Multiple sequence alignment - TraesCS2D01G370800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G370800 chr2D 100.000 3272 0 0 1 3272 474900751 474897480 0.000000e+00 6043.0
1 TraesCS2D01G370800 chr2B 89.736 1588 94 28 1690 3247 555854647 555853099 0.000000e+00 1965.0
2 TraesCS2D01G370800 chr2B 92.174 575 28 11 996 1560 555855279 555854712 0.000000e+00 797.0
3 TraesCS2D01G370800 chr2B 89.119 193 16 5 590 777 6530339 6530147 5.460000e-58 235.0
4 TraesCS2D01G370800 chr2B 85.135 222 17 10 372 584 555855722 555855508 2.560000e-51 213.0
5 TraesCS2D01G370800 chr2B 87.654 162 12 4 842 1001 555855466 555855311 7.210000e-42 182.0
6 TraesCS2D01G370800 chr2A 91.162 1437 75 32 996 2411 617442443 617441038 0.000000e+00 1903.0
7 TraesCS2D01G370800 chr2A 95.652 253 11 0 2526 2778 617440594 617440342 1.090000e-109 407.0
8 TraesCS2D01G370800 chr2A 93.820 178 6 2 829 1001 617442660 617442483 2.500000e-66 263.0
9 TraesCS2D01G370800 chr2A 88.947 190 17 4 590 777 68865394 68865581 7.060000e-57 231.0
10 TraesCS2D01G370800 chr2A 82.456 114 13 5 399 512 617455615 617455509 3.480000e-15 93.5
11 TraesCS2D01G370800 chr7B 81.378 392 46 14 1 386 623810582 623810952 8.880000e-76 294.0
12 TraesCS2D01G370800 chr5D 88.889 198 17 5 586 780 288133470 288133275 4.220000e-59 239.0
13 TraesCS2D01G370800 chr1D 89.474 190 15 4 590 776 191375257 191375444 5.460000e-58 235.0
14 TraesCS2D01G370800 chr6A 88.718 195 17 5 588 777 592186974 592186780 1.960000e-57 233.0
15 TraesCS2D01G370800 chr6A 87.379 206 18 8 590 791 593696924 593697125 2.540000e-56 230.0
16 TraesCS2D01G370800 chr3D 89.362 188 17 3 592 777 610880489 610880675 1.960000e-57 233.0
17 TraesCS2D01G370800 chr3D 79.137 139 27 2 2023 2160 134832171 134832308 9.670000e-16 95.3
18 TraesCS2D01G370800 chr4A 89.362 188 14 6 590 776 104614263 104614445 7.060000e-57 231.0
19 TraesCS2D01G370800 chr4A 80.153 262 47 4 1923 2183 683617299 683617042 1.200000e-44 191.0
20 TraesCS2D01G370800 chr1A 88.601 193 19 3 590 780 580149012 580149203 7.060000e-57 231.0
21 TraesCS2D01G370800 chr4B 81.298 262 44 4 1923 2183 601099235 601098978 1.190000e-49 207.0
22 TraesCS2D01G370800 chr4D 80.534 262 46 4 1923 2183 476875607 476875350 2.580000e-46 196.0
23 TraesCS2D01G370800 chr4D 75.000 144 34 2 2026 2168 499618511 499618369 7.580000e-07 65.8
24 TraesCS2D01G370800 chr3A 79.856 139 26 2 2023 2160 149565681 149565818 2.080000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G370800 chr2D 474897480 474900751 3271 True 6043.000000 6043 100.000000 1 3272 1 chr2D.!!$R1 3271
1 TraesCS2D01G370800 chr2B 555853099 555855722 2623 True 789.250000 1965 88.674750 372 3247 4 chr2B.!!$R2 2875
2 TraesCS2D01G370800 chr2A 617440342 617442660 2318 True 857.666667 1903 93.544667 829 2778 3 chr2A.!!$R2 1949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.035820 TCCAGCTTCGCGGGTTTATT 60.036 50.0 6.13 0.0 44.00 1.40 F
280 281 0.039165 GCCTGTTGGTTGCAGTAAGC 60.039 55.0 0.00 0.0 38.72 3.09 F
1802 1913 0.100682 GTCGGCGAGAGTTATCTGCA 59.899 55.0 11.20 0.0 35.30 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 1894 0.100682 TGCAGATAACTCTCGCCGAC 59.899 55.0 0.00 0.0 0.00 4.79 R
1851 1962 0.520404 GCTGCAGGACAAGACACATG 59.480 55.0 17.12 0.0 0.00 3.21 R
2902 3391 0.036952 CACACGACCAGCTTCCTGAT 60.037 55.0 0.00 0.0 41.77 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.753497 GAGATTAGTACCAATTTGGAAGGATT 57.247 34.615 22.19 0.84 40.96 3.01
26 27 8.525290 AGATTAGTACCAATTTGGAAGGATTG 57.475 34.615 22.19 0.00 40.96 2.67
27 28 8.116026 AGATTAGTACCAATTTGGAAGGATTGT 58.884 33.333 22.19 0.00 40.96 2.71
28 29 7.696992 TTAGTACCAATTTGGAAGGATTGTC 57.303 36.000 22.19 2.08 40.96 3.18
29 30 5.016831 AGTACCAATTTGGAAGGATTGTCC 58.983 41.667 22.19 0.00 40.96 4.02
30 31 4.132122 ACCAATTTGGAAGGATTGTCCT 57.868 40.909 22.19 0.00 45.10 3.85
39 40 2.431954 AGGATTGTCCTTGAGCATGG 57.568 50.000 0.00 0.00 46.91 3.66
40 41 1.918262 AGGATTGTCCTTGAGCATGGA 59.082 47.619 0.00 1.33 46.91 3.41
41 42 2.092538 AGGATTGTCCTTGAGCATGGAG 60.093 50.000 5.44 0.00 46.91 3.86
42 43 1.674962 GATTGTCCTTGAGCATGGAGC 59.325 52.381 5.44 2.86 46.19 4.70
53 54 1.632422 GCATGGAGCGTTTTGATTGG 58.368 50.000 0.00 0.00 0.00 3.16
54 55 1.632422 CATGGAGCGTTTTGATTGGC 58.368 50.000 0.00 0.00 0.00 4.52
55 56 1.203052 CATGGAGCGTTTTGATTGGCT 59.797 47.619 0.00 0.00 38.70 4.75
56 57 1.327303 TGGAGCGTTTTGATTGGCTT 58.673 45.000 0.00 0.00 35.54 4.35
57 58 2.509569 TGGAGCGTTTTGATTGGCTTA 58.490 42.857 0.00 0.00 35.54 3.09
58 59 3.088532 TGGAGCGTTTTGATTGGCTTAT 58.911 40.909 0.00 0.00 35.54 1.73
59 60 3.128589 TGGAGCGTTTTGATTGGCTTATC 59.871 43.478 0.00 0.00 35.54 1.75
60 61 3.128589 GGAGCGTTTTGATTGGCTTATCA 59.871 43.478 0.00 0.00 35.54 2.15
61 62 4.202050 GGAGCGTTTTGATTGGCTTATCAT 60.202 41.667 4.19 0.00 35.54 2.45
62 63 5.008613 GGAGCGTTTTGATTGGCTTATCATA 59.991 40.000 4.19 0.00 35.54 2.15
63 64 6.449635 AGCGTTTTGATTGGCTTATCATAA 57.550 33.333 4.19 3.76 34.67 1.90
64 65 7.042797 AGCGTTTTGATTGGCTTATCATAAT 57.957 32.000 4.19 0.00 34.67 1.28
65 66 7.141363 AGCGTTTTGATTGGCTTATCATAATC 58.859 34.615 4.19 0.00 34.67 1.75
66 67 6.363357 GCGTTTTGATTGGCTTATCATAATCC 59.637 38.462 4.19 0.00 34.67 3.01
67 68 7.424803 CGTTTTGATTGGCTTATCATAATCCA 58.575 34.615 0.00 0.00 34.67 3.41
68 69 7.379529 CGTTTTGATTGGCTTATCATAATCCAC 59.620 37.037 0.00 0.00 34.67 4.02
69 70 8.416329 GTTTTGATTGGCTTATCATAATCCACT 58.584 33.333 0.00 0.00 34.67 4.00
70 71 7.750229 TTGATTGGCTTATCATAATCCACTC 57.250 36.000 9.63 9.63 34.67 3.51
71 72 7.083062 TGATTGGCTTATCATAATCCACTCT 57.917 36.000 15.12 0.00 30.66 3.24
72 73 6.938596 TGATTGGCTTATCATAATCCACTCTG 59.061 38.462 15.12 0.00 30.66 3.35
73 74 6.499106 TTGGCTTATCATAATCCACTCTGA 57.501 37.500 0.00 0.00 0.00 3.27
74 75 6.499106 TGGCTTATCATAATCCACTCTGAA 57.501 37.500 0.00 0.00 0.00 3.02
75 76 7.083062 TGGCTTATCATAATCCACTCTGAAT 57.917 36.000 0.00 0.00 0.00 2.57
76 77 7.164122 TGGCTTATCATAATCCACTCTGAATC 58.836 38.462 0.00 0.00 0.00 2.52
77 78 7.016957 TGGCTTATCATAATCCACTCTGAATCT 59.983 37.037 0.00 0.00 0.00 2.40
78 79 7.548780 GGCTTATCATAATCCACTCTGAATCTC 59.451 40.741 0.00 0.00 0.00 2.75
79 80 7.548780 GCTTATCATAATCCACTCTGAATCTCC 59.451 40.741 0.00 0.00 0.00 3.71
80 81 5.459536 TCATAATCCACTCTGAATCTCCG 57.540 43.478 0.00 0.00 0.00 4.63
81 82 4.895889 TCATAATCCACTCTGAATCTCCGT 59.104 41.667 0.00 0.00 0.00 4.69
82 83 3.810310 AATCCACTCTGAATCTCCGTC 57.190 47.619 0.00 0.00 0.00 4.79
83 84 1.095600 TCCACTCTGAATCTCCGTCG 58.904 55.000 0.00 0.00 0.00 5.12
84 85 0.526524 CCACTCTGAATCTCCGTCGC 60.527 60.000 0.00 0.00 0.00 5.19
85 86 0.453793 CACTCTGAATCTCCGTCGCT 59.546 55.000 0.00 0.00 0.00 4.93
86 87 1.671328 CACTCTGAATCTCCGTCGCTA 59.329 52.381 0.00 0.00 0.00 4.26
87 88 2.292016 CACTCTGAATCTCCGTCGCTAT 59.708 50.000 0.00 0.00 0.00 2.97
88 89 2.550606 ACTCTGAATCTCCGTCGCTATC 59.449 50.000 0.00 0.00 0.00 2.08
89 90 1.531578 TCTGAATCTCCGTCGCTATCG 59.468 52.381 0.00 0.00 0.00 2.92
90 91 0.040336 TGAATCTCCGTCGCTATCGC 60.040 55.000 0.00 0.00 35.26 4.58
91 92 0.238817 GAATCTCCGTCGCTATCGCT 59.761 55.000 0.00 0.00 35.26 4.93
92 93 0.039978 AATCTCCGTCGCTATCGCTG 60.040 55.000 0.00 0.00 35.26 5.18
93 94 2.465097 ATCTCCGTCGCTATCGCTGC 62.465 60.000 0.00 0.00 35.26 5.25
94 95 3.187699 CTCCGTCGCTATCGCTGCT 62.188 63.158 0.00 0.00 35.26 4.24
95 96 2.727647 CCGTCGCTATCGCTGCTC 60.728 66.667 0.00 0.00 35.26 4.26
96 97 2.329690 CGTCGCTATCGCTGCTCT 59.670 61.111 0.00 0.00 35.26 4.09
97 98 1.569984 CGTCGCTATCGCTGCTCTA 59.430 57.895 0.00 0.00 35.26 2.43
98 99 0.041224 CGTCGCTATCGCTGCTCTAA 60.041 55.000 0.00 0.00 35.26 2.10
99 100 1.400550 GTCGCTATCGCTGCTCTAAC 58.599 55.000 0.00 0.00 35.26 2.34
100 101 0.041224 TCGCTATCGCTGCTCTAACG 60.041 55.000 0.00 0.00 35.26 3.18
101 102 0.041224 CGCTATCGCTGCTCTAACGA 60.041 55.000 0.00 0.00 40.53 3.85
102 103 1.680668 GCTATCGCTGCTCTAACGAG 58.319 55.000 0.00 0.00 39.48 4.18
103 104 1.002251 GCTATCGCTGCTCTAACGAGT 60.002 52.381 0.00 0.00 39.48 4.18
104 105 2.645163 CTATCGCTGCTCTAACGAGTG 58.355 52.381 0.00 0.00 39.48 3.51
105 106 1.095600 ATCGCTGCTCTAACGAGTGA 58.904 50.000 0.00 0.00 39.48 3.41
106 107 1.095600 TCGCTGCTCTAACGAGTGAT 58.904 50.000 0.00 0.00 39.53 3.06
107 108 1.472878 TCGCTGCTCTAACGAGTGATT 59.527 47.619 0.00 0.00 39.53 2.57
108 109 1.849219 CGCTGCTCTAACGAGTGATTC 59.151 52.381 0.00 0.00 39.53 2.52
109 110 2.732282 CGCTGCTCTAACGAGTGATTCA 60.732 50.000 0.00 0.00 39.53 2.57
110 111 2.600867 GCTGCTCTAACGAGTGATTCAC 59.399 50.000 8.82 8.82 39.53 3.18
112 113 4.489810 CTGCTCTAACGAGTGATTCACTT 58.510 43.478 19.88 7.64 45.44 3.16
113 114 5.638596 TGCTCTAACGAGTGATTCACTTA 57.361 39.130 19.88 8.37 45.44 2.24
114 115 6.020971 TGCTCTAACGAGTGATTCACTTAA 57.979 37.500 19.88 6.08 45.44 1.85
115 116 6.631016 TGCTCTAACGAGTGATTCACTTAAT 58.369 36.000 19.88 11.40 45.44 1.40
116 117 7.768240 TGCTCTAACGAGTGATTCACTTAATA 58.232 34.615 19.88 11.86 45.44 0.98
117 118 7.915923 TGCTCTAACGAGTGATTCACTTAATAG 59.084 37.037 19.88 18.88 45.44 1.73
