Multiple sequence alignment - TraesCS2D01G370900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G370900 chr2D 100.000 5366 0 0 1 5366 475076140 475081505 0.000000e+00 9910.0
1 TraesCS2D01G370900 chr2B 92.362 3941 219 39 805 4685 556186216 556190134 0.000000e+00 5535.0
2 TraesCS2D01G370900 chr2B 89.752 644 33 19 4751 5365 556190146 556190785 0.000000e+00 793.0
3 TraesCS2D01G370900 chr2B 88.406 138 13 3 4703 4838 141562302 141562166 4.300000e-36 163.0
4 TraesCS2D01G370900 chr2B 87.591 137 15 2 4700 4834 601696006 601696142 2.000000e-34 158.0
5 TraesCS2D01G370900 chr2B 81.977 172 25 6 2571 2739 556186764 556186932 2.010000e-29 141.0
6 TraesCS2D01G370900 chr2A 95.932 2286 68 13 3089 5366 617637188 617639456 0.000000e+00 3683.0
7 TraesCS2D01G370900 chr2A 89.841 2392 146 33 773 3088 617633958 617636328 0.000000e+00 2981.0
8 TraesCS2D01G370900 chr2A 88.060 134 16 0 4703 4836 141506449 141506316 5.560000e-35 159.0
9 TraesCS2D01G370900 chr5A 76.459 497 94 21 255 738 220960552 220961038 1.150000e-61 248.0
10 TraesCS2D01G370900 chr5A 90.789 76 7 0 2803 2878 637619262 637619187 9.510000e-18 102.0
11 TraesCS2D01G370900 chr7A 73.333 570 123 18 182 726 3410665 3411230 3.300000e-42 183.0
12 TraesCS2D01G370900 chr4B 88.571 140 14 2 4700 4837 22464747 22464608 9.240000e-38 169.0
13 TraesCS2D01G370900 chr4B 73.226 310 80 3 182 489 630132951 630132643 5.680000e-20 110.0
14 TraesCS2D01G370900 chr4B 78.075 187 29 10 545 724 379441354 379441535 2.040000e-19 108.0
15 TraesCS2D01G370900 chr1D 88.489 139 15 1 4703 4841 7349834 7349697 3.320000e-37 167.0
16 TraesCS2D01G370900 chr4A 88.321 137 14 2 4700 4834 30742750 30742886 4.300000e-36 163.0
17 TraesCS2D01G370900 chr3D 87.143 140 16 2 4696 4834 535782532 535782670 2.000000e-34 158.0
18 TraesCS2D01G370900 chr7D 87.912 91 9 2 2788 2877 607041444 607041533 7.350000e-19 106.0
19 TraesCS2D01G370900 chr7D 88.889 81 7 2 649 728 138651533 138651454 1.230000e-16 99.0
20 TraesCS2D01G370900 chr5D 90.541 74 7 0 651 724 43200167 43200094 1.230000e-16 99.0
21 TraesCS2D01G370900 chr5D 89.474 57 2 3 2805 2861 404256776 404256724 9.640000e-08 69.4
22 TraesCS2D01G370900 chr6B 88.608 79 9 0 2797 2875 585329874 585329952 4.420000e-16 97.1
23 TraesCS2D01G370900 chr5B 93.846 65 3 1 2810 2873 528063223 528063287 4.420000e-16 97.1
24 TraesCS2D01G370900 chr5B 76.263 198 31 11 545 729 293307211 293307017 2.060000e-14 91.6
25 TraesCS2D01G370900 chr5B 93.103 58 3 1 2804 2861 74361891 74361835 3.440000e-12 84.2
26 TraesCS2D01G370900 chr5B 81.111 90 16 1 2789 2877 537943235 537943324 2.680000e-08 71.3
27 TraesCS2D01G370900 chr1B 89.744 78 5 3 652 728 288024250 288024175 4.420000e-16 97.1
28 TraesCS2D01G370900 chrUn 85.263 95 9 5 639 729 360427513 360427420 5.720000e-15 93.5
29 TraesCS2D01G370900 chr7B 89.855 69 7 0 2792 2860 439418132 439418200 7.400000e-14 89.8
30 TraesCS2D01G370900 chr6D 95.000 40 2 0 5090 5129 431056186 431056147 4.490000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G370900 chr2D 475076140 475081505 5365 False 9910.000000 9910 100.000000 1 5366 1 chr2D.!!$F1 5365
1 TraesCS2D01G370900 chr2B 556186216 556190785 4569 False 2156.333333 5535 88.030333 805 5365 3 chr2B.!!$F2 4560
2 TraesCS2D01G370900 chr2A 617633958 617639456 5498 False 3332.000000 3683 92.886500 773 5366 2 chr2A.!!$F1 4593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 286 0.036010 AGGCTACACCAGATGCACAC 60.036 55.0 0.00 0.00 43.14 3.82 F
563 564 0.249405 CTCCGAAGCAGAGGAGATGC 60.249 60.0 13.94 0.00 43.96 3.91 F
1129 1150 0.250513 CCTCCTTACCTGTGCCAGAC 59.749 60.0 4.00 0.00 32.44 3.51 F
1356 1391 0.329261 CTGCTCAGGATCCACCCAAA 59.671 55.0 15.82 0.00 40.05 3.28 F
3069 3149 0.373370 TTGGCTGCGATTCGATTTCG 59.627 50.0 10.88 12.46 39.55 3.46 F
3314 4257 0.663153 AAGGACTCGTTTGTGCTTGC 59.337 50.0 10.43 0.00 44.75 4.01 F
3965 4908 1.009829 GTACTGCTTGCATTCCCTCG 58.990 55.0 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1334 1369 0.689080 GGGTGGATCCTGAGCAGAGA 60.689 60.000 14.23 0.00 36.25 3.10 R
1664 1703 1.202806 CCTGCACCAACTCTTCAGGAA 60.203 52.381 0.53 0.00 45.31 3.36 R
3050 3130 0.373370 CGAAATCGAATCGCAGCCAA 59.627 50.000 10.46 0.00 43.02 4.52 R
3246 4189 0.318441 TGCGACTATATCCAGCTGGC 59.682 55.000 28.91 13.15 34.44 4.85 R
4142 5085 1.336125 AGAGGGCTATGTACGTTACGC 59.664 52.381 4.09 0.00 0.00 4.42 R
4143 5086 2.031333 GGAGAGGGCTATGTACGTTACG 60.031 54.545 2.19 2.19 0.00 3.18 R
4913 5857 9.841295 TGAACCAAGTTTATATAATCCCTACAC 57.159 33.333 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.324207 GACCCAACCTGTTCCTGTC 57.676 57.895 0.00 0.00 0.00 3.51
19 20 0.250770 GACCCAACCTGTTCCTGTCC 60.251 60.000 0.00 0.00 0.00 4.02
20 21 0.697854 ACCCAACCTGTTCCTGTCCT 60.698 55.000 0.00 0.00 0.00 3.85
21 22 0.036875 CCCAACCTGTTCCTGTCCTC 59.963 60.000 0.00 0.00 0.00 3.71
22 23 0.036875 CCAACCTGTTCCTGTCCTCC 59.963 60.000 0.00 0.00 0.00 4.30
23 24 1.059913 CAACCTGTTCCTGTCCTCCT 58.940 55.000 0.00 0.00 0.00 3.69
24 25 1.059913 AACCTGTTCCTGTCCTCCTG 58.940 55.000 0.00 0.00 0.00 3.86
25 26 0.838122 ACCTGTTCCTGTCCTCCTGG 60.838 60.000 0.00 0.00 0.00 4.45
26 27 1.298014 CTGTTCCTGTCCTCCTGGC 59.702 63.158 0.00 0.00 32.38 4.85
27 28 2.266055 GTTCCTGTCCTCCTGGCG 59.734 66.667 0.00 0.00 32.38 5.69
28 29 2.119611 TTCCTGTCCTCCTGGCGA 59.880 61.111 0.00 0.00 32.38 5.54
29 30 1.984570 TTCCTGTCCTCCTGGCGAG 60.985 63.158 0.00 0.00 38.46 5.03
30 31 4.154347 CCTGTCCTCCTGGCGAGC 62.154 72.222 0.00 0.00 37.27 5.03
31 32 3.385384 CTGTCCTCCTGGCGAGCA 61.385 66.667 0.00 0.00 37.27 4.26
32 33 2.922503 TGTCCTCCTGGCGAGCAA 60.923 61.111 0.00 0.00 37.27 3.91
33 34 2.347490 GTCCTCCTGGCGAGCAAA 59.653 61.111 0.00 0.00 37.27 3.68
34 35 2.035442 GTCCTCCTGGCGAGCAAAC 61.035 63.158 0.00 0.00 37.27 2.93
35 36 2.032528 CCTCCTGGCGAGCAAACA 59.967 61.111 0.00 0.00 37.27 2.83
36 37 2.328099 CCTCCTGGCGAGCAAACAC 61.328 63.158 0.00 0.00 37.27 3.32
37 38 1.597854 CTCCTGGCGAGCAAACACA 60.598 57.895 0.00 0.00 0.00 3.72
38 39 1.153066 TCCTGGCGAGCAAACACAA 60.153 52.632 0.00 0.00 0.00 3.33
39 40 1.008538 CCTGGCGAGCAAACACAAC 60.009 57.895 0.00 0.00 0.00 3.32
40 41 1.008538 CTGGCGAGCAAACACAACC 60.009 57.895 0.00 0.00 0.00 3.77
41 42 1.723608 CTGGCGAGCAAACACAACCA 61.724 55.000 0.00 0.00 0.00 3.67
42 43 1.008538 GGCGAGCAAACACAACCAG 60.009 57.895 0.00 0.00 0.00 4.00
43 44 1.008538 GCGAGCAAACACAACCAGG 60.009 57.895 0.00 0.00 0.00 4.45
44 45 1.444119 GCGAGCAAACACAACCAGGA 61.444 55.000 0.00 0.00 0.00 3.86
45 46 1.021202 CGAGCAAACACAACCAGGAA 58.979 50.000 0.00 0.00 0.00 3.36
46 47 1.403679 CGAGCAAACACAACCAGGAAA 59.596 47.619 0.00 0.00 0.00 3.13
47 48 2.034558 CGAGCAAACACAACCAGGAAAT 59.965 45.455 0.00 0.00 0.00 2.17
48 49 3.642705 GAGCAAACACAACCAGGAAATC 58.357 45.455 0.00 0.00 0.00 2.17
49 50 2.365293 AGCAAACACAACCAGGAAATCC 59.635 45.455 0.00 0.00 0.00 3.01
51 52 3.552890 GCAAACACAACCAGGAAATCCTC 60.553 47.826 0.00 0.00 46.65 3.71
52 53 2.586648 ACACAACCAGGAAATCCTCC 57.413 50.000 0.00 0.00 46.65 4.30
59 60 3.793888 GGAAATCCTCCGGCCGGT 61.794 66.667 41.57 23.79 33.37 5.28
60 61 2.437396 GGAAATCCTCCGGCCGGTA 61.437 63.158 41.57 28.34 33.37 4.02
61 62 1.069258 GAAATCCTCCGGCCGGTAG 59.931 63.158 41.57 33.26 36.47 3.18
62 63 2.379030 GAAATCCTCCGGCCGGTAGG 62.379 65.000 37.28 37.28 41.62 3.18
72 73 4.420143 CCGGTAGGCATGAACGAG 57.580 61.111 0.00 0.00 0.00 4.18
73 74 1.883084 CCGGTAGGCATGAACGAGC 60.883 63.158 0.00 0.00 0.00 5.03
80 81 3.257561 CATGAACGAGCCGCGGAG 61.258 66.667 33.48 21.52 46.49 4.63
81 82 4.514577 ATGAACGAGCCGCGGAGG 62.515 66.667 33.48 19.27 46.49 4.30
83 84 4.856607 GAACGAGCCGCGGAGGAG 62.857 72.222 33.48 18.76 46.49 3.69
94 95 4.095400 GGAGGAGGGGGAGCCTGA 62.095 72.222 0.00 0.00 33.84 3.86
95 96 2.766229 GAGGAGGGGGAGCCTGAC 60.766 72.222 0.00 0.00 33.84 3.51
96 97 4.787280 AGGAGGGGGAGCCTGACG 62.787 72.222 0.00 0.00 32.06 4.35
