Multiple sequence alignment - TraesCS2D01G370100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G370100 chr2D 100.000 3357 0 0 1 3357 474660093 474663449 0.000000e+00 6200.0
1 TraesCS2D01G370100 chr2D 92.683 164 10 2 2515 2678 476697541 476697702 5.600000e-58 235.0
2 TraesCS2D01G370100 chr2D 91.617 167 7 4 2514 2676 35170353 35170516 1.210000e-54 224.0
3 TraesCS2D01G370100 chr2D 80.541 185 32 4 3173 3357 9256653 9256473 4.520000e-29 139.0
4 TraesCS2D01G370100 chr2D 80.952 126 22 2 2889 3013 393215286 393215162 7.670000e-17 99.0
5 TraesCS2D01G370100 chr2A 91.023 1749 113 20 779 2505 617094682 617096408 0.000000e+00 2320.0
6 TraesCS2D01G370100 chr2A 86.494 696 65 15 2678 3357 617096406 617097088 0.000000e+00 737.0
7 TraesCS2D01G370100 chr2B 93.556 1350 76 7 1165 2505 555521541 555522888 0.000000e+00 2001.0
8 TraesCS2D01G370100 chr2B 81.242 789 95 35 420 1172 555520716 555521487 3.730000e-164 588.0
9 TraesCS2D01G370100 chr5B 92.121 165 13 0 2518 2682 485445862 485445698 2.010000e-57 233.0
10 TraesCS2D01G370100 chr3D 92.683 164 9 3 2515 2677 582171327 582171488 2.010000e-57 233.0
11 TraesCS2D01G370100 chr6B 91.228 171 9 3 2515 2680 706113267 706113436 9.370000e-56 228.0
12 TraesCS2D01G370100 chr4A 88.947 190 13 4 2509 2692 13582718 13582531 9.370000e-56 228.0
13 TraesCS2D01G370100 chr7B 90.533 169 14 1 2514 2680 104697623 104697455 4.360000e-54 222.0
14 TraesCS2D01G370100 chr7B 77.181 149 28 6 3196 3342 443325932 443326076 7.720000e-12 82.4
15 TraesCS2D01G370100 chr6D 90.476 168 11 2 2515 2678 453197174 453197340 2.030000e-52 217.0
16 TraesCS2D01G370100 chr1D 89.773 176 8 6 2503 2678 112352023 112352188 2.030000e-52 217.0
17 TraesCS2D01G370100 chr1D 76.923 182 35 7 3178 3356 481437081 481437258 2.760000e-16 97.1
18 TraesCS2D01G370100 chr1A 78.414 227 37 7 3079 3297 91479196 91479418 1.620000e-28 137.0
19 TraesCS2D01G370100 chr4B 82.270 141 20 4 3 143 594844443 594844578 2.120000e-22 117.0
20 TraesCS2D01G370100 chr4B 75.000 244 48 9 3079 3318 667890761 667890995 2.130000e-17 100.0
21 TraesCS2D01G370100 chr7D 81.102 127 20 4 3169 3293 512735618 512735742 7.670000e-17 99.0
22 TraesCS2D01G370100 chr7D 77.181 149 28 6 3196 3342 425729773 425729917 7.720000e-12 82.4
23 TraesCS2D01G370100 chr5D 79.528 127 23 3 3173 3298 438468658 438468782 1.660000e-13 87.9
24 TraesCS2D01G370100 chr7A 78.182 110 17 7 609 716 529253890 529253994 2.800000e-06 63.9
25 TraesCS2D01G370100 chr5A 80.488 82 16 0 449 530 280727489 280727570 2.800000e-06 63.9
26 TraesCS2D01G370100 chrUn 95.000 40 1 1 609 647 29761176 29761137 1.010000e-05 62.1
27 TraesCS2D01G370100 chr4D 83.607 61 9 1 588 647 8924409 8924469 4.680000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G370100 chr2D 474660093 474663449 3356 False 6200.0 6200 100.0000 1 3357 1 chr2D.!!$F2 3356
1 TraesCS2D01G370100 chr2A 617094682 617097088 2406 False 1528.5 2320 88.7585 779 3357 2 chr2A.!!$F1 2578
2 TraesCS2D01G370100 chr2B 555520716 555522888 2172 False 1294.5 2001 87.3990 420 2505 2 chr2B.!!$F1 2085

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.033601 ACCCTTTCACTTGTGTGGCA 60.034 50.0 0.46 0.0 43.94 4.92 F
233 234 0.036010 CGGGCAGGTTGTTGAGATCT 60.036 55.0 0.00 0.0 0.00 2.75 F
1879 1980 0.105453 GGGAGCTCATCAGGGTCCTA 60.105 60.0 17.19 0.0 46.78 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2128 0.392706 TGGCATTATCGACGGCATCT 59.607 50.0 0.0 0.00 0.00 2.90 R
2027 2133 2.154854 ACAGATGGCATTATCGACGG 57.845 50.0 0.0 0.00 32.33 4.79 R
2859 2975 0.464554 GAAGGATGCTACCCTGGTGC 60.465 60.0 0.0 1.72 33.55 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.757897 CCTATTTCAGCAAAAGATACCACA 57.242 37.500 0.00 0.00 0.00 4.17
24 25 7.338800 CCTATTTCAGCAAAAGATACCACAT 57.661 36.000 0.00 0.00 0.00 3.21
25 26 7.198390 CCTATTTCAGCAAAAGATACCACATG 58.802 38.462 0.00 0.00 0.00 3.21
26 27 6.839124 ATTTCAGCAAAAGATACCACATGA 57.161 33.333 0.00 0.00 0.00 3.07
27 28 5.885230 TTCAGCAAAAGATACCACATGAG 57.115 39.130 0.00 0.00 0.00 2.90
28 29 5.164620 TCAGCAAAAGATACCACATGAGA 57.835 39.130 0.00 0.00 0.00 3.27
29 30 5.559770 TCAGCAAAAGATACCACATGAGAA 58.440 37.500 0.00 0.00 0.00 2.87
30 31 6.182627 TCAGCAAAAGATACCACATGAGAAT 58.817 36.000 0.00 0.00 0.00 2.40
31 32 6.660521 TCAGCAAAAGATACCACATGAGAATT 59.339 34.615 0.00 0.00 0.00 2.17
32 33 7.828717 TCAGCAAAAGATACCACATGAGAATTA 59.171 33.333 0.00 0.00 0.00 1.40
33 34 8.627403 CAGCAAAAGATACCACATGAGAATTAT 58.373 33.333 0.00 0.00 0.00 1.28
34 35 9.851686 AGCAAAAGATACCACATGAGAATTATA 57.148 29.630 0.00 0.00 0.00 0.98
41 42 9.950496 GATACCACATGAGAATTATATTGAGGT 57.050 33.333 0.00 8.28 0.00 3.85
42 43 9.730705 ATACCACATGAGAATTATATTGAGGTG 57.269 33.333 0.00 0.00 0.00 4.00
43 44 6.488006 ACCACATGAGAATTATATTGAGGTGC 59.512 38.462 0.00 0.00 0.00 5.01
44 45 6.713903 CCACATGAGAATTATATTGAGGTGCT 59.286 38.462 0.00 0.00 0.00 4.40
45 46 7.230108 CCACATGAGAATTATATTGAGGTGCTT 59.770 37.037 0.00 0.00 0.00 3.91
46 47 8.627403 CACATGAGAATTATATTGAGGTGCTTT 58.373 33.333 0.00 0.00 0.00 3.51
47 48 9.851686 ACATGAGAATTATATTGAGGTGCTTTA 57.148 29.630 0.00 0.00 0.00 1.85
49 50 9.851686 ATGAGAATTATATTGAGGTGCTTTACA 57.148 29.630 0.00 0.00 0.00 2.41
50 51 9.851686 TGAGAATTATATTGAGGTGCTTTACAT 57.148 29.630 0.00 0.00 0.00 2.29
56 57 3.070476 TGAGGTGCTTTACATCATGCA 57.930 42.857 0.00 0.00 44.41 3.96
57 58 3.419943 TGAGGTGCTTTACATCATGCAA 58.580 40.909 0.00 0.00 44.41 4.08
58 59 3.191162 TGAGGTGCTTTACATCATGCAAC 59.809 43.478 0.00 0.00 44.41 4.17
59 60 3.156293 AGGTGCTTTACATCATGCAACA 58.844 40.909 4.69 0.00 44.64 3.33
60 61 3.573538 AGGTGCTTTACATCATGCAACAA 59.426 39.130 4.69 0.00 44.64 2.83
61 62 4.221262 AGGTGCTTTACATCATGCAACAAT 59.779 37.500 4.69 0.00 44.64 2.71
62 63 4.931002 GGTGCTTTACATCATGCAACAATT 59.069 37.500 0.00 0.00 42.11 2.32
63 64 5.163933 GGTGCTTTACATCATGCAACAATTG 60.164 40.000 3.24 3.24 42.11 2.32
89 90 4.391405 GCATTTGGCAATTAGGCTTAGT 57.609 40.909 0.00 0.00 44.55 2.24
90 91 5.514274 GCATTTGGCAATTAGGCTTAGTA 57.486 39.130 0.00 0.00 44.55 1.82
91 92 5.523369 GCATTTGGCAATTAGGCTTAGTAG 58.477 41.667 0.00 0.00 44.55 2.57
92 93 5.299279 GCATTTGGCAATTAGGCTTAGTAGA 59.701 40.000 0.00 0.00 44.55 2.59
93 94 6.015940 GCATTTGGCAATTAGGCTTAGTAGAT 60.016 38.462 0.00 0.00 44.55 1.98
94 95 7.470563 GCATTTGGCAATTAGGCTTAGTAGATT 60.471 37.037 0.00 0.00 44.55 2.40
95 96 6.942532 TTGGCAATTAGGCTTAGTAGATTG 57.057 37.500 0.00 0.00 44.55 2.67
96 97 6.247229 TGGCAATTAGGCTTAGTAGATTGA 57.753 37.500 0.00 0.00 44.55 2.57
97 98 6.841601 TGGCAATTAGGCTTAGTAGATTGAT 58.158 36.000 0.00 0.00 44.55 2.57
98 99 6.712095 TGGCAATTAGGCTTAGTAGATTGATG 59.288 38.462 0.00 0.00 44.55 3.07
99 100 6.712547 GGCAATTAGGCTTAGTAGATTGATGT 59.287 38.462 0.00 0.00 40.24 3.06
100 101 7.229506 GGCAATTAGGCTTAGTAGATTGATGTT 59.770 37.037 0.00 0.00 40.24 2.71
101 102 8.624776 GCAATTAGGCTTAGTAGATTGATGTTT 58.375 33.333 0.00 0.00 0.00 2.83
103 104 8.594881 ATTAGGCTTAGTAGATTGATGTTTCG 57.405 34.615 0.00 0.00 0.00 3.46
104 105 6.222038 AGGCTTAGTAGATTGATGTTTCGA 57.778 37.500 0.00 0.00 0.00 3.71
105 106 6.276847 AGGCTTAGTAGATTGATGTTTCGAG 58.723 40.000 0.00 0.00 0.00 4.04
106 107 5.050702 GGCTTAGTAGATTGATGTTTCGAGC 60.051 44.000 0.00 0.00 0.00 5.03
107 108 5.050702 GCTTAGTAGATTGATGTTTCGAGCC 60.051 44.000 0.00 0.00 0.00 4.70
108 109 4.744795 AGTAGATTGATGTTTCGAGCCT 57.255 40.909 0.00 0.00 0.00 4.58
109 110 5.854010 AGTAGATTGATGTTTCGAGCCTA 57.146 39.130 0.00 0.00 0.00 3.93
110 111 5.593010 AGTAGATTGATGTTTCGAGCCTAC 58.407 41.667 0.00 0.00 31.70 3.18
111 112 3.798202 AGATTGATGTTTCGAGCCTACC 58.202 45.455 0.00 0.00 0.00 3.18
112 113 2.396590 TTGATGTTTCGAGCCTACCC 57.603 50.000 0.00 0.00 0.00 3.69
113 114 1.568504 TGATGTTTCGAGCCTACCCT 58.431 50.000 0.00 0.00 0.00 4.34
114 115 1.480954 TGATGTTTCGAGCCTACCCTC 59.519 52.381 0.00 0.00 0.00 4.30
115 116 0.831307 ATGTTTCGAGCCTACCCTCC 59.169 55.000 0.00 0.00 0.00 4.30
116 117 0.543410 TGTTTCGAGCCTACCCTCCA 60.543 55.000 0.00 0.00 0.00 3.86
117 118 0.831307 GTTTCGAGCCTACCCTCCAT 59.169 55.000 0.00 0.00 0.00 3.41