118 119 7.096394 GCTCTAACGAGTGATTCACTTAATAGC 60.096 40.741 19.88 17.91 45.44 2.97
119 120 7.997482 TCTAACGAGTGATTCACTTAATAGCT 58.003 34.615 19.88 0.00 45.44 3.32
120 121 8.129840 TCTAACGAGTGATTCACTTAATAGCTC 58.870 37.037 19.88 4.81 45.44 4.09
121 122 6.458232 ACGAGTGATTCACTTAATAGCTCT 57.542 37.500 19.88 0.00 45.44 4.09
122 123 6.269315 ACGAGTGATTCACTTAATAGCTCTG 58.731 40.000 19.88 5.21 45.44 3.35
123 124 5.174761 CGAGTGATTCACTTAATAGCTCTGC 59.825 44.000 19.88 2.75 45.44 4.26
124 125 6.232581 AGTGATTCACTTAATAGCTCTGCT 57.767 37.500 13.61 0.00 42.59 4.24
125 126 6.648192 AGTGATTCACTTAATAGCTCTGCTT 58.352 36.000 13.61 0.00 42.59 3.91
126 127 7.786030 AGTGATTCACTTAATAGCTCTGCTTA 58.214 34.615 13.61 0.00 42.59 3.09
127 128 8.428063 AGTGATTCACTTAATAGCTCTGCTTAT 58.572 33.333 13.61 0.00 42.59 1.73
128 129 8.494347 GTGATTCACTTAATAGCTCTGCTTATG 58.506 37.037 9.59 0.00 40.44 1.90
129 130 7.658982 TGATTCACTTAATAGCTCTGCTTATGG 59.341 37.037 0.00 0.00 40.44 2.74
130 131 6.731292 TCACTTAATAGCTCTGCTTATGGA 57.269 37.500 0.00 0.00 40.44 3.41
131 132 6.516718 TCACTTAATAGCTCTGCTTATGGAC 58.483 40.000 0.00 0.00 40.44 4.02
132 133 6.098266 TCACTTAATAGCTCTGCTTATGGACA 59.902 38.462 0.00 0.00 40.44 4.02
133 134 6.201806 CACTTAATAGCTCTGCTTATGGACAC 59.798 42.308 0.00 0.00 40.44 3.67
134 135 6.098982 ACTTAATAGCTCTGCTTATGGACACT 59.901 38.462 0.00 0.00 40.44 3.55
135 136 5.365021 AATAGCTCTGCTTATGGACACTT 57.635 39.130 0.00 0.00 40.44 3.16
136 137 2.983229 AGCTCTGCTTATGGACACTTG 58.017 47.619 0.00 0.00 33.89 3.16
137 138 2.568956 AGCTCTGCTTATGGACACTTGA 59.431 45.455 0.00 0.00 33.89 3.02
138 139 3.199508 AGCTCTGCTTATGGACACTTGAT 59.800 43.478 0.00 0.00 33.89 2.57
139 140 3.311871 GCTCTGCTTATGGACACTTGATG 59.688 47.826 0.00 0.00 0.00 3.07
140 141 4.763073 CTCTGCTTATGGACACTTGATGA 58.237 43.478 0.00 0.00 0.00 2.92
141 142 4.763073 TCTGCTTATGGACACTTGATGAG 58.237 43.478 0.00 0.00 0.00 2.90
142 143 4.467438 TCTGCTTATGGACACTTGATGAGA 59.533 41.667 0.00 0.00 0.00 3.27
143 144 4.763073 TGCTTATGGACACTTGATGAGAG 58.237 43.478 0.00 0.00 0.00 3.20
144 145 4.467438 TGCTTATGGACACTTGATGAGAGA 59.533 41.667 0.00 0.00 0.00 3.10
145 146 5.049167 GCTTATGGACACTTGATGAGAGAG 58.951 45.833 0.00 0.00 0.00 3.20
146 147 5.163468 GCTTATGGACACTTGATGAGAGAGA 60.163 44.000 0.00 0.00 0.00 3.10
147 148 6.462552 TTATGGACACTTGATGAGAGAGAG 57.537 41.667 0.00 0.00 0.00 3.20
148 149 4.039603 TGGACACTTGATGAGAGAGAGA 57.960 45.455 0.00 0.00 0.00 3.10
149 150 4.015764 TGGACACTTGATGAGAGAGAGAG 58.984 47.826 0.00 0.00 0.00 3.20
150 151 4.263683 TGGACACTTGATGAGAGAGAGAGA 60.264 45.833 0.00 0.00 0.00 3.10
151 152 4.336433 GGACACTTGATGAGAGAGAGAGAG 59.664 50.000 0.00 0.00 0.00 3.20
152 153 5.178096 ACACTTGATGAGAGAGAGAGAGA 57.822 43.478 0.00 0.00 0.00 3.10
153 154 5.188434 ACACTTGATGAGAGAGAGAGAGAG 58.812 45.833 0.00 0.00 0.00 3.20
154 155 5.045651 ACACTTGATGAGAGAGAGAGAGAGA 60.046 44.000 0.00 0.00 0.00 3.10
155 156 6.060136 CACTTGATGAGAGAGAGAGAGAGAT 58.940 44.000 0.00 0.00 0.00 2.75
156 157 6.544931 CACTTGATGAGAGAGAGAGAGAGATT 59.455 42.308 0.00 0.00 0.00 2.40
157 158 7.716560 CACTTGATGAGAGAGAGAGAGAGATTA 59.283 40.741 0.00 0.00 0.00 1.75
158 159 8.274322 ACTTGATGAGAGAGAGAGAGAGATTAA 58.726 37.037 0.00 0.00 0.00 1.40
159 160 8.681486 TTGATGAGAGAGAGAGAGAGATTAAG 57.319 38.462 0.00 0.00 0.00 1.85
160 161 8.033178 TGATGAGAGAGAGAGAGAGATTAAGA 57.967 38.462 0.00 0.00 0.00 2.10
161 162 8.493607 TGATGAGAGAGAGAGAGAGATTAAGAA 58.506 37.037 0.00 0.00 0.00 2.52
162 163 8.915057 ATGAGAGAGAGAGAGAGATTAAGAAG 57.085 38.462 0.00 0.00 0.00 2.85
163 164 6.767902 TGAGAGAGAGAGAGAGATTAAGAAGC 59.232 42.308 0.00 0.00 0.00 3.86
164 165 6.904626 AGAGAGAGAGAGAGATTAAGAAGCT 58.095 40.000 0.00 0.00 0.00 3.74
165 166 7.349598 AGAGAGAGAGAGAGATTAAGAAGCTT 58.650 38.462 0.00 0.00 0.00 3.74
166 167 7.500559 AGAGAGAGAGAGAGATTAAGAAGCTTC 59.499 40.741 19.11 19.11 0.00 3.86
167 168 7.349598 AGAGAGAGAGAGATTAAGAAGCTTCT 58.650 38.462 23.49 23.49 39.74 2.85
168 169 7.500559 AGAGAGAGAGAGATTAAGAAGCTTCTC 59.499 40.741 28.58 16.37 36.28 2.87
169 170 6.547510 AGAGAGAGAGATTAAGAAGCTTCTCC 59.452 42.308 28.58 17.20 36.28 3.71
170 171 6.194235 AGAGAGAGATTAAGAAGCTTCTCCA 58.806 40.000 28.58 18.23 36.28 3.86
171 172 6.322201 AGAGAGAGATTAAGAAGCTTCTCCAG 59.678 42.308 28.58 0.00 36.28 3.86
179 180 3.191539 GCTTCTCCAGCTTCGCGG 61.192 66.667 6.13 0.00 46.27 6.46
180 181 2.510238 CTTCTCCAGCTTCGCGGG 60.510 66.667 6.13 0.00 44.93 6.13
181 182 3.302347 CTTCTCCAGCTTCGCGGGT 62.302 63.158 6.13 0.00 44.00 5.28
182 183 2.788191 CTTCTCCAGCTTCGCGGGTT 62.788 60.000 6.13 0.00 44.00 4.11
183 184 2.358737 CTCCAGCTTCGCGGGTTT 60.359 61.111 6.13 0.00 44.00 3.27
184 185 1.079405 CTCCAGCTTCGCGGGTTTA 60.079 57.895 6.13 0.00 44.00 2.01
185 186 0.462047 CTCCAGCTTCGCGGGTTTAT 60.462 55.000 6.13 0.00 44.00 1.40
186 187 0.035820 TCCAGCTTCGCGGGTTTATT 60.036 50.000 6.13 0.00 44.00 1.40
187 188 0.377203 CCAGCTTCGCGGGTTTATTC 59.623 55.000 6.13 0.00 39.00 1.75
188 189 0.377203 CAGCTTCGCGGGTTTATTCC 59.623 55.000 6.13 0.00 0.00 3.01
196 197 2.825086 CGGGTTTATTCCGCTGAAAG 57.175 50.000 0.00 0.00 41.07 2.62
197 198 2.081462 CGGGTTTATTCCGCTGAAAGT 58.919 47.619 0.00 0.00 41.07 2.66
198 199 2.486592 CGGGTTTATTCCGCTGAAAGTT 59.513 45.455 0.00 0.00 41.07 2.66
199 200 3.685756 CGGGTTTATTCCGCTGAAAGTTA 59.314 43.478 0.00 0.00 41.07 2.24
200 201 4.334481 CGGGTTTATTCCGCTGAAAGTTAT 59.666 41.667 0.00 0.00 41.07 1.89
201 202 5.163693 CGGGTTTATTCCGCTGAAAGTTATT 60.164 40.000 0.00 0.00 41.07 1.40
202 203 6.263344 GGGTTTATTCCGCTGAAAGTTATTC 58.737 40.000 0.00 0.00 35.30 1.75
203 204 6.127842 GGGTTTATTCCGCTGAAAGTTATTCA 60.128 38.462 0.00 0.00 35.30 2.57
204 205 7.416326 GGGTTTATTCCGCTGAAAGTTATTCAT 60.416 37.037 0.00 0.00 35.30 2.57
205 206 8.617809 GGTTTATTCCGCTGAAAGTTATTCATA 58.382 33.333 0.00 0.00 35.30 2.15
206 207 9.997482 GTTTATTCCGCTGAAAGTTATTCATAA 57.003 29.630 0.00 0.00 35.30 1.90
209 210 7.857734 TTCCGCTGAAAGTTATTCATAATCA 57.142 32.000 0.00 0.00 35.30 2.57
210 211 7.857734 TCCGCTGAAAGTTATTCATAATCAA 57.142 32.000 0.00 0.00 35.30 2.57
211 212 8.275015 TCCGCTGAAAGTTATTCATAATCAAA 57.725 30.769 0.00 0.00 35.30 2.69
212 213 8.735315 TCCGCTGAAAGTTATTCATAATCAAAA 58.265 29.630 0.00 0.00 35.30 2.44
213 214 9.520204 CCGCTGAAAGTTATTCATAATCAAAAT 57.480 29.630 0.00 0.00 35.30 1.82
227 228 9.905713 TCATAATCAAAATAGGTTGCTCTTACT 57.094 29.630 0.00 0.00 0.00 2.24
230 231 8.870075 AATCAAAATAGGTTGCTCTTACTCTT 57.130 30.769 0.00 0.00 0.00 2.85
231 232 9.959721 AATCAAAATAGGTTGCTCTTACTCTTA 57.040 29.630 0.00 0.00 0.00 2.10
232 233 8.773404 TCAAAATAGGTTGCTCTTACTCTTAC 57.227 34.615 0.00 0.00 0.00 2.34
233 234 8.594550 TCAAAATAGGTTGCTCTTACTCTTACT 58.405 33.333 0.00 0.00 0.00 2.24
234 235 9.871238 CAAAATAGGTTGCTCTTACTCTTACTA 57.129 33.333 0.00 0.00 0.00 1.82
238 239 7.964666 AGGTTGCTCTTACTCTTACTAATCT 57.035 36.000 0.00 0.00 0.00 2.40
240 241 9.476928 AGGTTGCTCTTACTCTTACTAATCTAA 57.523 33.333 0.00 0.00 0.00 2.10
241 242 9.738832 GGTTGCTCTTACTCTTACTAATCTAAG 57.261 37.037 0.00 0.00 0.00 2.18
242 243 9.738832 GTTGCTCTTACTCTTACTAATCTAAGG 57.261 37.037 0.00 0.00 0.00 2.69
243 244 9.696572 TTGCTCTTACTCTTACTAATCTAAGGA 57.303 33.333 0.00 0.00 0.00 3.36
244 245 9.344772 TGCTCTTACTCTTACTAATCTAAGGAG 57.655 37.037 0.00 0.00 0.00 3.69
245 246 9.563748 GCTCTTACTCTTACTAATCTAAGGAGA 57.436 37.037 0.00 0.00 35.71 3.71
257 258 5.715434 ATCTAAGGAGATTTCGAGGTAGC 57.285 43.478 0.00 0.00 39.56 3.58
258 259 4.533815 TCTAAGGAGATTTCGAGGTAGCA 58.466 43.478 0.00 0.00 0.00 3.49
259 260 3.528597 AAGGAGATTTCGAGGTAGCAC 57.471 47.619 0.00 0.00 0.00 4.40
260 261 1.757699 AGGAGATTTCGAGGTAGCACC 59.242 52.381 0.00 0.00 38.99 5.01
261 262 1.536284 GGAGATTTCGAGGTAGCACCG 60.536 57.143 0.00 0.00 44.90 4.94
262 263 0.179108 AGATTTCGAGGTAGCACCGC 60.179 55.000 0.00 0.00 44.90 5.68
263 264 1.152383 GATTTCGAGGTAGCACCGCC 61.152 60.000 0.00 0.00 44.90 6.13
264 265 1.614241 ATTTCGAGGTAGCACCGCCT 61.614 55.000 0.00 0.00 44.90 5.52
265 266 2.501223 TTTCGAGGTAGCACCGCCTG 62.501 60.000 0.00 0.00 44.90 4.85
266 267 3.760035 CGAGGTAGCACCGCCTGT 61.760 66.667 0.00 0.00 44.90 4.00
267 268 2.663196 GAGGTAGCACCGCCTGTT 59.337 61.111 0.00 0.00 44.90 3.16
268 269 1.741770 GAGGTAGCACCGCCTGTTG 60.742 63.158 0.00 0.00 44.90 3.33
269 270 2.746277 GGTAGCACCGCCTGTTGG 60.746 66.667 0.00 0.00 0.00 3.77
270 271 2.032071 GTAGCACCGCCTGTTGGT 59.968 61.111 0.00 0.00 41.47 3.67
271 272 1.599797 GTAGCACCGCCTGTTGGTT 60.600 57.895 0.00 0.00 37.72 3.67
272 273 1.599518 TAGCACCGCCTGTTGGTTG 60.600 57.895 0.00 0.00 37.72 3.77
273 274 4.645921 GCACCGCCTGTTGGTTGC 62.646 66.667 0.00 0.00 37.72 4.17
274 275 3.215568 CACCGCCTGTTGGTTGCA 61.216 61.111 0.00 0.00 37.72 4.08
275 276 2.906897 ACCGCCTGTTGGTTGCAG 60.907 61.111 0.00 0.00 35.82 4.41
276 277 2.906897 CCGCCTGTTGGTTGCAGT 60.907 61.111 0.00 0.00 35.27 4.40
277 278 1.599518 CCGCCTGTTGGTTGCAGTA 60.600 57.895 0.00 0.00 35.27 2.74
278 279 1.169661 CCGCCTGTTGGTTGCAGTAA 61.170 55.000 0.00 0.00 35.27 2.24