97 98 4.779733 GGAGGGGGAGCCTGACGA 62.780 72.222 0.00 0.00 0.00 4.20
98 99 3.151022 GAGGGGGAGCCTGACGAG 61.151 72.222 0.00 0.00 0.00 4.18
119 120 3.465403 CGGAGGAGGCCCAGTGAG 61.465 72.222 0.00 0.00 33.88 3.51
120 121 3.086600 GGAGGAGGCCCAGTGAGG 61.087 72.222 0.00 0.00 33.88 3.86
153 154 2.267642 CGAAGCGGAACCATCCCA 59.732 61.111 0.00 0.00 43.37 4.37
154 155 1.815421 CGAAGCGGAACCATCCCAG 60.815 63.158 0.00 0.00 43.37 4.45
155 156 2.044946 AAGCGGAACCATCCCAGC 60.045 61.111 0.00 0.00 43.37 4.85
156 157 3.645268 AAGCGGAACCATCCCAGCC 62.645 63.158 0.00 0.00 43.37 4.85
158 159 4.506255 CGGAACCATCCCAGCCCC 62.506 72.222 0.00 0.00 43.37 5.80
159 160 3.023735 GGAACCATCCCAGCCCCT 61.024 66.667 0.00 0.00 40.10 4.79
160 161 1.696314 GGAACCATCCCAGCCCCTA 60.696 63.158 0.00 0.00 40.10 3.53
161 162 1.709994 GGAACCATCCCAGCCCCTAG 61.710 65.000 0.00 0.00 40.10 3.02
162 163 2.344878 GAACCATCCCAGCCCCTAGC 62.345 65.000 0.00 0.00 44.25 3.42
163 164 3.574237 CCATCCCAGCCCCTAGCC 61.574 72.222 0.00 0.00 45.47 3.93
164 165 2.773918 CATCCCAGCCCCTAGCCA 60.774 66.667 0.00 0.00 45.47 4.75
165 166 2.449322 ATCCCAGCCCCTAGCCAG 60.449 66.667 0.00 0.00 45.47 4.85
169 170 4.537433 CAGCCCCTAGCCAGCGTC 62.537 72.222 0.00 0.00 45.47 5.19
171 172 4.840005 GCCCCTAGCCAGCGTCAC 62.840 72.222 0.00 0.00 34.35 3.67
172 173 4.162690 CCCCTAGCCAGCGTCACC 62.163 72.222 0.00 0.00 0.00 4.02
173 174 4.162690 CCCTAGCCAGCGTCACCC 62.163 72.222 0.00 0.00 0.00 4.61
174 175 3.077556 CCTAGCCAGCGTCACCCT 61.078 66.667 0.00 0.00 0.00 4.34
175 176 2.660064 CCTAGCCAGCGTCACCCTT 61.660 63.158 0.00 0.00 0.00 3.95
176 177 1.153549 CTAGCCAGCGTCACCCTTC 60.154 63.158 0.00 0.00 0.00 3.46
177 178 1.608717 CTAGCCAGCGTCACCCTTCT 61.609 60.000 0.00 0.00 0.00 2.85
178 179 1.888436 TAGCCAGCGTCACCCTTCTG 61.888 60.000 0.00 0.00 0.00 3.02
179 180 2.046892 CCAGCGTCACCCTTCTGG 60.047 66.667 0.00 0.00 39.95 3.86
189 190 1.303643 CCCTTCTGGTCACCTTGGC 60.304 63.158 0.00 0.00 0.00 4.52
190 191 1.303643 CCTTCTGGTCACCTTGGCC 60.304 63.158 0.00 0.00 43.98 5.36
211 212 4.847444 GCTTCCCGCCTGAGCTCC 62.847 72.222 12.15 0.00 36.60 4.70
212 213 3.080121 CTTCCCGCCTGAGCTCCT 61.080 66.667 12.15 0.00 36.60 3.69
213 214 3.077556 TTCCCGCCTGAGCTCCTC 61.078 66.667 12.15 0.00 36.60 3.71
216 217 3.535962 CCGCCTGAGCTCCTCCTC 61.536 72.222 12.15 0.00 36.60 3.71
217 218 3.535962 CGCCTGAGCTCCTCCTCC 61.536 72.222 12.15 0.00 36.60 4.30
218 219 3.535962 GCCTGAGCTCCTCCTCCG 61.536 72.222 12.15 0.00 35.50 4.63
219 220 2.837291 CCTGAGCTCCTCCTCCGG 60.837 72.222 12.15 0.00 31.33 5.14
220 221 3.535962 CTGAGCTCCTCCTCCGGC 61.536 72.222 12.15 0.00 0.00 6.13
223 224 4.531426 AGCTCCTCCTCCGGCGAT 62.531 66.667 9.30 0.00 0.00 4.58
224 225 4.292178 GCTCCTCCTCCGGCGATG 62.292 72.222 9.30 0.00 0.00 3.84
225 226 3.610669 CTCCTCCTCCGGCGATGG 61.611 72.222 9.30 10.38 0.00 3.51
244 245 4.531912 CTGCGCGGATGCTTGCAG 62.532 66.667 11.90 11.90 44.98 4.41
246 247 4.527157 GCGCGGATGCTTGCAGTC 62.527 66.667 8.83 0.00 39.65 3.51
247 248 3.869272 CGCGGATGCTTGCAGTCC 61.869 66.667 0.00 7.53 39.65 3.85
248 249 2.437359 GCGGATGCTTGCAGTCCT 60.437 61.111 16.15 0.00 38.39 3.85
249 250 2.042831 GCGGATGCTTGCAGTCCTT 61.043 57.895 16.15 0.00 38.39 3.36
250 251 1.798735 CGGATGCTTGCAGTCCTTG 59.201 57.895 16.15 4.69 0.00 3.61
251 252 1.651240 CGGATGCTTGCAGTCCTTGG 61.651 60.000 16.15 0.00 0.00 3.61
252 253 0.322816 GGATGCTTGCAGTCCTTGGA 60.323 55.000 13.13 0.00 0.00 3.53
253 254 1.684248 GGATGCTTGCAGTCCTTGGAT 60.684 52.381 13.13 0.00 0.00 3.41
254 255 2.097825 GATGCTTGCAGTCCTTGGATT 58.902 47.619 0.87 0.00 0.00 3.01
255 256 1.538047 TGCTTGCAGTCCTTGGATTC 58.462 50.000 0.00 0.00 0.00 2.52
256 257 0.449388 GCTTGCAGTCCTTGGATTCG 59.551 55.000 0.00 0.00 0.00 3.34
257 258 1.813513 CTTGCAGTCCTTGGATTCGT 58.186 50.000 0.00 0.00 0.00 3.85
258 259 2.935238 GCTTGCAGTCCTTGGATTCGTA 60.935 50.000 0.00 0.00 0.00 3.43
259 260 2.380084 TGCAGTCCTTGGATTCGTAC 57.620 50.000 0.00 0.00 0.00 3.67
260 261 1.066430 TGCAGTCCTTGGATTCGTACC 60.066 52.381 0.00 0.00 0.00 3.34
261 262 1.742750 GCAGTCCTTGGATTCGTACCC 60.743 57.143 0.00 0.00 0.00 3.69
262 263 1.134491 CAGTCCTTGGATTCGTACCCC 60.134 57.143 0.00 0.00 0.00 4.95
263 264 0.179092 GTCCTTGGATTCGTACCCCG 60.179 60.000 0.00 0.00 38.13 5.73
264 265 1.145377 CCTTGGATTCGTACCCCGG 59.855 63.158 0.00 0.00 37.11 5.73
265 266 1.523032 CTTGGATTCGTACCCCGGC 60.523 63.158 0.00 0.00 37.11 6.13
266 267 2.246761 CTTGGATTCGTACCCCGGCA 62.247 60.000 0.00 0.00 37.11 5.69
267 268 2.108362 GGATTCGTACCCCGGCAG 59.892 66.667 0.00 0.00 37.11 4.85
268 269 2.108362 GATTCGTACCCCGGCAGG 59.892 66.667 0.00 0.00 37.11 4.85
269 270 4.171103 ATTCGTACCCCGGCAGGC 62.171 66.667 0.00 0.00 37.11 4.85
271 272 3.961225 TTCGTACCCCGGCAGGCTA 62.961 63.158 0.00 0.00 37.11 3.93
272 273 4.217159 CGTACCCCGGCAGGCTAC 62.217 72.222 0.00 0.00 35.76 3.58
273 274 3.078836 GTACCCCGGCAGGCTACA 61.079 66.667 0.00 0.00 35.76 2.74
274 275 3.078836 TACCCCGGCAGGCTACAC 61.079 66.667 0.00 0.00 35.76 2.90
277 278 4.473520 CCCGGCAGGCTACACCAG 62.474 72.222 0.00 0.00 43.14 4.00
278 279 3.390521 CCGGCAGGCTACACCAGA 61.391 66.667 0.00 0.00 43.14 3.86
279 280 2.735772 CCGGCAGGCTACACCAGAT 61.736 63.158 0.00 0.00 43.14 2.90
280 281 1.522355 CGGCAGGCTACACCAGATG 60.522 63.158 0.00 0.00 43.14 2.90
281 282 1.821332 GGCAGGCTACACCAGATGC 60.821 63.158 0.00 0.00 43.14 3.91
282 283 1.078214 GCAGGCTACACCAGATGCA 60.078 57.895 0.00 0.00 43.14 3.96
283 284 1.372087 GCAGGCTACACCAGATGCAC 61.372 60.000 0.00 0.00 43.14 4.57
284 285 0.036105 CAGGCTACACCAGATGCACA 60.036 55.000 0.00 0.00 43.14 4.57
285 286 0.036010 AGGCTACACCAGATGCACAC 60.036 55.000 0.00 0.00 43.14 3.82
286 287 1.361668 GGCTACACCAGATGCACACG 61.362 60.000 0.00 0.00 38.86 4.49
287 288 0.389817 GCTACACCAGATGCACACGA 60.390 55.000 0.00 0.00 0.00 4.35
288 289 1.350193 CTACACCAGATGCACACGAC 58.650 55.000 0.00 0.00 0.00 4.34
289 290 0.388006 TACACCAGATGCACACGACG 60.388 55.000 0.00 0.00 0.00 5.12
290 291 1.664649 CACCAGATGCACACGACGT 60.665 57.895 0.00 0.00 0.00 4.34
291 292 1.372997 ACCAGATGCACACGACGTC 60.373 57.895 5.18 5.18 0.00 4.34
292 293 2.436539 CCAGATGCACACGACGTCG 61.437 63.158 34.58 34.58 46.33 5.12
305 306 2.913613 CGACGTCGTTCATATAGTCCC 58.086 52.381 29.08 0.00 34.11 4.46
306 307 2.661169 CGACGTCGTTCATATAGTCCCG 60.661 54.545 29.08 0.00 34.11 5.14
307 308 1.002033 ACGTCGTTCATATAGTCCCGC 60.002 52.381 0.00 0.00 0.00 6.13
308 309 1.665161 CGTCGTTCATATAGTCCCGCC 60.665 57.143 0.00 0.00 0.00 6.13
309 310 0.594602 TCGTTCATATAGTCCCGCCG 59.405 55.000 0.00 0.00 0.00 6.46
310 311 0.388134 CGTTCATATAGTCCCGCCGG 60.388 60.000 0.00 0.00 0.00 6.13
311 312 0.963962 GTTCATATAGTCCCGCCGGA 59.036 55.000 5.05 0.00 35.01 5.14
312 313 1.342174 GTTCATATAGTCCCGCCGGAA 59.658 52.381 5.05 0.00 40.92 4.30
313 314 1.254026 TCATATAGTCCCGCCGGAAG 58.746 55.000 5.05 0.00 40.92 3.46
314 315 0.966920 CATATAGTCCCGCCGGAAGT 59.033 55.000 5.05 0.00 40.92 3.01
315 316 0.966920 ATATAGTCCCGCCGGAAGTG 59.033 55.000 5.05 0.00 40.92 3.16
316 317 1.741327 TATAGTCCCGCCGGAAGTGC 61.741 60.000 5.05 0.00 40.92 4.40
328 329 3.256281 GAAGTGCCCCTTCTCAAGG 57.744 57.895 6.09 0.00 45.19 3.61
337 338 2.301577 CCTTCTCAAGGTAGCGGAAG 57.698 55.000 10.62 10.62 43.95 3.46
349 350 4.430423 CGGAAGCACTTGTCGCGC 62.430 66.667 0.00 0.00 0.00 6.86
350 351 3.345808 GGAAGCACTTGTCGCGCA 61.346 61.111 8.75 0.00 0.00 6.09
351 352 2.680913 GGAAGCACTTGTCGCGCAT 61.681 57.895 8.75 0.00 0.00 4.73
352 353 1.225854 GAAGCACTTGTCGCGCATC 60.226 57.895 8.75 0.00 0.00 3.91
353 354 1.630244 GAAGCACTTGTCGCGCATCT 61.630 55.000 8.75 0.00 0.00 2.90
354 355 1.630244 AAGCACTTGTCGCGCATCTC 61.630 55.000 8.75 0.00 0.00 2.75
355 356 3.084579 CACTTGTCGCGCATCTCC 58.915 61.111 8.75 0.00 0.00 3.71
356 357 2.507102 ACTTGTCGCGCATCTCCG 60.507 61.111 8.75 0.00 0.00 4.63
357 358 3.257561 CTTGTCGCGCATCTCCGG 61.258 66.667 8.75 0.00 0.00 5.14
