATGTATAAGCGTAACG 60.202 41.667 0.00 0.00 0.00 3.18
5581 7343 5.179533 TCTGTGGCAAATGTATAAGCGTAA 58.820 37.500 0.00 0.00 0.00 3.18
5584 7346 4.818534 ATCTGTGGCAAATGTATAAGCG 57.181 40.909 0.00 0.00 0.00 4.68
5585 7347 7.432252 GTGTTTATCTGTGGCAAATGTATAAGC 59.568 37.037 0.00 0.00 0.00 3.09
5586 7348 8.458052 TGTGTTTATCTGTGGCAAATGTATAAG 58.542 33.333 0.00 0.00 0.00 1.73
5595 7357 7.225784 ACAAATATGTGTTTATCTGTGGCAA 57.774 32.000 0.00 0.00 38.69 4.52
5618 7380 8.351495 TCTTAAACTGCATCAAACAAATCAAC 57.649 30.769 0.00 0.00 0.00 3.18
5658 7420 9.717942 GAGCACCTAAAGATGACTATTTGATAT 57.282 33.333 0.00 0.00 0.00 1.63
5660 7422 7.568349 TGAGCACCTAAAGATGACTATTTGAT 58.432 34.615 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.