118 119 1.209747 GTTTCGAGCCTACCCTCCATT 59.790 52.381 0.00 0.00 0.00 3.16
119 120 2.433239 GTTTCGAGCCTACCCTCCATTA 59.567 50.000 0.00 0.00 0.00 1.90
120 121 2.696526 TCGAGCCTACCCTCCATTAT 57.303 50.000 0.00 0.00 0.00 1.28
121 122 2.526432 TCGAGCCTACCCTCCATTATC 58.474 52.381 0.00 0.00 0.00 1.75
122 123 2.158370 TCGAGCCTACCCTCCATTATCA 60.158 50.000 0.00 0.00 0.00 2.15
123 124 2.834549 CGAGCCTACCCTCCATTATCAT 59.165 50.000 0.00 0.00 0.00 2.45
124 125 3.368843 CGAGCCTACCCTCCATTATCATG 60.369 52.174 0.00 0.00 0.00 3.07
125 126 2.307098 AGCCTACCCTCCATTATCATGC 59.693 50.000 0.00 0.00 0.00 4.06
126 127 2.307098 GCCTACCCTCCATTATCATGCT 59.693 50.000 0.00 0.00 0.00 3.79
127 128 3.519510 GCCTACCCTCCATTATCATGCTA 59.480 47.826 0.00 0.00 0.00 3.49
128 129 4.383552 GCCTACCCTCCATTATCATGCTAG 60.384 50.000 0.00 0.00 0.00 3.42
129 130 5.026121 CCTACCCTCCATTATCATGCTAGA 58.974 45.833 0.00 0.00 0.00 2.43
130 131 5.664908 CCTACCCTCCATTATCATGCTAGAT 59.335 44.000 0.00 0.00 0.00 1.98
131 132 6.157645 CCTACCCTCCATTATCATGCTAGATT 59.842 42.308 0.00 0.00 0.00 2.40
132 133 6.059787 ACCCTCCATTATCATGCTAGATTC 57.940 41.667 0.00 0.00 0.00 2.52
133 134 5.114780 CCCTCCATTATCATGCTAGATTCG 58.885 45.833 0.00 0.00 0.00 3.34
134 135 4.569966 CCTCCATTATCATGCTAGATTCGC 59.430 45.833 0.00 0.00 0.00 4.70
135 136 4.507710 TCCATTATCATGCTAGATTCGCC 58.492 43.478 0.00 0.00 0.00 5.54
136 137 4.020307 TCCATTATCATGCTAGATTCGCCA 60.020 41.667 0.00 0.00 0.00 5.69
137 138 4.093998 CCATTATCATGCTAGATTCGCCAC 59.906 45.833 0.00 0.00 0.00 5.01
138 139 4.607293 TTATCATGCTAGATTCGCCACT 57.393 40.909 0.00 0.00 0.00 4.00
139 140 2.229675 TCATGCTAGATTCGCCACTG 57.770 50.000 0.00 0.00 0.00 3.66
140 141 0.585357 CATGCTAGATTCGCCACTGC 59.415 55.000 0.00 0.00 0.00 4.40
141 142 0.467384 ATGCTAGATTCGCCACTGCT 59.533 50.000 0.00 0.00 34.43 4.24
142 143 0.250234 TGCTAGATTCGCCACTGCTT 59.750 50.000 0.00 0.00 34.43 3.91
143 144 0.654683 GCTAGATTCGCCACTGCTTG 59.345 55.000 0.00 0.00 34.43 4.01
144 145 2.009042 GCTAGATTCGCCACTGCTTGT 61.009 52.381 0.00 0.00 34.43 3.16
145 146 2.350522 CTAGATTCGCCACTGCTTGTT 58.649 47.619 0.00 0.00 34.43 2.83
146 147 0.877071 AGATTCGCCACTGCTTGTTG 59.123 50.000 0.00 0.00 34.43 3.33
147 148 0.874390 GATTCGCCACTGCTTGTTGA 59.126 50.000 0.00 0.00 34.43 3.18
148 149 1.470098 GATTCGCCACTGCTTGTTGAT 59.530 47.619 0.00 0.00 34.43 2.57
149 150 0.592637 TTCGCCACTGCTTGTTGATG 59.407 50.000 0.00 0.00 34.43 3.07
150 151 0.534877 TCGCCACTGCTTGTTGATGT 60.535 50.000 0.00 0.00 34.43 3.06
151 152 0.110056 CGCCACTGCTTGTTGATGTC 60.110 55.000 0.00 0.00 34.43 3.06
152 153 1.242076 GCCACTGCTTGTTGATGTCT 58.758 50.000 0.00 0.00 33.53 3.41
153 154 1.068748 GCCACTGCTTGTTGATGTCTG 60.069 52.381 0.00 0.00 33.53 3.51
154 155 1.538512 CCACTGCTTGTTGATGTCTGG 59.461 52.381 0.00 0.00 0.00 3.86
155 156 1.068748 CACTGCTTGTTGATGTCTGGC 60.069 52.381 0.00 0.00 0.00 4.85
156 157 0.167470 CTGCTTGTTGATGTCTGGCG 59.833 55.000 0.00 0.00 0.00 5.69
157 158 0.250252 TGCTTGTTGATGTCTGGCGA 60.250 50.000 0.00 0.00 0.00 5.54
158 159 0.166814 GCTTGTTGATGTCTGGCGAC 59.833 55.000 0.00 3.11 40.64 5.19
159 160 1.800805 CTTGTTGATGTCTGGCGACT 58.199 50.000 10.03 0.00 40.86 4.18
160 161 1.462283 CTTGTTGATGTCTGGCGACTG 59.538 52.381 10.03 0.00 40.86 3.51
161 162 0.320683 TGTTGATGTCTGGCGACTGG 60.321 55.000 10.03 0.00 40.86 4.00
162 163 1.375908 TTGATGTCTGGCGACTGGC 60.376 57.895 10.03 0.00 40.86 4.85
163 164 2.887568 GATGTCTGGCGACTGGCG 60.888 66.667 0.00 0.00 44.92 5.69
164 165 3.649277 GATGTCTGGCGACTGGCGT 62.649 63.158 4.21 0.00 44.92 5.68
165 166 3.240134 ATGTCTGGCGACTGGCGTT 62.240 57.895 4.21 0.00 44.92 4.84
166 167 2.665185 GTCTGGCGACTGGCGTTT 60.665 61.111 4.21 0.00 44.92 3.60
167 168 2.664851 TCTGGCGACTGGCGTTTG 60.665 61.111 4.21 0.00 44.92 2.93
168 169 3.726517 CTGGCGACTGGCGTTTGG 61.727 66.667 4.21 0.00 44.92 3.28
169 170 4.243008 TGGCGACTGGCGTTTGGA 62.243 61.111 4.21 0.00 44.92 3.53
170 171 2.975799 GGCGACTGGCGTTTGGAA 60.976 61.111 4.21 0.00 44.92 3.53
171 172 2.548295 GGCGACTGGCGTTTGGAAA 61.548 57.895 4.21 0.00 44.92 3.13
172 173 1.579429 GCGACTGGCGTTTGGAAAT 59.421 52.632 4.21 0.00 43.41 2.17
173 174 0.039527 GCGACTGGCGTTTGGAAATT 60.040 50.000 4.21 0.00 43.41 1.82
174 175 1.601914 GCGACTGGCGTTTGGAAATTT 60.602 47.619 4.21 0.00 43.41 1.82
175 176 2.738135 CGACTGGCGTTTGGAAATTTT 58.262 42.857 0.00 0.00 34.64 1.82
176 177 2.724174 CGACTGGCGTTTGGAAATTTTC 59.276 45.455 0.00 0.24 34.64 2.29
177 178 3.550030 CGACTGGCGTTTGGAAATTTTCT 60.550 43.478 8.93 0.00 34.64 2.52
178 179 4.319911 CGACTGGCGTTTGGAAATTTTCTA 60.320 41.667 8.93 0.00 34.64 2.10
179 180 4.866921 ACTGGCGTTTGGAAATTTTCTAC 58.133 39.130 8.93 4.82 0.00 2.59
180 181 4.234574 CTGGCGTTTGGAAATTTTCTACC 58.765 43.478 8.93 1.82 0.00 3.18
181 182 3.006003 TGGCGTTTGGAAATTTTCTACCC 59.994 43.478 8.93 8.59 0.00 3.69
182 183 3.257375 GGCGTTTGGAAATTTTCTACCCT 59.743 43.478 8.93 0.00 0.00 4.34
183 184 4.262292 GGCGTTTGGAAATTTTCTACCCTT 60.262 41.667 8.93 0.00 0.00 3.95
184 185 5.294356 GCGTTTGGAAATTTTCTACCCTTT 58.706 37.500 8.93 0.00 0.00 3.11
185 186 5.404366 GCGTTTGGAAATTTTCTACCCTTTC 59.596 40.000 8.93 0.00 0.00 2.62
186 187 6.508777 CGTTTGGAAATTTTCTACCCTTTCA 58.491 36.000 8.93 0.00 30.90 2.69
187 188 6.419710 CGTTTGGAAATTTTCTACCCTTTCAC 59.580 38.462 8.93 0.00 30.90 3.18
188 189 7.497595 GTTTGGAAATTTTCTACCCTTTCACT 58.502 34.615 8.93 0.00 30.90 3.41
189 190 7.669089 TTGGAAATTTTCTACCCTTTCACTT 57.331 32.000 8.93 0.00 30.90 3.16
190 191 7.049799 TGGAAATTTTCTACCCTTTCACTTG 57.950 36.000 8.93 0.00 30.90 3.16
191 192 6.609616 TGGAAATTTTCTACCCTTTCACTTGT 59.390 34.615 8.93 0.00 30.90 3.16
192 193 6.923508 GGAAATTTTCTACCCTTTCACTTGTG 59.076 38.462 8.93 0.00 30.90 3.33
193 194 7.417456 GGAAATTTTCTACCCTTTCACTTGTGT 60.417 37.037 8.93 0.00 30.90 3.72
194 195 5.828299 TTTTCTACCCTTTCACTTGTGTG 57.172 39.130 0.46 0.00 45.07 3.82
195 196 3.485463 TCTACCCTTTCACTTGTGTGG 57.515 47.619 0.46 2.81 43.94 4.17
196 197 1.880027 CTACCCTTTCACTTGTGTGGC 59.120 52.381 0.46 0.00 43.94 5.01
197 198 0.033601 ACCCTTTCACTTGTGTGGCA 60.034 50.000 0.46 0.00 43.94 4.92
198 199 1.110442 CCCTTTCACTTGTGTGGCAA 58.890 50.000 0.00 0.00 43.94 4.52
206 207 2.893441 TTGTGTGGCAAGGCAAAGA 58.107 47.368 0.00 0.00 32.52 2.52
207 208 1.412079 TTGTGTGGCAAGGCAAAGAT 58.588 45.000 0.00 0.00 32.52 2.40
208 209 2.284754 TGTGTGGCAAGGCAAAGATA 57.715 45.000 0.00 0.00 0.00 1.98
209 210 2.591923 TGTGTGGCAAGGCAAAGATAA 58.408 42.857 0.00 0.00 0.00 1.75
210 211 2.557924 TGTGTGGCAAGGCAAAGATAAG 59.442 45.455 0.00 0.00 0.00 1.73
211 212 2.819608 GTGTGGCAAGGCAAAGATAAGA 59.180 45.455 0.00 0.00 0.00 2.10
212 213 3.084039 TGTGGCAAGGCAAAGATAAGAG 58.916 45.455 0.00 0.00 0.00 2.85
213 214 3.084786 GTGGCAAGGCAAAGATAAGAGT 58.915 45.455 0.00 0.00 0.00 3.24
214 215 3.127721 GTGGCAAGGCAAAGATAAGAGTC 59.872 47.826 0.00 0.00 0.00 3.36
215 216 2.352960 GGCAAGGCAAAGATAAGAGTCG 59.647 50.000 0.00 0.00 0.00 4.18
216 217 2.352960 GCAAGGCAAAGATAAGAGTCGG 59.647 50.000 0.00 0.00 0.00 4.79
217 218 2.939103 CAAGGCAAAGATAAGAGTCGGG 59.061 50.000 0.00 0.00 0.00 5.14
218 219 1.134371 AGGCAAAGATAAGAGTCGGGC 60.134 52.381 0.00 0.00 0.00 6.13
219 220 1.406887 GGCAAAGATAAGAGTCGGGCA 60.407 52.381 0.00 0.00 0.00 5.36
220 221 1.936547 GCAAAGATAAGAGTCGGGCAG 59.063 52.381 0.00 0.00 0.00 4.85
221 222 2.555199 CAAAGATAAGAGTCGGGCAGG 58.445 52.381 0.00 0.00 0.00 4.85
222 223 1.867363 AAGATAAGAGTCGGGCAGGT 58.133 50.000 0.00 0.00 0.00 4.00
223 224 1.867363 AGATAAGAGTCGGGCAGGTT 58.133 50.000 0.00 0.00 0.00 3.50
224 225 1.482593 AGATAAGAGTCGGGCAGGTTG 59.517 52.381 0.00 0.00 0.00 3.77
225 226 1.207329 GATAAGAGTCGGGCAGGTTGT 59.793 52.381 0.00 0.00 0.00 3.32
226 227 1.053424 TAAGAGTCGGGCAGGTTGTT 58.947 50.000 0.00 0.00 0.00 2.83
227 228 0.535102 AAGAGTCGGGCAGGTTGTTG 60.535 55.000 0.00 0.00 0.00 3.33
228 229 1.070786 GAGTCGGGCAGGTTGTTGA 59.929 57.895 0.00 0.00 0.00 3.18
229 230 0.951040 GAGTCGGGCAGGTTGTTGAG 60.951 60.000 0.00 0.00 0.00 3.02
230 231 1.070786 GTCGGGCAGGTTGTTGAGA 59.929 57.895 0.00 0.00 0.00 3.27
231 232 0.321653 GTCGGGCAGGTTGTTGAGAT 60.322 55.000 0.00 0.00 0.00 2.75