279 280 0.238289 CGCCTGTTGGTTGCAGTAAG 59.762 55.000 0.00 0.00 35.27 2.34
280 281 0.039165 GCCTGTTGGTTGCAGTAAGC 60.039 55.000 0.00 0.00 38.72 3.09
281 282 1.609208 CCTGTTGGTTGCAGTAAGCT 58.391 50.000 1.98 0.00 45.94 3.74
282 283 1.537202 CCTGTTGGTTGCAGTAAGCTC 59.463 52.381 1.98 0.00 45.94 4.09
283 284 2.498167 CTGTTGGTTGCAGTAAGCTCT 58.502 47.619 1.98 0.00 45.94 4.09
284 285 3.557054 CCTGTTGGTTGCAGTAAGCTCTA 60.557 47.826 1.98 0.00 45.94 2.43
285 286 3.664107 TGTTGGTTGCAGTAAGCTCTAG 58.336 45.455 1.98 0.00 45.94 2.43
286 287 3.323691 TGTTGGTTGCAGTAAGCTCTAGA 59.676 43.478 1.98 0.00 45.94 2.43
287 288 3.594603 TGGTTGCAGTAAGCTCTAGAC 57.405 47.619 1.98 0.00 45.94 2.59
288 289 3.165875 TGGTTGCAGTAAGCTCTAGACT 58.834 45.455 1.98 0.00 45.94 3.24
289 290 4.341487 TGGTTGCAGTAAGCTCTAGACTA 58.659 43.478 1.98 0.00 45.94 2.59
290 291 4.956700 TGGTTGCAGTAAGCTCTAGACTAT 59.043 41.667 1.98 0.00 45.94 2.12
291 292 5.163509 TGGTTGCAGTAAGCTCTAGACTATG 60.164 44.000 1.98 0.00 45.94 2.23
292 293 5.163499 GGTTGCAGTAAGCTCTAGACTATGT 60.163 44.000 0.00 0.00 45.94 2.29
293 294 5.506686 TGCAGTAAGCTCTAGACTATGTG 57.493 43.478 0.00 0.00 45.94 3.21
294 295 5.193679 TGCAGTAAGCTCTAGACTATGTGA 58.806 41.667 0.00 0.00 45.94 3.58
295 296 5.652452 TGCAGTAAGCTCTAGACTATGTGAA 59.348 40.000 0.00 0.00 45.94 3.18
296 297 6.152831 TGCAGTAAGCTCTAGACTATGTGAAA 59.847 38.462 0.00 0.00 45.94 2.69
297 298 7.036220 GCAGTAAGCTCTAGACTATGTGAAAA 58.964 38.462 0.00 0.00 41.15 2.29
298 299 7.221838 GCAGTAAGCTCTAGACTATGTGAAAAG 59.778 40.741 0.00 0.00 41.15 2.27
299 300 8.247562 CAGTAAGCTCTAGACTATGTGAAAAGT 58.752 37.037 0.00 0.00 0.00 2.66
300 301 8.808092 AGTAAGCTCTAGACTATGTGAAAAGTT 58.192 33.333 0.00 0.00 0.00 2.66
301 302 9.425577 GTAAGCTCTAGACTATGTGAAAAGTTT 57.574 33.333 0.00 0.00 0.00 2.66
302 303 8.910351 AAGCTCTAGACTATGTGAAAAGTTTT 57.090 30.769 0.00 0.00 0.00 2.43
303 304 9.998106 AAGCTCTAGACTATGTGAAAAGTTTTA 57.002 29.630 0.00 0.00 0.00 1.52
334 335 9.924650 ATCAGACTGTAAACTACTTCGTATTTT 57.075 29.630 1.59 0.00 0.00 1.82
335 336 9.754382 TCAGACTGTAAACTACTTCGTATTTTT 57.246 29.630 1.59 0.00 0.00 1.94
361 362 8.777578 AAGGAATAAAATACCCACTATTTCCC 57.222 34.615 0.00 0.00 34.45 3.97
362 363 7.002276 AGGAATAAAATACCCACTATTTCCCG 58.998 38.462 0.00 0.00 34.45 5.14
363 364 6.774170 GGAATAAAATACCCACTATTTCCCGT 59.226 38.462 0.00 0.00 34.45 5.28
364 365 7.040892 GGAATAAAATACCCACTATTTCCCGTC 60.041 40.741 0.00 0.00 34.45 4.79
365 366 4.847990 AAATACCCACTATTTCCCGTCA 57.152 40.909 0.00 0.00 30.30 4.35
366 367 4.847990 AATACCCACTATTTCCCGTCAA 57.152 40.909 0.00 0.00 0.00 3.18
367 368 4.847990 ATACCCACTATTTCCCGTCAAA 57.152 40.909 0.00 0.00 0.00 2.69
368 369 3.512219 ACCCACTATTTCCCGTCAAAA 57.488 42.857 0.00 0.00 0.00 2.44
369 370 3.834938 ACCCACTATTTCCCGTCAAAAA 58.165 40.909 0.00 0.00 0.00 1.94
370 371 4.412843 ACCCACTATTTCCCGTCAAAAAT 58.587 39.130 0.00 0.00 0.00 1.82
458 459 6.382869 CAACCCATTGTTTGGCAATAAAAA 57.617 33.333 0.00 0.00 45.33 1.94
481 482 2.747443 GGGCCCCAACCTCTAGCTC 61.747 68.421 12.23 0.00 0.00 4.09
527 528 4.273148 AGGAAACTGATCGTTGCTTACT 57.727 40.909 7.90 0.00 41.13 2.24
534 535 4.245660 CTGATCGTTGCTTACTGGAAAGA 58.754 43.478 0.00 0.00 38.57 2.52
535 536 4.245660 TGATCGTTGCTTACTGGAAAGAG 58.754 43.478 0.00 0.00 37.80 2.85
536 537 3.040147 TCGTTGCTTACTGGAAAGAGG 57.960 47.619 0.00 0.00 31.91 3.69
540 545 4.274950 CGTTGCTTACTGGAAAGAGGAAAA 59.725 41.667 0.00 0.00 0.00 2.29
559 564 2.869233 AAAAACACTGCATGCGTCTT 57.131 40.000 14.09 5.37 0.00 3.01
560 565 2.405892 AAAACACTGCATGCGTCTTC 57.594 45.000 14.09 0.00 0.00 2.87
561 566 1.308047 AAACACTGCATGCGTCTTCA 58.692 45.000 14.09 0.00 0.00 3.02
562 567 1.527034 AACACTGCATGCGTCTTCAT 58.473 45.000 14.09 0.00 0.00 2.57
563 568 2.385013 ACACTGCATGCGTCTTCATA 57.615 45.000 14.09 0.00 0.00 2.15
564 569 2.274437 ACACTGCATGCGTCTTCATAG 58.726 47.619 14.09 4.47 0.00 2.23
565 570 1.596260 CACTGCATGCGTCTTCATAGG 59.404 52.381 14.09 0.00 0.00 2.57
566 571 1.482182 ACTGCATGCGTCTTCATAGGA 59.518 47.619 14.09 0.00 0.00 2.94
567 572 2.133553 CTGCATGCGTCTTCATAGGAG 58.866 52.381 14.09 0.00 0.00 3.69
584 593 2.614013 GGGGGCTCCTCTTCCCAA 60.614 66.667 0.52 0.00 44.43 4.12
585 594 2.238701 GGGGGCTCCTCTTCCCAAA 61.239 63.158 0.52 0.00 44.43 3.28
589 598 0.881796 GGCTCCTCTTCCCAAAAACG 59.118 55.000 0.00 0.00 0.00 3.60
590 599 1.544759 GGCTCCTCTTCCCAAAAACGA 60.545 52.381 0.00 0.00 0.00 3.85
591 600 1.807142 GCTCCTCTTCCCAAAAACGAG 59.193 52.381 0.00 0.00 0.00 4.18
592 601 2.810767 GCTCCTCTTCCCAAAAACGAGT 60.811 50.000 0.00 0.00 0.00 4.18
595 604 5.237236 TCCTCTTCCCAAAAACGAGTAAT 57.763 39.130 0.00 0.00 0.00 1.89
596 605 5.001232 TCCTCTTCCCAAAAACGAGTAATG 58.999 41.667 0.00 0.00 0.00 1.90
597 606 4.379499 CCTCTTCCCAAAAACGAGTAATGC 60.379 45.833 0.00 0.00 0.00 3.56
599 608 5.553123 TCTTCCCAAAAACGAGTAATGCTA 58.447 37.500 0.00 0.00 0.00 3.49
600 609 5.410439 TCTTCCCAAAAACGAGTAATGCTAC 59.590 40.000 0.00 0.00 0.00 3.58
601 610 4.643463 TCCCAAAAACGAGTAATGCTACA 58.357 39.130 0.00 0.00 0.00 2.74
602 611 4.453136 TCCCAAAAACGAGTAATGCTACAC 59.547 41.667 0.00 0.00 0.00 2.90
603 612 4.391358 CCAAAAACGAGTAATGCTACACG 58.609 43.478 0.00 2.26 44.60 4.49
610 619 5.109815 CGAGTAATGCTACACGTACAAAC 57.890 43.478 0.00 0.00 37.35 2.93
627 636 7.098503 GTACAAACGAGTTACAAGGTTCTAC 57.901 40.000 0.00 0.00 0.00 2.59
628 637 5.663456 ACAAACGAGTTACAAGGTTCTACA 58.337 37.500 0.00 0.00 0.00 2.74
629 638 6.108015 ACAAACGAGTTACAAGGTTCTACAA 58.892 36.000 0.00 0.00 0.00 2.41
630 639 6.594937 ACAAACGAGTTACAAGGTTCTACAAA 59.405 34.615 0.00 0.00 0.00 2.83
631 640 7.281549 ACAAACGAGTTACAAGGTTCTACAAAT 59.718 33.333 0.00 0.00 0.00 2.32
632 641 8.767085 CAAACGAGTTACAAGGTTCTACAAATA 58.233 33.333 0.00 0.00 0.00 1.40
633 642 8.530269 AACGAGTTACAAGGTTCTACAAATAG 57.470 34.615 0.00 0.00 0.00 1.73
634 643 7.095270 ACGAGTTACAAGGTTCTACAAATAGG 58.905 38.462 0.00 0.00 0.00 2.57
635 644 7.095270 CGAGTTACAAGGTTCTACAAATAGGT 58.905 38.462 0.00 0.00 0.00 3.08
636 645 7.601508 CGAGTTACAAGGTTCTACAAATAGGTT 59.398 37.037 0.00 0.00 0.00 3.50
637 646 9.933723 GAGTTACAAGGTTCTACAAATAGGTTA 57.066 33.333 0.00 0.00 0.00 2.85
656 665 9.936329 ATAGGTTAATTTGATTGGTCAATAGGT 57.064 29.630 0.00 0.00 43.49 3.08
657 666 8.066612 AGGTTAATTTGATTGGTCAATAGGTG 57.933 34.615 0.00 0.00 43.49 4.00
658 667 7.124147 AGGTTAATTTGATTGGTCAATAGGTGG 59.876 37.037 0.00 0.00 43.49 4.61
659 668 7.123547 GGTTAATTTGATTGGTCAATAGGTGGA 59.876 37.037 0.00 0.00 43.49 4.02
660 669 6.780457 AATTTGATTGGTCAATAGGTGGAG 57.220 37.500 0.00 0.00 43.49 3.86
661 670 5.512942 TTTGATTGGTCAATAGGTGGAGA 57.487 39.130 0.00 0.00 43.49 3.71
662 671 4.760530 TGATTGGTCAATAGGTGGAGAG 57.239 45.455 0.00 0.00 0.00 3.20
663 672 3.455910 TGATTGGTCAATAGGTGGAGAGG 59.544 47.826 0.00 0.00 0.00 3.69
664 673 2.642171 TGGTCAATAGGTGGAGAGGT 57.358 50.000 0.00 0.00 0.00 3.85
665 674 2.187958 TGGTCAATAGGTGGAGAGGTG 58.812 52.381 0.00 0.00 0.00 4.00
666 675 1.486726 GGTCAATAGGTGGAGAGGTGG 59.513 57.143 0.00 0.00 0.00 4.61
667 676 1.134371 GTCAATAGGTGGAGAGGTGGC 60.134 57.143 0.00 0.00 0.00 5.01
668 677 0.181350 CAATAGGTGGAGAGGTGGCC 59.819 60.000 0.00 0.00 0.00 5.36
669 678 0.988678 AATAGGTGGAGAGGTGGCCC 60.989 60.000 0.00 0.00 0.00 5.80
670 679 2.194951 ATAGGTGGAGAGGTGGCCCA 62.195 60.000 0.00 0.00 0.00 5.36
680 689 2.855597 GTGGCCCACCCCCTAAAA 59.144 61.111 1.17 0.00 33.59 1.52
681 690 1.156566 GTGGCCCACCCCCTAAAAA 59.843 57.895 1.17 0.00 33.59 1.94
682 691 0.252513 GTGGCCCACCCCCTAAAAAT 60.253 55.000 1.17 0.00 33.59 1.82
683 692 0.494095 TGGCCCACCCCCTAAAAATT 59.506 50.000 0.00 0.00 33.59 1.82
684 693 1.722851 TGGCCCACCCCCTAAAAATTA 59.277 47.619 0.00 0.00 33.59 1.40
685 694 2.113777 TGGCCCACCCCCTAAAAATTAA 59.886 45.455 0.00 0.00 33.59 1.40
686 695 2.769663 GGCCCACCCCCTAAAAATTAAG 59.230 50.000 0.00 0.00 0.00 1.85
687 696 3.566997 GGCCCACCCCCTAAAAATTAAGA 60.567 47.826 0.00 0.00 0.00 2.10
688 697 3.704566 GCCCACCCCCTAAAAATTAAGAG 59.295 47.826 0.00 0.00 0.00 2.85
689 698 4.286707 CCCACCCCCTAAAAATTAAGAGG 58.713 47.826 0.00 0.00 0.00 3.69
690 699 4.016944 CCCACCCCCTAAAAATTAAGAGGA 60.017 45.833 1.86 0.00 0.00 3.71
691 700 5.201243 CCACCCCCTAAAAATTAAGAGGAG 58.799 45.833 1.86 0.00 0.00 3.69
692 701 5.201243 CACCCCCTAAAAATTAAGAGGAGG 58.799 45.833 1.86 0.93 33.28 4.30
693 702 4.232122 ACCCCCTAAAAATTAAGAGGAGGG 59.768 45.833 16.44 16.44 41.68 4.30
694 703 4.215908 CCCCTAAAAATTAAGAGGAGGGC 58.784 47.826 0.00 0.00 40.81 5.19
695 704 4.325816 CCCCTAAAAATTAAGAGGAGGGCA 60.326 45.833 0.00 0.00 40.81 5.36
696 705 5.269189 CCCTAAAAATTAAGAGGAGGGCAA 58.731 41.667 0.00 0.00 36.02 4.52
697 706 5.719563 CCCTAAAAATTAAGAGGAGGGCAAA 59.280 40.000 0.00 0.00 36.02 3.68
698 707 6.384015 CCCTAAAAATTAAGAGGAGGGCAAAT 59.616 38.462 0.00 0.00 36.02 2.32
699 708 7.092891 CCCTAAAAATTAAGAGGAGGGCAAATT 60.093 37.037 0.00 0.00 36.02 1.82
700 709 8.321353 CCTAAAAATTAAGAGGAGGGCAAATTT 58.679 33.333 0.00 0.00 0.00 1.82
703 712 9.671279 AAAAATTAAGAGGAGGGCAAATTTATG 57.329 29.630 0.00 0.00 0.00 1.90