382 383 2.512515 GCCTTGCGAGCAGGGTAG 60.513 66.667 23.93 7.66 44.00 3.18
383 384 2.187946 CCTTGCGAGCAGGGTAGG 59.812 66.667 16.82 8.40 38.25 3.18
384 385 2.187946 CTTGCGAGCAGGGTAGGG 59.812 66.667 0.00 0.00 0.00 3.53
385 386 3.391665 CTTGCGAGCAGGGTAGGGG 62.392 68.421 0.00 0.00 0.00 4.79
408 409 3.053896 GGTGCCACTACCGGTTGC 61.054 66.667 15.04 11.87 37.14 4.17
409 410 3.053896 GTGCCACTACCGGTTGCC 61.054 66.667 15.04 3.54 35.96 4.52
410 411 4.338710 TGCCACTACCGGTTGCCC 62.339 66.667 15.04 3.14 35.96 5.36
411 412 4.338710 GCCACTACCGGTTGCCCA 62.339 66.667 15.04 0.00 31.32 5.36
412 413 2.432563 CCACTACCGGTTGCCCAA 59.567 61.111 15.04 0.00 0.00 4.12
413 414 1.969589 CCACTACCGGTTGCCCAAC 60.970 63.158 15.04 2.60 40.45 3.77
414 415 1.228003 CACTACCGGTTGCCCAACA 60.228 57.895 15.04 0.00 42.85 3.33
415 416 1.228033 ACTACCGGTTGCCCAACAC 60.228 57.895 15.04 2.42 42.85 3.32
416 417 1.969589 CTACCGGTTGCCCAACACC 60.970 63.158 15.04 0.00 42.85 4.16
417 418 2.684192 CTACCGGTTGCCCAACACCA 62.684 60.000 15.04 0.00 42.85 4.17
418 419 2.962142 TACCGGTTGCCCAACACCAC 62.962 60.000 15.04 0.00 42.85 4.16
419 420 3.959975 CGGTTGCCCAACACCACG 61.960 66.667 12.65 3.83 42.85 4.94
420 421 4.279043 GGTTGCCCAACACCACGC 62.279 66.667 12.65 0.00 42.85 5.34
421 422 4.279043 GTTGCCCAACACCACGCC 62.279 66.667 6.29 0.00 40.84 5.68
422 423 4.514585 TTGCCCAACACCACGCCT 62.515 61.111 0.00 0.00 0.00 5.52
438 439 3.655481 CTGCGTTTCCACAGGGTC 58.345 61.111 0.00 0.00 34.93 4.46
439 440 1.071471 CTGCGTTTCCACAGGGTCT 59.929 57.895 0.00 0.00 34.93 3.85
440 441 0.535102 CTGCGTTTCCACAGGGTCTT 60.535 55.000 0.00 0.00 34.93 3.01
441 442 0.534203 TGCGTTTCCACAGGGTCTTC 60.534 55.000 0.00 0.00 34.93 2.87
442 443 1.235281 GCGTTTCCACAGGGTCTTCC 61.235 60.000 0.00 0.00 34.93 3.46
443 444 0.949105 CGTTTCCACAGGGTCTTCCG 60.949 60.000 0.00 0.00 41.52 4.30
444 445 1.072505 TTTCCACAGGGTCTTCCGC 59.927 57.895 0.00 0.00 41.52 5.54
445 446 2.725203 TTTCCACAGGGTCTTCCGCG 62.725 60.000 0.00 0.00 41.52 6.46
446 447 3.691342 CCACAGGGTCTTCCGCGA 61.691 66.667 8.23 0.00 41.52 5.87
447 448 2.432628 CACAGGGTCTTCCGCGAC 60.433 66.667 8.23 0.00 41.52 5.19
448 449 4.052229 ACAGGGTCTTCCGCGACG 62.052 66.667 8.23 0.00 41.52 5.12
470 471 3.155167 GGCCTCCTTCGACGGGAT 61.155 66.667 8.26 0.00 31.89 3.85
471 472 2.417936 GCCTCCTTCGACGGGATC 59.582 66.667 8.26 0.17 31.89 3.36
472 473 2.423898 GCCTCCTTCGACGGGATCA 61.424 63.158 8.26 0.00 31.89 2.92
473 474 1.736586 CCTCCTTCGACGGGATCAG 59.263 63.158 8.26 0.00 31.89 2.90
474 475 1.736586 CTCCTTCGACGGGATCAGG 59.263 63.158 8.26 0.00 31.89 3.86
475 476 2.107141 CCTTCGACGGGATCAGGC 59.893 66.667 0.00 0.00 0.00 4.85
476 477 2.278857 CTTCGACGGGATCAGGCG 60.279 66.667 9.11 9.11 42.37 5.52
477 478 4.508128 TTCGACGGGATCAGGCGC 62.508 66.667 10.38 0.00 40.48 6.53
483 484 4.899239 GGGATCAGGCGCCGACAG 62.899 72.222 23.20 12.87 0.00 3.51
484 485 4.899239 GGATCAGGCGCCGACAGG 62.899 72.222 23.20 9.77 41.62 4.00
485 486 3.838271 GATCAGGCGCCGACAGGA 61.838 66.667 23.20 15.07 41.02 3.86
486 487 4.148825 ATCAGGCGCCGACAGGAC 62.149 66.667 23.20 0.00 41.02 3.85
488 489 4.803426 CAGGCGCCGACAGGACTC 62.803 72.222 23.20 0.00 41.02 3.36
494 495 4.436998 CCGACAGGACTCGGCCAC 62.437 72.222 2.24 0.00 46.47 5.01
495 496 4.436998 CGACAGGACTCGGCCACC 62.437 72.222 2.24 0.00 0.00 4.61
496 497 3.311110 GACAGGACTCGGCCACCA 61.311 66.667 2.24 0.00 0.00 4.17
497 498 2.847234 ACAGGACTCGGCCACCAA 60.847 61.111 2.24 0.00 0.00 3.67
498 499 2.391724 GACAGGACTCGGCCACCAAA 62.392 60.000 2.24 0.00 0.00 3.28
499 500 1.966451 CAGGACTCGGCCACCAAAC 60.966 63.158 2.24 0.00 0.00 2.93
500 501 2.671963 GGACTCGGCCACCAAACC 60.672 66.667 2.24 0.00 0.00 3.27
501 502 2.671963 GACTCGGCCACCAAACCC 60.672 66.667 2.24 0.00 0.00 4.11
502 503 3.175710 ACTCGGCCACCAAACCCT 61.176 61.111 2.24 0.00 0.00 4.34
503 504 1.833787 GACTCGGCCACCAAACCCTA 61.834 60.000 2.24 0.00 0.00 3.53
504 505 1.078426 CTCGGCCACCAAACCCTAG 60.078 63.158 2.24 0.00 0.00 3.02
505 506 1.536907 TCGGCCACCAAACCCTAGA 60.537 57.895 2.24 0.00 0.00 2.43
506 507 0.912487 TCGGCCACCAAACCCTAGAT 60.912 55.000 2.24 0.00 0.00 1.98
507 508 0.463833 CGGCCACCAAACCCTAGATC 60.464 60.000 2.24 0.00 0.00 2.75
508 509 0.919710 GGCCACCAAACCCTAGATCT 59.080 55.000 0.00 0.00 0.00 2.75
509 510 1.285078 GGCCACCAAACCCTAGATCTT 59.715 52.381 0.00 0.00 0.00 2.40
510 511 2.369394 GCCACCAAACCCTAGATCTTG 58.631 52.381 0.00 0.00 0.00 3.02
511 512 2.369394 CCACCAAACCCTAGATCTTGC 58.631 52.381 0.00 0.00 0.00 4.01
512 513 2.290896 CCACCAAACCCTAGATCTTGCA 60.291 50.000 0.00 0.00 0.00 4.08
513 514 2.749621 CACCAAACCCTAGATCTTGCAC 59.250 50.000 0.00 0.00 0.00 4.57
514 515 2.644798 ACCAAACCCTAGATCTTGCACT 59.355 45.455 0.00 0.00 0.00 4.40
515 516 3.012518 CCAAACCCTAGATCTTGCACTG 58.987 50.000 0.00 0.00 0.00 3.66
516 517 2.409948 AACCCTAGATCTTGCACTGC 57.590 50.000 0.00 0.00 0.00 4.40
517 518 0.543749 ACCCTAGATCTTGCACTGCC 59.456 55.000 0.00 0.00 0.00 4.85
518 519 0.835941 CCCTAGATCTTGCACTGCCT 59.164 55.000 0.00 0.00 0.00 4.75
519 520 1.202627 CCCTAGATCTTGCACTGCCTC 60.203 57.143 0.00 0.00 0.00 4.70
520 521 1.202627 CCTAGATCTTGCACTGCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
521 522 0.461548 TAGATCTTGCACTGCCTCCG 59.538 55.000 0.00 0.00 0.00 4.63
522 523 1.817099 GATCTTGCACTGCCTCCGG 60.817 63.158 0.00 0.00 0.00 5.14
523 524 2.244117 GATCTTGCACTGCCTCCGGA 62.244 60.000 2.93 2.93 0.00 5.14
524 525 1.630126 ATCTTGCACTGCCTCCGGAT 61.630 55.000 3.57 0.00 0.00 4.18
525 526 1.817099 CTTGCACTGCCTCCGGATC 60.817 63.158 3.57 0.00 0.00 3.36
526 527 2.249413 CTTGCACTGCCTCCGGATCT 62.249 60.000 3.57 0.00 0.00 2.75
527 528 2.202987 GCACTGCCTCCGGATCTG 60.203 66.667 3.57 6.90 0.00 2.90
528 529 2.202987 CACTGCCTCCGGATCTGC 60.203 66.667 3.57 9.36 0.00 4.26
529 530 3.842923 ACTGCCTCCGGATCTGCG 61.843 66.667 3.57 7.69 0.00 5.18
530 531 3.842923 CTGCCTCCGGATCTGCGT 61.843 66.667 3.57 0.00 0.00 5.24
531 532 3.781770 CTGCCTCCGGATCTGCGTC 62.782 68.421 3.57 0.00 0.00 5.19
532 533 4.593864 GCCTCCGGATCTGCGTCC 62.594 72.222 3.57 0.00 34.82 4.79
538 539 2.663188 GGATCTGCGTCCGCCATC 60.663 66.667 9.43 10.14 41.09 3.51
539 540 3.032609 GATCTGCGTCCGCCATCG 61.033 66.667 9.43 0.00 41.09 3.84
540 541 3.484742 GATCTGCGTCCGCCATCGA 62.485 63.158 9.43 0.00 41.09 3.59
541 542 2.755542 GATCTGCGTCCGCCATCGAT 62.756 60.000 9.43 5.98 41.09 3.59
542 543 2.369257 ATCTGCGTCCGCCATCGATT 62.369 55.000 9.43 0.00 41.09 3.34
543 544 2.125310 TGCGTCCGCCATCGATTT 60.125 55.556 9.43 0.00 41.09 2.17
544 545 2.094126 CTGCGTCCGCCATCGATTTC 62.094 60.000 9.43 0.00 41.09 2.17
545 546 1.883084 GCGTCCGCCATCGATTTCT 60.883 57.895 0.00 0.00 38.10 2.52
546 547 1.822250 GCGTCCGCCATCGATTTCTC 61.822 60.000 0.00 0.00 38.10 2.87
547 548 1.215655 CGTCCGCCATCGATTTCTCC 61.216 60.000 0.00 0.00 38.10 3.71
548 549 1.067416 TCCGCCATCGATTTCTCCG 59.933 57.895 0.00 0.00 38.10 4.63
549 550 1.067416 CCGCCATCGATTTCTCCGA 59.933 57.895 0.00 0.00 40.53 4.55
550 551 0.529773 CCGCCATCGATTTCTCCGAA 60.530 55.000 0.00 0.00 39.62 4.30
551 552 0.855349 CGCCATCGATTTCTCCGAAG 59.145 55.000 0.00 0.00 39.62 3.79
552 553 0.583917 GCCATCGATTTCTCCGAAGC 59.416 55.000 0.00 0.00 39.62 3.86
553 554 1.939974 CCATCGATTTCTCCGAAGCA 58.060 50.000 0.00 0.00 39.62 3.91
554 555 1.863454 CCATCGATTTCTCCGAAGCAG 59.137 52.381 0.00 0.00 39.62 4.24
555 556 2.481969 CCATCGATTTCTCCGAAGCAGA 60.482 50.000 0.00 0.00 39.62 4.26
556 557 2.568696 TCGATTTCTCCGAAGCAGAG 57.431 50.000 0.00 0.00 32.64 3.35
557 558 1.135139 TCGATTTCTCCGAAGCAGAGG 59.865 52.381 0.00 0.00 32.64 3.69
558 559 1.135139 CGATTTCTCCGAAGCAGAGGA 59.865 52.381 0.00 0.00 34.93 3.71
559 560 2.797792 CGATTTCTCCGAAGCAGAGGAG 60.798 54.545 13.22 13.22 43.96 3.69
560 561 1.924731 TTTCTCCGAAGCAGAGGAGA 58.075 50.000 16.75 16.75 43.96 3.71
561 562 2.151502 TTCTCCGAAGCAGAGGAGAT 57.848 50.000 19.93 0.00 43.96 2.75
562 563 1.397672 TCTCCGAAGCAGAGGAGATG 58.602 55.000 16.75 0.00 43.96 2.90