232 233 0.036388 TCGGGCAGGTTGTTGAGATC 60.036 55.000 0.00 0.00 0.00 2.75
233 234 0.036010 CGGGCAGGTTGTTGAGATCT 60.036 55.000 0.00 0.00 0.00 2.75
234 235 1.611673 CGGGCAGGTTGTTGAGATCTT 60.612 52.381 0.00 0.00 0.00 2.40
235 236 2.354704 CGGGCAGGTTGTTGAGATCTTA 60.355 50.000 0.00 0.00 0.00 2.10
236 237 3.682718 CGGGCAGGTTGTTGAGATCTTAT 60.683 47.826 0.00 0.00 0.00 1.73
237 238 3.879892 GGGCAGGTTGTTGAGATCTTATC 59.120 47.826 0.00 0.00 0.00 1.75
238 239 4.384647 GGGCAGGTTGTTGAGATCTTATCT 60.385 45.833 0.00 0.00 43.70 1.98
239 240 5.189180 GGCAGGTTGTTGAGATCTTATCTT 58.811 41.667 0.00 0.00 40.38 2.40
240 241 5.065731 GGCAGGTTGTTGAGATCTTATCTTG 59.934 44.000 0.00 0.00 40.38 3.02
241 242 5.065731 GCAGGTTGTTGAGATCTTATCTTGG 59.934 44.000 0.00 0.00 40.38 3.61
242 243 6.176183 CAGGTTGTTGAGATCTTATCTTGGT 58.824 40.000 0.00 0.00 40.38 3.67
243 244 6.656693 CAGGTTGTTGAGATCTTATCTTGGTT 59.343 38.462 0.00 0.00 40.38 3.67
244 245 7.824289 CAGGTTGTTGAGATCTTATCTTGGTTA 59.176 37.037 0.00 0.00 40.38 2.85
245 246 8.552296 AGGTTGTTGAGATCTTATCTTGGTTAT 58.448 33.333 0.00 0.00 40.38 1.89
246 247 9.178758 GGTTGTTGAGATCTTATCTTGGTTATT 57.821 33.333 0.00 0.00 40.38 1.40
248 249 9.958180 TTGTTGAGATCTTATCTTGGTTATTCA 57.042 29.630 0.00 0.00 40.38 2.57
253 254 9.890352 GAGATCTTATCTTGGTTATTCATTTGC 57.110 33.333 0.00 0.00 40.38 3.68
254 255 9.412460 AGATCTTATCTTGGTTATTCATTTGCA 57.588 29.630 0.00 0.00 35.76 4.08
255 256 9.674824 GATCTTATCTTGGTTATTCATTTGCAG 57.325 33.333 0.00 0.00 0.00 4.41
256 257 8.579850 TCTTATCTTGGTTATTCATTTGCAGT 57.420 30.769 0.00 0.00 0.00 4.40
257 258 9.023962 TCTTATCTTGGTTATTCATTTGCAGTT 57.976 29.630 0.00 0.00 0.00 3.16
258 259 9.643693 CTTATCTTGGTTATTCATTTGCAGTTT 57.356 29.630 0.00 0.00 0.00 2.66
259 260 9.995003 TTATCTTGGTTATTCATTTGCAGTTTT 57.005 25.926 0.00 0.00 0.00 2.43
260 261 7.945033 TCTTGGTTATTCATTTGCAGTTTTC 57.055 32.000 0.00 0.00 0.00 2.29
261 262 6.928492 TCTTGGTTATTCATTTGCAGTTTTCC 59.072 34.615 0.00 0.00 0.00 3.13
262 263 5.546526 TGGTTATTCATTTGCAGTTTTCCC 58.453 37.500 0.00 0.00 0.00 3.97
263 264 5.306678 TGGTTATTCATTTGCAGTTTTCCCT 59.693 36.000 0.00 0.00 0.00 4.20
264 265 6.495181 TGGTTATTCATTTGCAGTTTTCCCTA 59.505 34.615 0.00 0.00 0.00 3.53
265 266 7.180051 TGGTTATTCATTTGCAGTTTTCCCTAT 59.820 33.333 0.00 0.00 0.00 2.57
266 267 8.040727 GGTTATTCATTTGCAGTTTTCCCTATT 58.959 33.333 0.00 0.00 0.00 1.73
267 268 9.435688 GTTATTCATTTGCAGTTTTCCCTATTT 57.564 29.630 0.00 0.00 0.00 1.40
269 270 8.922931 ATTCATTTGCAGTTTTCCCTATTTTT 57.077 26.923 0.00 0.00 0.00 1.94
362 363 9.856162 TTTTATTTATATAAGAAGCTCCGGGTT 57.144 29.630 0.00 0.00 35.72 4.11
363 364 9.498176 TTTATTTATATAAGAAGCTCCGGGTTC 57.502 33.333 0.00 2.55 46.64 3.62
395 396 3.679824 AAGAGGAAAAGTGTCGTAGGG 57.320 47.619 0.00 0.00 0.00 3.53
396 397 2.606378 AGAGGAAAAGTGTCGTAGGGT 58.394 47.619 0.00 0.00 0.00 4.34
397 398 2.970640 AGAGGAAAAGTGTCGTAGGGTT 59.029 45.455 0.00 0.00 0.00 4.11
398 399 3.006644 AGAGGAAAAGTGTCGTAGGGTTC 59.993 47.826 0.00 0.00 0.00 3.62
399 400 2.038164 AGGAAAAGTGTCGTAGGGTTCC 59.962 50.000 0.00 0.00 34.52 3.62
400 401 2.038164 GGAAAAGTGTCGTAGGGTTCCT 59.962 50.000 0.00 0.00 37.71 3.36
401 402 3.324117 GAAAAGTGTCGTAGGGTTCCTC 58.676 50.000 0.00 0.00 34.61 3.71
402 403 2.305858 AAGTGTCGTAGGGTTCCTCT 57.694 50.000 0.00 0.00 34.61 3.69
403 404 1.836802 AGTGTCGTAGGGTTCCTCTC 58.163 55.000 0.00 0.00 34.61 3.20
404 405 0.816373 GTGTCGTAGGGTTCCTCTCC 59.184 60.000 0.00 0.00 34.61 3.71
405 406 0.702902 TGTCGTAGGGTTCCTCTCCT 59.297 55.000 0.00 0.00 34.61 3.69
406 407 1.918262 TGTCGTAGGGTTCCTCTCCTA 59.082 52.381 0.00 0.00 34.61 2.94
407 408 2.512896 TGTCGTAGGGTTCCTCTCCTAT 59.487 50.000 0.00 0.00 37.87 2.57
408 409 3.053095 TGTCGTAGGGTTCCTCTCCTATT 60.053 47.826 0.00 0.00 37.87 1.73
409 410 4.166725 TGTCGTAGGGTTCCTCTCCTATTA 59.833 45.833 0.00 0.00 37.87 0.98
410 411 4.761227 GTCGTAGGGTTCCTCTCCTATTAG 59.239 50.000 0.00 0.00 37.87 1.73
411 412 4.662179 TCGTAGGGTTCCTCTCCTATTAGA 59.338 45.833 0.00 0.00 37.87 2.10
412 413 4.761227 CGTAGGGTTCCTCTCCTATTAGAC 59.239 50.000 0.00 0.00 37.87 2.59
413 414 4.201894 AGGGTTCCTCTCCTATTAGACC 57.798 50.000 0.00 0.00 0.00 3.85
414 415 3.536434 AGGGTTCCTCTCCTATTAGACCA 59.464 47.826 0.00 0.00 0.00 4.02
415 416 4.173043 AGGGTTCCTCTCCTATTAGACCAT 59.827 45.833 0.00 0.00 0.00 3.55
416 417 4.908481 GGGTTCCTCTCCTATTAGACCATT 59.092 45.833 0.00 0.00 0.00 3.16
417 418 6.082707 GGGTTCCTCTCCTATTAGACCATTA 58.917 44.000 0.00 0.00 0.00 1.90
418 419 6.014413 GGGTTCCTCTCCTATTAGACCATTAC 60.014 46.154 0.00 0.00 0.00 1.89
453 454 4.522789 TGTTAGAAAACCTTTGCATCTCCC 59.477 41.667 0.00 0.00 34.49 4.30
454 455 3.243359 AGAAAACCTTTGCATCTCCCA 57.757 42.857 0.00 0.00 0.00 4.37
455 456 3.575805 AGAAAACCTTTGCATCTCCCAA 58.424 40.909 0.00 0.00 0.00 4.12
458 459 2.610438 ACCTTTGCATCTCCCAATGT 57.390 45.000 0.00 0.00 0.00 2.71
463 464 5.132648 ACCTTTGCATCTCCCAATGTATAGA 59.867 40.000 0.00 0.00 0.00 1.98
473 474 9.720874 ATCTCCCAATGTATAGATGCTTAGATA 57.279 33.333 0.00 0.00 0.00 1.98
479 480 9.935241 CAATGTATAGATGCTTAGATAAGGTGT 57.065 33.333 2.00 0.00 33.95 4.16
489 490 6.316140 TGCTTAGATAAGGTGTTAAGTGCATG 59.684 38.462 0.00 0.00 33.95 4.06
490 491 6.238484 GCTTAGATAAGGTGTTAAGTGCATGG 60.238 42.308 0.00 0.00 33.95 3.66
494 495 6.719370 AGATAAGGTGTTAAGTGCATGGAAAA 59.281 34.615 0.00 0.00 0.00 2.29
495 496 4.853924 AGGTGTTAAGTGCATGGAAAAG 57.146 40.909 0.00 0.00 0.00 2.27
498 499 4.982295 GGTGTTAAGTGCATGGAAAAGTTC 59.018 41.667 0.00 0.00 0.00 3.01
500 501 6.215845 GTGTTAAGTGCATGGAAAAGTTCAT 58.784 36.000 0.00 0.00 0.00 2.57
504 505 5.534207 AGTGCATGGAAAAGTTCATCAAA 57.466 34.783 0.00 0.00 0.00 2.69
506 507 7.230849 AGTGCATGGAAAAGTTCATCAAATA 57.769 32.000 0.00 0.00 0.00 1.40
509 510 8.223100 GTGCATGGAAAAGTTCATCAAATAAAC 58.777 33.333 0.00 0.00 0.00 2.01
514 515 8.576442 TGGAAAAGTTCATCAAATAAACTCCTC 58.424 33.333 0.00 0.00 32.24 3.71
515 516 8.576442 GGAAAAGTTCATCAAATAAACTCCTCA 58.424 33.333 0.00 0.00 32.24 3.86
522 523 8.750515 TCATCAAATAAACTCCTCAATGCATA 57.249 30.769 0.00 0.00 0.00 3.14
569 573 9.822185 AAATTTTGTTTAGCAATCAAACTCTCT 57.178 25.926 0.00 0.00 36.92 3.10
579 583 7.790027 AGCAATCAAACTCTCTCATACATAGT 58.210 34.615 0.00 0.00 0.00 2.12
580 584 7.710044 AGCAATCAAACTCTCTCATACATAGTG 59.290 37.037 0.00 0.00 0.00 2.74
581 585 7.708322 GCAATCAAACTCTCTCATACATAGTGA 59.292 37.037 0.00 0.00 0.00 3.41
587 591 9.950496 AAACTCTCTCATACATAGTGATTTTGT 57.050 29.630 0.00 0.00 0.00 2.83
590 594 9.689976 CTCTCTCATACATAGTGATTTTGTAGG 57.310 37.037 0.00 0.00 30.03 3.18
592 596 9.469807 CTCTCATACATAGTGATTTTGTAGGTC 57.530 37.037 0.00 0.00 31.52 3.85
593 597 8.421784 TCTCATACATAGTGATTTTGTAGGTCC 58.578 37.037 0.00 0.00 31.52 4.46
594 598 7.207383 TCATACATAGTGATTTTGTAGGTCCG 58.793 38.462 0.00 0.00 31.52 4.79
595 599 4.189231 ACATAGTGATTTTGTAGGTCCGC 58.811 43.478 0.00 0.00 0.00 5.54
606 612 0.391130 TAGGTCCGCATGCTTGACAC 60.391 55.000 27.77 20.13 0.00 3.67
639 646 2.611722 GGTCACCAAAGTGCTCTCTCTC 60.612 54.545 0.00 0.00 44.16 3.20
641 648 1.622811 CACCAAAGTGCTCTCTCTCCT 59.377 52.381 0.00 0.00 37.14 3.69
642 649 2.038295 CACCAAAGTGCTCTCTCTCCTT 59.962 50.000 0.00 0.00 37.14 3.36
644 651 3.904339 ACCAAAGTGCTCTCTCTCCTTAA 59.096 43.478 0.00 0.00 0.00 1.85
646 653 5.013599 ACCAAAGTGCTCTCTCTCCTTAATT 59.986 40.000 0.00 0.00 0.00 1.40
648 655 7.106239 CCAAAGTGCTCTCTCTCCTTAATTAA 58.894 38.462 0.00 0.00 0.00 1.40
650 657 9.171877 CAAAGTGCTCTCTCTCCTTAATTAATT 57.828 33.333 5.89 5.89 0.00 1.40
651 658 8.729805 AAGTGCTCTCTCTCCTTAATTAATTG 57.270 34.615 11.05 0.00 0.00 2.32
652 659 6.765512 AGTGCTCTCTCTCCTTAATTAATTGC 59.234 38.462 11.05 1.87 0.00 3.56
653 660 6.765512 GTGCTCTCTCTCCTTAATTAATTGCT 59.234 38.462 11.05 0.00 0.00 3.91
654 661 7.928706 GTGCTCTCTCTCCTTAATTAATTGCTA 59.071 37.037 11.05 0.00 0.00 3.49
655 662 8.654997 TGCTCTCTCTCCTTAATTAATTGCTAT 58.345 33.333 11.05 0.00 0.00 2.97
680 687 4.988540 TGTCAGGTCAGTTTTTCATCTACG 59.011 41.667 0.00 0.00 0.00 3.51
682 689 4.988540 TCAGGTCAGTTTTTCATCTACGTG 59.011 41.667 0.00 0.00 0.00 4.49