704 713 8.608185 AAATTAAGAGGAGGGCAAATTTATGA 57.392 30.769 0.00 0.00 0.00 2.15
705 714 8.788238 AATTAAGAGGAGGGCAAATTTATGAT 57.212 30.769 0.00 0.00 0.00 2.45
706 715 8.788238 ATTAAGAGGAGGGCAAATTTATGATT 57.212 30.769 0.00 0.00 0.00 2.57
707 716 6.475596 AAGAGGAGGGCAAATTTATGATTG 57.524 37.500 0.00 0.00 0.00 2.67
708 717 4.897670 AGAGGAGGGCAAATTTATGATTGG 59.102 41.667 0.00 0.00 0.00 3.16
709 718 4.623863 AGGAGGGCAAATTTATGATTGGT 58.376 39.130 0.00 0.00 0.00 3.67
710 719 5.032170 AGGAGGGCAAATTTATGATTGGTT 58.968 37.500 0.00 0.00 0.00 3.67
711 720 6.201591 AGGAGGGCAAATTTATGATTGGTTA 58.798 36.000 0.00 0.00 0.00 2.85
712 721 6.324770 AGGAGGGCAAATTTATGATTGGTTAG 59.675 38.462 0.00 0.00 0.00 2.34
713 722 6.098266 GGAGGGCAAATTTATGATTGGTTAGT 59.902 38.462 0.00 0.00 0.00 2.24
714 723 7.286775 GGAGGGCAAATTTATGATTGGTTAGTA 59.713 37.037 0.00 0.00 0.00 1.82
715 724 8.237811 AGGGCAAATTTATGATTGGTTAGTAG 57.762 34.615 0.00 0.00 0.00 2.57
716 725 8.058847 AGGGCAAATTTATGATTGGTTAGTAGA 58.941 33.333 0.00 0.00 0.00 2.59
717 726 8.860088 GGGCAAATTTATGATTGGTTAGTAGAT 58.140 33.333 0.00 0.00 0.00 1.98
718 727 9.683069 GGCAAATTTATGATTGGTTAGTAGATG 57.317 33.333 0.00 0.00 0.00 2.90
740 749 9.512588 AGATGAAGAAAATTCTAGTCAATGTGT 57.487 29.630 0.00 0.00 36.28 3.72
746 755 9.846248 AGAAAATTCTAGTCAATGTGTAATTGC 57.154 29.630 0.00 0.00 35.34 3.56
747 756 8.673626 AAAATTCTAGTCAATGTGTAATTGCG 57.326 30.769 0.00 0.00 0.00 4.85
748 757 6.985188 ATTCTAGTCAATGTGTAATTGCGT 57.015 33.333 0.00 0.00 0.00 5.24
749 758 5.778161 TCTAGTCAATGTGTAATTGCGTG 57.222 39.130 0.00 0.00 0.00 5.34
750 759 5.234752 TCTAGTCAATGTGTAATTGCGTGT 58.765 37.500 0.00 0.00 0.00 4.49
751 760 6.391537 TCTAGTCAATGTGTAATTGCGTGTA 58.608 36.000 0.00 0.00 0.00 2.90
752 761 5.933187 AGTCAATGTGTAATTGCGTGTAA 57.067 34.783 0.00 0.00 0.00 2.41
753 762 5.685841 AGTCAATGTGTAATTGCGTGTAAC 58.314 37.500 0.00 0.00 0.00 2.50
754 763 5.468746 AGTCAATGTGTAATTGCGTGTAACT 59.531 36.000 0.00 0.00 31.75 2.24
755 764 5.788531 GTCAATGTGTAATTGCGTGTAACTC 59.211 40.000 0.00 0.00 31.75 3.01
756 765 5.699001 TCAATGTGTAATTGCGTGTAACTCT 59.301 36.000 0.00 0.00 31.75 3.24
757 766 6.203915 TCAATGTGTAATTGCGTGTAACTCTT 59.796 34.615 0.00 0.00 31.75 2.85
758 767 5.994887 TGTGTAATTGCGTGTAACTCTTT 57.005 34.783 0.00 0.00 31.75 2.52
759 768 5.743467 TGTGTAATTGCGTGTAACTCTTTG 58.257 37.500 0.00 0.00 31.75 2.77
760 769 5.294799 TGTGTAATTGCGTGTAACTCTTTGT 59.705 36.000 0.00 0.00 31.75 2.83
761 770 6.479331 TGTGTAATTGCGTGTAACTCTTTGTA 59.521 34.615 0.00 0.00 31.75 2.41
762 771 7.171848 TGTGTAATTGCGTGTAACTCTTTGTAT 59.828 33.333 0.00 0.00 31.75 2.29
763 772 7.477422 GTGTAATTGCGTGTAACTCTTTGTATG 59.523 37.037 0.00 0.00 31.75 2.39
764 773 6.554334 AATTGCGTGTAACTCTTTGTATGT 57.446 33.333 0.00 0.00 31.75 2.29
765 774 5.994887 TTGCGTGTAACTCTTTGTATGTT 57.005 34.783 0.00 0.00 31.75 2.71
766 775 5.994887 TGCGTGTAACTCTTTGTATGTTT 57.005 34.783 0.00 0.00 31.75 2.83
767 776 5.743467 TGCGTGTAACTCTTTGTATGTTTG 58.257 37.500 0.00 0.00 31.75 2.93
768 777 5.524281 TGCGTGTAACTCTTTGTATGTTTGA 59.476 36.000 0.00 0.00 31.75 2.69
769 778 5.844396 GCGTGTAACTCTTTGTATGTTTGAC 59.156 40.000 0.00 0.00 31.75 3.18
770 779 6.510478 GCGTGTAACTCTTTGTATGTTTGACA 60.510 38.462 0.00 0.00 31.75 3.58
771 780 7.572759 CGTGTAACTCTTTGTATGTTTGACAT 58.427 34.615 0.00 0.00 37.36 3.06
772 781 8.067784 CGTGTAACTCTTTGTATGTTTGACATT 58.932 33.333 0.00 0.00 35.69 2.71
798 807 8.940768 ATTGTATGTTTAACATTATTGCCCAC 57.059 30.769 16.08 6.20 39.88 4.61
799 808 6.556212 TGTATGTTTAACATTATTGCCCACG 58.444 36.000 16.08 0.00 39.88 4.94
800 809 5.906113 ATGTTTAACATTATTGCCCACGA 57.094 34.783 4.56 0.00 34.67 4.35
801 810 5.707242 TGTTTAACATTATTGCCCACGAA 57.293 34.783 0.00 0.00 0.00 3.85
802 811 5.462405 TGTTTAACATTATTGCCCACGAAC 58.538 37.500 0.00 0.00 0.00 3.95
803 812 4.705337 TTAACATTATTGCCCACGAACC 57.295 40.909 0.00 0.00 0.00 3.62
804 813 2.507407 ACATTATTGCCCACGAACCT 57.493 45.000 0.00 0.00 0.00 3.50
805 814 2.802719 ACATTATTGCCCACGAACCTT 58.197 42.857 0.00 0.00 0.00 3.50
806 815 3.161866 ACATTATTGCCCACGAACCTTT 58.838 40.909 0.00 0.00 0.00 3.11
807 816 3.576550 ACATTATTGCCCACGAACCTTTT 59.423 39.130 0.00 0.00 0.00 2.27
808 817 4.039852 ACATTATTGCCCACGAACCTTTTT 59.960 37.500 0.00 0.00 0.00 1.94
840 849 8.452534 CCTTGTAACTCGTATATATCTCCAGAC 58.547 40.741 0.00 0.00 0.00 3.51
847 861 4.034626 CGTATATATCTCCAGACTGCTCCG 59.965 50.000 0.00 0.00 0.00 4.63
1164 1230 2.230508 CCTCTGTACGTGAACCTGCTAA 59.769 50.000 0.00 0.00 0.00 3.09
1168 1234 2.101082 TGTACGTGAACCTGCTAACACA 59.899 45.455 0.00 0.00 33.56 3.72
1169 1235 1.578583 ACGTGAACCTGCTAACACAC 58.421 50.000 0.00 0.00 33.56 3.82
1170 1236 1.134640 ACGTGAACCTGCTAACACACA 60.135 47.619 0.00 0.00 33.56 3.72
1171 1237 1.526887 CGTGAACCTGCTAACACACAG 59.473 52.381 0.00 0.00 33.56 3.66
1172 1238 1.264288 GTGAACCTGCTAACACACAGC 59.736 52.381 0.00 0.00 39.56 4.40
1186 1252 3.633525 ACACACAGCTTGATTGTTGTCAT 59.366 39.130 3.37 0.00 29.08 3.06
1191 1257 4.460034 ACAGCTTGATTGTTGTCATGCATA 59.540 37.500 0.00 0.00 46.11 3.14
1194 1260 5.882000 AGCTTGATTGTTGTCATGCATACTA 59.118 36.000 0.00 0.00 46.11 1.82
1199 1265 5.966636 TTGTTGTCATGCATACTATCGTC 57.033 39.130 0.00 0.00 0.00 4.20
1202 1270 3.977427 TGTCATGCATACTATCGTCCAC 58.023 45.455 0.00 0.00 0.00 4.02
1206 1274 2.235891 TGCATACTATCGTCCACGGAT 58.764 47.619 0.00 0.00 40.29 4.18
1212 1280 6.625300 GCATACTATCGTCCACGGATATTTCT 60.625 42.308 0.00 0.00 40.29 2.52
1218 1286 2.100252 GTCCACGGATATTTCTCGGTGA 59.900 50.000 11.81 0.00 44.68 4.02
1224 1292 3.736252 CGGATATTTCTCGGTGATGTGTC 59.264 47.826 0.00 0.00 0.00 3.67
1228 1296 3.961480 TTTCTCGGTGATGTGTCTGAT 57.039 42.857 0.00 0.00 0.00 2.90
1247 1323 6.418819 GTCTGATGAATTTGGTTCTGTTTGTG 59.581 38.462 0.00 0.00 37.72 3.33
1276 1352 0.902531 AGATGTACAAGGACACGGGG 59.097 55.000 0.00 0.00 30.52 5.73
1556 1632 2.766970 TTTTTCTACACTGCGTTGCC 57.233 45.000 0.00 0.00 0.00 4.52
1557 1633 1.961793 TTTTCTACACTGCGTTGCCT 58.038 45.000 0.00 0.00 0.00 4.75
1558 1634 1.961793 TTTCTACACTGCGTTGCCTT 58.038 45.000 0.00 0.00 0.00 4.35
1559 1635 1.961793 TTCTACACTGCGTTGCCTTT 58.038 45.000 0.00 0.00 0.00 3.11
1560 1636 1.961793 TCTACACTGCGTTGCCTTTT 58.038 45.000 0.00 0.00 0.00 2.27
1561 1637 2.294074 TCTACACTGCGTTGCCTTTTT 58.706 42.857 0.00 0.00 0.00 1.94
1583 1659 1.890489 TCTCTACACTGCGTTGCCTTA 59.110 47.619 0.00 0.00 0.00 2.69
1591 1667 2.678336 ACTGCGTTGCCTTAGATTAAGC 59.322 45.455 0.00 0.00 34.46 3.09
1593 1669 4.119862 CTGCGTTGCCTTAGATTAAGCTA 58.880 43.478 0.00 0.00 34.46 3.32
1601 1677 5.696724 TGCCTTAGATTAAGCTATTTCGAGC 59.303 40.000 0.44 0.31 43.19 5.03
1611 1687 4.251960 GCTATTTCGAGCTCAAGTTCAC 57.748 45.455 15.40 0.00 39.50 3.18
1612 1688 3.062774 GCTATTTCGAGCTCAAGTTCACC 59.937 47.826 15.40 0.00 39.50 4.02
1629 1739 1.123928 ACCTAGCTCAGCGCCTATTT 58.876 50.000 2.29 0.00 40.39 1.40
1635 1745 1.330829 GCTCAGCGCCTATTTGTTACC 59.669 52.381 2.29 0.00 0.00 2.85
1649 1759 3.085443 TGTTACCGTTGCACAAATTGG 57.915 42.857 0.00 0.00 0.00 3.16
1675 1785 4.334759 CAGTTTCAGAGCCATCAGGTATTG 59.665 45.833 0.00 0.00 37.19 1.90
1702 1812 4.338400 TCGCAGAGCTAGAAGCATTTACTA 59.662 41.667 1.22 0.00 45.56 1.82
1802 1913 0.100682 GTCGGCGAGAGTTATCTGCA 59.899 55.000 11.20 0.00 35.30 4.41
1803 1914 0.100682 TCGGCGAGAGTTATCTGCAC 59.899 55.000 4.99 0.00 35.30 4.57
1804 1915 1.202973 CGGCGAGAGTTATCTGCACG 61.203 60.000 0.00 0.00 35.30 5.34
1805 1916 0.179134 GGCGAGAGTTATCTGCACGT 60.179 55.000 0.00 0.00 35.30 4.49
1851 1962 1.079405 TCCGCCACGTCTCATTTCC 60.079 57.895 0.00 0.00 0.00 3.13
2317 2438 0.749091 ATTAGCGCCTGCATGCAAGA 60.749 50.000 22.88 0.00 46.23 3.02
2319 2440 1.647545 TAGCGCCTGCATGCAAGAAC 61.648 55.000 22.88 11.08 46.23 3.01
2342 2466 9.655769 GAACATGTTTCATGCAGTACATATTAG 57.344 33.333 13.36 0.00 36.64 1.73
2381 2505 8.586879 AAATTCAAATAAAGAAGAGAGAGGGG 57.413 34.615 0.00 0.00 0.00 4.79
2382 2506 6.952605 TTCAAATAAAGAAGAGAGAGGGGA 57.047 37.500 0.00 0.00 0.00 4.81
2383 2507 6.552445 TCAAATAAAGAAGAGAGAGGGGAG 57.448 41.667 0.00 0.00 0.00 4.30
2384 2508 6.026186 TCAAATAAAGAAGAGAGAGGGGAGT 58.974 40.000 0.00 0.00 0.00 3.85
2385 2509 6.155393 TCAAATAAAGAAGAGAGAGGGGAGTC 59.845 42.308 0.00 0.00 0.00 3.36
2386 2510 3.551635 AAAGAAGAGAGAGGGGAGTCA 57.448 47.619 0.00 0.00 0.00 3.41
2415 2895 3.493503 CGATTCCAAGCCGGTTAGTAATC 59.506 47.826 1.90 6.35 35.57 1.75
2432 2912 1.291877 ATCGCACTTCGTGTTGGAGC 61.292 55.000 0.00 0.00 39.67 4.70
2453 2933 2.281484 GCACGGTGTGGTGTGGAT 60.281 61.111 10.24 0.00 40.08 3.41
2454 2934 1.896660 GCACGGTGTGGTGTGGATT 60.897 57.895 10.24 0.00 40.08 3.01
2480 2960 2.282147 TAACGACATACCGTGCGGGG 62.282 60.000 15.44 6.62 42.54 5.73
2483 2963 1.145377 GACATACCGTGCGGGGAAT 59.855 57.895 15.44 2.91 41.60 3.01
2484 2964 0.390124 GACATACCGTGCGGGGAATA 59.610 55.000 15.44 0.00 41.60 1.75
2487 2967 1.125633 ATACCGTGCGGGGAATAAGT 58.874 50.000 15.44 0.00 41.60 2.24
2488 2968 1.774110 TACCGTGCGGGGAATAAGTA 58.226 50.000 15.44 0.00 41.60 2.24