563 564 0.249405 CTCCGAAGCAGAGGAGATGC 60.249 60.000 13.94 0.00 43.96 3.91
564 565 1.227497 CCGAAGCAGAGGAGATGCC 60.227 63.158 0.00 0.00 44.97 4.40
573 574 2.524394 GGAGATGCCTAGCCCGGA 60.524 66.667 0.73 0.00 0.00 5.14
574 575 2.140792 GGAGATGCCTAGCCCGGAA 61.141 63.158 0.73 0.00 0.00 4.30
575 576 1.696097 GGAGATGCCTAGCCCGGAAA 61.696 60.000 0.73 0.00 0.00 3.13
576 577 0.533085 GAGATGCCTAGCCCGGAAAC 60.533 60.000 0.73 0.00 0.00 2.78
577 578 1.526225 GATGCCTAGCCCGGAAACC 60.526 63.158 0.73 0.00 0.00 3.27
578 579 2.265467 GATGCCTAGCCCGGAAACCA 62.265 60.000 0.73 0.00 0.00 3.67
579 580 2.437895 GCCTAGCCCGGAAACCAC 60.438 66.667 0.73 0.00 0.00 4.16
580 581 2.271173 CCTAGCCCGGAAACCACC 59.729 66.667 0.73 0.00 0.00 4.61
588 589 2.741211 GGAAACCACCGGTCGCTC 60.741 66.667 2.59 0.00 33.12 5.03
589 590 2.741211 GAAACCACCGGTCGCTCC 60.741 66.667 2.59 0.00 33.12 4.70
590 591 4.324991 AAACCACCGGTCGCTCCC 62.325 66.667 2.59 0.00 33.12 4.30
634 635 2.278206 CGAGGGCTCGTCGACATG 60.278 66.667 17.16 8.37 46.99 3.21
635 636 2.105128 GAGGGCTCGTCGACATGG 59.895 66.667 17.16 5.73 0.00 3.66
636 637 4.148825 AGGGCTCGTCGACATGGC 62.149 66.667 17.16 18.03 0.00 4.40
639 640 4.492160 GCTCGTCGACATGGCCGA 62.492 66.667 17.16 4.82 0.00 5.54
640 641 2.180769 CTCGTCGACATGGCCGAA 59.819 61.111 17.16 0.32 37.81 4.30
641 642 1.874019 CTCGTCGACATGGCCGAAG 60.874 63.158 17.16 14.29 37.81 3.79
721 722 2.799916 GTCGGAGTGACGCACGAC 60.800 66.667 16.64 16.64 46.89 4.34
733 734 3.141488 CACGACGGAGGGGGAGAG 61.141 72.222 0.00 0.00 0.00 3.20
738 739 4.924187 CGGAGGGGGAGAGCGGAT 62.924 72.222 0.00 0.00 0.00 4.18
739 740 2.920384 GGAGGGGGAGAGCGGATC 60.920 72.222 0.00 0.00 0.00 3.36
740 741 3.299190 GAGGGGGAGAGCGGATCG 61.299 72.222 0.00 0.00 0.00 3.69
741 742 4.144727 AGGGGGAGAGCGGATCGT 62.145 66.667 0.00 0.00 0.00 3.73
742 743 3.155167 GGGGGAGAGCGGATCGTT 61.155 66.667 0.00 0.00 0.00 3.85
743 744 2.732619 GGGGGAGAGCGGATCGTTT 61.733 63.158 0.00 0.00 0.00 3.60
744 745 1.521681 GGGGAGAGCGGATCGTTTG 60.522 63.158 0.00 0.00 0.00 2.93
745 746 1.521681 GGGAGAGCGGATCGTTTGG 60.522 63.158 0.00 0.00 0.00 3.28
746 747 1.521681 GGAGAGCGGATCGTTTGGG 60.522 63.158 0.00 0.00 0.00 4.12
747 748 1.521681 GAGAGCGGATCGTTTGGGG 60.522 63.158 0.00 0.00 0.00 4.96
748 749 2.240162 GAGAGCGGATCGTTTGGGGT 62.240 60.000 0.00 0.00 0.00 4.95
749 750 1.376812 GAGCGGATCGTTTGGGGTT 60.377 57.895 0.00 0.00 0.00 4.11
750 751 1.366854 GAGCGGATCGTTTGGGGTTC 61.367 60.000 0.00 0.00 0.00 3.62
751 752 2.746803 GCGGATCGTTTGGGGTTCG 61.747 63.158 0.00 0.00 0.00 3.95
752 753 1.375013 CGGATCGTTTGGGGTTCGT 60.375 57.895 0.00 0.00 0.00 3.85
753 754 1.632046 CGGATCGTTTGGGGTTCGTG 61.632 60.000 0.00 0.00 0.00 4.35
754 755 1.303091 GGATCGTTTGGGGTTCGTGG 61.303 60.000 0.00 0.00 0.00 4.94
755 756 1.302993 ATCGTTTGGGGTTCGTGGG 60.303 57.895 0.00 0.00 0.00 4.61
756 757 1.770749 ATCGTTTGGGGTTCGTGGGA 61.771 55.000 0.00 0.00 0.00 4.37
757 758 1.302993 CGTTTGGGGTTCGTGGGAT 60.303 57.895 0.00 0.00 0.00 3.85
758 759 0.891904 CGTTTGGGGTTCGTGGGATT 60.892 55.000 0.00 0.00 0.00 3.01
759 760 1.611148 CGTTTGGGGTTCGTGGGATTA 60.611 52.381 0.00 0.00 0.00 1.75
760 761 2.730382 GTTTGGGGTTCGTGGGATTAT 58.270 47.619 0.00 0.00 0.00 1.28
761 762 3.093814 GTTTGGGGTTCGTGGGATTATT 58.906 45.455 0.00 0.00 0.00 1.40
762 763 3.459710 TTGGGGTTCGTGGGATTATTT 57.540 42.857 0.00 0.00 0.00 1.40
763 764 3.459710 TGGGGTTCGTGGGATTATTTT 57.540 42.857 0.00 0.00 0.00 1.82
764 765 4.587976 TGGGGTTCGTGGGATTATTTTA 57.412 40.909 0.00 0.00 0.00 1.52
765 766 4.271661 TGGGGTTCGTGGGATTATTTTAC 58.728 43.478 0.00 0.00 0.00 2.01
766 767 3.633525 GGGGTTCGTGGGATTATTTTACC 59.366 47.826 0.00 0.00 0.00 2.85
767 768 4.271661 GGGTTCGTGGGATTATTTTACCA 58.728 43.478 0.00 0.00 0.00 3.25
768 769 4.337274 GGGTTCGTGGGATTATTTTACCAG 59.663 45.833 0.00 0.00 32.84 4.00
769 770 4.945543 GGTTCGTGGGATTATTTTACCAGT 59.054 41.667 0.00 0.00 32.84 4.00
770 771 5.065602 GGTTCGTGGGATTATTTTACCAGTC 59.934 44.000 0.00 0.00 32.84 3.51
771 772 5.687166 TCGTGGGATTATTTTACCAGTCT 57.313 39.130 0.00 0.00 32.84 3.24
777 778 6.775629 TGGGATTATTTTACCAGTCTATTGGC 59.224 38.462 0.00 0.00 42.18 4.52
791 792 8.023706 CCAGTCTATTGGCTTCTTAAGAAAAAC 58.976 37.037 18.25 11.67 33.07 2.43
792 793 8.787852 CAGTCTATTGGCTTCTTAAGAAAAACT 58.212 33.333 18.25 8.26 33.07 2.66
856 863 3.127533 GCATGTCCCTGCCGACAC 61.128 66.667 0.00 0.00 45.19 3.67
922 942 0.531200 CCGCTTTCCTCGTCTACCTT 59.469 55.000 0.00 0.00 0.00 3.50
924 944 1.469423 CGCTTTCCTCGTCTACCTTCC 60.469 57.143 0.00 0.00 0.00 3.46
925 945 1.134759 GCTTTCCTCGTCTACCTTCCC 60.135 57.143 0.00 0.00 0.00 3.97
926 946 2.458620 CTTTCCTCGTCTACCTTCCCT 58.541 52.381 0.00 0.00 0.00 4.20
927 947 1.848652 TTCCTCGTCTACCTTCCCTG 58.151 55.000 0.00 0.00 0.00 4.45
988 1008 3.684788 CAGAACACCGATGAAACCCTAAG 59.315 47.826 0.00 0.00 0.00 2.18
1083 1103 2.291346 CCTCCAAGTTTCCCCCGTTTAT 60.291 50.000 0.00 0.00 0.00 1.40
1129 1150 0.250513 CCTCCTTACCTGTGCCAGAC 59.749 60.000 4.00 0.00 32.44 3.51
1130 1151 0.976641 CTCCTTACCTGTGCCAGACA 59.023 55.000 4.00 0.00 32.44 3.41
1188 1214 9.851686 TTTGTATGATCTTTCTTATAGGTGCAT 57.148 29.630 0.00 0.00 0.00 3.96
1222 1248 5.184864 CCCAGTTGCCATGTAATTAGTTTGA 59.815 40.000 0.00 0.00 0.00 2.69
1223 1249 6.127366 CCCAGTTGCCATGTAATTAGTTTGAT 60.127 38.462 0.00 0.00 0.00 2.57
1225 1251 7.489113 CCAGTTGCCATGTAATTAGTTTGATTC 59.511 37.037 0.00 0.00 0.00 2.52
1230 1256 9.679661 TGCCATGTAATTAGTTTGATTCTCTTA 57.320 29.630 0.00 0.00 0.00 2.10
1356 1391 0.329261 CTGCTCAGGATCCACCCAAA 59.671 55.000 15.82 0.00 40.05 3.28
1394 1429 4.030216 ACAAAAGAAGAAAGAAGGGCCAA 58.970 39.130 6.18 0.00 0.00 4.52
1430 1465 6.971527 TGTTGAAAAGTAAGTCAAACTCGA 57.028 33.333 0.00 0.00 35.60 4.04
1437 1472 0.674534 AAGTCAAACTCGACCTCGCT 59.325 50.000 0.00 0.00 39.60 4.93
1472 1507 8.743085 AACTCTATTATTGTGATCAGCATGTT 57.257 30.769 0.00 0.00 37.40 2.71
1570 1608 6.884295 AGCTAATCAACCATACTTTGCAACTA 59.116 34.615 0.00 0.00 0.00 2.24
1614 1652 6.094048 GTGCTAGCTTCAAAACAATCCTCATA 59.906 38.462 17.23 0.00 0.00 2.15
1664 1703 3.772932 TGTACACAAAGAAACGACGAGT 58.227 40.909 0.00 0.00 0.00 4.18
1670 1709 3.120792 CAAAGAAACGACGAGTTCCTGA 58.879 45.455 0.00 0.00 43.37 3.86
1752 1791 3.387397 AGCATCTGCAAAGTTTCAAAGC 58.613 40.909 4.79 0.00 45.16 3.51
1781 1820 8.736244 GGATACAACAATTCCTTTAGCTTGTTA 58.264 33.333 0.00 0.00 39.19 2.41
1798 1837 7.442656 AGCTTGTTACCACTGTATATATCCAC 58.557 38.462 0.00 0.00 0.00 4.02
1875 1914 6.466885 TCACAGTAGCCTAATTTCCTACTC 57.533 41.667 8.53 0.00 39.64 2.59
1881 1920 6.904093 AGTAGCCTAATTTCCTACTCTTTCCT 59.096 38.462 6.57 0.00 37.77 3.36
1917 1959 4.026744 ACATCTGGCTGTATACTGACTGT 58.973 43.478 15.76 9.53 0.00 3.55
2001 2044 2.291209 TCTGTGAATGCACCCAATGT 57.709 45.000 0.00 0.00 44.51 2.71
2025 2068 5.099575 ACTTGTTTGCGTCTTTAAACCTTG 58.900 37.500 0.00 0.00 36.27 3.61
2053 2096 6.492007 CATTATTTATGGCTGGCTCTACTG 57.508 41.667 2.00 0.00 0.00 2.74
2127 2170 1.001633 GTTCGTAAGCAGGTTGGAGGA 59.998 52.381 0.00 0.00 37.18 3.71
2151 2194 4.021456 TCCTACTACGTATCATGGGCATTG 60.021 45.833 0.00 0.00 0.00 2.82
2196 2239 3.351740 GAGACTGAGGAGTGATGTCAGA 58.648 50.000 5.61 0.00 40.21 3.27
2277 2320 7.681939 AGAGACGGTATTTTATTGCAGAAAA 57.318 32.000 10.08 10.08 0.00 2.29
2289 2332 7.916914 TTATTGCAGAAAACCTACTCTAACC 57.083 36.000 0.00 0.00 0.00 2.85
2305 2348 4.906618 TCTAACCCTCTGTCCATTTTGTC 58.093 43.478 0.00 0.00 0.00 3.18
2504 2575 8.506168 TCTTAATAGCTAAACCAGGATGTTTG 57.494 34.615 0.00 0.00 38.79 2.93
2664 2735 3.478857 TGAAAAGTAAGCCAACTCGGA 57.521 42.857 0.00 0.00 36.56 4.55
2700 2771 7.915293 TCTGTTTGTTATTATTGTGATCGGT 57.085 32.000 0.00 0.00 0.00 4.69
2819 2896 5.875359 CCCTCCCTATCAAAATATAAGACGC 59.125 44.000 0.00 0.00 0.00 5.19
2832 2909 7.948278 AATATAAGACGCTTTTGTAGGCTAG 57.052 36.000 0.00 0.00 0.00 3.42
2869 2947 9.675464 AAAACATCTTATATTTTGGTACGGAGA 57.325 29.630 0.00 0.00 0.00 3.71