683 690 4.750098 CAGGTCAGTTTTTCATCTACGTGT 59.250 41.667 0.00 0.00 0.00 4.49
684 691 5.236478 CAGGTCAGTTTTTCATCTACGTGTT 59.764 40.000 0.00 0.00 0.00 3.32
685 692 6.422701 CAGGTCAGTTTTTCATCTACGTGTTA 59.577 38.462 0.00 0.00 0.00 2.41
686 693 7.117812 CAGGTCAGTTTTTCATCTACGTGTTAT 59.882 37.037 0.00 0.00 0.00 1.89
687 694 7.660208 AGGTCAGTTTTTCATCTACGTGTTATT 59.340 33.333 0.00 0.00 0.00 1.40
688 695 7.955864 GGTCAGTTTTTCATCTACGTGTTATTC 59.044 37.037 0.00 0.00 0.00 1.75
690 697 9.268268 TCAGTTTTTCATCTACGTGTTATTCTT 57.732 29.630 0.00 0.00 0.00 2.52
693 700 9.474249 GTTTTTCATCTACGTGTTATTCTTAGC 57.526 33.333 0.00 0.00 0.00 3.09
694 701 8.766000 TTTTCATCTACGTGTTATTCTTAGCA 57.234 30.769 0.00 0.00 0.00 3.49
696 703 7.096884 TCATCTACGTGTTATTCTTAGCACT 57.903 36.000 0.00 0.00 37.39 4.40
697 704 7.544622 TCATCTACGTGTTATTCTTAGCACTT 58.455 34.615 0.00 0.00 37.39 3.16
698 705 8.033038 TCATCTACGTGTTATTCTTAGCACTTT 58.967 33.333 0.00 0.00 37.39 2.66
699 706 7.576750 TCTACGTGTTATTCTTAGCACTTTG 57.423 36.000 0.00 0.00 37.39 2.77
700 707 7.149973 TCTACGTGTTATTCTTAGCACTTTGT 58.850 34.615 0.00 0.00 37.39 2.83
702 709 7.113704 ACGTGTTATTCTTAGCACTTTGTAC 57.886 36.000 0.00 0.00 37.39 2.90
703 710 6.702723 ACGTGTTATTCTTAGCACTTTGTACA 59.297 34.615 0.00 0.00 37.39 2.90
704 711 7.007697 CGTGTTATTCTTAGCACTTTGTACAC 58.992 38.462 0.00 0.00 37.39 2.90
705 712 7.295930 GTGTTATTCTTAGCACTTTGTACACC 58.704 38.462 0.00 0.00 36.80 4.16
708 715 3.386486 TCTTAGCACTTTGTACACCGTG 58.614 45.455 15.81 15.81 0.00 4.94
709 716 3.068448 TCTTAGCACTTTGTACACCGTGA 59.932 43.478 21.63 4.98 0.00 4.35
711 718 2.210116 AGCACTTTGTACACCGTGAAG 58.790 47.619 21.63 13.34 0.00 3.02
713 720 1.937223 CACTTTGTACACCGTGAAGCA 59.063 47.619 15.28 0.00 0.00 3.91
715 722 2.210116 CTTTGTACACCGTGAAGCACT 58.790 47.619 5.28 0.00 31.34 4.40
716 723 1.860676 TTGTACACCGTGAAGCACTC 58.139 50.000 5.28 0.00 31.34 3.51
717 724 0.747852 TGTACACCGTGAAGCACTCA 59.252 50.000 5.28 0.00 31.34 3.41
718 725 1.137282 TGTACACCGTGAAGCACTCAA 59.863 47.619 5.28 0.00 35.22 3.02
723 743 1.608590 ACCGTGAAGCACTCAAAATGG 59.391 47.619 0.00 0.00 35.22 3.16
736 756 4.021016 ACTCAAAATGGCTAGTCTCGTTCT 60.021 41.667 0.00 0.00 0.00 3.01
738 758 4.929808 TCAAAATGGCTAGTCTCGTTCTTC 59.070 41.667 0.00 0.00 0.00 2.87
740 760 1.183549 TGGCTAGTCTCGTTCTTCCC 58.816 55.000 0.00 0.00 0.00 3.97
742 762 1.549170 GGCTAGTCTCGTTCTTCCCAA 59.451 52.381 0.00 0.00 0.00 4.12
757 777 5.935945 TCTTCCCAAGTGTGAATTAAGTGA 58.064 37.500 0.00 0.00 0.00 3.41
761 781 6.173339 TCCCAAGTGTGAATTAAGTGATCTC 58.827 40.000 0.00 0.00 0.00 2.75
766 786 9.956720 CAAGTGTGAATTAAGTGATCTCTTTTT 57.043 29.630 14.76 9.50 0.00 1.94
849 878 4.751098 TGGTTAACACTTAGTAAGCCAACG 59.249 41.667 9.92 0.00 0.00 4.10
914 945 7.341445 TGCTCACTAACTTTTATTTTGGTGT 57.659 32.000 0.00 0.00 36.07 4.16
915 946 7.777095 TGCTCACTAACTTTTATTTTGGTGTT 58.223 30.769 0.00 0.00 36.07 3.32
916 947 8.254508 TGCTCACTAACTTTTATTTTGGTGTTT 58.745 29.630 0.00 0.00 36.07 2.83
917 948 8.752254 GCTCACTAACTTTTATTTTGGTGTTTC 58.248 33.333 0.00 0.00 36.07 2.78
949 980 3.057969 TCGCCTCCATATAAATGCCAG 57.942 47.619 0.00 0.00 0.00 4.85
1013 1045 1.521457 GAGCGATGGCCACGATCAA 60.521 57.895 28.67 0.36 43.90 2.57
1091 1126 5.249852 CCTTCCAAGGTTATATTATCCCCGA 59.750 44.000 0.00 0.00 41.41 5.14
1107 1142 1.396996 CCCGAAATTTACCTCGCTGTG 59.603 52.381 0.00 0.00 33.70 3.66
1113 1148 1.873698 TTTACCTCGCTGTGTTGGTC 58.126 50.000 10.70 0.00 34.33 4.02
1134 1170 7.145985 TGGTCTATCGATTTATTCTAGTGCAC 58.854 38.462 9.40 9.40 0.00 4.57
1147 1183 0.326264 AGTGCACAGGTCCTGAATCC 59.674 55.000 26.18 10.10 35.18 3.01
1178 1275 4.371786 ACCTCGCAATATGTGTAGTGATG 58.628 43.478 0.00 0.00 0.00 3.07
1297 1394 2.782192 CTGGCGTACGAAGAGAAATACG 59.218 50.000 21.65 0.00 42.51 3.06
1329 1426 2.795297 GACCGGCTCGAGTCAGAG 59.205 66.667 18.62 7.50 41.03 3.35
1664 1765 0.877071 CCTCCGCAATGTATGATGGC 59.123 55.000 0.00 0.00 0.00 4.40
1669 1770 2.349580 CCGCAATGTATGATGGCTATCG 59.650 50.000 5.52 0.00 36.04 2.92
1780 1881 1.442526 CCTACAGGTACGACGGCGAT 61.443 60.000 22.49 3.81 41.64 4.58
1879 1980 0.105453 GGGAGCTCATCAGGGTCCTA 60.105 60.000 17.19 0.00 46.78 2.94
1966 2067 2.446994 ACCAAGGTCCGGTCACCA 60.447 61.111 14.39 0.00 39.16 4.17
1973 2074 1.555477 GGTCCGGTCACCACCCATAA 61.555 60.000 7.44 0.00 40.01 1.90
1974 2075 0.392060 GTCCGGTCACCACCCATAAC 60.392 60.000 0.00 0.00 40.01 1.89
1975 2076 1.078001 CCGGTCACCACCCATAACC 60.078 63.158 0.00 0.00 40.01 2.85
1981 2087 3.580895 GGTCACCACCCATAACCAAATTT 59.419 43.478 0.00 0.00 36.54 1.82
1986 2092 4.252878 CCACCCATAACCAAATTTTGCTC 58.747 43.478 3.50 0.00 0.00 4.26
1994 2100 8.445493 CCATAACCAAATTTTGCTCAATTTCTC 58.555 33.333 3.50 0.00 34.70 2.87
2022 2128 5.708948 CTTTGGATCAATTTGTTAGGCGAA 58.291 37.500 0.00 0.00 0.00 4.70
2027 2133 4.355543 TCAATTTGTTAGGCGAAGATGC 57.644 40.909 0.00 0.00 0.00 3.91
2073 2186 2.905880 CTAGGCCCTGCTGCATGC 60.906 66.667 11.82 11.82 43.25 4.06
2074 2187 4.511246 TAGGCCCTGCTGCATGCC 62.511 66.667 26.79 26.79 44.35 4.40
2303 2416 1.805254 CAAGCCATCGCCAAGGAAG 59.195 57.895 0.00 0.00 34.57 3.46
2331 2444 3.748568 GGTGACTTCAAGACCTTCATCAC 59.251 47.826 0.00 0.00 35.56 3.06
2372 2485 5.366186 AGCCAATAAACCATATGCATCCAAA 59.634 36.000 0.19 0.00 0.00 3.28
2373 2486 6.054295 GCCAATAAACCATATGCATCCAAAA 58.946 36.000 0.19 0.00 0.00 2.44
2476 2590 7.215719 AGATATAATAGCTCGTGTGTTGCTA 57.784 36.000 0.00 0.00 42.44 3.49
2490 2604 2.287909 TGTTGCTACGGAAATTGGTTGC 60.288 45.455 0.00 4.75 35.84 4.17
2534 2648 9.288576 TCTGTTCAATTTGTCTAATTCACATCT 57.711 29.630 0.00 0.00 34.19 2.90
2567 2681 7.865706 TTTAAGGATGTCAAATCTAAGCTCC 57.134 36.000 0.00 0.00 0.00 4.70
2568 2682 4.429854 AGGATGTCAAATCTAAGCTCCC 57.570 45.455 0.00 0.00 0.00 4.30
2569 2683 3.782523 AGGATGTCAAATCTAAGCTCCCA 59.217 43.478 0.00 0.00 0.00 4.37
2570 2684 3.879892 GGATGTCAAATCTAAGCTCCCAC 59.120 47.826 0.00 0.00 0.00 4.61
2571 2685 4.517285 GATGTCAAATCTAAGCTCCCACA 58.483 43.478 0.00 0.00 0.00 4.17
2572 2686 4.365514 TGTCAAATCTAAGCTCCCACAA 57.634 40.909 0.00 0.00 0.00 3.33
2573 2687 4.724399 TGTCAAATCTAAGCTCCCACAAA 58.276 39.130 0.00 0.00 0.00 2.83
2574 2688 5.324409 TGTCAAATCTAAGCTCCCACAAAT 58.676 37.500 0.00 0.00 0.00 2.32
2575 2689 6.480763 TGTCAAATCTAAGCTCCCACAAATA 58.519 36.000 0.00 0.00 0.00 1.40
2576 2690 7.118723 TGTCAAATCTAAGCTCCCACAAATAT 58.881 34.615 0.00 0.00 0.00 1.28
2577 2691 8.271458 TGTCAAATCTAAGCTCCCACAAATATA 58.729 33.333 0.00 0.00 0.00 0.86
2578 2692 9.289782 GTCAAATCTAAGCTCCCACAAATATAT 57.710 33.333 0.00 0.00 0.00 0.86
2583 2697 8.792830 TCTAAGCTCCCACAAATATATAATGC 57.207 34.615 0.00 0.00 0.00 3.56
2584 2698 8.382405 TCTAAGCTCCCACAAATATATAATGCA 58.618 33.333 0.00 0.00 0.00 3.96
2585 2699 7.458409 AAGCTCCCACAAATATATAATGCAG 57.542 36.000 0.00 0.00 0.00 4.41
2586 2700 5.948162 AGCTCCCACAAATATATAATGCAGG 59.052 40.000 0.00 0.00 0.00 4.85
2587 2701 5.945784 GCTCCCACAAATATATAATGCAGGA 59.054 40.000 0.00 9.25 0.00 3.86
2588 2702 6.434028 GCTCCCACAAATATATAATGCAGGAA 59.566 38.462 0.00 0.00 0.00 3.36
2589 2703 7.575720 GCTCCCACAAATATATAATGCAGGAAC 60.576 40.741 0.00 4.72 0.00 3.62
2590 2704 7.293828 TCCCACAAATATATAATGCAGGAACA 58.706 34.615 0.00 0.00 0.00 3.18
2591 2705 7.782168 TCCCACAAATATATAATGCAGGAACAA 59.218 33.333 0.00 0.00 0.00 2.83
2592 2706 8.084073 CCCACAAATATATAATGCAGGAACAAG 58.916 37.037 0.00 0.00 0.00 3.16
2593 2707 8.849168 CCACAAATATATAATGCAGGAACAAGA 58.151 33.333 0.00 0.00 0.00 3.02
2601 2715 9.995003 ATATAATGCAGGAACAAGAAACAAAAA 57.005 25.926 0.00 0.00 0.00 1.94
2647 2761 4.414999 CACAAACAGAGTGGACATCATG 57.585 45.455 0.00 0.00 33.43 3.07
2648 2762 3.817084 CACAAACAGAGTGGACATCATGT 59.183 43.478 0.00 0.00 33.43 3.21
2649 2763 4.067896 ACAAACAGAGTGGACATCATGTC 58.932 43.478 9.53 9.53 46.23 3.06
2675 2789 5.916661 TCTAGATGTGTCCTAGACAAACC 57.083 43.478 0.00 0.00 44.49 3.27
2676 2790 3.983044 AGATGTGTCCTAGACAAACCC 57.017 47.619 0.00 0.00 44.49 4.11
2677 2791 3.248024 AGATGTGTCCTAGACAAACCCA 58.752 45.455 0.00 0.00 44.49 4.51