2489 2969 0.462789 ACCGTGCGGGGAATAAGTAG 59.537 55.000 15.44 0.00 41.60 2.57
2503 2985 1.871418 AAGTAGATGCCAGCCTCAGA 58.129 50.000 0.00 0.00 0.00 3.27
2504 2986 1.412079 AGTAGATGCCAGCCTCAGAG 58.588 55.000 0.00 0.00 0.00 3.35
2505 2987 0.249826 GTAGATGCCAGCCTCAGAGC 60.250 60.000 0.00 0.00 0.00 4.09
2506 2988 0.688749 TAGATGCCAGCCTCAGAGCA 60.689 55.000 0.00 0.00 40.00 4.26
2507 2989 1.077930 GATGCCAGCCTCAGAGCAA 60.078 57.895 0.00 0.00 38.99 3.91
2508 2990 1.077644 ATGCCAGCCTCAGAGCAAG 60.078 57.895 0.00 0.00 38.99 4.01
2510 2992 2.818714 CCAGCCTCAGAGCAAGCG 60.819 66.667 0.00 0.00 34.23 4.68
2511 2993 2.818714 CAGCCTCAGAGCAAGCGG 60.819 66.667 0.00 0.00 34.23 5.52
2512 2994 4.774503 AGCCTCAGAGCAAGCGGC 62.775 66.667 0.00 0.00 45.30 6.53
2523 3005 2.931512 GCAAGCGGCTAAACCAATTA 57.068 45.000 1.35 0.00 39.03 1.40
2574 3063 3.967335 GGCGACTCGATCCTCCGG 61.967 72.222 1.63 0.00 0.00 5.14
2802 3291 1.667830 CGAGTGGCTCGCCTTTGAA 60.668 57.895 9.65 0.00 46.75 2.69
2871 3360 3.790437 ATGGTGCTCCCTCGGCTG 61.790 66.667 1.59 0.00 0.00 4.85
2902 3391 3.691342 CCTTGTCGGAGCCGTCCA 61.691 66.667 8.96 4.54 44.18 4.02
2935 3424 1.302192 GTGTGCTCGCCCAACCTTA 60.302 57.895 0.00 0.00 0.00 2.69
2940 3429 1.152383 GCTCGCCCAACCTTATCGTC 61.152 60.000 0.00 0.00 0.00 4.20
2949 3438 1.653533 CCTTATCGTCGCGGTCGTC 60.654 63.158 19.63 1.50 36.96 4.20
3066 3559 3.717400 TCTATCAAGGCAAGCTCTACG 57.283 47.619 0.00 0.00 0.00 3.51
3074 3567 0.458716 GCAAGCTCTACGTCCTCCAC 60.459 60.000 0.00 0.00 0.00 4.02
3075 3568 0.173708 CAAGCTCTACGTCCTCCACC 59.826 60.000 0.00 0.00 0.00 4.61
3078 3571 1.668101 GCTCTACGTCCTCCACCAGG 61.668 65.000 0.00 0.00 45.15 4.45
3088 3581 2.672996 CCACCAGGACAAAGGCCG 60.673 66.667 0.00 0.00 36.89 6.13
3089 3582 2.429930 CACCAGGACAAAGGCCGA 59.570 61.111 0.00 0.00 0.00 5.54
3122 3615 4.131088 GTCGGCGAGGACAGGGAC 62.131 72.222 11.20 0.00 36.91 4.46
3162 3655 0.102481 CCGGGTCGACAGACTTATGG 59.898 60.000 18.91 2.79 46.29 2.74
3175 3677 1.755380 ACTTATGGAGGTCGGCTACAC 59.245 52.381 0.00 0.00 0.00 2.90
3177 3679 0.032912 TATGGAGGTCGGCTACACCA 60.033 55.000 9.02 9.02 39.32 4.17
3213 3715 1.617018 CCTCCTGGAATCTGACGGCA 61.617 60.000 0.00 0.00 34.57 5.69
3227 3729 3.873883 GGCACGCTGCTGCTGATC 61.874 66.667 14.03 0.36 44.28 2.92
3247 3749 1.967066 CCGCAGAGAGGATCCTAACAT 59.033 52.381 16.16 0.50 33.66 2.71
3248 3750 3.157881 CCGCAGAGAGGATCCTAACATA 58.842 50.000 16.16 0.00 33.66 2.29
3249 3751 3.574396 CCGCAGAGAGGATCCTAACATAA 59.426 47.826 16.16 0.00 33.66 1.90
3250 3752 4.039245 CCGCAGAGAGGATCCTAACATAAA 59.961 45.833 16.16 0.00 33.66 1.40
3251 3753 5.279708 CCGCAGAGAGGATCCTAACATAAAT 60.280 44.000 16.16 0.00 33.66 1.40
3252 3754 5.866633 CGCAGAGAGGATCCTAACATAAATC 59.133 44.000 16.16 0.00 33.66 2.17
3253 3755 6.169800 GCAGAGAGGATCCTAACATAAATCC 58.830 44.000 16.16 0.00 38.37 3.01
3254 3756 6.393990 CAGAGAGGATCCTAACATAAATCCG 58.606 44.000 16.16 0.00 42.09 4.18
3255 3757 6.015010 CAGAGAGGATCCTAACATAAATCCGT 60.015 42.308 16.16 0.00 42.09 4.69
3256 3758 6.555360 AGAGAGGATCCTAACATAAATCCGTT 59.445 38.462 16.16 0.00 42.09 4.44
3257 3759 6.760291 AGAGGATCCTAACATAAATCCGTTC 58.240 40.000 16.16 0.00 42.09 3.95
3258 3760 5.866207 AGGATCCTAACATAAATCCGTTCC 58.134 41.667 14.27 0.00 42.09 3.62
3259 3761 5.001874 GGATCCTAACATAAATCCGTTCCC 58.998 45.833 3.84 0.00 0.00 3.97
3260 3762 5.455612 GGATCCTAACATAAATCCGTTCCCA 60.456 44.000 3.84 0.00 0.00 4.37
3261 3763 5.640158 TCCTAACATAAATCCGTTCCCAT 57.360 39.130 0.00 0.00 0.00 4.00
3262 3764 6.008696 TCCTAACATAAATCCGTTCCCATT 57.991 37.500 0.00 0.00 0.00 3.16
3263 3765 6.059484 TCCTAACATAAATCCGTTCCCATTC 58.941 40.000 0.00 0.00 0.00 2.67
3264 3766 6.062095 CCTAACATAAATCCGTTCCCATTCT 58.938 40.000 0.00 0.00 0.00 2.40
3265 3767 6.546034 CCTAACATAAATCCGTTCCCATTCTT 59.454 38.462 0.00 0.00 0.00 2.52
3266 3768 5.835113 ACATAAATCCGTTCCCATTCTTG 57.165 39.130 0.00 0.00 0.00 3.02
3267 3769 4.644685 ACATAAATCCGTTCCCATTCTTGG 59.355 41.667 0.00 0.00 43.23 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.624776 CAATCCTTCCAAATTGGTACTAATCTC 58.375 37.037 12.28 0.00 39.03 2.75
1 2 8.116026 ACAATCCTTCCAAATTGGTACTAATCT 58.884 33.333 12.28 0.00 39.03 2.40
2 3 8.293699 ACAATCCTTCCAAATTGGTACTAATC 57.706 34.615 12.28 0.00 39.03 1.75
3 4 7.342026 GGACAATCCTTCCAAATTGGTACTAAT 59.658 37.037 12.28 0.00 37.23 1.73
4 5 6.661805 GGACAATCCTTCCAAATTGGTACTAA 59.338 38.462 12.28 0.00 37.23 2.24
5 6 6.011981 AGGACAATCCTTCCAAATTGGTACTA 60.012 38.462 12.28 0.00 46.91 1.82
6 7 5.016831 GGACAATCCTTCCAAATTGGTACT 58.983 41.667 12.28 0.00 37.23 2.73
7 8 5.016831 AGGACAATCCTTCCAAATTGGTAC 58.983 41.667 12.28 0.00 46.91 3.34
8 9 5.269554 AGGACAATCCTTCCAAATTGGTA 57.730 39.130 12.28 1.00 46.91 3.25
9 10 4.132122 AGGACAATCCTTCCAAATTGGT 57.868 40.909 12.28 0.00 46.91 3.67
20 21 5.826945 GCTCCATGCTCAAGGACAATCCT 62.827 52.174 0.00 0.00 43.55 3.24
21 22 2.295885 CTCCATGCTCAAGGACAATCC 58.704 52.381 0.00 0.00 36.58 3.01
22 23 1.674962 GCTCCATGCTCAAGGACAATC 59.325 52.381 0.00 0.00 38.95 2.67
23 24 1.760192 GCTCCATGCTCAAGGACAAT 58.240 50.000 0.00 0.00 38.95 2.71
24 25 0.674581 CGCTCCATGCTCAAGGACAA 60.675 55.000 0.00 0.00 40.11 3.18
25 26 1.078918 CGCTCCATGCTCAAGGACA 60.079 57.895 0.00 0.00 40.11 4.02
26 27 0.674895 AACGCTCCATGCTCAAGGAC 60.675 55.000 0.00 0.00 40.11 3.85
27 28 0.036732 AAACGCTCCATGCTCAAGGA 59.963 50.000 0.00 0.00 40.11 3.36
28 29 0.883833 AAAACGCTCCATGCTCAAGG 59.116 50.000 0.00 0.00 40.11 3.61
29 30 1.536766 TCAAAACGCTCCATGCTCAAG 59.463 47.619 0.00 0.00 40.11 3.02
30 31 1.603456 TCAAAACGCTCCATGCTCAA 58.397 45.000 0.00 0.00 40.11 3.02
31 32 1.825090 ATCAAAACGCTCCATGCTCA 58.175 45.000 0.00 0.00 40.11 4.26
32 33 2.523015 CAATCAAAACGCTCCATGCTC 58.477 47.619 0.00 0.00 40.11 4.26
33 34 1.203052 CCAATCAAAACGCTCCATGCT 59.797 47.619 0.00 0.00 40.11 3.79
34 35 1.632422 CCAATCAAAACGCTCCATGC 58.368 50.000 0.00 0.00 38.57 4.06
35 36 1.203052 AGCCAATCAAAACGCTCCATG 59.797 47.619 0.00 0.00 0.00 3.66
36 37 1.549203 AGCCAATCAAAACGCTCCAT 58.451 45.000 0.00 0.00 0.00 3.41
37 38 1.327303 AAGCCAATCAAAACGCTCCA 58.673 45.000 0.00 0.00 0.00 3.86
38 39 3.128589 TGATAAGCCAATCAAAACGCTCC 59.871 43.478 0.00 0.00 32.97 4.70
39 40 4.355543 TGATAAGCCAATCAAAACGCTC 57.644 40.909 0.00 0.00 32.97 5.03
40 41 4.989279 ATGATAAGCCAATCAAAACGCT 57.011 36.364 2.95 0.00 39.25 5.07
41 42 6.363357 GGATTATGATAAGCCAATCAAAACGC 59.637 38.462 14.19 0.00 39.25 4.84
42 43 7.379529 GTGGATTATGATAAGCCAATCAAAACG 59.620 37.037 22.30 0.00 39.25 3.60
43 44 8.416329 AGTGGATTATGATAAGCCAATCAAAAC 58.584 33.333 22.30 9.35 39.25 2.43
44 45 8.537728 AGTGGATTATGATAAGCCAATCAAAA 57.462 30.769 22.30 0.00 39.25 2.44
45 46 8.169977 GAGTGGATTATGATAAGCCAATCAAA 57.830 34.615 32.38 7.73 46.33 2.69
46 47 7.750229 GAGTGGATTATGATAAGCCAATCAA 57.250 36.000 32.38 8.37 46.33 2.57
49 50 7.083062 TCAGAGTGGATTATGATAAGCCAAT 57.917 36.000 22.30 21.42 37.46 3.16
50 51 6.499106 TCAGAGTGGATTATGATAAGCCAA 57.501 37.500 22.30 5.31 37.46 4.52
51 52 6.499106 TTCAGAGTGGATTATGATAAGCCA 57.501 37.500 17.48 17.48 32.62 4.75
52 53 7.393216 AGATTCAGAGTGGATTATGATAAGCC 58.607 38.462 12.35 12.35 0.00 4.35
53 54 7.548780 GGAGATTCAGAGTGGATTATGATAAGC 59.451 40.741 0.00 0.00 0.00 3.09
54 55 7.758980 CGGAGATTCAGAGTGGATTATGATAAG 59.241 40.741 0.00 0.00 0.00 1.73
55 56 7.233553 ACGGAGATTCAGAGTGGATTATGATAA 59.766 37.037 0.00 0.00 0.00 1.75
56 57 6.721668 ACGGAGATTCAGAGTGGATTATGATA 59.278 38.462 0.00 0.00 0.00 2.15
57 58 5.541868 ACGGAGATTCAGAGTGGATTATGAT 59.458 40.000 0.00 0.00 0.00 2.45
58 59 4.895889 ACGGAGATTCAGAGTGGATTATGA 59.104 41.667 0.00 0.00 0.00 2.15
59 60 5.207110 ACGGAGATTCAGAGTGGATTATG 57.793 43.478 0.00 0.00 0.00 1.90
60 61 4.022762 CGACGGAGATTCAGAGTGGATTAT 60.023 45.833 0.00 0.00 0.00 1.28
61 62 3.315470 CGACGGAGATTCAGAGTGGATTA 59.685 47.826 0.00 0.00 0.00 1.75
62 63 2.099921 CGACGGAGATTCAGAGTGGATT 59.900 50.000 0.00 0.00 0.00 3.01
63 64 1.678627 CGACGGAGATTCAGAGTGGAT 59.321 52.381 0.00 0.00 0.00 3.41
64 65 1.095600 CGACGGAGATTCAGAGTGGA 58.904 55.000 0.00 0.00 0.00 4.02
65 66 0.526524 GCGACGGAGATTCAGAGTGG 60.527 60.000 0.00 0.00 0.00 4.00
66 67 0.453793 AGCGACGGAGATTCAGAGTG 59.546 55.000 0.00 0.00 0.00 3.51
67 68 2.039818 TAGCGACGGAGATTCAGAGT 57.960 50.000 0.00 0.00 0.00 3.24
68 69 2.412195 CGATAGCGACGGAGATTCAGAG 60.412 54.545 0.00 0.00 40.82 3.35
69 70 1.531578 CGATAGCGACGGAGATTCAGA 59.468 52.381 0.00 0.00 40.82 3.27
70 71 1.957089 CGATAGCGACGGAGATTCAG 58.043 55.000 0.00 0.00 40.82 3.02
89 90 5.148234 AAGTGAATCACTCGTTAGAGCAGC 61.148 45.833 17.02 0.00 44.62 5.25
90 91 4.489810 AAGTGAATCACTCGTTAGAGCAG 58.510 43.478 17.02 0.00 44.62 4.24
91 92 4.521130 AAGTGAATCACTCGTTAGAGCA 57.479 40.909 17.02 0.00 44.62 4.26
92 93 7.096394 GCTATTAAGTGAATCACTCGTTAGAGC 60.096 40.741 17.02 15.47 44.62 4.09
93 94 8.132362 AGCTATTAAGTGAATCACTCGTTAGAG 58.868 37.037 17.02 10.22 44.62 2.43
94 95 7.997482 AGCTATTAAGTGAATCACTCGTTAGA 58.003 34.615 17.02 0.03 44.62 2.10
95 96 8.132362 AGAGCTATTAAGTGAATCACTCGTTAG 58.868 37.037 17.02 16.30 44.62 2.34