3056 3136 0.963962 ATGCCTCACAAACTTGGCTG 59.036 50.000 0.00 0.00 45.11 4.85
3057 3137 1.006922 GCCTCACAAACTTGGCTGC 60.007 57.895 0.00 0.00 41.92 5.25
3062 3142 1.266718 TCACAAACTTGGCTGCGATTC 59.733 47.619 0.00 0.00 0.00 2.52
3067 3147 1.453155 ACTTGGCTGCGATTCGATTT 58.547 45.000 10.88 0.00 0.00 2.17
3069 3149 0.373370 TTGGCTGCGATTCGATTTCG 59.627 50.000 10.88 12.46 39.55 3.46
3156 4095 8.345724 AGCTACTCAATCAGATTTTGTCATTT 57.654 30.769 0.00 0.00 0.00 2.32
3171 4111 6.384258 TTGTCATTTTTCTCGGATGAAACA 57.616 33.333 3.25 0.00 35.91 2.83
3217 4157 7.177744 ACCCTCGCTAAATTTAAATTCTGGAAA 59.822 33.333 13.68 0.00 0.00 3.13
3246 4189 6.953743 CAGTTTTATACCGATTCTCGTTGTTG 59.046 38.462 0.00 0.00 38.40 3.33
3263 4206 2.224042 TGTTGCCAGCTGGATATAGTCG 60.224 50.000 37.21 6.70 37.39 4.18
3288 4231 1.176527 AATTGTGCTTCACCCGATGG 58.823 50.000 0.00 0.00 32.73 3.51
3314 4257 0.663153 AAGGACTCGTTTGTGCTTGC 59.337 50.000 10.43 0.00 44.75 4.01
3322 4265 3.779759 TCGTTTGTGCTTGCAAATCTTT 58.220 36.364 0.00 0.00 40.01 2.52
3446 4389 1.954382 TCCTACTATACAGTGCTGGCG 59.046 52.381 4.11 0.00 36.14 5.69
3641 4584 7.607250 ACAGATAACCTACTTTCACTCTTCAG 58.393 38.462 0.00 0.00 0.00 3.02
3965 4908 1.009829 GTACTGCTTGCATTCCCTCG 58.990 55.000 0.00 0.00 0.00 4.63
4068 5011 7.568349 TGAGCACCTAAAGATGACTATTTGAT 58.432 34.615 0.00 0.00 0.00 2.57
4070 5013 9.717942 GAGCACCTAAAGATGACTATTTGATAT 57.282 33.333 0.00 0.00 0.00 1.63
4110 5053 8.351495 TCTTAAACTGCATCAAACAAATCAAC 57.649 30.769 0.00 0.00 0.00 3.18
4133 5076 7.225784 ACAAATATGTGTTTATCTGTGGCAA 57.774 32.000 0.00 0.00 38.69 4.52
4142 5085 8.458052 TGTGTTTATCTGTGGCAAATGTATAAG 58.542 33.333 0.00 0.00 0.00 1.73
4143 5086 7.432252 GTGTTTATCTGTGGCAAATGTATAAGC 59.568 37.037 0.00 0.00 0.00 3.09
4144 5087 4.818534 ATCTGTGGCAAATGTATAAGCG 57.181 40.909 0.00 0.00 0.00 4.68
4147 5090 5.179533 TCTGTGGCAAATGTATAAGCGTAA 58.820 37.500 0.00 0.00 0.00 3.18
4149 5092 4.201734 TGTGGCAAATGTATAAGCGTAACG 60.202 41.667 0.00 0.00 0.00 3.18
4157 5100 7.558435 AATGTATAAGCGTAACGTACATAGC 57.442 36.000 5.27 0.00 35.56 2.97
4166 5109 2.383442 ACGTACATAGCCCTCTCCAT 57.617 50.000 0.00 0.00 0.00 3.41
4170 5113 3.259374 CGTACATAGCCCTCTCCATCATT 59.741 47.826 0.00 0.00 0.00 2.57
4174 5117 4.660303 ACATAGCCCTCTCCATCATTGTTA 59.340 41.667 0.00 0.00 0.00 2.41
4242 5185 4.142093 GGTTGCTACCGTCTTATGTTCCTA 60.142 45.833 0.36 0.00 34.01 2.94
4296 5239 2.169842 TGCGCATGAAGCATCGAAA 58.830 47.368 5.66 0.00 46.13 3.46
4571 5514 2.363306 TCATCCAGTTTGCCTGTGTT 57.637 45.000 0.00 0.00 39.74 3.32
4654 5598 4.701651 TCAAATCTGGATGCTCTGCTAT 57.298 40.909 0.00 0.00 0.00 2.97
4671 5615 3.627123 TGCTATCCACATATTGTGCACAC 59.373 43.478 21.56 3.50 46.51 3.82
4730 5674 6.537453 TGTTCCAACTTTTTCCTGATTCAA 57.463 33.333 0.00 0.00 0.00 2.69
4746 5690 8.314021 TCCTGATTCAAATGTATATAGACGCAT 58.686 33.333 0.00 0.00 0.00 4.73
4913 5857 0.464373 AGTGCACAACTCACACCCAG 60.464 55.000 21.04 0.00 31.64 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.250770 GGACAGGAACAGGTTGGGTC 60.251 60.000 0.00 0.00 0.00 4.46
1 2 0.697854 AGGACAGGAACAGGTTGGGT 60.698 55.000 0.00 0.00 0.00 4.51
2 3 0.036875 GAGGACAGGAACAGGTTGGG 59.963 60.000 0.00 0.00 0.00 4.12
3 4 0.036875 GGAGGACAGGAACAGGTTGG 59.963 60.000 0.00 0.00 0.00 3.77
4 5 1.059913 AGGAGGACAGGAACAGGTTG 58.940 55.000 0.00 0.00 0.00 3.77
5 6 1.059913 CAGGAGGACAGGAACAGGTT 58.940 55.000 0.00 0.00 0.00 3.50
6 7 0.838122 CCAGGAGGACAGGAACAGGT 60.838 60.000 0.00 0.00 36.89 4.00
7 8 1.986413 CCAGGAGGACAGGAACAGG 59.014 63.158 0.00 0.00 36.89 4.00
8 9 1.298014 GCCAGGAGGACAGGAACAG 59.702 63.158 0.00 0.00 36.89 3.16
9 10 2.583441 CGCCAGGAGGACAGGAACA 61.583 63.158 0.00 0.00 36.89 3.18
10 11 2.232298 CTCGCCAGGAGGACAGGAAC 62.232 65.000 0.00 0.00 39.22 3.62
11 12 1.984570 CTCGCCAGGAGGACAGGAA 60.985 63.158 0.00 0.00 39.22 3.36
12 13 2.363018 CTCGCCAGGAGGACAGGA 60.363 66.667 0.00 0.00 39.22 3.86
13 14 4.154347 GCTCGCCAGGAGGACAGG 62.154 72.222 0.00 0.00 43.36 4.00
14 15 2.454832 TTTGCTCGCCAGGAGGACAG 62.455 60.000 0.00 0.00 43.42 3.51
15 16 2.515979 TTTGCTCGCCAGGAGGACA 61.516 57.895 0.00 0.00 43.42 4.02
16 17 2.035442 GTTTGCTCGCCAGGAGGAC 61.035 63.158 0.00 0.00 43.42 3.85
17 18 2.347490 GTTTGCTCGCCAGGAGGA 59.653 61.111 0.00 0.00 43.36 3.71
18 19 2.032528 TGTTTGCTCGCCAGGAGG 59.967 61.111 0.00 0.00 43.36 4.30
19 20 1.165907 TTGTGTTTGCTCGCCAGGAG 61.166 55.000 0.00 0.00 46.06 3.69
20 21 1.153066 TTGTGTTTGCTCGCCAGGA 60.153 52.632 0.00 0.00 0.00 3.86
21 22 1.008538 GTTGTGTTTGCTCGCCAGG 60.009 57.895 0.00 0.00 0.00 4.45
22 23 1.008538 GGTTGTGTTTGCTCGCCAG 60.009 57.895 0.00 0.00 0.00 4.85
23 24 1.723608 CTGGTTGTGTTTGCTCGCCA 61.724 55.000 0.00 0.00 0.00 5.69
24 25 1.008538 CTGGTTGTGTTTGCTCGCC 60.009 57.895 0.00 0.00 0.00 5.54
25 26 1.008538 CCTGGTTGTGTTTGCTCGC 60.009 57.895 0.00 0.00 0.00 5.03
26 27 1.021202 TTCCTGGTTGTGTTTGCTCG 58.979 50.000 0.00 0.00 0.00 5.03
27 28 3.552890 GGATTTCCTGGTTGTGTTTGCTC 60.553 47.826 0.00 0.00 0.00 4.26
28 29 2.365293 GGATTTCCTGGTTGTGTTTGCT 59.635 45.455 0.00 0.00 0.00 3.91
29 30 2.365293 AGGATTTCCTGGTTGTGTTTGC 59.635 45.455 0.00 0.00 46.55 3.68
55 56 1.883084 GCTCGTTCATGCCTACCGG 60.883 63.158 0.00 0.00 0.00 5.28
56 57 1.883084 GGCTCGTTCATGCCTACCG 60.883 63.158 0.00 0.00 45.26 4.02
57 58 1.883084 CGGCTCGTTCATGCCTACC 60.883 63.158 0.00 0.00 46.42 3.18
58 59 2.526120 GCGGCTCGTTCATGCCTAC 61.526 63.158 0.00 0.00 46.42 3.18
59 60 2.202878 GCGGCTCGTTCATGCCTA 60.203 61.111 0.00 0.00 46.42 3.93
63 64 3.257561 CTCCGCGGCTCGTTCATG 61.258 66.667 23.51 0.00 36.19 3.07
64 65 4.514577 CCTCCGCGGCTCGTTCAT 62.515 66.667 23.51 0.00 36.19 2.57
66 67 4.856607 CTCCTCCGCGGCTCGTTC 62.857 72.222 23.51 0.00 36.19 3.95
77 78 4.095400 TCAGGCTCCCCCTCCTCC 62.095 72.222 0.00 0.00 44.09 4.30
78 79 2.766229 GTCAGGCTCCCCCTCCTC 60.766 72.222 0.00 0.00 44.09 3.71
79 80 4.787280 CGTCAGGCTCCCCCTCCT 62.787 72.222 0.00 0.00 44.09 3.69
80 81 4.779733 TCGTCAGGCTCCCCCTCC 62.780 72.222 0.00 0.00 44.09 4.30
81 82 3.151022 CTCGTCAGGCTCCCCCTC 61.151 72.222 0.00 0.00 44.09 4.30
102 103 3.465403 CTCACTGGGCCTCCTCCG 61.465 72.222 4.53 0.00 0.00 4.63
103 104 3.086600 CCTCACTGGGCCTCCTCC 61.087 72.222 4.53 0.00 0.00 4.30
104 105 3.791586 GCCTCACTGGGCCTCCTC 61.792 72.222 4.53 0.00 45.92 3.71
136 137 1.815421 CTGGGATGGTTCCGCTTCG 60.815 63.158 0.00 0.00 43.63 3.79
137 138 2.115291 GCTGGGATGGTTCCGCTTC 61.115 63.158 0.00 0.00 43.63 3.86
138 139 2.044946 GCTGGGATGGTTCCGCTT 60.045 61.111 0.00 0.00 43.63 4.68
139 140 4.115199 GGCTGGGATGGTTCCGCT 62.115 66.667 0.00 0.00 43.63 5.52
141 142 4.506255 GGGGCTGGGATGGTTCCG 62.506 72.222 0.00 0.00 43.63 4.30
142 143 1.696314 TAGGGGCTGGGATGGTTCC 60.696 63.158 0.00 0.00 41.77 3.62
143 144 1.839894 CTAGGGGCTGGGATGGTTC 59.160 63.158 0.00 0.00 0.00 3.62
144 145 2.386935 GCTAGGGGCTGGGATGGTT 61.387 63.158 0.00 0.00 38.06 3.67
145 146 2.774351 GCTAGGGGCTGGGATGGT 60.774 66.667 0.00 0.00 38.06 3.55
146 147 3.574237 GGCTAGGGGCTGGGATGG 61.574 72.222 0.00 0.00 41.46 3.51
147 148 2.773918 TGGCTAGGGGCTGGGATG 60.774 66.667 0.00 0.00 41.46 3.51
148 149 2.449322 CTGGCTAGGGGCTGGGAT 60.449 66.667 0.00 0.00 41.46 3.85
152 153 4.537433 GACGCTGGCTAGGGGCTG 62.537 72.222 18.34 0.00 41.48 4.85
154 155 4.840005 GTGACGCTGGCTAGGGGC 62.840 72.222 18.34 16.10 44.78 5.80
155 156 4.162690 GGTGACGCTGGCTAGGGG 62.163 72.222 18.34 3.20 40.90 4.79
156 157 4.162690 GGGTGACGCTGGCTAGGG 62.163 72.222 12.79 12.79 42.20 3.53
157 158 2.579684 GAAGGGTGACGCTGGCTAGG 62.580 65.000 1.94 0.00 0.00 3.02
158 159 1.153549 GAAGGGTGACGCTGGCTAG 60.154 63.158 1.94 0.00 0.00 3.42
159 160 1.609501 AGAAGGGTGACGCTGGCTA 60.610 57.895 1.94 0.00 0.00 3.93
160 161 2.925170 AGAAGGGTGACGCTGGCT 60.925 61.111 1.94 1.08 0.00 4.75
161 162 2.743928 CAGAAGGGTGACGCTGGC 60.744 66.667 1.94 0.00 0.00 4.85
162 163 2.046892 CCAGAAGGGTGACGCTGG 60.047 66.667 1.94 0.49 39.17 4.85