2678 2792 3.846588 AGATGTGTCCTAGACAAACCCAT 59.153 43.478 0.00 0.00 44.49 4.00
2679 2793 5.030147 AGATGTGTCCTAGACAAACCCATA 58.970 41.667 0.00 0.00 44.49 2.74
2695 2809 8.250538 CAAACCCATATTTGTTTGTATGGAAC 57.749 34.615 11.86 0.00 46.68 3.62
2716 2830 9.921637 TGGAACAAGAATATTTGGATTAACAAC 57.078 29.630 0.00 0.00 31.92 3.32
2720 2834 9.874205 ACAAGAATATTTGGATTAACAACATGG 57.126 29.630 0.00 0.00 32.32 3.66
2857 2973 4.002906 TCACTCATAAGGTGACACCAAC 57.997 45.455 26.30 0.00 41.95 3.77
2859 2975 2.289444 ACTCATAAGGTGACACCAACCG 60.289 50.000 26.30 11.91 41.95 4.44
2877 2993 1.609783 GCACCAGGGTAGCATCCTT 59.390 57.895 7.66 0.00 31.06 3.36
2879 2995 1.207791 CACCAGGGTAGCATCCTTCT 58.792 55.000 0.00 0.00 31.06 2.85
2881 2997 1.273838 ACCAGGGTAGCATCCTTCTCA 60.274 52.381 0.00 0.00 31.06 3.27
2924 3042 9.842775 AAAGAGCATTCTTATTGACTCATATCA 57.157 29.630 0.00 0.00 42.80 2.15
2936 3054 5.256474 TGACTCATATCATAGCATCGAGGA 58.744 41.667 0.00 0.00 0.00 3.71
2947 3065 8.066612 TCATAGCATCGAGGAATACAATCATA 57.933 34.615 0.00 0.00 0.00 2.15
2957 3075 7.118825 CGAGGAATACAATCATAATGAGTGCAT 59.881 37.037 0.00 0.00 45.35 3.96
2962 3080 4.756642 ACAATCATAATGAGTGCATACCCG 59.243 41.667 0.00 0.00 45.35 5.28
2966 3084 0.908910 AATGAGTGCATACCCGACCA 59.091 50.000 0.00 0.00 33.44 4.02
2967 3085 0.908910 ATGAGTGCATACCCGACCAA 59.091 50.000 0.00 0.00 31.57 3.67
2973 3091 0.311790 GCATACCCGACCAATGCATG 59.688 55.000 0.00 0.00 44.27 4.06
2974 3092 0.311790 CATACCCGACCAATGCATGC 59.688 55.000 11.82 11.82 0.00 4.06
2975 3093 0.823356 ATACCCGACCAATGCATGCC 60.823 55.000 16.68 0.00 0.00 4.40
2979 3097 0.179048 CCGACCAATGCATGCCTAGA 60.179 55.000 16.68 0.00 0.00 2.43
3001 3119 1.252175 ACACACAGCCAACACAAACA 58.748 45.000 0.00 0.00 0.00 2.83
3009 3137 3.023119 AGCCAACACAAACACAAGATCA 58.977 40.909 0.00 0.00 0.00 2.92
3011 3139 3.428725 GCCAACACAAACACAAGATCACA 60.429 43.478 0.00 0.00 0.00 3.58
3041 3169 3.369681 GGAGCAATGCCCATGAATGAAAA 60.370 43.478 0.00 0.00 0.00 2.29
3067 3195 4.749245 ACTACCGAAGCAATGAAAACAG 57.251 40.909 0.00 0.00 0.00 3.16
3074 3202 4.790140 CGAAGCAATGAAAACAGTGATAGC 59.210 41.667 0.00 0.00 0.00 2.97
3075 3203 4.346734 AGCAATGAAAACAGTGATAGCG 57.653 40.909 0.00 0.00 0.00 4.26
3077 3205 3.119849 GCAATGAAAACAGTGATAGCGGT 60.120 43.478 0.00 0.00 0.00 5.68
3114 3242 6.072008 CCAACCATATCATGACAACACAAGAA 60.072 38.462 0.00 0.00 0.00 2.52
3115 3243 6.500684 ACCATATCATGACAACACAAGAAC 57.499 37.500 0.00 0.00 0.00 3.01
3121 3249 6.993786 TCATGACAACACAAGAACTACAAA 57.006 33.333 0.00 0.00 0.00 2.83
3122 3250 7.384439 TCATGACAACACAAGAACTACAAAA 57.616 32.000 0.00 0.00 0.00 2.44
3144 3272 4.647424 AAAATGTTCTCCAAAAGCGTCA 57.353 36.364 0.00 0.00 0.00 4.35
3149 3277 1.048601 TCTCCAAAAGCGTCACCTCT 58.951 50.000 0.00 0.00 0.00 3.69
3164 3292 2.561419 CACCTCTAGAAAGGGAACGACA 59.439 50.000 3.61 0.00 41.04 4.35
3166 3294 2.415625 CCTCTAGAAAGGGAACGACACG 60.416 54.545 0.00 0.00 32.35 4.49
3169 3297 1.070275 GAAAGGGAACGACACGGGT 59.930 57.895 0.00 0.00 0.00 5.28
3177 3305 2.880879 CGACACGGGTCATCGCTG 60.881 66.667 19.62 0.00 44.54 5.18
3198 3326 3.772572 TGGATCCAACTATCGAAGGTCAA 59.227 43.478 13.46 0.00 0.00 3.18
3202 3330 5.414789 TCCAACTATCGAAGGTCAAATCA 57.585 39.130 0.00 0.00 0.00 2.57
3239 3367 2.709213 AGATCAAGCCTGAGCAAACTC 58.291 47.619 3.00 0.00 40.59 3.01
3241 3369 0.250901 TCAAGCCTGAGCAAACTCCC 60.251 55.000 0.00 0.00 42.74 4.30
3249 3377 1.888512 TGAGCAAACTCCCAGAAATGC 59.111 47.619 0.00 0.00 42.74 3.56
3253 3381 2.353109 GCAAACTCCCAGAAATGCCTTC 60.353 50.000 0.00 0.00 0.00 3.46
3256 3384 1.378514 TCCCAGAAATGCCTTCGCC 60.379 57.895 0.00 0.00 39.22 5.54
3280 3408 2.198406 GTAATGACGCATAGAACGCCA 58.802 47.619 0.00 0.00 0.00 5.69
3281 3409 1.290203 AATGACGCATAGAACGCCAG 58.710 50.000 0.00 0.00 0.00 4.85
3303 3431 3.443681 GCATTGCCAGGTATAACACACTT 59.556 43.478 0.00 0.00 0.00 3.16
3308 3436 3.933332 GCCAGGTATAACACACTTGAGTC 59.067 47.826 0.00 0.00 0.00 3.36
3316 3444 7.601130 GGTATAACACACTTGAGTCACACATAA 59.399 37.037 0.00 0.00 0.00 1.90
3322 3450 7.283127 ACACACTTGAGTCACACATAAGATTTT 59.717 33.333 0.00 0.00 0.00 1.82
3329 3457 5.476945 AGTCACACATAAGATTTTTCACCCC 59.523 40.000 0.00 0.00 0.00 4.95
3330 3458 5.242838 GTCACACATAAGATTTTTCACCCCA 59.757 40.000 0.00 0.00 0.00 4.96
3342 3470 2.358322 TCACCCCAAAACTTGAGACC 57.642 50.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.757897 TGTGGTATCTTTTGCTGAAATAGG 57.242 37.500 0.00 0.00 0.00 2.57
1 2 7.988737 TCATGTGGTATCTTTTGCTGAAATAG 58.011 34.615 0.00 0.00 0.00 1.73
2 3 7.828717 TCTCATGTGGTATCTTTTGCTGAAATA 59.171 33.333 0.00 0.00 0.00 1.40
3 4 6.660521 TCTCATGTGGTATCTTTTGCTGAAAT 59.339 34.615 0.00 0.00 0.00 2.17
4 5 6.003326 TCTCATGTGGTATCTTTTGCTGAAA 58.997 36.000 0.00 0.00 0.00 2.69
5 6 5.559770 TCTCATGTGGTATCTTTTGCTGAA 58.440 37.500 0.00 0.00 0.00 3.02
6 7 5.164620 TCTCATGTGGTATCTTTTGCTGA 57.835 39.130 0.00 0.00 0.00 4.26
7 8 5.885230 TTCTCATGTGGTATCTTTTGCTG 57.115 39.130 0.00 0.00 0.00 4.41
8 9 8.757982 ATAATTCTCATGTGGTATCTTTTGCT 57.242 30.769 0.00 0.00 0.00 3.91
15 16 9.950496 ACCTCAATATAATTCTCATGTGGTATC 57.050 33.333 0.00 0.00 34.10 2.24
16 17 9.730705 CACCTCAATATAATTCTCATGTGGTAT 57.269 33.333 0.00 0.00 34.10 2.73
17 18 7.661437 GCACCTCAATATAATTCTCATGTGGTA 59.339 37.037 0.00 0.00 34.10 3.25
18 19 6.488006 GCACCTCAATATAATTCTCATGTGGT 59.512 38.462 0.00 0.00 35.67 4.16
19 20 6.713903 AGCACCTCAATATAATTCTCATGTGG 59.286 38.462 0.00 0.00 0.00 4.17
20 21 7.741027 AGCACCTCAATATAATTCTCATGTG 57.259 36.000 0.00 0.00 0.00 3.21
21 22 8.757982 AAAGCACCTCAATATAATTCTCATGT 57.242 30.769 0.00 0.00 0.00 3.21
23 24 9.851686 TGTAAAGCACCTCAATATAATTCTCAT 57.148 29.630 0.00 0.00 0.00 2.90
24 25 9.851686 ATGTAAAGCACCTCAATATAATTCTCA 57.148 29.630 0.00 0.00 0.00 3.27
26 27 9.851686 TGATGTAAAGCACCTCAATATAATTCT 57.148 29.630 0.00 0.00 29.90 2.40
29 30 8.517878 GCATGATGTAAAGCACCTCAATATAAT 58.482 33.333 0.00 0.00 35.71 1.28
30 31 7.501892 TGCATGATGTAAAGCACCTCAATATAA 59.498 33.333 0.00 0.00 35.71 0.98
31 32 6.997476 TGCATGATGTAAAGCACCTCAATATA 59.003 34.615 0.00 0.00 35.71 0.86
32 33 5.829391 TGCATGATGTAAAGCACCTCAATAT 59.171 36.000 0.00 0.00 35.71 1.28
33 34 5.192176 TGCATGATGTAAAGCACCTCAATA 58.808 37.500 0.00 0.00 35.71 1.90
34 35 4.018490 TGCATGATGTAAAGCACCTCAAT 58.982 39.130 0.00 0.00 35.71 2.57
35 36 3.419943 TGCATGATGTAAAGCACCTCAA 58.580 40.909 0.00 0.00 35.71 3.02
36 37 3.070476 TGCATGATGTAAAGCACCTCA 57.930 42.857 0.00 0.00 36.40 3.86
37 38 3.191162 TGTTGCATGATGTAAAGCACCTC 59.809 43.478 0.00 0.00 36.62 3.85
38 39 3.156293 TGTTGCATGATGTAAAGCACCT 58.844 40.909 0.00 0.00 36.62 4.00
39 40 3.574284 TGTTGCATGATGTAAAGCACC 57.426 42.857 0.00 0.00 36.62 5.01
40 41 5.849858 CAATTGTTGCATGATGTAAAGCAC 58.150 37.500 0.00 0.00 36.62 4.40
54 55 4.455174 GCCAAATGCATTGCAATTGTTGC 61.455 43.478 28.48 23.34 44.84 4.17
55 56 3.238441 GCCAAATGCATTGCAATTGTTG 58.762 40.909 28.48 21.57 44.84 3.33
56 57 3.562567 GCCAAATGCATTGCAATTGTT 57.437 38.095 28.48 12.65 44.84 2.83
68 69 4.391405 ACTAAGCCTAATTGCCAAATGC 57.609 40.909 0.00 0.00 41.77 3.56
69 70 6.942532 TCTACTAAGCCTAATTGCCAAATG 57.057 37.500 0.00 0.00 0.00 2.32
70 71 7.779798 TCAATCTACTAAGCCTAATTGCCAAAT 59.220 33.333 0.00 0.00 0.00 2.32
71 72 7.116075 TCAATCTACTAAGCCTAATTGCCAAA 58.884 34.615 0.00 0.00 0.00 3.28
72 73 6.658849 TCAATCTACTAAGCCTAATTGCCAA 58.341 36.000 0.00 0.00 0.00 4.52
73 74 6.247229 TCAATCTACTAAGCCTAATTGCCA 57.753 37.500 0.00 0.00 0.00 4.92
74 75 6.712547 ACATCAATCTACTAAGCCTAATTGCC 59.287 38.462 0.00 0.00 0.00 4.52
75 76 7.736447 ACATCAATCTACTAAGCCTAATTGC 57.264 36.000 0.00 0.00 0.00 3.56
77 78 9.046296 CGAAACATCAATCTACTAAGCCTAATT 57.954 33.333 0.00 0.00 0.00 1.40
78 79 8.421784 TCGAAACATCAATCTACTAAGCCTAAT 58.578 33.333 0.00 0.00 0.00 1.73
79 80 7.778083 TCGAAACATCAATCTACTAAGCCTAA 58.222 34.615 0.00 0.00 0.00 2.69
80 81 7.342769 TCGAAACATCAATCTACTAAGCCTA 57.657 36.000 0.00 0.00 0.00 3.93
81 82 6.222038 TCGAAACATCAATCTACTAAGCCT 57.778 37.500 0.00 0.00 0.00 4.58
82 83 5.050702 GCTCGAAACATCAATCTACTAAGCC 60.051 44.000 0.00 0.00 0.00 4.35