96 97 7.915923 CAGAGCTATTAAGTGAATCACTCGTTA 59.084 37.037 17.02 2.73 44.62 3.18
97 98 6.754209 CAGAGCTATTAAGTGAATCACTCGTT 59.246 38.462 17.02 3.78 44.62 3.85
98 99 6.269315 CAGAGCTATTAAGTGAATCACTCGT 58.731 40.000 17.02 4.54 44.62 4.18
99 100 5.174761 GCAGAGCTATTAAGTGAATCACTCG 59.825 44.000 17.02 4.60 44.62 4.18
100 101 6.279882 AGCAGAGCTATTAAGTGAATCACTC 58.720 40.000 17.02 2.89 39.67 3.51
101 102 6.232581 AGCAGAGCTATTAAGTGAATCACT 57.767 37.500 10.56 10.56 41.38 3.41
102 103 6.917217 AAGCAGAGCTATTAAGTGAATCAC 57.083 37.500 5.02 5.02 38.25 3.06
103 104 7.658982 CCATAAGCAGAGCTATTAAGTGAATCA 59.341 37.037 0.00 0.00 38.25 2.57
104 105 7.875041 TCCATAAGCAGAGCTATTAAGTGAATC 59.125 37.037 0.00 0.00 38.25 2.52
105 106 7.659390 GTCCATAAGCAGAGCTATTAAGTGAAT 59.341 37.037 0.00 0.00 38.25 2.57
106 107 6.986817 GTCCATAAGCAGAGCTATTAAGTGAA 59.013 38.462 0.00 0.00 38.25 3.18
107 108 6.098266 TGTCCATAAGCAGAGCTATTAAGTGA 59.902 38.462 0.00 0.00 38.25 3.41
108 109 6.201806 GTGTCCATAAGCAGAGCTATTAAGTG 59.798 42.308 0.00 0.00 38.25 3.16
109 110 6.098982 AGTGTCCATAAGCAGAGCTATTAAGT 59.901 38.462 0.00 0.00 38.25 2.24
110 111 6.520272 AGTGTCCATAAGCAGAGCTATTAAG 58.480 40.000 0.00 0.00 38.25 1.85
111 112 6.485830 AGTGTCCATAAGCAGAGCTATTAA 57.514 37.500 0.00 0.00 38.25 1.40
112 113 6.098266 TCAAGTGTCCATAAGCAGAGCTATTA 59.902 38.462 0.00 0.00 38.25 0.98
113 114 5.104776 TCAAGTGTCCATAAGCAGAGCTATT 60.105 40.000 0.00 0.00 38.25 1.73
114 115 4.406972 TCAAGTGTCCATAAGCAGAGCTAT 59.593 41.667 0.00 0.00 38.25 2.97
115 116 3.769300 TCAAGTGTCCATAAGCAGAGCTA 59.231 43.478 0.00 0.00 38.25 3.32
116 117 2.568956 TCAAGTGTCCATAAGCAGAGCT 59.431 45.455 0.00 0.00 42.56 4.09
117 118 2.977914 TCAAGTGTCCATAAGCAGAGC 58.022 47.619 0.00 0.00 0.00 4.09
118 119 4.763073 TCATCAAGTGTCCATAAGCAGAG 58.237 43.478 0.00 0.00 0.00 3.35
119 120 4.467438 TCTCATCAAGTGTCCATAAGCAGA 59.533 41.667 0.00 0.00 0.00 4.26
120 121 4.763073 TCTCATCAAGTGTCCATAAGCAG 58.237 43.478 0.00 0.00 0.00 4.24
121 122 4.467438 TCTCTCATCAAGTGTCCATAAGCA 59.533 41.667 0.00 0.00 0.00 3.91
122 123 5.016051 TCTCTCATCAAGTGTCCATAAGC 57.984 43.478 0.00 0.00 0.00 3.09
123 124 6.320926 TCTCTCTCTCATCAAGTGTCCATAAG 59.679 42.308 0.00 0.00 0.00 1.73
124 125 6.190587 TCTCTCTCTCATCAAGTGTCCATAA 58.809 40.000 0.00 0.00 0.00 1.90
125 126 5.760131 TCTCTCTCTCATCAAGTGTCCATA 58.240 41.667 0.00 0.00 0.00 2.74
126 127 4.608269 TCTCTCTCTCATCAAGTGTCCAT 58.392 43.478 0.00 0.00 0.00 3.41
127 128 4.015764 CTCTCTCTCTCATCAAGTGTCCA 58.984 47.826 0.00 0.00 0.00 4.02
128 129 4.269183 TCTCTCTCTCTCATCAAGTGTCC 58.731 47.826 0.00 0.00 0.00 4.02
129 130 5.185454 TCTCTCTCTCTCTCATCAAGTGTC 58.815 45.833 0.00 0.00 0.00 3.67
130 131 5.045651 TCTCTCTCTCTCTCTCATCAAGTGT 60.046 44.000 0.00 0.00 0.00 3.55
131 132 5.430886 TCTCTCTCTCTCTCTCATCAAGTG 58.569 45.833 0.00 0.00 0.00 3.16
132 133 5.698741 TCTCTCTCTCTCTCTCATCAAGT 57.301 43.478 0.00 0.00 0.00 3.16
133 134 8.681486 TTAATCTCTCTCTCTCTCTCATCAAG 57.319 38.462 0.00 0.00 0.00 3.02
134 135 8.493607 TCTTAATCTCTCTCTCTCTCTCATCAA 58.506 37.037 0.00 0.00 0.00 2.57
135 136 8.033178 TCTTAATCTCTCTCTCTCTCTCATCA 57.967 38.462 0.00 0.00 0.00 3.07
136 137 8.908786 TTCTTAATCTCTCTCTCTCTCTCATC 57.091 38.462 0.00 0.00 0.00 2.92
137 138 7.446625 GCTTCTTAATCTCTCTCTCTCTCTCAT 59.553 40.741 0.00 0.00 0.00 2.90
138 139 6.767902 GCTTCTTAATCTCTCTCTCTCTCTCA 59.232 42.308 0.00 0.00 0.00 3.27
139 140 6.995091 AGCTTCTTAATCTCTCTCTCTCTCTC 59.005 42.308 0.00 0.00 0.00 3.20
140 141 6.904626 AGCTTCTTAATCTCTCTCTCTCTCT 58.095 40.000 0.00 0.00 0.00 3.10
141 142 7.500559 AGAAGCTTCTTAATCTCTCTCTCTCTC 59.499 40.741 23.49 0.00 32.55 3.20
142 143 7.349598 AGAAGCTTCTTAATCTCTCTCTCTCT 58.650 38.462 23.49 0.00 32.55 3.10
143 144 7.255277 GGAGAAGCTTCTTAATCTCTCTCTCTC 60.255 44.444 29.02 10.94 38.64 3.20
144 145 6.547510 GGAGAAGCTTCTTAATCTCTCTCTCT 59.452 42.308 29.02 1.47 38.64 3.10
145 146 6.321181 TGGAGAAGCTTCTTAATCTCTCTCTC 59.679 42.308 29.02 11.99 38.64 3.20
146 147 6.194235 TGGAGAAGCTTCTTAATCTCTCTCT 58.806 40.000 29.02 2.68 38.64 3.10
147 148 6.463995 TGGAGAAGCTTCTTAATCTCTCTC 57.536 41.667 29.02 12.70 38.64 3.20
148 149 6.469782 CTGGAGAAGCTTCTTAATCTCTCT 57.530 41.667 29.02 3.48 38.64 3.10
178 179 5.830000 ATAACTTTCAGCGGAATAAACCC 57.170 39.130 0.00 0.00 31.93 4.11
179 180 6.848451 TGAATAACTTTCAGCGGAATAAACC 58.152 36.000 0.00 0.00 31.93 3.27
180 181 9.997482 TTATGAATAACTTTCAGCGGAATAAAC 57.003 29.630 0.00 0.00 31.93 2.01
183 184 9.554395 TGATTATGAATAACTTTCAGCGGAATA 57.446 29.630 0.00 0.00 31.93 1.75
184 185 8.450578 TGATTATGAATAACTTTCAGCGGAAT 57.549 30.769 0.00 0.00 31.93 3.01
185 186 7.857734 TGATTATGAATAACTTTCAGCGGAA 57.142 32.000 0.00 0.00 0.00 4.30
186 187 7.857734 TTGATTATGAATAACTTTCAGCGGA 57.142 32.000 0.00 0.00 0.00 5.54
187 188 8.909708 TTTTGATTATGAATAACTTTCAGCGG 57.090 30.769 0.00 0.00 0.00 5.52
201 202 9.905713 AGTAAGAGCAACCTATTTTGATTATGA 57.094 29.630 0.00 0.00 0.00 2.15
204 205 9.959721 AAGAGTAAGAGCAACCTATTTTGATTA 57.040 29.630 0.00 0.00 0.00 1.75
205 206 8.870075 AAGAGTAAGAGCAACCTATTTTGATT 57.130 30.769 0.00 0.00 0.00 2.57
206 207 9.384764 GTAAGAGTAAGAGCAACCTATTTTGAT 57.615 33.333 0.00 0.00 0.00 2.57
207 208 8.594550 AGTAAGAGTAAGAGCAACCTATTTTGA 58.405 33.333 0.00 0.00 0.00 2.69
208 209 8.779354 AGTAAGAGTAAGAGCAACCTATTTTG 57.221 34.615 0.00 0.00 0.00 2.44
212 213 9.649316 AGATTAGTAAGAGTAAGAGCAACCTAT 57.351 33.333 0.00 0.00 0.00 2.57
214 215 7.964666 AGATTAGTAAGAGTAAGAGCAACCT 57.035 36.000 0.00 0.00 0.00 3.50
215 216 9.738832 CTTAGATTAGTAAGAGTAAGAGCAACC 57.261 37.037 0.00 0.00 32.52 3.77
216 217 9.738832 CCTTAGATTAGTAAGAGTAAGAGCAAC 57.261 37.037 8.99 0.00 32.52 4.17
217 218 9.696572 TCCTTAGATTAGTAAGAGTAAGAGCAA 57.303 33.333 8.99 0.00 32.52 3.91
218 219 9.344772 CTCCTTAGATTAGTAAGAGTAAGAGCA 57.655 37.037 8.99 0.00 32.52 4.26
219 220 9.563748 TCTCCTTAGATTAGTAAGAGTAAGAGC 57.436 37.037 8.99 0.00 32.52 4.09
234 235 9.301448 GGTGCTACCTCGAAATCTCCTTAGATT 62.301 44.444 0.00 0.00 43.39 2.40
235 236 5.010213 GTGCTACCTCGAAATCTCCTTAGAT 59.990 44.000 0.00 0.00 44.67 1.98
236 237 4.338682 GTGCTACCTCGAAATCTCCTTAGA 59.661 45.833 0.00 0.00 35.80 2.10
237 238 4.500035 GGTGCTACCTCGAAATCTCCTTAG 60.500 50.000 0.00 0.00 34.73 2.18
238 239 3.383825 GGTGCTACCTCGAAATCTCCTTA 59.616 47.826 0.00 0.00 34.73 2.69
239 240 2.168728 GGTGCTACCTCGAAATCTCCTT 59.831 50.000 0.00 0.00 34.73 3.36
240 241 1.757699 GGTGCTACCTCGAAATCTCCT 59.242 52.381 0.00 0.00 34.73 3.69
241 242 1.536284 CGGTGCTACCTCGAAATCTCC 60.536 57.143 4.21 0.00 35.66 3.71
242 243 1.841450 CGGTGCTACCTCGAAATCTC 58.159 55.000 4.21 0.00 35.66 2.75
243 244 0.179108 GCGGTGCTACCTCGAAATCT 60.179 55.000 4.21 0.00 35.66 2.40
244 245 1.152383 GGCGGTGCTACCTCGAAATC 61.152 60.000 4.21 0.00 35.66 2.17
245 246 1.153429 GGCGGTGCTACCTCGAAAT 60.153 57.895 4.21 0.00 35.66 2.17
246 247 2.263540 GGCGGTGCTACCTCGAAA 59.736 61.111 4.21 0.00 35.66 3.46
247 248 2.678934 AGGCGGTGCTACCTCGAA 60.679 61.111 4.21 0.00 35.66 3.71
248 249 3.449227 CAGGCGGTGCTACCTCGA 61.449 66.667 4.21 0.00 35.66 4.04
249 250 3.296709 AACAGGCGGTGCTACCTCG 62.297 63.158 0.00 0.00 35.66 4.63
250 251 1.741770 CAACAGGCGGTGCTACCTC 60.742 63.158 0.00 0.00 35.66 3.85
251 252 2.347490 CAACAGGCGGTGCTACCT 59.653 61.111 0.00 0.00 35.66 3.08
252 253 2.746277 CCAACAGGCGGTGCTACC 60.746 66.667 0.00 0.00 34.05 3.18
253 254 1.599797 AACCAACAGGCGGTGCTAC 60.600 57.895 0.00 0.00 36.67 3.58
254 255 1.599518 CAACCAACAGGCGGTGCTA 60.600 57.895 0.00 0.00 36.67 3.49
255 256 2.906897 CAACCAACAGGCGGTGCT 60.907 61.111 0.00 0.00 36.67 4.40
256 257 4.645921 GCAACCAACAGGCGGTGC 62.646 66.667 0.00 0.00 36.67 5.01
257 258 3.198236 CTGCAACCAACAGGCGGTG 62.198 63.158 0.00 0.00 36.67 4.94
258 259 2.906897 CTGCAACCAACAGGCGGT 60.907 61.111 0.00 0.00 38.85 5.68
259 260 1.169661 TTACTGCAACCAACAGGCGG 61.170 55.000 0.00 0.00 39.55 6.13
260 261 0.238289 CTTACTGCAACCAACAGGCG 59.762 55.000 0.00 0.00 39.55 5.52
261 262 0.039165 GCTTACTGCAACCAACAGGC 60.039 55.000 0.00 0.00 42.31 4.85
262 263 1.537202 GAGCTTACTGCAACCAACAGG 59.463 52.381 0.00 0.00 45.94 4.00
263 264 2.498167 AGAGCTTACTGCAACCAACAG 58.502 47.619 0.00 0.00 45.94 3.16
264 265 2.638480 AGAGCTTACTGCAACCAACA 57.362 45.000 0.00 0.00 45.94 3.33
265 266 3.680458 GTCTAGAGCTTACTGCAACCAAC 59.320 47.826 0.00 0.00 45.94 3.77
266 267 3.578716 AGTCTAGAGCTTACTGCAACCAA 59.421 43.478 0.00 0.00 45.94 3.67
267 268 3.165875 AGTCTAGAGCTTACTGCAACCA 58.834 45.455 0.00 0.00 45.94 3.67
268 269 3.878160 AGTCTAGAGCTTACTGCAACC 57.122 47.619 0.00 0.00 45.94 3.77
269 270 5.746245 CACATAGTCTAGAGCTTACTGCAAC 59.254 44.000 0.00 0.00 45.94 4.17
270 271 5.652452 TCACATAGTCTAGAGCTTACTGCAA 59.348 40.000 0.00 0.00 45.94 4.08
271 272 5.193679 TCACATAGTCTAGAGCTTACTGCA 58.806 41.667 0.00 0.00 45.94 4.41
272 273 5.759506 TCACATAGTCTAGAGCTTACTGC 57.240 43.478 0.00 0.00 43.29 4.40
273 274 8.247562 ACTTTTCACATAGTCTAGAGCTTACTG 58.752 37.037 0.00 0.00 0.00 2.74