171 172 1.303643 GCCAAGGTGACCAGAAGGG 60.304 63.158 3.63 0.00 44.81 3.95
172 173 1.303643 GGCCAAGGTGACCAGAAGG 60.304 63.158 3.63 0.48 42.21 3.46
173 174 1.672356 CGGCCAAGGTGACCAGAAG 60.672 63.158 3.63 0.00 0.00 2.85
174 175 2.429930 CGGCCAAGGTGACCAGAA 59.570 61.111 3.63 0.00 0.00 3.02
175 176 4.329545 GCGGCCAAGGTGACCAGA 62.330 66.667 3.63 0.00 0.00 3.86
195 196 3.080121 AGGAGCTCAGGCGGGAAG 61.080 66.667 17.19 0.00 44.37 3.46
196 197 3.077556 GAGGAGCTCAGGCGGGAA 61.078 66.667 17.19 0.00 44.37 3.97
199 200 3.535962 GAGGAGGAGCTCAGGCGG 61.536 72.222 17.19 0.00 44.37 6.13
200 201 3.535962 GGAGGAGGAGCTCAGGCG 61.536 72.222 17.19 0.00 44.37 5.52
201 202 3.535962 CGGAGGAGGAGCTCAGGC 61.536 72.222 17.19 3.52 39.06 4.85
227 228 4.531912 CTGCAAGCATCCGCGCAG 62.532 66.667 8.75 0.00 43.22 5.18
229 230 4.527157 GACTGCAAGCATCCGCGC 62.527 66.667 0.00 0.00 45.49 6.86
230 231 3.869272 GGACTGCAAGCATCCGCG 61.869 66.667 0.00 0.00 45.49 6.46
231 232 2.042831 AAGGACTGCAAGCATCCGC 61.043 57.895 13.83 0.00 37.60 5.54
232 233 1.651240 CCAAGGACTGCAAGCATCCG 61.651 60.000 13.83 0.00 37.60 4.18
233 234 0.322816 TCCAAGGACTGCAAGCATCC 60.323 55.000 12.59 12.59 37.60 3.51
234 235 1.760192 ATCCAAGGACTGCAAGCATC 58.240 50.000 0.00 0.00 37.60 3.91
235 236 2.097825 GAATCCAAGGACTGCAAGCAT 58.902 47.619 0.00 0.00 37.60 3.79
236 237 1.538047 GAATCCAAGGACTGCAAGCA 58.462 50.000 0.00 0.00 37.60 3.91
237 238 0.449388 CGAATCCAAGGACTGCAAGC 59.551 55.000 0.00 0.00 37.60 4.01
238 239 1.813513 ACGAATCCAAGGACTGCAAG 58.186 50.000 0.00 0.00 42.29 4.01
239 240 2.614481 GGTACGAATCCAAGGACTGCAA 60.614 50.000 0.00 0.00 0.00 4.08
240 241 1.066430 GGTACGAATCCAAGGACTGCA 60.066 52.381 0.00 0.00 0.00 4.41
241 242 1.653151 GGTACGAATCCAAGGACTGC 58.347 55.000 0.00 0.00 0.00 4.40
242 243 1.134491 GGGGTACGAATCCAAGGACTG 60.134 57.143 0.00 0.00 0.00 3.51
243 244 1.201424 GGGGTACGAATCCAAGGACT 58.799 55.000 0.00 0.00 0.00 3.85
244 245 3.774616 GGGGTACGAATCCAAGGAC 57.225 57.895 0.00 0.00 0.00 3.85
257 258 3.078836 GTGTAGCCTGCCGGGGTA 61.079 66.667 2.18 0.00 45.03 3.69
260 261 4.473520 CTGGTGTAGCCTGCCGGG 62.474 72.222 2.18 0.00 38.35 5.73
261 262 2.735772 ATCTGGTGTAGCCTGCCGG 61.736 63.158 0.00 0.00 38.35 6.13
262 263 1.522355 CATCTGGTGTAGCCTGCCG 60.522 63.158 0.00 0.00 38.35 5.69
263 264 1.821332 GCATCTGGTGTAGCCTGCC 60.821 63.158 0.00 0.00 38.35 4.85
264 265 1.078214 TGCATCTGGTGTAGCCTGC 60.078 57.895 0.00 0.00 38.35 4.85
265 266 0.036105 TGTGCATCTGGTGTAGCCTG 60.036 55.000 0.00 0.00 38.35 4.85
266 267 0.036010 GTGTGCATCTGGTGTAGCCT 60.036 55.000 0.00 0.00 38.35 4.58
267 268 1.361668 CGTGTGCATCTGGTGTAGCC 61.362 60.000 0.00 0.00 37.90 3.93
268 269 0.389817 TCGTGTGCATCTGGTGTAGC 60.390 55.000 0.00 0.00 0.00 3.58
269 270 1.350193 GTCGTGTGCATCTGGTGTAG 58.650 55.000 0.00 0.00 0.00 2.74
270 271 0.388006 CGTCGTGTGCATCTGGTGTA 60.388 55.000 0.00 0.00 0.00 2.90
271 272 1.664649 CGTCGTGTGCATCTGGTGT 60.665 57.895 0.00 0.00 0.00 4.16
272 273 1.617755 GACGTCGTGTGCATCTGGTG 61.618 60.000 0.63 0.00 0.00 4.17
273 274 1.372997 GACGTCGTGTGCATCTGGT 60.373 57.895 0.63 0.00 0.00 4.00
274 275 2.436539 CGACGTCGTGTGCATCTGG 61.437 63.158 29.08 0.00 34.11 3.86
275 276 3.064178 CGACGTCGTGTGCATCTG 58.936 61.111 29.08 0.00 34.11 2.90
285 286 2.661169 CGGGACTATATGAACGACGTCG 60.661 54.545 34.58 34.58 46.33 5.12
286 287 2.913613 CGGGACTATATGAACGACGTC 58.086 52.381 5.18 5.18 0.00 4.34
287 288 1.002033 GCGGGACTATATGAACGACGT 60.002 52.381 0.00 0.00 0.00 4.34
288 289 1.665161 GGCGGGACTATATGAACGACG 60.665 57.143 0.00 0.00 0.00 5.12
289 290 1.665161 CGGCGGGACTATATGAACGAC 60.665 57.143 0.00 0.00 0.00 4.34
290 291 0.594602 CGGCGGGACTATATGAACGA 59.405 55.000 0.00 0.00 0.00 3.85
291 292 0.388134 CCGGCGGGACTATATGAACG 60.388 60.000 20.56 0.00 34.06 3.95
292 293 0.963962 TCCGGCGGGACTATATGAAC 59.036 55.000 27.98 0.00 37.43 3.18
293 294 1.616865 CTTCCGGCGGGACTATATGAA 59.383 52.381 27.98 8.47 43.74 2.57
294 295 1.254026 CTTCCGGCGGGACTATATGA 58.746 55.000 27.98 0.00 43.74 2.15
295 296 0.966920 ACTTCCGGCGGGACTATATG 59.033 55.000 27.98 6.73 43.74 1.78
296 297 0.966920 CACTTCCGGCGGGACTATAT 59.033 55.000 27.98 1.81 43.74 0.86
297 298 1.741327 GCACTTCCGGCGGGACTATA 61.741 60.000 27.98 1.38 43.74 1.31
298 299 3.090219 GCACTTCCGGCGGGACTAT 62.090 63.158 27.98 4.58 43.74 2.12
299 300 3.766691 GCACTTCCGGCGGGACTA 61.767 66.667 27.98 2.78 43.74 2.59
318 319 4.308149 TGCTTCCGCTACCTTGAGAAGG 62.308 54.545 0.58 0.58 45.21 3.46
319 320 1.066858 TGCTTCCGCTACCTTGAGAAG 60.067 52.381 0.00 0.00 37.57 2.85
320 321 0.973632 TGCTTCCGCTACCTTGAGAA 59.026 50.000 0.00 0.00 36.97 2.87
321 322 0.246635 GTGCTTCCGCTACCTTGAGA 59.753 55.000 0.00 0.00 36.97 3.27
322 323 0.247736 AGTGCTTCCGCTACCTTGAG 59.752 55.000 0.00 0.00 36.97 3.02
323 324 0.685097 AAGTGCTTCCGCTACCTTGA 59.315 50.000 0.00 0.00 36.97 3.02
324 325 0.798776 CAAGTGCTTCCGCTACCTTG 59.201 55.000 0.00 0.00 36.97 3.61
325 326 0.396811 ACAAGTGCTTCCGCTACCTT 59.603 50.000 0.00 0.00 36.97 3.50
326 327 0.037232 GACAAGTGCTTCCGCTACCT 60.037 55.000 0.00 0.00 36.97 3.08
327 328 1.352156 CGACAAGTGCTTCCGCTACC 61.352 60.000 0.00 0.00 36.97 3.18
328 329 1.956620 GCGACAAGTGCTTCCGCTAC 61.957 60.000 15.90 0.00 38.10 3.58
329 330 1.736645 GCGACAAGTGCTTCCGCTA 60.737 57.895 15.90 0.00 38.10 4.26
330 331 3.044305 GCGACAAGTGCTTCCGCT 61.044 61.111 15.90 0.00 38.10 5.52
331 332 4.430423 CGCGACAAGTGCTTCCGC 62.430 66.667 0.00 14.20 37.90 5.54
338 339 2.792290 CGGAGATGCGCGACAAGTG 61.792 63.158 12.10 0.00 0.00 3.16
339 340 2.507102 CGGAGATGCGCGACAAGT 60.507 61.111 12.10 0.00 0.00 3.16
340 341 3.257561 CCGGAGATGCGCGACAAG 61.258 66.667 12.10 0.00 0.00 3.16
365 366 2.512515 CTACCCTGCTCGCAAGGC 60.513 66.667 6.46 0.00 30.90 4.35
366 367 2.187946 CCTACCCTGCTCGCAAGG 59.812 66.667 5.03 5.03 33.89 3.61
367 368 2.187946 CCCTACCCTGCTCGCAAG 59.812 66.667 0.00 0.00 0.00 4.01
368 369 3.399181 CCCCTACCCTGCTCGCAA 61.399 66.667 0.00 0.00 0.00 4.85
391 392 3.053896 GCAACCGGTAGTGGCACC 61.054 66.667 15.27 0.00 45.71 5.01
404 405 4.279043 GGCGTGGTGTTGGGCAAC 62.279 66.667 0.00 0.00 41.50 4.17
405 406 4.514585 AGGCGTGGTGTTGGGCAA 62.515 61.111 0.00 0.00 0.00 4.52
423 424 1.235281 GGAAGACCCTGTGGAAACGC 61.235 60.000 0.00 0.00 42.66 4.84
424 425 0.949105 CGGAAGACCCTGTGGAAACG 60.949 60.000 0.00 0.00 34.81 3.60
425 426 1.235281 GCGGAAGACCCTGTGGAAAC 61.235 60.000 0.00 0.00 34.81 2.78
426 427 1.072505 GCGGAAGACCCTGTGGAAA 59.927 57.895 0.00 0.00 34.81 3.13
427 428 2.747686 GCGGAAGACCCTGTGGAA 59.252 61.111 0.00 0.00 34.81 3.53
428 429 3.691342 CGCGGAAGACCCTGTGGA 61.691 66.667 0.00 0.00 34.81 4.02
429 430 3.691342 TCGCGGAAGACCCTGTGG 61.691 66.667 6.13 0.00 37.80 4.17
430 431 2.432628 GTCGCGGAAGACCCTGTG 60.433 66.667 6.13 0.00 35.22 3.66
431 432 4.052229 CGTCGCGGAAGACCCTGT 62.052 66.667 6.13 0.00 37.85 4.00
453 454 3.153270 GATCCCGTCGAAGGAGGCC 62.153 68.421 19.75 0.00 36.67 5.19
454 455 2.356818 CTGATCCCGTCGAAGGAGGC 62.357 65.000 19.75 9.67 36.67 4.70
455 456 1.736586 CTGATCCCGTCGAAGGAGG 59.263 63.158 19.75 2.99 36.67 4.30
456 457 1.736586 CCTGATCCCGTCGAAGGAG 59.263 63.158 19.75 7.86 36.67 3.69
457 458 2.423898 GCCTGATCCCGTCGAAGGA 61.424 63.158 19.75 13.46 37.93 3.36
458 459 2.107141 GCCTGATCCCGTCGAAGG 59.893 66.667 10.80 10.80 0.00 3.46
459 460 2.278857 CGCCTGATCCCGTCGAAG 60.279 66.667 0.00 0.00 0.00 3.79
460 461 4.508128 GCGCCTGATCCCGTCGAA 62.508 66.667 0.00 0.00 0.00 3.71
466 467 4.899239 CTGTCGGCGCCTGATCCC 62.899 72.222 26.68 11.91 0.00 3.85
467 468 4.899239 CCTGTCGGCGCCTGATCC 62.899 72.222 26.68 12.59 0.00 3.36
468 469 3.838271 TCCTGTCGGCGCCTGATC 61.838 66.667 26.68 16.63 0.00 2.92
469 470 4.148825 GTCCTGTCGGCGCCTGAT 62.149 66.667 26.68 0.00 0.00 2.90
471 472 4.803426 GAGTCCTGTCGGCGCCTG 62.803 72.222 26.68 18.23 0.00 4.85
478 479 4.436998 GGTGGCCGAGTCCTGTCG 62.437 72.222 0.00 0.00 39.77 4.35