83 84 5.050702 GGCTCGAAACATCAATCTACTAAGC 60.051 44.000 0.00 0.00 0.00 3.09
84 85 6.276847 AGGCTCGAAACATCAATCTACTAAG 58.723 40.000 0.00 0.00 0.00 2.18
85 86 6.222038 AGGCTCGAAACATCAATCTACTAA 57.778 37.500 0.00 0.00 0.00 2.24
86 87 5.854010 AGGCTCGAAACATCAATCTACTA 57.146 39.130 0.00 0.00 0.00 1.82
87 88 4.744795 AGGCTCGAAACATCAATCTACT 57.255 40.909 0.00 0.00 0.00 2.57
88 89 4.745620 GGTAGGCTCGAAACATCAATCTAC 59.254 45.833 0.00 0.00 0.00 2.59
89 90 4.202223 GGGTAGGCTCGAAACATCAATCTA 60.202 45.833 0.00 0.00 0.00 1.98
90 91 3.432326 GGGTAGGCTCGAAACATCAATCT 60.432 47.826 0.00 0.00 0.00 2.40
91 92 2.872858 GGGTAGGCTCGAAACATCAATC 59.127 50.000 0.00 0.00 0.00 2.67
92 93 2.505819 AGGGTAGGCTCGAAACATCAAT 59.494 45.455 0.00 0.00 0.00 2.57
93 94 1.906574 AGGGTAGGCTCGAAACATCAA 59.093 47.619 0.00 0.00 0.00 2.57
94 95 1.480954 GAGGGTAGGCTCGAAACATCA 59.519 52.381 0.00 0.00 0.00 3.07
95 96 1.202545 GGAGGGTAGGCTCGAAACATC 60.203 57.143 0.00 0.00 0.00 3.06
96 97 0.831307 GGAGGGTAGGCTCGAAACAT 59.169 55.000 0.00 0.00 0.00 2.71
97 98 0.543410 TGGAGGGTAGGCTCGAAACA 60.543 55.000 0.00 0.00 0.00 2.83
98 99 0.831307 ATGGAGGGTAGGCTCGAAAC 59.169 55.000 0.00 0.00 0.00 2.78
99 100 1.580059 AATGGAGGGTAGGCTCGAAA 58.420 50.000 0.00 0.00 0.00 3.46
100 101 2.464796 TAATGGAGGGTAGGCTCGAA 57.535 50.000 0.00 0.00 0.00 3.71
101 102 2.158370 TGATAATGGAGGGTAGGCTCGA 60.158 50.000 0.00 0.00 0.00 4.04
102 103 2.248248 TGATAATGGAGGGTAGGCTCG 58.752 52.381 0.00 0.00 0.00 5.03
103 104 3.620966 GCATGATAATGGAGGGTAGGCTC 60.621 52.174 0.00 0.00 0.00 4.70
104 105 2.307098 GCATGATAATGGAGGGTAGGCT 59.693 50.000 0.00 0.00 0.00 4.58
105 106 2.307098 AGCATGATAATGGAGGGTAGGC 59.693 50.000 0.00 0.00 0.00 3.93
106 107 5.026121 TCTAGCATGATAATGGAGGGTAGG 58.974 45.833 0.00 0.00 0.00 3.18
107 108 6.805016 ATCTAGCATGATAATGGAGGGTAG 57.195 41.667 0.00 0.00 0.00 3.18
108 109 6.127338 CGAATCTAGCATGATAATGGAGGGTA 60.127 42.308 0.00 0.00 0.00 3.69
109 110 5.337894 CGAATCTAGCATGATAATGGAGGGT 60.338 44.000 0.00 0.00 0.00 4.34
110 111 5.114780 CGAATCTAGCATGATAATGGAGGG 58.885 45.833 0.00 0.00 0.00 4.30
111 112 4.569966 GCGAATCTAGCATGATAATGGAGG 59.430 45.833 0.00 0.00 34.19 4.30
112 113 4.569966 GGCGAATCTAGCATGATAATGGAG 59.430 45.833 0.00 0.00 36.08 3.86
113 114 4.020307 TGGCGAATCTAGCATGATAATGGA 60.020 41.667 0.00 0.00 36.08 3.41
114 115 4.093998 GTGGCGAATCTAGCATGATAATGG 59.906 45.833 0.00 0.00 36.08 3.16
115 116 4.934001 AGTGGCGAATCTAGCATGATAATG 59.066 41.667 0.00 0.00 36.08 1.90
116 117 4.934001 CAGTGGCGAATCTAGCATGATAAT 59.066 41.667 0.00 0.00 36.08 1.28
117 118 4.309933 CAGTGGCGAATCTAGCATGATAA 58.690 43.478 0.00 0.00 36.08 1.75
118 119 3.862264 GCAGTGGCGAATCTAGCATGATA 60.862 47.826 0.00 0.00 36.08 2.15
119 120 2.763933 CAGTGGCGAATCTAGCATGAT 58.236 47.619 0.00 0.00 36.08 2.45
120 121 1.807755 GCAGTGGCGAATCTAGCATGA 60.808 52.381 0.00 0.00 36.08 3.07
121 122 0.585357 GCAGTGGCGAATCTAGCATG 59.415 55.000 0.00 0.00 36.08 4.06
122 123 2.997899 GCAGTGGCGAATCTAGCAT 58.002 52.632 0.00 0.00 36.08 3.79
123 124 4.521075 GCAGTGGCGAATCTAGCA 57.479 55.556 0.00 0.00 36.08 3.49
133 134 1.068748 CAGACATCAACAAGCAGTGGC 60.069 52.381 0.00 0.00 41.61 5.01
134 135 1.538512 CCAGACATCAACAAGCAGTGG 59.461 52.381 0.00 0.00 0.00 4.00
135 136 1.068748 GCCAGACATCAACAAGCAGTG 60.069 52.381 0.00 0.00 0.00 3.66
136 137 1.242076 GCCAGACATCAACAAGCAGT 58.758 50.000 0.00 0.00 0.00 4.40
137 138 0.167470 CGCCAGACATCAACAAGCAG 59.833 55.000 0.00 0.00 0.00 4.24
138 139 0.250252 TCGCCAGACATCAACAAGCA 60.250 50.000 0.00 0.00 0.00 3.91
139 140 0.166814 GTCGCCAGACATCAACAAGC 59.833 55.000 0.00 0.00 46.32 4.01
150 151 2.664851 CAAACGCCAGTCGCCAGA 60.665 61.111 0.00 0.00 43.23 3.86
151 152 3.726517 CCAAACGCCAGTCGCCAG 61.727 66.667 0.00 0.00 43.23 4.85
152 153 3.758973 TTCCAAACGCCAGTCGCCA 62.759 57.895 0.00 0.00 43.23 5.69
153 154 1.862602 ATTTCCAAACGCCAGTCGCC 61.863 55.000 0.00 0.00 43.23 5.54
154 155 0.039527 AATTTCCAAACGCCAGTCGC 60.040 50.000 0.00 0.00 43.23 5.19
155 156 2.415697 AAATTTCCAAACGCCAGTCG 57.584 45.000 0.00 0.00 45.38 4.18
156 157 3.977427 AGAAAATTTCCAAACGCCAGTC 58.023 40.909 1.57 0.00 0.00 3.51
157 158 4.261867 GGTAGAAAATTTCCAAACGCCAGT 60.262 41.667 1.57 0.00 0.00 4.00
158 159 4.234574 GGTAGAAAATTTCCAAACGCCAG 58.765 43.478 1.57 0.00 0.00 4.85
159 160 3.006003 GGGTAGAAAATTTCCAAACGCCA 59.994 43.478 1.57 0.00 0.00 5.69
160 161 3.257375 AGGGTAGAAAATTTCCAAACGCC 59.743 43.478 1.57 3.44 0.00 5.68
161 162 4.514781 AGGGTAGAAAATTTCCAAACGC 57.485 40.909 1.57 7.15 0.00 4.84
162 163 6.419710 GTGAAAGGGTAGAAAATTTCCAAACG 59.580 38.462 1.57 0.00 32.01 3.60
163 164 7.497595 AGTGAAAGGGTAGAAAATTTCCAAAC 58.502 34.615 1.57 0.00 32.01 2.93
164 165 7.669089 AGTGAAAGGGTAGAAAATTTCCAAA 57.331 32.000 1.57 0.00 32.01 3.28
165 166 7.125053 ACAAGTGAAAGGGTAGAAAATTTCCAA 59.875 33.333 1.57 0.00 32.01 3.53
166 167 6.609616 ACAAGTGAAAGGGTAGAAAATTTCCA 59.390 34.615 1.57 0.00 32.01 3.53
167 168 6.923508 CACAAGTGAAAGGGTAGAAAATTTCC 59.076 38.462 1.57 0.00 32.01 3.13
168 169 7.489160 ACACAAGTGAAAGGGTAGAAAATTTC 58.511 34.615 7.28 0.00 33.31 2.17
169 170 7.418337 ACACAAGTGAAAGGGTAGAAAATTT 57.582 32.000 7.28 0.00 0.00 1.82
188 189 1.412079 ATCTTTGCCTTGCCACACAA 58.588 45.000 0.00 0.00 36.62 3.33
189 190 2.284754 TATCTTTGCCTTGCCACACA 57.715 45.000 0.00 0.00 0.00 3.72
190 191 2.819608 TCTTATCTTTGCCTTGCCACAC 59.180 45.455 0.00 0.00 0.00 3.82
191 192 3.084039 CTCTTATCTTTGCCTTGCCACA 58.916 45.455 0.00 0.00 0.00 4.17
192 193 3.084786 ACTCTTATCTTTGCCTTGCCAC 58.915 45.455 0.00 0.00 0.00 5.01
193 194 3.347216 GACTCTTATCTTTGCCTTGCCA 58.653 45.455 0.00 0.00 0.00 4.92
194 195 2.352960 CGACTCTTATCTTTGCCTTGCC 59.647 50.000 0.00 0.00 0.00 4.52
195 196 2.352960 CCGACTCTTATCTTTGCCTTGC 59.647 50.000 0.00 0.00 0.00 4.01
196 197 2.939103 CCCGACTCTTATCTTTGCCTTG 59.061 50.000 0.00 0.00 0.00 3.61
197 198 2.681097 GCCCGACTCTTATCTTTGCCTT 60.681 50.000 0.00 0.00 0.00 4.35
198 199 1.134371 GCCCGACTCTTATCTTTGCCT 60.134 52.381 0.00 0.00 0.00 4.75
199 200 1.300481 GCCCGACTCTTATCTTTGCC 58.700 55.000 0.00 0.00 0.00 4.52
200 201 1.936547 CTGCCCGACTCTTATCTTTGC 59.063 52.381 0.00 0.00 0.00 3.68
201 202 2.093447 ACCTGCCCGACTCTTATCTTTG 60.093 50.000 0.00 0.00 0.00 2.77
202 203 2.188817 ACCTGCCCGACTCTTATCTTT 58.811 47.619 0.00 0.00 0.00 2.52
203 204 1.867363 ACCTGCCCGACTCTTATCTT 58.133 50.000 0.00 0.00 0.00 2.40
204 205 1.482593 CAACCTGCCCGACTCTTATCT 59.517 52.381 0.00 0.00 0.00 1.98
205 206 1.207329 ACAACCTGCCCGACTCTTATC 59.793 52.381 0.00 0.00 0.00 1.75
206 207 1.276622 ACAACCTGCCCGACTCTTAT 58.723 50.000 0.00 0.00 0.00 1.73
207 208 1.053424 AACAACCTGCCCGACTCTTA 58.947 50.000 0.00 0.00 0.00 2.10
208 209 0.535102 CAACAACCTGCCCGACTCTT 60.535 55.000 0.00 0.00 0.00 2.85
209 210 1.071471 CAACAACCTGCCCGACTCT 59.929 57.895 0.00 0.00 0.00 3.24
210 211 0.951040 CTCAACAACCTGCCCGACTC 60.951 60.000 0.00 0.00 0.00 3.36
211 212 1.071471 CTCAACAACCTGCCCGACT 59.929 57.895 0.00 0.00 0.00 4.18
212 213 0.321653 ATCTCAACAACCTGCCCGAC 60.322 55.000 0.00 0.00 0.00 4.79
213 214 0.036388 GATCTCAACAACCTGCCCGA 60.036 55.000 0.00 0.00 0.00 5.14
214 215 0.036010 AGATCTCAACAACCTGCCCG 60.036 55.000 0.00 0.00 0.00 6.13
215 216 2.206576 AAGATCTCAACAACCTGCCC 57.793 50.000 0.00 0.00 0.00 5.36
216 217 4.775236 AGATAAGATCTCAACAACCTGCC 58.225 43.478 0.00 0.00 33.42 4.85
217 218 5.065731 CCAAGATAAGATCTCAACAACCTGC 59.934 44.000 0.00 0.00 39.08 4.85
218 219 6.176183 ACCAAGATAAGATCTCAACAACCTG 58.824 40.000 0.00 0.00 39.08 4.00
219 220 6.380079 ACCAAGATAAGATCTCAACAACCT 57.620 37.500 0.00 0.00 39.08 3.50
220 221 8.738645 ATAACCAAGATAAGATCTCAACAACC 57.261 34.615 0.00 0.00 39.08 3.77
222 223 9.958180 TGAATAACCAAGATAAGATCTCAACAA 57.042 29.630 0.00 0.00 39.08 2.83
227 228 9.890352 GCAAATGAATAACCAAGATAAGATCTC 57.110 33.333 0.00 0.00 39.08 2.75
228 229 9.412460 TGCAAATGAATAACCAAGATAAGATCT 57.588 29.630 0.00 0.00 42.61 2.75
229 230 9.674824 CTGCAAATGAATAACCAAGATAAGATC 57.325 33.333 0.00 0.00 0.00 2.75
230 231 9.193806 ACTGCAAATGAATAACCAAGATAAGAT 57.806 29.630 0.00 0.00 0.00 2.40