274 275 8.356000 ACTTTTCACATAGTCTAGAGCTTACT 57.644 34.615 0.00 0.00 0.00 2.24
275 276 8.989653 AACTTTTCACATAGTCTAGAGCTTAC 57.010 34.615 0.00 0.00 0.00 2.34
276 277 9.998106 AAAACTTTTCACATAGTCTAGAGCTTA 57.002 29.630 0.00 0.00 0.00 3.09
277 278 8.910351 AAAACTTTTCACATAGTCTAGAGCTT 57.090 30.769 0.00 0.00 0.00 3.74
335 336 9.871175 GGGAAATAGTGGGTATTTTATTCCTTA 57.129 33.333 0.00 0.00 40.77 2.69
336 337 7.504574 CGGGAAATAGTGGGTATTTTATTCCTT 59.495 37.037 0.00 0.00 40.77 3.36
337 338 7.002276 CGGGAAATAGTGGGTATTTTATTCCT 58.998 38.462 0.00 0.00 40.77 3.36
338 339 6.774170 ACGGGAAATAGTGGGTATTTTATTCC 59.226 38.462 0.00 0.00 40.77 3.01
339 340 7.499895 TGACGGGAAATAGTGGGTATTTTATTC 59.500 37.037 0.00 0.00 40.77 1.75
340 341 7.348033 TGACGGGAAATAGTGGGTATTTTATT 58.652 34.615 0.00 0.00 40.77 1.40
341 342 6.902408 TGACGGGAAATAGTGGGTATTTTAT 58.098 36.000 0.00 0.00 40.77 1.40
342 343 6.310764 TGACGGGAAATAGTGGGTATTTTA 57.689 37.500 0.00 0.00 40.77 1.52
343 344 5.182169 TGACGGGAAATAGTGGGTATTTT 57.818 39.130 0.00 0.00 40.77 1.82
344 345 4.847990 TGACGGGAAATAGTGGGTATTT 57.152 40.909 0.00 0.00 42.96 1.40
345 346 4.847990 TTGACGGGAAATAGTGGGTATT 57.152 40.909 0.00 0.00 32.21 1.89
346 347 4.847990 TTTGACGGGAAATAGTGGGTAT 57.152 40.909 0.00 0.00 0.00 2.73
347 348 4.637387 TTTTGACGGGAAATAGTGGGTA 57.363 40.909 0.00 0.00 0.00 3.69
348 349 3.512219 TTTTGACGGGAAATAGTGGGT 57.488 42.857 0.00 0.00 0.00 4.51
349 350 6.518208 TTATTTTTGACGGGAAATAGTGGG 57.482 37.500 0.00 0.00 31.52 4.61
381 382 2.433970 TGCATCGATCACCTTACCATGA 59.566 45.455 0.00 0.00 0.00 3.07
387 388 3.836365 TCCAATGCATCGATCACCTTA 57.164 42.857 0.00 0.00 0.00 2.69
388 389 2.715749 TCCAATGCATCGATCACCTT 57.284 45.000 0.00 0.00 0.00 3.50
389 390 2.715749 TTCCAATGCATCGATCACCT 57.284 45.000 0.00 0.00 0.00 4.00
458 459 3.181282 GAGGTTGGGGCCCTCTTT 58.819 61.111 25.93 7.05 44.29 2.52
470 471 2.548067 CGTTGGTGTTGAGCTAGAGGTT 60.548 50.000 0.00 0.00 0.00 3.50
477 478 2.102588 AGTCTAACGTTGGTGTTGAGCT 59.897 45.455 11.99 0.00 33.32 4.09
481 482 3.985925 GGAGTAGTCTAACGTTGGTGTTG 59.014 47.826 11.99 0.00 33.32 3.33
512 513 4.245660 TCTTTCCAGTAAGCAACGATCAG 58.754 43.478 0.00 0.00 0.00 2.90
518 519 5.767816 TTTTCCTCTTTCCAGTAAGCAAC 57.232 39.130 0.00 0.00 0.00 4.17
540 545 2.098934 TGAAGACGCATGCAGTGTTTTT 59.901 40.909 19.57 6.56 42.04 1.94
567 572 1.800229 TTTTGGGAAGAGGAGCCCCC 61.800 60.000 0.00 0.00 44.03 5.40
589 598 5.109815 CGTTTGTACGTGTAGCATTACTC 57.890 43.478 0.00 0.00 42.72 2.59
603 612 6.697019 TGTAGAACCTTGTAACTCGTTTGTAC 59.303 38.462 0.00 0.00 0.00 2.90
604 613 6.804677 TGTAGAACCTTGTAACTCGTTTGTA 58.195 36.000 0.00 0.00 0.00 2.41
605 614 5.663456 TGTAGAACCTTGTAACTCGTTTGT 58.337 37.500 0.00 0.00 0.00 2.83
606 615 6.592798 TTGTAGAACCTTGTAACTCGTTTG 57.407 37.500 0.00 0.00 0.00 2.93
607 616 7.797038 ATTTGTAGAACCTTGTAACTCGTTT 57.203 32.000 0.00 0.00 0.00 3.60
608 617 7.601508 CCTATTTGTAGAACCTTGTAACTCGTT 59.398 37.037 0.00 0.00 0.00 3.85
609 618 7.095270 CCTATTTGTAGAACCTTGTAACTCGT 58.905 38.462 0.00 0.00 0.00 4.18
610 619 7.095270 ACCTATTTGTAGAACCTTGTAACTCG 58.905 38.462 0.00 0.00 0.00 4.18
611 620 8.843885 AACCTATTTGTAGAACCTTGTAACTC 57.156 34.615 0.00 0.00 0.00 3.01
641 650 3.455910 CCTCTCCACCTATTGACCAATCA 59.544 47.826 0.00 0.00 32.50 2.57
642 651 3.456277 ACCTCTCCACCTATTGACCAATC 59.544 47.826 0.00 0.00 32.50 2.67
643 652 3.200825 CACCTCTCCACCTATTGACCAAT 59.799 47.826 0.64 0.64 34.93 3.16
644 653 2.571653 CACCTCTCCACCTATTGACCAA 59.428 50.000 0.00 0.00 0.00 3.67
645 654 2.187958 CACCTCTCCACCTATTGACCA 58.812 52.381 0.00 0.00 0.00 4.02
646 655 1.486726 CCACCTCTCCACCTATTGACC 59.513 57.143 0.00 0.00 0.00 4.02
647 656 1.134371 GCCACCTCTCCACCTATTGAC 60.134 57.143 0.00 0.00 0.00 3.18
648 657 1.204146 GCCACCTCTCCACCTATTGA 58.796 55.000 0.00 0.00 0.00 2.57
649 658 0.181350 GGCCACCTCTCCACCTATTG 59.819 60.000 0.00 0.00 0.00 1.90
650 659 0.988678 GGGCCACCTCTCCACCTATT 60.989 60.000 4.39 0.00 0.00 1.73
651 660 1.384643 GGGCCACCTCTCCACCTAT 60.385 63.158 4.39 0.00 0.00 2.57
652 661 2.040606 GGGCCACCTCTCCACCTA 59.959 66.667 4.39 0.00 0.00 3.08
653 662 4.270153 TGGGCCACCTCTCCACCT 62.270 66.667 0.00 0.00 37.76 4.00
654 663 4.035102 GTGGGCCACCTCTCCACC 62.035 72.222 26.51 0.00 43.65 4.61
663 672 0.252513 ATTTTTAGGGGGTGGGCCAC 60.253 55.000 28.69 28.69 37.49 5.01
664 673 0.494095 AATTTTTAGGGGGTGGGCCA 59.506 50.000 0.00 0.00 36.17 5.36
665 674 2.553911 TAATTTTTAGGGGGTGGGCC 57.446 50.000 0.00 0.00 0.00 5.80
666 675 3.704566 CTCTTAATTTTTAGGGGGTGGGC 59.295 47.826 0.00 0.00 0.00 5.36
667 676 4.016944 TCCTCTTAATTTTTAGGGGGTGGG 60.017 45.833 0.00 0.00 32.57 4.61
668 677 5.201243 CTCCTCTTAATTTTTAGGGGGTGG 58.799 45.833 0.00 0.00 32.57 4.61
669 678 5.201243 CCTCCTCTTAATTTTTAGGGGGTG 58.799 45.833 9.43 0.00 43.77 4.61
670 679 4.232122 CCCTCCTCTTAATTTTTAGGGGGT 59.768 45.833 14.34 0.00 46.88 4.95
672 681 4.215908 GCCCTCCTCTTAATTTTTAGGGG 58.784 47.826 6.64 0.00 42.12 4.79
673 682 4.867086 TGCCCTCCTCTTAATTTTTAGGG 58.133 43.478 0.00 0.00 44.24 3.53
674 683 6.850752 TTTGCCCTCCTCTTAATTTTTAGG 57.149 37.500 0.00 0.00 0.00 2.69
677 686 9.671279 CATAAATTTGCCCTCCTCTTAATTTTT 57.329 29.630 0.00 0.00 0.00 1.94
678 687 9.045745 TCATAAATTTGCCCTCCTCTTAATTTT 57.954 29.630 0.00 0.00 0.00 1.82
679 688 8.608185 TCATAAATTTGCCCTCCTCTTAATTT 57.392 30.769 0.00 0.00 0.00 1.82
680 689 8.788238 ATCATAAATTTGCCCTCCTCTTAATT 57.212 30.769 0.00 0.00 0.00 1.40
681 690 8.645110 CAATCATAAATTTGCCCTCCTCTTAAT 58.355 33.333 0.00 0.00 0.00 1.40
682 691 7.069826 CCAATCATAAATTTGCCCTCCTCTTAA 59.930 37.037 0.00 0.00 0.00 1.85
683 692 6.550854 CCAATCATAAATTTGCCCTCCTCTTA 59.449 38.462 0.00 0.00 0.00 2.10
684 693 5.364735 CCAATCATAAATTTGCCCTCCTCTT 59.635 40.000 0.00 0.00 0.00 2.85
685 694 4.897670 CCAATCATAAATTTGCCCTCCTCT 59.102 41.667 0.00 0.00 0.00 3.69
686 695 4.651045 ACCAATCATAAATTTGCCCTCCTC 59.349 41.667 0.00 0.00 0.00 3.71
687 696 4.623863 ACCAATCATAAATTTGCCCTCCT 58.376 39.130 0.00 0.00 0.00 3.69
688 697 5.357742 AACCAATCATAAATTTGCCCTCC 57.642 39.130 0.00 0.00 0.00 4.30
689 698 7.112452 ACTAACCAATCATAAATTTGCCCTC 57.888 36.000 0.00 0.00 0.00 4.30
690 699 8.058847 TCTACTAACCAATCATAAATTTGCCCT 58.941 33.333 0.00 0.00 0.00 5.19
691 700 8.232913 TCTACTAACCAATCATAAATTTGCCC 57.767 34.615 0.00 0.00 0.00 5.36
692 701 9.683069 CATCTACTAACCAATCATAAATTTGCC 57.317 33.333 0.00 0.00 0.00 4.52
714 723 9.512588 ACACATTGACTAGAATTTTCTTCATCT 57.487 29.630 0.00 0.00 38.70 2.90
720 729 9.846248 GCAATTACACATTGACTAGAATTTTCT 57.154 29.630 0.00 0.00 41.24 2.52
721 730 8.788813 CGCAATTACACATTGACTAGAATTTTC 58.211 33.333 0.00 0.00 0.00 2.29
722 731 8.296713 ACGCAATTACACATTGACTAGAATTTT 58.703 29.630 0.00 0.00 0.00 1.82
723 732 7.750458 CACGCAATTACACATTGACTAGAATTT 59.250 33.333 0.00 0.00 0.00 1.82
724 733 7.094805 ACACGCAATTACACATTGACTAGAATT 60.095 33.333 0.00 0.00 0.00 2.17
725 734 6.371548 ACACGCAATTACACATTGACTAGAAT 59.628 34.615 0.00 0.00 0.00 2.40
726 735 5.699001 ACACGCAATTACACATTGACTAGAA 59.301 36.000 0.00 0.00 0.00 2.10
727 736 5.234752 ACACGCAATTACACATTGACTAGA 58.765 37.500 0.00 0.00 0.00 2.43
728 737 5.530519 ACACGCAATTACACATTGACTAG 57.469 39.130 0.00 0.00 0.00 2.57
729 738 6.647481 AGTTACACGCAATTACACATTGACTA 59.353 34.615 0.00 0.00 0.00 2.59
730 739 5.468746 AGTTACACGCAATTACACATTGACT 59.531 36.000 0.00 0.00 0.00 3.41
731 740 5.685841 AGTTACACGCAATTACACATTGAC 58.314 37.500 0.00 0.00 0.00 3.18
732 741 5.699001 AGAGTTACACGCAATTACACATTGA 59.301 36.000 0.00 0.00 0.00 2.57
733 742 5.927030 AGAGTTACACGCAATTACACATTG 58.073 37.500 0.00 0.00 0.00 2.82
734 743 6.554334 AAGAGTTACACGCAATTACACATT 57.446 33.333 0.00 0.00 0.00 2.71
735 744 6.017440 ACAAAGAGTTACACGCAATTACACAT 60.017 34.615 0.00 0.00 0.00 3.21
736 745 5.294799 ACAAAGAGTTACACGCAATTACACA 59.705 36.000 0.00 0.00 0.00 3.72
737 746 5.744490 ACAAAGAGTTACACGCAATTACAC 58.256 37.500 0.00 0.00 0.00 2.90
738 747 5.994887 ACAAAGAGTTACACGCAATTACA 57.005 34.783 0.00 0.00 0.00 2.41
739 748 7.515643 ACATACAAAGAGTTACACGCAATTAC 58.484 34.615 0.00 0.00 0.00 1.89
740 749 7.661127 ACATACAAAGAGTTACACGCAATTA 57.339 32.000 0.00 0.00 0.00 1.40
741 750 6.554334 ACATACAAAGAGTTACACGCAATT 57.446 33.333 0.00 0.00 0.00 2.32
742 751 6.554334 AACATACAAAGAGTTACACGCAAT 57.446 33.333 0.00 0.00 0.00 3.56
743 752 5.994887 AACATACAAAGAGTTACACGCAA 57.005 34.783 0.00 0.00 0.00 4.85
744 753 5.524281 TCAAACATACAAAGAGTTACACGCA 59.476 36.000 0.00 0.00 0.00 5.24
745 754 5.844396 GTCAAACATACAAAGAGTTACACGC 59.156 40.000 0.00 0.00 0.00 5.34
746 755 6.939627 TGTCAAACATACAAAGAGTTACACG 58.060 36.000 0.00 0.00 0.00 4.49
773 782 7.704472 CGTGGGCAATAATGTTAAACATACAAT 59.296 33.333 0.00 0.00 37.97 2.71
774 783 7.030165 CGTGGGCAATAATGTTAAACATACAA 58.970 34.615 0.00 0.00 37.97 2.41
775 784 6.374613 TCGTGGGCAATAATGTTAAACATACA 59.625 34.615 0.00 0.00 37.97 2.29
776 785 6.787225 TCGTGGGCAATAATGTTAAACATAC 58.213 36.000 0.00 0.00 37.97 2.39
777 786 7.251994 GTTCGTGGGCAATAATGTTAAACATA 58.748 34.615 0.00 0.00 37.97 2.29