479 480 2.391724 TTTGGTGGCCGAGTCCTGTC 62.392 60.000 0.00 0.00 0.00 3.51
480 481 2.448582 TTTGGTGGCCGAGTCCTGT 61.449 57.895 0.00 0.00 0.00 4.00
481 482 1.966451 GTTTGGTGGCCGAGTCCTG 60.966 63.158 0.00 0.00 0.00 3.86
482 483 2.430367 GTTTGGTGGCCGAGTCCT 59.570 61.111 0.00 0.00 0.00 3.85
483 484 2.671963 GGTTTGGTGGCCGAGTCC 60.672 66.667 0.00 0.00 0.00 3.85
484 485 1.833787 TAGGGTTTGGTGGCCGAGTC 61.834 60.000 0.00 0.00 0.00 3.36
485 486 1.838073 CTAGGGTTTGGTGGCCGAGT 61.838 60.000 0.00 0.00 0.00 4.18
486 487 1.078426 CTAGGGTTTGGTGGCCGAG 60.078 63.158 0.00 0.00 0.00 4.63
487 488 0.912487 ATCTAGGGTTTGGTGGCCGA 60.912 55.000 0.00 0.00 0.00 5.54
488 489 0.463833 GATCTAGGGTTTGGTGGCCG 60.464 60.000 0.00 0.00 0.00 6.13
489 490 0.919710 AGATCTAGGGTTTGGTGGCC 59.080 55.000 0.00 0.00 0.00 5.36
490 491 2.369394 CAAGATCTAGGGTTTGGTGGC 58.631 52.381 0.00 0.00 0.00 5.01
491 492 2.290896 TGCAAGATCTAGGGTTTGGTGG 60.291 50.000 0.00 0.00 0.00 4.61
492 493 2.749621 GTGCAAGATCTAGGGTTTGGTG 59.250 50.000 0.00 0.00 0.00 4.17
493 494 2.644798 AGTGCAAGATCTAGGGTTTGGT 59.355 45.455 0.00 0.00 0.00 3.67
494 495 3.012518 CAGTGCAAGATCTAGGGTTTGG 58.987 50.000 0.00 0.00 0.00 3.28
495 496 2.421424 GCAGTGCAAGATCTAGGGTTTG 59.579 50.000 11.09 0.00 0.00 2.93
496 497 2.619074 GGCAGTGCAAGATCTAGGGTTT 60.619 50.000 18.61 0.00 0.00 3.27
497 498 1.065126 GGCAGTGCAAGATCTAGGGTT 60.065 52.381 18.61 0.00 0.00 4.11
498 499 0.543749 GGCAGTGCAAGATCTAGGGT 59.456 55.000 18.61 0.00 0.00 4.34
499 500 0.835941 AGGCAGTGCAAGATCTAGGG 59.164 55.000 18.61 0.00 0.00 3.53
500 501 1.202627 GGAGGCAGTGCAAGATCTAGG 60.203 57.143 18.61 0.00 0.00 3.02
501 502 1.537776 CGGAGGCAGTGCAAGATCTAG 60.538 57.143 18.61 4.44 0.00 2.43
502 503 0.461548 CGGAGGCAGTGCAAGATCTA 59.538 55.000 18.61 0.00 0.00 1.98
503 504 1.220206 CGGAGGCAGTGCAAGATCT 59.780 57.895 18.61 3.71 0.00 2.75
504 505 1.817099 CCGGAGGCAGTGCAAGATC 60.817 63.158 18.61 8.74 46.14 2.75
505 506 2.270205 CCGGAGGCAGTGCAAGAT 59.730 61.111 18.61 0.00 46.14 2.40
521 522 2.663188 GATGGCGGACGCAGATCC 60.663 66.667 18.95 0.97 44.11 3.36
522 523 2.755542 ATCGATGGCGGACGCAGATC 62.756 60.000 18.95 16.24 44.11 2.75
523 524 2.369257 AATCGATGGCGGACGCAGAT 62.369 55.000 18.95 13.23 44.11 2.90
524 525 2.572095 AAATCGATGGCGGACGCAGA 62.572 55.000 18.95 11.62 44.11 4.26
525 526 2.094126 GAAATCGATGGCGGACGCAG 62.094 60.000 18.95 6.69 44.11 5.18
526 527 2.125310 AAATCGATGGCGGACGCA 60.125 55.556 18.95 5.23 44.11 5.24
527 528 1.822250 GAGAAATCGATGGCGGACGC 61.822 60.000 8.39 8.39 38.28 5.19
528 529 1.215655 GGAGAAATCGATGGCGGACG 61.216 60.000 0.00 0.00 38.28 4.79
529 530 1.215655 CGGAGAAATCGATGGCGGAC 61.216 60.000 0.00 0.00 38.28 4.79
530 531 1.067416 CGGAGAAATCGATGGCGGA 59.933 57.895 0.00 0.00 38.28 5.54
531 532 0.529773 TTCGGAGAAATCGATGGCGG 60.530 55.000 0.00 0.00 45.90 6.13
532 533 0.855349 CTTCGGAGAAATCGATGGCG 59.145 55.000 0.00 0.00 45.90 5.69
533 534 0.583917 GCTTCGGAGAAATCGATGGC 59.416 55.000 0.00 0.00 45.90 4.40
534 535 1.863454 CTGCTTCGGAGAAATCGATGG 59.137 52.381 0.00 0.00 45.90 3.51
535 536 2.793790 CTCTGCTTCGGAGAAATCGATG 59.206 50.000 0.00 0.00 45.90 3.84
536 537 2.223923 CCTCTGCTTCGGAGAAATCGAT 60.224 50.000 0.00 0.00 45.90 3.59
537 538 1.135139 CCTCTGCTTCGGAGAAATCGA 59.865 52.381 0.00 0.00 45.90 3.59
538 539 1.135139 TCCTCTGCTTCGGAGAAATCG 59.865 52.381 0.00 0.00 45.90 3.34
539 540 2.969628 TCCTCTGCTTCGGAGAAATC 57.030 50.000 0.00 0.00 45.90 2.17
544 545 0.249405 GCATCTCCTCTGCTTCGGAG 60.249 60.000 8.79 8.79 46.52 4.63
545 546 1.680522 GGCATCTCCTCTGCTTCGGA 61.681 60.000 0.00 0.00 39.60 4.55
546 547 1.227497 GGCATCTCCTCTGCTTCGG 60.227 63.158 0.00 0.00 39.60 4.30
547 548 1.000385 CTAGGCATCTCCTCTGCTTCG 60.000 57.143 0.00 0.00 43.20 3.79
548 549 1.270252 GCTAGGCATCTCCTCTGCTTC 60.270 57.143 0.00 0.00 43.20 3.86
549 550 0.758123 GCTAGGCATCTCCTCTGCTT 59.242 55.000 0.00 0.00 43.20 3.91
550 551 1.120795 GGCTAGGCATCTCCTCTGCT 61.121 60.000 12.16 0.00 43.20 4.24
551 552 1.370810 GGCTAGGCATCTCCTCTGC 59.629 63.158 12.16 0.00 43.20 4.26
552 553 1.814772 CGGGCTAGGCATCTCCTCTG 61.815 65.000 19.14 0.00 43.20 3.35
553 554 1.532794 CGGGCTAGGCATCTCCTCT 60.533 63.158 19.14 0.00 43.20 3.69
554 555 2.578714 CCGGGCTAGGCATCTCCTC 61.579 68.421 19.14 0.00 43.20 3.71
556 557 1.696097 TTTCCGGGCTAGGCATCTCC 61.696 60.000 19.14 0.00 0.00 3.71
557 558 0.533085 GTTTCCGGGCTAGGCATCTC 60.533 60.000 19.14 0.00 0.00 2.75
558 559 1.527370 GTTTCCGGGCTAGGCATCT 59.473 57.895 19.14 0.00 0.00 2.90
559 560 1.526225 GGTTTCCGGGCTAGGCATC 60.526 63.158 19.14 0.15 0.00 3.91
560 561 2.305607 TGGTTTCCGGGCTAGGCAT 61.306 57.895 19.14 0.00 0.00 4.40
561 562 2.931105 TGGTTTCCGGGCTAGGCA 60.931 61.111 19.14 0.00 0.00 4.75
562 563 2.437895 GTGGTTTCCGGGCTAGGC 60.438 66.667 8.00 8.00 0.00 3.93
563 564 2.271173 GGTGGTTTCCGGGCTAGG 59.729 66.667 0.00 0.00 0.00 3.02
564 565 2.125269 CGGTGGTTTCCGGGCTAG 60.125 66.667 0.00 0.00 45.88 3.42
571 572 2.741211 GAGCGACCGGTGGTTTCC 60.741 66.667 14.63 0.00 35.25 3.13
572 573 2.741211 GGAGCGACCGGTGGTTTC 60.741 66.667 14.63 13.21 35.25 2.78
573 574 4.324991 GGGAGCGACCGGTGGTTT 62.325 66.667 14.63 3.09 35.25 3.27
602 603 3.966026 CTCGTTCCGTCACCTCCGC 62.966 68.421 0.00 0.00 0.00 5.54
603 604 2.178521 CTCGTTCCGTCACCTCCG 59.821 66.667 0.00 0.00 0.00 4.63
604 605 2.572284 CCTCGTTCCGTCACCTCC 59.428 66.667 0.00 0.00 0.00 4.30
605 606 2.572284 CCCTCGTTCCGTCACCTC 59.428 66.667 0.00 0.00 0.00 3.85
606 607 3.692406 GCCCTCGTTCCGTCACCT 61.692 66.667 0.00 0.00 0.00 4.00
607 608 3.644399 GAGCCCTCGTTCCGTCACC 62.644 68.421 0.00 0.00 0.00 4.02
608 609 2.126031 GAGCCCTCGTTCCGTCAC 60.126 66.667 0.00 0.00 0.00 3.67
609 610 3.744719 CGAGCCCTCGTTCCGTCA 61.745 66.667 9.41 0.00 46.99 4.35
618 619 2.105128 CCATGTCGACGAGCCCTC 59.895 66.667 11.62 0.00 0.00 4.30
619 620 4.148825 GCCATGTCGACGAGCCCT 62.149 66.667 11.62 0.00 0.00 5.19
622 623 3.982372 TTCGGCCATGTCGACGAGC 62.982 63.158 11.62 12.99 40.10 5.03
623 624 1.874019 CTTCGGCCATGTCGACGAG 60.874 63.158 11.62 5.55 40.10 4.18
624 625 2.180769 CTTCGGCCATGTCGACGA 59.819 61.111 11.62 1.99 40.10 4.20
625 626 2.885644 CCTTCGGCCATGTCGACG 60.886 66.667 11.62 6.56 40.10 5.12
626 627 2.511600 CCCTTCGGCCATGTCGAC 60.512 66.667 9.11 9.11 40.10 4.20
627 628 3.781307 CCCCTTCGGCCATGTCGA 61.781 66.667 2.24 4.58 38.09 4.20
628 629 4.856801 CCCCCTTCGGCCATGTCG 62.857 72.222 2.24 0.00 0.00 4.35
704 705 2.799916 GTCGTGCGTCACTCCGAC 60.800 66.667 8.07 0.00 42.22 4.79
705 706 4.379143 CGTCGTGCGTCACTCCGA 62.379 66.667 8.07 0.00 35.54 4.55
707 708 3.948086 CTCCGTCGTGCGTCACTCC 62.948 68.421 8.07 0.00 39.32 3.85
708 709 2.502080 CTCCGTCGTGCGTCACTC 60.502 66.667 8.07 1.89 39.32 3.51
709 710 4.039357 CCTCCGTCGTGCGTCACT 62.039 66.667 8.07 0.00 39.32 3.41
716 717 3.141488 CTCTCCCCCTCCGTCGTG 61.141 72.222 0.00 0.00 0.00 4.35
721 722 4.924187 ATCCGCTCTCCCCCTCCG 62.924 72.222 0.00 0.00 0.00 4.63
722 723 2.920384 GATCCGCTCTCCCCCTCC 60.920 72.222 0.00 0.00 0.00 4.30
723 724 3.299190 CGATCCGCTCTCCCCCTC 61.299 72.222 0.00 0.00 0.00 4.30
724 725 3.680920 AACGATCCGCTCTCCCCCT 62.681 63.158 0.00 0.00 0.00 4.79
725 726 2.732619 AAACGATCCGCTCTCCCCC 61.733 63.158 0.00 0.00 0.00 5.40
726 727 1.521681 CAAACGATCCGCTCTCCCC 60.522 63.158 0.00 0.00 0.00 4.81
727 728 1.521681 CCAAACGATCCGCTCTCCC 60.522 63.158 0.00 0.00 0.00 4.30
728 729 1.521681 CCCAAACGATCCGCTCTCC 60.522 63.158 0.00 0.00 0.00 3.71
729 730 1.521681 CCCCAAACGATCCGCTCTC 60.522 63.158 0.00 0.00 0.00 3.20
730 731 1.838073 AACCCCAAACGATCCGCTCT 61.838 55.000 0.00 0.00 0.00 4.09
731 732 1.366854 GAACCCCAAACGATCCGCTC 61.367 60.000 0.00 0.00 0.00 5.03
732 733 1.376812 GAACCCCAAACGATCCGCT 60.377 57.895 0.00 0.00 0.00 5.52
733 734 2.746803 CGAACCCCAAACGATCCGC 61.747 63.158 0.00 0.00 0.00 5.54
734 735 1.375013 ACGAACCCCAAACGATCCG 60.375 57.895 0.00 0.00 0.00 4.18