231 232 8.579850 ACTGCAAATGAATAACCAAGATAAGA 57.420 30.769 0.00 0.00 0.00 2.10
232 233 9.643693 AAACTGCAAATGAATAACCAAGATAAG 57.356 29.630 0.00 0.00 0.00 1.73
233 234 9.995003 AAAACTGCAAATGAATAACCAAGATAA 57.005 25.926 0.00 0.00 0.00 1.75
234 235 9.638239 GAAAACTGCAAATGAATAACCAAGATA 57.362 29.630 0.00 0.00 0.00 1.98
235 236 7.603784 GGAAAACTGCAAATGAATAACCAAGAT 59.396 33.333 0.00 0.00 0.00 2.40
236 237 6.928492 GGAAAACTGCAAATGAATAACCAAGA 59.072 34.615 0.00 0.00 0.00 3.02
237 238 6.147656 GGGAAAACTGCAAATGAATAACCAAG 59.852 38.462 0.00 0.00 0.00 3.61
238 239 5.994668 GGGAAAACTGCAAATGAATAACCAA 59.005 36.000 0.00 0.00 0.00 3.67
239 240 5.306678 AGGGAAAACTGCAAATGAATAACCA 59.693 36.000 0.00 0.00 0.00 3.67
240 241 5.793817 AGGGAAAACTGCAAATGAATAACC 58.206 37.500 0.00 0.00 0.00 2.85
241 242 9.435688 AAATAGGGAAAACTGCAAATGAATAAC 57.564 29.630 0.00 0.00 0.00 1.89
244 245 8.922931 AAAAATAGGGAAAACTGCAAATGAAT 57.077 26.923 0.00 0.00 0.00 2.57
336 337 9.856162 AACCCGGAGCTTCTTATATAAATAAAA 57.144 29.630 0.73 0.00 0.00 1.52
337 338 9.498176 GAACCCGGAGCTTCTTATATAAATAAA 57.502 33.333 0.73 0.00 0.00 1.40
338 339 8.877195 AGAACCCGGAGCTTCTTATATAAATAA 58.123 33.333 0.73 0.00 0.00 1.40
339 340 8.431910 AGAACCCGGAGCTTCTTATATAAATA 57.568 34.615 0.73 0.00 0.00 1.40
340 341 7.317722 AGAACCCGGAGCTTCTTATATAAAT 57.682 36.000 0.73 0.00 0.00 1.40
341 342 6.239515 GGAGAACCCGGAGCTTCTTATATAAA 60.240 42.308 0.73 0.00 0.00 1.40
342 343 5.245526 GGAGAACCCGGAGCTTCTTATATAA 59.754 44.000 0.73 0.00 0.00 0.98
343 344 4.771054 GGAGAACCCGGAGCTTCTTATATA 59.229 45.833 0.73 0.00 0.00 0.86
344 345 3.579151 GGAGAACCCGGAGCTTCTTATAT 59.421 47.826 0.73 0.00 0.00 0.86
345 346 2.963782 GGAGAACCCGGAGCTTCTTATA 59.036 50.000 0.73 0.00 0.00 0.98
346 347 1.763545 GGAGAACCCGGAGCTTCTTAT 59.236 52.381 0.73 0.00 0.00 1.73
347 348 1.192428 GGAGAACCCGGAGCTTCTTA 58.808 55.000 0.73 0.00 0.00 2.10
348 349 1.984020 GGAGAACCCGGAGCTTCTT 59.016 57.895 0.73 0.00 0.00 2.52
349 350 3.715015 GGAGAACCCGGAGCTTCT 58.285 61.111 0.73 5.81 0.00 2.85
372 373 4.820173 CCCTACGACACTTTTCCTCTTTTT 59.180 41.667 0.00 0.00 0.00 1.94
373 374 4.141551 ACCCTACGACACTTTTCCTCTTTT 60.142 41.667 0.00 0.00 0.00 2.27
374 375 3.390311 ACCCTACGACACTTTTCCTCTTT 59.610 43.478 0.00 0.00 0.00 2.52
375 376 2.970640 ACCCTACGACACTTTTCCTCTT 59.029 45.455 0.00 0.00 0.00 2.85
376 377 2.606378 ACCCTACGACACTTTTCCTCT 58.394 47.619 0.00 0.00 0.00 3.69
377 378 3.324117 GAACCCTACGACACTTTTCCTC 58.676 50.000 0.00 0.00 0.00 3.71
378 379 2.038164 GGAACCCTACGACACTTTTCCT 59.962 50.000 0.00 0.00 0.00 3.36
379 380 2.038164 AGGAACCCTACGACACTTTTCC 59.962 50.000 0.00 0.00 28.47 3.13
380 381 3.006644 AGAGGAACCCTACGACACTTTTC 59.993 47.826 0.00 0.00 31.76 2.29
381 382 2.970640 AGAGGAACCCTACGACACTTTT 59.029 45.455 0.00 0.00 31.76 2.27
382 383 2.561858 GAGAGGAACCCTACGACACTTT 59.438 50.000 0.00 0.00 31.76 2.66
383 384 2.169330 GAGAGGAACCCTACGACACTT 58.831 52.381 0.00 0.00 31.76 3.16
384 385 1.616456 GGAGAGGAACCCTACGACACT 60.616 57.143 0.00 0.00 31.76 3.55
385 386 0.816373 GGAGAGGAACCCTACGACAC 59.184 60.000 0.00 0.00 31.76 3.67
386 387 0.702902 AGGAGAGGAACCCTACGACA 59.297 55.000 0.00 0.00 31.76 4.35
387 388 2.725221 TAGGAGAGGAACCCTACGAC 57.275 55.000 0.00 0.00 31.76 4.34
388 389 3.967467 AATAGGAGAGGAACCCTACGA 57.033 47.619 0.00 0.00 37.81 3.43
389 390 4.761227 GTCTAATAGGAGAGGAACCCTACG 59.239 50.000 0.00 0.00 37.81 3.51
390 391 5.078949 GGTCTAATAGGAGAGGAACCCTAC 58.921 50.000 0.00 0.00 37.81 3.18
391 392 4.735537 TGGTCTAATAGGAGAGGAACCCTA 59.264 45.833 0.00 0.00 39.18 3.53
392 393 3.536434 TGGTCTAATAGGAGAGGAACCCT 59.464 47.826 0.00 0.00 36.03 4.34
393 394 3.924922 TGGTCTAATAGGAGAGGAACCC 58.075 50.000 0.00 0.00 0.00 4.11
394 395 6.783482 AGTAATGGTCTAATAGGAGAGGAACC 59.217 42.308 0.00 0.00 0.00 3.62
395 396 7.842887 AGTAATGGTCTAATAGGAGAGGAAC 57.157 40.000 0.00 0.00 0.00 3.62
396 397 9.756571 GATAGTAATGGTCTAATAGGAGAGGAA 57.243 37.037 0.00 0.00 0.00 3.36
397 398 8.901841 TGATAGTAATGGTCTAATAGGAGAGGA 58.098 37.037 0.00 0.00 0.00 3.71
398 399 9.707957 ATGATAGTAATGGTCTAATAGGAGAGG 57.292 37.037 0.00 0.00 0.00 3.69
431 432 4.522789 TGGGAGATGCAAAGGTTTTCTAAC 59.477 41.667 0.00 0.00 0.00 2.34
432 433 4.735369 TGGGAGATGCAAAGGTTTTCTAA 58.265 39.130 0.00 0.00 0.00 2.10
434 435 3.243359 TGGGAGATGCAAAGGTTTTCT 57.757 42.857 0.00 0.00 0.00 2.52
440 441 5.624159 TCTATACATTGGGAGATGCAAAGG 58.376 41.667 0.00 0.00 0.00 3.11
441 442 7.142306 CATCTATACATTGGGAGATGCAAAG 57.858 40.000 10.09 0.00 39.03 2.77
446 447 7.845037 TCTAAGCATCTATACATTGGGAGATG 58.155 38.462 15.19 15.19 45.33 2.90
447 448 8.621126 ATCTAAGCATCTATACATTGGGAGAT 57.379 34.615 0.00 0.00 0.00 2.75
453 454 9.935241 ACACCTTATCTAAGCATCTATACATTG 57.065 33.333 0.00 0.00 32.02 2.82
463 464 6.414732 TGCACTTAACACCTTATCTAAGCAT 58.585 36.000 0.00 0.00 32.02 3.79
466 467 7.047891 TCCATGCACTTAACACCTTATCTAAG 58.952 38.462 0.00 0.00 0.00 2.18
473 474 4.649218 ACTTTTCCATGCACTTAACACCTT 59.351 37.500 0.00 0.00 0.00 3.50
479 480 6.647334 TGATGAACTTTTCCATGCACTTAA 57.353 33.333 0.00 0.00 0.00 1.85
480 481 6.647334 TTGATGAACTTTTCCATGCACTTA 57.353 33.333 0.00 0.00 0.00 2.24
489 490 8.576442 TGAGGAGTTTATTTGATGAACTTTTCC 58.424 33.333 0.54 0.00 38.94 3.13
490 491 9.965824 TTGAGGAGTTTATTTGATGAACTTTTC 57.034 29.630 0.54 3.01 38.94 2.29
494 495 7.177216 TGCATTGAGGAGTTTATTTGATGAACT 59.823 33.333 0.00 0.00 41.16 3.01
495 496 7.315142 TGCATTGAGGAGTTTATTTGATGAAC 58.685 34.615 0.00 0.00 0.00 3.18
498 499 8.080417 CCTATGCATTGAGGAGTTTATTTGATG 58.920 37.037 9.61 0.00 34.46 3.07
500 501 7.067372 CACCTATGCATTGAGGAGTTTATTTGA 59.933 37.037 20.28 0.00 36.61 2.69
543 544 9.822185 AGAGAGTTTGATTGCTAAACAAAATTT 57.178 25.926 0.00 0.00 42.86 1.82
546 547 7.995289 TGAGAGAGTTTGATTGCTAAACAAAA 58.005 30.769 0.00 0.00 42.86 2.44
547 548 7.566760 TGAGAGAGTTTGATTGCTAAACAAA 57.433 32.000 0.00 0.00 42.86 2.83
566 570 9.469807 GACCTACAAAATCACTATGTATGAGAG 57.530 37.037 0.00 0.00 0.00 3.20
568 572 7.382488 CGGACCTACAAAATCACTATGTATGAG 59.618 40.741 0.00 0.00 0.00 2.90
569 573 7.207383 CGGACCTACAAAATCACTATGTATGA 58.793 38.462 0.00 0.00 0.00 2.15
577 581 2.851263 TGCGGACCTACAAAATCACT 57.149 45.000 0.00 0.00 0.00 3.41
579 583 1.742831 GCATGCGGACCTACAAAATCA 59.257 47.619 0.00 0.00 0.00 2.57
580 584 2.017049 AGCATGCGGACCTACAAAATC 58.983 47.619 13.01 0.00 0.00 2.17
581 585 2.128771 AGCATGCGGACCTACAAAAT 57.871 45.000 13.01 0.00 0.00 1.82
586 590 0.391130 TGTCAAGCATGCGGACCTAC 60.391 55.000 30.00 17.50 0.00 3.18
587 591 0.391130 GTGTCAAGCATGCGGACCTA 60.391 55.000 30.00 17.39 0.00 3.08
589 593 2.690778 GGTGTCAAGCATGCGGACC 61.691 63.158 30.00 23.30 0.00 4.46
590 594 2.870372 GGTGTCAAGCATGCGGAC 59.130 61.111 27.98 27.98 0.00 4.79
592 596 2.128853 AAACGGTGTCAAGCATGCGG 62.129 55.000 13.01 9.14 0.00 5.69
593 597 0.317770 AAAACGGTGTCAAGCATGCG 60.318 50.000 13.01 0.00 0.00 4.73
594 598 1.851658 AAAAACGGTGTCAAGCATGC 58.148 45.000 10.51 10.51 0.00 4.06
615 622 0.109342 AGAGCACTTTGGTGACCCAG 59.891 55.000 0.00 0.00 45.61 4.45
618 625 1.346068 AGAGAGAGCACTTTGGTGACC 59.654 52.381 0.00 0.00 45.61 4.02
623 630 4.543590 TTAAGGAGAGAGAGCACTTTGG 57.456 45.455 0.00 0.00 0.00 3.28
644 651 9.632638 AAACTGACCTGACATATAGCAATTAAT 57.367 29.630 0.00 0.00 0.00 1.40
646 653 9.461312 AAAAACTGACCTGACATATAGCAATTA 57.539 29.630 0.00 0.00 0.00 1.40
648 655 7.611467 TGAAAAACTGACCTGACATATAGCAAT 59.389 33.333 0.00 0.00 0.00 3.56
650 657 6.472016 TGAAAAACTGACCTGACATATAGCA 58.528 36.000 0.00 0.00 0.00 3.49
651 658 6.985188 TGAAAAACTGACCTGACATATAGC 57.015 37.500 0.00 0.00 0.00 2.97
652 659 8.954950 AGATGAAAAACTGACCTGACATATAG 57.045 34.615 0.00 0.00 0.00 1.31
653 660 9.817809 GTAGATGAAAAACTGACCTGACATATA 57.182 33.333 0.00 0.00 0.00 0.86
654 661 7.492669 CGTAGATGAAAAACTGACCTGACATAT 59.507 37.037 0.00 0.00 0.00 1.78
655 662 6.811665 CGTAGATGAAAAACTGACCTGACATA 59.188 38.462 0.00 0.00 0.00 2.29
656 663 5.639506 CGTAGATGAAAAACTGACCTGACAT 59.360 40.000 0.00 0.00 0.00 3.06
657 664 4.988540 CGTAGATGAAAAACTGACCTGACA 59.011 41.667 0.00 0.00 0.00 3.58