778 787 5.906113 TCGTGGGCAATAATGTTAAACAT 57.094 34.783 0.00 0.00 41.31 2.71
779 788 5.462405 GTTCGTGGGCAATAATGTTAAACA 58.538 37.500 0.00 0.00 0.00 2.83
780 789 4.860352 GGTTCGTGGGCAATAATGTTAAAC 59.140 41.667 0.00 0.00 0.00 2.01
781 790 4.767928 AGGTTCGTGGGCAATAATGTTAAA 59.232 37.500 0.00 0.00 0.00 1.52
782 791 4.337145 AGGTTCGTGGGCAATAATGTTAA 58.663 39.130 0.00 0.00 0.00 2.01
783 792 3.958018 AGGTTCGTGGGCAATAATGTTA 58.042 40.909 0.00 0.00 0.00 2.41
784 793 2.802719 AGGTTCGTGGGCAATAATGTT 58.197 42.857 0.00 0.00 0.00 2.71
785 794 2.507407 AGGTTCGTGGGCAATAATGT 57.493 45.000 0.00 0.00 0.00 2.71
786 795 3.866883 AAAGGTTCGTGGGCAATAATG 57.133 42.857 0.00 0.00 0.00 1.90
787 796 4.882842 AAAAAGGTTCGTGGGCAATAAT 57.117 36.364 0.00 0.00 0.00 1.28
810 819 9.978044 GGAGATATATACGAGTTACAAGGTTTT 57.022 33.333 0.00 0.00 0.00 2.43
811 820 9.139734 TGGAGATATATACGAGTTACAAGGTTT 57.860 33.333 0.00 0.00 0.00 3.27
812 821 8.701908 TGGAGATATATACGAGTTACAAGGTT 57.298 34.615 0.00 0.00 0.00 3.50
813 822 8.162085 TCTGGAGATATATACGAGTTACAAGGT 58.838 37.037 0.00 0.00 0.00 3.50
814 823 8.452534 GTCTGGAGATATATACGAGTTACAAGG 58.547 40.741 0.00 0.00 0.00 3.61
815 824 9.221933 AGTCTGGAGATATATACGAGTTACAAG 57.778 37.037 0.00 0.00 0.00 3.16
816 825 9.000486 CAGTCTGGAGATATATACGAGTTACAA 58.000 37.037 0.00 0.00 0.00 2.41
817 826 7.119407 GCAGTCTGGAGATATATACGAGTTACA 59.881 40.741 1.14 0.00 0.00 2.41
818 827 7.334921 AGCAGTCTGGAGATATATACGAGTTAC 59.665 40.741 1.14 0.00 0.00 2.50
819 828 7.395617 AGCAGTCTGGAGATATATACGAGTTA 58.604 38.462 1.14 0.00 0.00 2.24
820 829 6.242396 AGCAGTCTGGAGATATATACGAGTT 58.758 40.000 1.14 0.00 0.00 3.01
821 830 5.811190 AGCAGTCTGGAGATATATACGAGT 58.189 41.667 1.14 0.00 0.00 4.18
822 831 5.295787 GGAGCAGTCTGGAGATATATACGAG 59.704 48.000 1.14 0.00 0.00 4.18
823 832 5.186942 GGAGCAGTCTGGAGATATATACGA 58.813 45.833 1.14 0.00 0.00 3.43
824 833 4.034626 CGGAGCAGTCTGGAGATATATACG 59.965 50.000 1.14 0.00 0.00 3.06
825 834 5.065474 GTCGGAGCAGTCTGGAGATATATAC 59.935 48.000 1.14 0.00 0.00 1.47
826 835 5.186942 GTCGGAGCAGTCTGGAGATATATA 58.813 45.833 1.14 0.00 0.00 0.86
1164 1230 3.016031 TGACAACAATCAAGCTGTGTGT 58.984 40.909 0.00 0.00 0.00 3.72
1168 1234 2.624364 TGCATGACAACAATCAAGCTGT 59.376 40.909 0.00 0.00 42.44 4.40
1169 1235 3.291809 TGCATGACAACAATCAAGCTG 57.708 42.857 0.00 0.00 42.44 4.24
1170 1236 4.703575 AGTATGCATGACAACAATCAAGCT 59.296 37.500 10.16 0.00 42.44 3.74
1171 1237 4.990257 AGTATGCATGACAACAATCAAGC 58.010 39.130 10.16 0.00 42.33 4.01
1172 1238 7.067728 CGATAGTATGCATGACAACAATCAAG 58.932 38.462 10.16 0.00 30.82 3.02
1194 1260 2.030185 CCGAGAAATATCCGTGGACGAT 60.030 50.000 0.00 0.00 43.02 3.73
1199 1265 2.882927 TCACCGAGAAATATCCGTGG 57.117 50.000 0.00 0.00 0.00 4.94
1202 1270 3.717707 ACACATCACCGAGAAATATCCG 58.282 45.455 0.00 0.00 0.00 4.18
1206 1274 5.127031 TCATCAGACACATCACCGAGAAATA 59.873 40.000 0.00 0.00 0.00 1.40
1212 1280 3.893326 ATTCATCAGACACATCACCGA 57.107 42.857 0.00 0.00 0.00 4.69
1218 1286 5.771666 ACAGAACCAAATTCATCAGACACAT 59.228 36.000 0.00 0.00 40.09 3.21
1224 1292 6.199531 CACACAAACAGAACCAAATTCATCAG 59.800 38.462 0.00 0.00 40.09 2.90
1228 1296 4.753233 CCACACAAACAGAACCAAATTCA 58.247 39.130 0.00 0.00 40.09 2.57
1247 1323 2.359900 CTTGTACATCTTCCCTGCCAC 58.640 52.381 0.00 0.00 0.00 5.01
1506 1582 5.107143 GCTTGTTGAGAAGAGAACAGCTTAG 60.107 44.000 0.00 0.00 33.73 2.18
1559 1635 2.289547 GGCAACGCAGTGTAGAGAAAAA 59.710 45.455 0.00 0.00 45.00 1.94
1560 1636 1.871039 GGCAACGCAGTGTAGAGAAAA 59.129 47.619 0.00 0.00 45.00 2.29
1561 1637 1.070134 AGGCAACGCAGTGTAGAGAAA 59.930 47.619 0.00 0.00 45.00 2.52
1562 1638 0.679505 AGGCAACGCAGTGTAGAGAA 59.320 50.000 0.00 0.00 45.00 2.87
1563 1639 0.679505 AAGGCAACGCAGTGTAGAGA 59.320 50.000 0.00 0.00 45.00 3.10
1564 1640 2.094700 TCTAAGGCAACGCAGTGTAGAG 60.095 50.000 0.00 0.00 45.00 2.43
1565 1641 1.890489 TCTAAGGCAACGCAGTGTAGA 59.110 47.619 0.00 0.00 45.00 2.59
1566 1642 2.363788 TCTAAGGCAACGCAGTGTAG 57.636 50.000 0.00 0.00 45.00 2.74
1567 1643 3.328382 AATCTAAGGCAACGCAGTGTA 57.672 42.857 0.00 0.00 45.00 2.90
1568 1644 2.185004 AATCTAAGGCAACGCAGTGT 57.815 45.000 0.00 0.00 45.00 3.55
1591 1667 4.499183 AGGTGAACTTGAGCTCGAAATAG 58.501 43.478 9.64 3.88 0.00 1.73
1593 1669 3.409026 AGGTGAACTTGAGCTCGAAAT 57.591 42.857 9.64 0.00 0.00 2.17
1601 1677 2.615869 GCTGAGCTAGGTGAACTTGAG 58.384 52.381 0.00 0.00 0.00 3.02
1629 1739 2.223829 CCCAATTTGTGCAACGGTAACA 60.224 45.455 0.00 0.00 42.39 2.41
1635 1745 0.945265 CTGGCCCAATTTGTGCAACG 60.945 55.000 0.00 0.00 42.39 4.10
1649 1759 0.322816 TGATGGCTCTGAAACTGGCC 60.323 55.000 0.00 0.00 44.31 5.36
1675 1785 1.336440 TGCTTCTAGCTCTGCGATCTC 59.664 52.381 0.00 0.00 42.97 2.75
1726 1836 5.185828 GGTAGGCTCAAGAACATCCAAAATT 59.814 40.000 0.00 0.00 0.00 1.82
1783 1894 0.100682 TGCAGATAACTCTCGCCGAC 59.899 55.000 0.00 0.00 0.00 4.79
1851 1962 0.520404 GCTGCAGGACAAGACACATG 59.480 55.000 17.12 0.00 0.00 3.21
2109 2226 4.803426 CAGGTCCAGCCGACGAGC 62.803 72.222 0.00 0.00 42.99 5.03
2203 2320 3.382832 CTCCTCGGGTTGCTCGGT 61.383 66.667 0.00 0.00 0.00 4.69
2291 2412 3.364366 GCATGCAGGCGCTAATTAGTTAG 60.364 47.826 14.21 7.24 40.25 2.34
2304 2425 3.044809 CATGTTCTTGCATGCAGGC 57.955 52.632 23.98 18.05 39.59 4.85
2317 2438 8.623903 CCTAATATGTACTGCATGAAACATGTT 58.376 33.333 4.92 4.92 38.47 2.71
2319 2440 7.445096 TCCCTAATATGTACTGCATGAAACATG 59.555 37.037 0.00 7.29 38.47 3.21
2325 2449 6.481976 CGTTTTCCCTAATATGTACTGCATGA 59.518 38.462 0.00 0.00 38.47 3.07
2326 2450 6.293407 CCGTTTTCCCTAATATGTACTGCATG 60.293 42.308 0.00 0.00 38.47 4.06
2381 2505 3.516615 CTTGGAATCGGACTCTTGACTC 58.483 50.000 0.00 0.00 0.00 3.36
2382 2506 2.354203 GCTTGGAATCGGACTCTTGACT 60.354 50.000 0.00 0.00 0.00 3.41
2383 2507 2.003301 GCTTGGAATCGGACTCTTGAC 58.997 52.381 0.00 0.00 0.00 3.18
2384 2508 1.066143 GGCTTGGAATCGGACTCTTGA 60.066 52.381 0.00 0.00 0.00 3.02
2385 2509 1.373570 GGCTTGGAATCGGACTCTTG 58.626 55.000 0.00 0.00 0.00 3.02
2386 2510 0.108138 CGGCTTGGAATCGGACTCTT 60.108 55.000 0.00 0.00 0.00 2.85
2432 2912 4.562425 ACACCACACCGTGCTGGG 62.562 66.667 18.52 11.96 44.64 4.45
2451 2931 6.182634 CACGGTATGTCGTTATCACAAAATC 58.817 40.000 0.00 0.00 41.86 2.17
2453 2933 4.143073 GCACGGTATGTCGTTATCACAAAA 60.143 41.667 0.00 0.00 41.86 2.44
2454 2934 3.368539 GCACGGTATGTCGTTATCACAAA 59.631 43.478 0.00 0.00 41.86 2.83
2480 2960 4.039730 TCTGAGGCTGGCATCTACTTATTC 59.960 45.833 8.63 0.00 0.00 1.75
2483 2963 2.961741 CTCTGAGGCTGGCATCTACTTA 59.038 50.000 8.63 0.00 0.00 2.24
2484 2964 1.761784 CTCTGAGGCTGGCATCTACTT 59.238 52.381 8.63 0.00 0.00 2.24
2487 2967 0.688749 TGCTCTGAGGCTGGCATCTA 60.689 55.000 6.83 0.00 0.00 1.98
2488 2968 1.559965 TTGCTCTGAGGCTGGCATCT 61.560 55.000 6.83 0.00 34.59 2.90
2489 2969 1.077930 TTGCTCTGAGGCTGGCATC 60.078 57.895 6.83 0.00 34.59 3.91
2504 2986 2.526077 GTAATTGGTTTAGCCGCTTGC 58.474 47.619 0.00 0.00 41.21 4.01
2505 2987 2.490115 TGGTAATTGGTTTAGCCGCTTG 59.510 45.455 0.00 0.00 41.21 4.01
2506 2988 2.797786 TGGTAATTGGTTTAGCCGCTT 58.202 42.857 0.00 0.00 41.21 4.68
2507 2989 2.500392 TGGTAATTGGTTTAGCCGCT 57.500 45.000 0.00 0.00 41.21 5.52
2508 2990 3.119280 ACATTGGTAATTGGTTTAGCCGC 60.119 43.478 0.00 0.00 41.21 6.53
2510 2992 5.914898 AGACATTGGTAATTGGTTTAGCC 57.085 39.130 0.00 0.00 37.47 3.93
2556 3045 3.209812 CGGAGGATCGAGTCGCCA 61.210 66.667 7.92 0.00 34.37 5.69
2659 3148 4.785453 GAGCCAGGGGAACTGCGG 62.785 72.222 0.00 0.00 46.14 5.69
2670 3159 3.458163 TCCGGTAAGGCGAGCCAG 61.458 66.667 17.18 2.19 40.77 4.85
2798 3287 3.474904 CGCCGTCGATGCGTTCAA 61.475 61.111 20.12 0.00 46.59 2.69
2884 3373 4.452733 GGACGGCTCCGACAAGGG 62.453 72.222 15.95 0.00 42.83 3.95
2902 3391 0.036952 CACACGACCAGCTTCCTGAT 60.037 55.000 0.00 0.00 41.77 2.90
2949 3438 0.613260 TGTGAATCCCTTCCTCACCG 59.387 55.000 0.00 0.00 38.97 4.94
3074 3567 1.376037 GAGTCGGCCTTTGTCCTGG 60.376 63.158 0.00 0.00 0.00 4.45
3075 3568 1.376037 GGAGTCGGCCTTTGTCCTG 60.376 63.158 0.00 0.00 0.00 3.86
3078 3571 0.108567 GAGAGGAGTCGGCCTTTGTC 60.109 60.000 0.00 0.00 38.73 3.18
3079 3572 1.545706 GGAGAGGAGTCGGCCTTTGT 61.546 60.000 0.00 0.00 38.73 2.83
3081 3574 2.352032 CGGAGAGGAGTCGGCCTTT 61.352 63.158 0.00 0.00 38.73 3.11
3082 3575 2.756283 CGGAGAGGAGTCGGCCTT 60.756 66.667 0.00 0.00 38.73 4.35
3083 3576 3.999297 GACGGAGAGGAGTCGGCCT 62.999 68.421 0.00 0.00 42.17 5.19
3085 3578 2.438795 AGACGGAGAGGAGTCGGC 60.439 66.667 0.00 0.00 41.86 5.54
3149 3642 1.065701 CCGACCTCCATAAGTCTGTCG 59.934 57.143 0.00 0.00 43.64 4.35
3152 3645 1.115467 AGCCGACCTCCATAAGTCTG 58.885 55.000 0.00 0.00 0.00 3.51
3162 3655 0.108756 GACTTGGTGTAGCCGACCTC 60.109 60.000 0.00 0.00 41.21 3.85
3175 3677 2.106074 TATTGCAGCGGCGACTTGG 61.106 57.895 12.98 0.00 45.35 3.61
3177 3679 2.106683 GGTATTGCAGCGGCGACTT 61.107 57.895 12.98 0.00 45.35 3.01
3225 3727 2.243810 GTTAGGATCCTCTCTGCGGAT 58.756 52.381 20.22 0.00 43.77 4.18
3227 3729 1.403814 TGTTAGGATCCTCTCTGCGG 58.596 55.000 20.22 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.