735 736 1.303091 CCACGAACCCCAAACGATCC 61.303 60.000 0.00 0.00 0.00 3.36
736 737 1.303091 CCCACGAACCCCAAACGATC 61.303 60.000 0.00 0.00 0.00 3.69
737 738 1.302993 CCCACGAACCCCAAACGAT 60.303 57.895 0.00 0.00 0.00 3.73
738 739 1.770749 ATCCCACGAACCCCAAACGA 61.771 55.000 0.00 0.00 0.00 3.85
739 740 0.891904 AATCCCACGAACCCCAAACG 60.892 55.000 0.00 0.00 0.00 3.60
740 741 2.203470 TAATCCCACGAACCCCAAAC 57.797 50.000 0.00 0.00 0.00 2.93
741 742 3.459710 AATAATCCCACGAACCCCAAA 57.540 42.857 0.00 0.00 0.00 3.28
742 743 3.459710 AAATAATCCCACGAACCCCAA 57.540 42.857 0.00 0.00 0.00 4.12
743 744 3.459710 AAAATAATCCCACGAACCCCA 57.540 42.857 0.00 0.00 0.00 4.96
744 745 3.633525 GGTAAAATAATCCCACGAACCCC 59.366 47.826 0.00 0.00 0.00 4.95
745 746 4.271661 TGGTAAAATAATCCCACGAACCC 58.728 43.478 0.00 0.00 0.00 4.11
746 747 4.945543 ACTGGTAAAATAATCCCACGAACC 59.054 41.667 0.00 0.00 0.00 3.62
747 748 5.878669 AGACTGGTAAAATAATCCCACGAAC 59.121 40.000 0.00 0.00 0.00 3.95
748 749 6.057321 AGACTGGTAAAATAATCCCACGAA 57.943 37.500 0.00 0.00 0.00 3.85
749 750 5.687166 AGACTGGTAAAATAATCCCACGA 57.313 39.130 0.00 0.00 0.00 4.35
750 751 7.041372 CCAATAGACTGGTAAAATAATCCCACG 60.041 40.741 0.00 0.00 0.00 4.94
751 752 7.255486 GCCAATAGACTGGTAAAATAATCCCAC 60.255 40.741 0.00 0.00 38.86 4.61
752 753 6.775629 GCCAATAGACTGGTAAAATAATCCCA 59.224 38.462 0.00 0.00 38.86 4.37
753 754 7.004691 AGCCAATAGACTGGTAAAATAATCCC 58.995 38.462 0.00 0.00 38.86 3.85
754 755 8.465273 AAGCCAATAGACTGGTAAAATAATCC 57.535 34.615 0.00 0.00 38.86 3.01
755 756 9.343539 AGAAGCCAATAGACTGGTAAAATAATC 57.656 33.333 0.00 0.00 38.86 1.75
756 757 9.700831 AAGAAGCCAATAGACTGGTAAAATAAT 57.299 29.630 0.00 0.00 38.86 1.28
759 760 9.178758 CTTAAGAAGCCAATAGACTGGTAAAAT 57.821 33.333 0.00 0.00 38.86 1.82
760 761 8.380099 TCTTAAGAAGCCAATAGACTGGTAAAA 58.620 33.333 1.68 0.00 38.86 1.52
761 762 7.913789 TCTTAAGAAGCCAATAGACTGGTAAA 58.086 34.615 1.68 0.00 38.86 2.01
762 763 7.490657 TCTTAAGAAGCCAATAGACTGGTAA 57.509 36.000 1.68 0.00 38.86 2.85
763 764 7.490657 TTCTTAAGAAGCCAATAGACTGGTA 57.509 36.000 13.99 0.00 38.86 3.25
764 765 6.374417 TTCTTAAGAAGCCAATAGACTGGT 57.626 37.500 13.99 0.00 38.86 4.00
765 766 7.687941 TTTTCTTAAGAAGCCAATAGACTGG 57.312 36.000 17.05 0.00 39.71 4.00
766 767 8.787852 AGTTTTTCTTAAGAAGCCAATAGACTG 58.212 33.333 17.05 0.00 35.21 3.51
767 768 8.926092 AGTTTTTCTTAAGAAGCCAATAGACT 57.074 30.769 17.05 9.63 35.21 3.24
768 769 9.004717 AGAGTTTTTCTTAAGAAGCCAATAGAC 57.995 33.333 17.05 7.71 35.21 2.59
924 944 4.486503 GGAGCAGAGGCAGGCAGG 62.487 72.222 0.00 0.00 44.61 4.85
925 945 3.388703 GAGGAGCAGAGGCAGGCAG 62.389 68.421 0.00 0.00 44.61 4.85
926 946 3.397439 GAGGAGCAGAGGCAGGCA 61.397 66.667 0.00 0.00 44.61 4.75
927 947 4.173924 GGAGGAGCAGAGGCAGGC 62.174 72.222 0.00 0.00 44.61 4.85
1188 1214 1.257055 GGCAACTGGGGCAGCATTTA 61.257 55.000 0.00 0.00 34.37 1.40
1201 1227 8.353423 AGAATCAAACTAATTACATGGCAACT 57.647 30.769 0.00 0.00 37.61 3.16
1222 1248 8.946085 TGACAGAATTAAAACGCATAAGAGAAT 58.054 29.630 0.00 0.00 0.00 2.40
1223 1249 8.317891 TGACAGAATTAAAACGCATAAGAGAA 57.682 30.769 0.00 0.00 0.00 2.87
1225 1251 9.559958 AAATGACAGAATTAAAACGCATAAGAG 57.440 29.630 0.00 0.00 0.00 2.85
1230 1256 7.544217 GGGTAAAATGACAGAATTAAAACGCAT 59.456 33.333 0.00 0.00 0.00 4.73
1233 1259 6.809689 GGGGGTAAAATGACAGAATTAAAACG 59.190 38.462 0.00 0.00 0.00 3.60
1334 1369 0.689080 GGGTGGATCCTGAGCAGAGA 60.689 60.000 14.23 0.00 36.25 3.10
1356 1391 8.432805 TCTTCTTTTGTTAATCTCTTCTGGACT 58.567 33.333 0.00 0.00 0.00 3.85
1394 1429 8.990163 TTACTTTTCAACAAATTCCTCTACCT 57.010 30.769 0.00 0.00 0.00 3.08
1430 1465 3.702045 AGAGTTAGAAATGCTAGCGAGGT 59.298 43.478 10.77 0.00 35.66 3.85
1570 1608 7.281100 GCTAGCACTTGGTTTTCATCTAGTAAT 59.719 37.037 10.63 0.00 0.00 1.89
1638 1677 5.521010 TCGTCGTTTCTTTGTGTACAGAAAT 59.479 36.000 17.52 0.00 40.33 2.17
1664 1703 1.202806 CCTGCACCAACTCTTCAGGAA 60.203 52.381 0.53 0.00 45.31 3.36
1670 1709 4.524328 CCTAAATTTCCTGCACCAACTCTT 59.476 41.667 0.00 0.00 0.00 2.85
1752 1791 5.888161 AGCTAAAGGAATTGTTGTATCCAGG 59.112 40.000 0.00 0.00 35.62 4.45
1781 1820 4.827789 ACAGGGTGGATATATACAGTGGT 58.172 43.478 0.00 0.00 0.00 4.16
1900 1942 2.443416 ACGACAGTCAGTATACAGCCA 58.557 47.619 5.50 0.00 0.00 4.75
2001 2044 6.259638 CAAGGTTTAAAGACGCAAACAAGTA 58.740 36.000 0.00 0.00 36.56 2.24
2053 2096 4.941263 TGATGCCCTGTAACTGTATTGAAC 59.059 41.667 0.00 0.00 0.00 3.18
2196 2239 3.181440 TGGTTGAGTTGAAAGAGGCATCT 60.181 43.478 0.00 0.00 37.39 2.90
2225 2268 3.003173 CCTCGAAGCTGGTCCCCA 61.003 66.667 0.00 0.00 0.00 4.96
2226 2269 3.787001 CCCTCGAAGCTGGTCCCC 61.787 72.222 0.00 0.00 0.00 4.81
2227 2270 4.475135 GCCCTCGAAGCTGGTCCC 62.475 72.222 0.00 0.00 0.00 4.46
2277 2320 2.653366 TGGACAGAGGGTTAGAGTAGGT 59.347 50.000 0.00 0.00 0.00 3.08
2289 2332 3.424703 ACATGGACAAAATGGACAGAGG 58.575 45.455 0.00 0.00 0.00 3.69
2305 2348 7.601886 TCAAAATGGCAATAACTAACAACATGG 59.398 33.333 0.00 0.00 0.00 3.66
2397 2468 8.492673 TGATTTTAGTATGCACAGAGGTTAAG 57.507 34.615 0.00 0.00 0.00 1.85
2402 2473 8.668510 ACTTATGATTTTAGTATGCACAGAGG 57.331 34.615 0.00 0.00 0.00 3.69
2504 2575 2.349590 GTTTGGGCATTTGCATTCCTC 58.650 47.619 4.74 0.00 44.36 3.71
2860 2938 6.874288 ACTGTGTAATACTATCTCCGTACC 57.126 41.667 0.00 0.00 0.00 3.34
2997 3077 2.225467 GCTGCTTGAACCTTTCTCACT 58.775 47.619 0.00 0.00 0.00 3.41
3050 3130 0.373370 CGAAATCGAATCGCAGCCAA 59.627 50.000 10.46 0.00 43.02 4.52
3056 3136 1.577578 GTTTTGCCGAAATCGAATCGC 59.422 47.619 16.02 12.47 43.02 4.58
3057 3137 2.840176 CAGTTTTGCCGAAATCGAATCG 59.160 45.455 14.86 14.86 43.02 3.34
3156 4095 6.915843 GCTAAAACTTTGTTTCATCCGAGAAA 59.084 34.615 0.00 0.00 35.28 2.52
3246 4189 0.318441 TGCGACTATATCCAGCTGGC 59.682 55.000 28.91 13.15 34.44 4.85
3263 4206 3.563808 TCGGGTGAAGCACAATTATATGC 59.436 43.478 0.00 1.25 42.39 3.14
3288 4231 2.546789 CACAAACGAGTCCTTAACACCC 59.453 50.000 0.00 0.00 0.00 4.61
3314 4257 7.170320 GGCATAAGCAATGGATGTAAAGATTTG 59.830 37.037 0.00 0.00 44.61 2.32
3322 4265 3.489355 CCAGGCATAAGCAATGGATGTA 58.511 45.455 7.46 0.00 46.50 2.29
3641 4584 7.538303 TGATGAAAACTCAAAAAGAAAAGCC 57.462 32.000 0.00 0.00 0.00 4.35
3747 4690 7.553881 TTAGCCTGCAAAAGTAGATGATTAC 57.446 36.000 0.00 0.00 0.00 1.89
3920 4863 3.571590 TGAGGTTTTGTGCCTTAACCAT 58.428 40.909 0.00 0.00 42.96 3.55
4007 4950 5.994250 TGCAGAGTCAAAATTAGCTATCCT 58.006 37.500 0.00 0.00 0.00 3.24
4070 5013 7.559533 TGCAGTTTAAGAATAATGCAGGGATTA 59.440 33.333 0.00 0.00 38.64 1.75
4110 5053 8.597227 CATTTGCCACAGATAAACACATATTTG 58.403 33.333 0.00 0.00 0.00 2.32
4129 5072 4.525411 ACGTTACGCTTATACATTTGCC 57.475 40.909 4.09 0.00 0.00 4.52
4133 5076 6.583806 GGCTATGTACGTTACGCTTATACATT 59.416 38.462 18.73 8.00 37.57 2.71
4142 5085 1.336125 AGAGGGCTATGTACGTTACGC 59.664 52.381 4.09 0.00 0.00 4.42
4143 5086 2.031333 GGAGAGGGCTATGTACGTTACG 60.031 54.545 2.19 2.19 0.00 3.18
4144 5087 2.954318 TGGAGAGGGCTATGTACGTTAC 59.046 50.000 0.00 0.00 0.00 2.50
4147 5090 2.240279 GATGGAGAGGGCTATGTACGT 58.760 52.381 0.00 0.00 0.00 3.57
4149 5092 4.040952 ACAATGATGGAGAGGGCTATGTAC 59.959 45.833 0.00 0.00 0.00 2.90
4157 5100 5.887598 TGTGAATTAACAATGATGGAGAGGG 59.112 40.000 0.00 0.00 0.00 4.30
4199 5142 8.313292 AGCAACCAAAATAACATCACATACAAT 58.687 29.630 0.00 0.00 0.00 2.71
4203 5146 7.767261 GGTAGCAACCAAAATAACATCACATA 58.233 34.615 0.00 0.00 45.98 2.29
4242 5185 5.717119 CATTATGGAGCAAGAAAAGCTGTT 58.283 37.500 0.00 0.00 43.58 3.16
4296 5239 2.772924 CCCCACAGATTTGCCCCT 59.227 61.111 0.00 0.00 0.00 4.79
4671 5615 2.205022 TGAAGCCATTCTGAACCCAG 57.795 50.000 0.00 0.00 41.74 4.45
4730 5674 8.495949 GCACACTAAAATGCGTCTATATACATT 58.504 33.333 0.00 0.00 34.30 2.71
4913 5857 9.841295 TGAACCAAGTTTATATAATCCCTACAC 57.159 33.333 0.00 0.00 0.00 2.90
4949 5896 9.927081 ATTCTTTTACTGGTCTTTATCCATGAT 57.073 29.630 0.00 0.00 34.26 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.