659 666 4.988540 CACGTAGATGAAAAACTGACCTGA 59.011 41.667 0.00 0.00 0.00 3.86
660 667 4.750098 ACACGTAGATGAAAAACTGACCTG 59.250 41.667 0.00 0.00 0.00 4.00
661 668 4.957296 ACACGTAGATGAAAAACTGACCT 58.043 39.130 0.00 0.00 0.00 3.85
662 669 5.668558 AACACGTAGATGAAAAACTGACC 57.331 39.130 0.00 0.00 0.00 4.02
663 670 8.709646 AGAATAACACGTAGATGAAAAACTGAC 58.290 33.333 0.00 0.00 0.00 3.51
664 671 8.827177 AGAATAACACGTAGATGAAAAACTGA 57.173 30.769 0.00 0.00 0.00 3.41
680 687 7.295930 GGTGTACAAAGTGCTAAGAATAACAC 58.704 38.462 0.00 0.00 33.39 3.32
682 689 6.146673 ACGGTGTACAAAGTGCTAAGAATAAC 59.853 38.462 0.00 0.00 0.00 1.89
683 690 6.146510 CACGGTGTACAAAGTGCTAAGAATAA 59.853 38.462 15.94 0.00 0.00 1.40
684 691 5.636121 CACGGTGTACAAAGTGCTAAGAATA 59.364 40.000 15.94 0.00 0.00 1.75
685 692 4.451096 CACGGTGTACAAAGTGCTAAGAAT 59.549 41.667 15.94 0.00 0.00 2.40
686 693 3.805422 CACGGTGTACAAAGTGCTAAGAA 59.195 43.478 15.94 0.00 0.00 2.52
687 694 3.068448 TCACGGTGTACAAAGTGCTAAGA 59.932 43.478 20.79 6.64 34.84 2.10
688 695 3.386486 TCACGGTGTACAAAGTGCTAAG 58.614 45.455 20.79 4.31 34.84 2.18
690 697 3.386486 CTTCACGGTGTACAAAGTGCTA 58.614 45.455 20.79 13.13 34.84 3.49
691 698 2.210116 CTTCACGGTGTACAAAGTGCT 58.790 47.619 20.79 0.00 34.84 4.40
692 699 1.333791 GCTTCACGGTGTACAAAGTGC 60.334 52.381 20.79 10.47 34.84 4.40
693 700 1.937223 TGCTTCACGGTGTACAAAGTG 59.063 47.619 19.98 19.98 36.06 3.16
694 701 1.937899 GTGCTTCACGGTGTACAAAGT 59.062 47.619 8.17 0.00 0.00 2.66
696 703 2.206750 GAGTGCTTCACGGTGTACAAA 58.793 47.619 8.17 0.00 39.64 2.83
697 704 1.137282 TGAGTGCTTCACGGTGTACAA 59.863 47.619 8.17 0.00 39.64 2.41
698 705 0.747852 TGAGTGCTTCACGGTGTACA 59.252 50.000 8.17 0.00 39.64 2.90
699 706 1.860676 TTGAGTGCTTCACGGTGTAC 58.139 50.000 8.17 4.12 39.64 2.90
700 707 2.605837 TTTGAGTGCTTCACGGTGTA 57.394 45.000 8.17 0.00 39.64 2.90
702 709 2.605338 CCATTTTGAGTGCTTCACGGTG 60.605 50.000 0.56 0.56 39.64 4.94
703 710 1.608590 CCATTTTGAGTGCTTCACGGT 59.391 47.619 0.00 0.00 39.64 4.83
704 711 1.666888 GCCATTTTGAGTGCTTCACGG 60.667 52.381 0.00 0.00 39.64 4.94
705 712 1.267806 AGCCATTTTGAGTGCTTCACG 59.732 47.619 0.00 0.00 39.64 4.35
708 715 4.006319 AGACTAGCCATTTTGAGTGCTTC 58.994 43.478 0.00 0.00 35.34 3.86
709 716 4.006319 GAGACTAGCCATTTTGAGTGCTT 58.994 43.478 0.00 0.00 35.34 3.91
711 718 2.349886 CGAGACTAGCCATTTTGAGTGC 59.650 50.000 0.00 0.00 0.00 4.40
713 720 3.963428 ACGAGACTAGCCATTTTGAGT 57.037 42.857 0.00 0.00 0.00 3.41
715 722 4.537135 AGAACGAGACTAGCCATTTTGA 57.463 40.909 0.00 0.00 0.00 2.69
716 723 4.093556 GGAAGAACGAGACTAGCCATTTTG 59.906 45.833 0.00 0.00 0.00 2.44
717 724 4.254492 GGAAGAACGAGACTAGCCATTTT 58.746 43.478 0.00 0.00 0.00 1.82
718 725 3.369576 GGGAAGAACGAGACTAGCCATTT 60.370 47.826 0.00 0.00 0.00 2.32
723 743 2.231721 ACTTGGGAAGAACGAGACTAGC 59.768 50.000 0.00 0.00 0.00 3.42
736 756 6.542821 AGATCACTTAATTCACACTTGGGAA 58.457 36.000 0.00 0.00 42.30 3.97
738 758 6.176183 AGAGATCACTTAATTCACACTTGGG 58.824 40.000 0.00 0.00 0.00 4.12
740 760 9.956720 AAAAAGAGATCACTTAATTCACACTTG 57.043 29.630 5.79 0.00 0.00 3.16
849 878 3.168193 CGATTGGTAATTCAACGTTGCC 58.832 45.455 23.47 17.70 32.68 4.52
914 945 4.003648 GGAGGCGATCTCTGAAAAAGAAA 58.996 43.478 6.25 0.00 42.10 2.52
915 946 3.007940 TGGAGGCGATCTCTGAAAAAGAA 59.992 43.478 6.25 0.00 42.10 2.52
916 947 2.567169 TGGAGGCGATCTCTGAAAAAGA 59.433 45.455 6.25 0.00 42.10 2.52
917 948 2.977914 TGGAGGCGATCTCTGAAAAAG 58.022 47.619 6.25 0.00 42.10 2.27
918 949 3.634397 ATGGAGGCGATCTCTGAAAAA 57.366 42.857 6.25 0.00 42.10 1.94
919 950 4.963318 ATATGGAGGCGATCTCTGAAAA 57.037 40.909 6.25 0.00 42.10 2.29
955 986 0.522626 TGATTTCACCAGCACGCATG 59.477 50.000 0.00 0.00 0.00 4.06
1013 1045 3.459969 AGAAGGGACAACTTGAGGAACTT 59.540 43.478 0.00 0.00 41.55 2.66
1091 1126 3.219281 ACCAACACAGCGAGGTAAATTT 58.781 40.909 0.00 0.00 31.32 1.82
1113 1148 7.148641 ACCTGTGCACTAGAATAAATCGATAG 58.851 38.462 19.41 0.45 0.00 2.08
1197 1294 1.078143 GTCAGTGCCCCATCCTGAC 60.078 63.158 3.56 3.56 45.69 3.51
1329 1426 1.299773 CTGAAGATCGCCGGAGAGC 60.300 63.158 16.23 16.23 0.00 4.09
1669 1770 3.088500 CTTTGGCGCGTGCTCTAGC 62.089 63.158 21.89 3.88 42.25 3.42
1713 1814 1.979155 CAGCAGGGACAGAGACCGA 60.979 63.158 0.00 0.00 0.00 4.69
1760 1861 2.103736 GCCGTCGTACCTGTAGGC 59.896 66.667 0.00 0.00 39.32 3.93
1804 1905 1.202417 TGAATGATCTTCGCCTCCGAC 60.202 52.381 0.00 0.00 44.30 4.79
1879 1980 3.715097 GCTCTGCTCCTGGTGCCT 61.715 66.667 17.31 0.00 0.00 4.75
1966 2067 5.559148 TTGAGCAAAATTTGGTTATGGGT 57.441 34.783 11.89 0.00 42.23 4.51
1973 2074 5.927819 TGGAGAAATTGAGCAAAATTTGGT 58.072 33.333 10.40 10.40 45.34 3.67
1974 2075 5.410439 CCTGGAGAAATTGAGCAAAATTTGG 59.590 40.000 12.48 5.40 39.31 3.28
1975 2076 5.106830 GCCTGGAGAAATTGAGCAAAATTTG 60.107 40.000 12.48 0.57 39.31 2.32
1981 2087 2.592102 AGCCTGGAGAAATTGAGCAA 57.408 45.000 0.00 0.00 0.00 3.91
2022 2128 0.392706 TGGCATTATCGACGGCATCT 59.607 50.000 0.00 0.00 0.00 2.90
2027 2133 2.154854 ACAGATGGCATTATCGACGG 57.845 50.000 0.00 0.00 32.33 4.79
2028 2134 3.859961 GGATACAGATGGCATTATCGACG 59.140 47.826 0.00 0.00 32.33 5.12
2220 2333 3.708220 CTGAGGTCCTTCTCCGCGC 62.708 68.421 0.00 0.00 33.04 6.86
2279 2392 3.207669 GGCGATGGCTTGCTCCAG 61.208 66.667 0.00 0.00 39.89 3.86
2331 2444 0.741221 GCTAGTCCCAACAAGAGCCG 60.741 60.000 0.00 0.00 0.00 5.52
2476 2590 7.503521 AAAATTTATTGCAACCAATTTCCGT 57.496 28.000 21.94 10.64 41.68 4.69
2508 2622 9.288576 AGATGTGAATTAGACAAATTGAACAGA 57.711 29.630 0.00 0.00 37.93 3.41
2541 2655 8.739972 GGAGCTTAGATTTGACATCCTTAAAAA 58.260 33.333 0.00 0.00 0.00 1.94
2542 2656 7.339466 GGGAGCTTAGATTTGACATCCTTAAAA 59.661 37.037 0.00 0.00 0.00 1.52
2543 2657 6.828785 GGGAGCTTAGATTTGACATCCTTAAA 59.171 38.462 0.00 0.00 0.00 1.52
2544 2658 6.069673 TGGGAGCTTAGATTTGACATCCTTAA 60.070 38.462 0.00 0.00 0.00 1.85
2545 2659 5.428457 TGGGAGCTTAGATTTGACATCCTTA 59.572 40.000 0.00 0.00 0.00 2.69
2546 2660 4.228210 TGGGAGCTTAGATTTGACATCCTT 59.772 41.667 0.00 0.00 0.00 3.36
2547 2661 3.782523 TGGGAGCTTAGATTTGACATCCT 59.217 43.478 0.00 0.00 0.00 3.24
2548 2662 3.879892 GTGGGAGCTTAGATTTGACATCC 59.120 47.826 0.00 0.00 0.00 3.51
2549 2663 4.517285 TGTGGGAGCTTAGATTTGACATC 58.483 43.478 0.00 0.00 0.00 3.06
2550 2664 4.574674 TGTGGGAGCTTAGATTTGACAT 57.425 40.909 0.00 0.00 0.00 3.06
2551 2665 4.365514 TTGTGGGAGCTTAGATTTGACA 57.634 40.909 0.00 0.00 0.00 3.58
2552 2666 5.904362 ATTTGTGGGAGCTTAGATTTGAC 57.096 39.130 0.00 0.00 0.00 3.18
2557 2671 9.401058 GCATTATATATTTGTGGGAGCTTAGAT 57.599 33.333 0.00 0.00 0.00 1.98
2558 2672 8.382405 TGCATTATATATTTGTGGGAGCTTAGA 58.618 33.333 0.00 0.00 0.00 2.10
2559 2673 8.565896 TGCATTATATATTTGTGGGAGCTTAG 57.434 34.615 0.00 0.00 0.00 2.18
2560 2674 7.611467 CCTGCATTATATATTTGTGGGAGCTTA 59.389 37.037 0.00 0.00 0.00 3.09
2561 2675 6.435277 CCTGCATTATATATTTGTGGGAGCTT 59.565 38.462 0.00 0.00 0.00 3.74
2562 2676 5.948162 CCTGCATTATATATTTGTGGGAGCT 59.052 40.000 0.00 0.00 0.00 4.09
2563 2677 5.945784 TCCTGCATTATATATTTGTGGGAGC 59.054 40.000 0.00 0.00 0.00 4.70
2564 2678 7.448161 TGTTCCTGCATTATATATTTGTGGGAG 59.552 37.037 0.00 0.00 0.00 4.30
2565 2679 7.293828 TGTTCCTGCATTATATATTTGTGGGA 58.706 34.615 0.00 0.28 0.00 4.37
2566 2680 7.523293 TGTTCCTGCATTATATATTTGTGGG 57.477 36.000 0.00 0.00 0.00 4.61
2567 2681 8.849168 TCTTGTTCCTGCATTATATATTTGTGG 58.151 33.333 0.00 0.00 0.00 4.17
2575 2689 9.995003 TTTTTGTTTCTTGTTCCTGCATTATAT 57.005 25.926 0.00 0.00 0.00 0.86
2626 2740 3.817084 ACATGATGTCCACTCTGTTTGTG 59.183 43.478 0.00 0.00 35.39 3.33
2627 2741 4.067896 GACATGATGTCCACTCTGTTTGT 58.932 43.478 14.48 0.00 41.37 2.83
2628 2742 4.067192 TGACATGATGTCCACTCTGTTTG 58.933 43.478 21.68 0.00 46.40 2.93
2629 2743 4.067896 GTGACATGATGTCCACTCTGTTT 58.932 43.478 21.68 0.00 46.40 2.83
2630 2744 3.071457 TGTGACATGATGTCCACTCTGTT 59.929 43.478 21.68 0.00 46.40 3.16
2631 2745 2.634453 TGTGACATGATGTCCACTCTGT 59.366 45.455 21.68 0.00 46.40 3.41
2632 2746 3.323751 TGTGACATGATGTCCACTCTG 57.676 47.619 21.68 0.00 46.40 3.35
2633 2747 3.773667 AGATGTGACATGATGTCCACTCT 59.226 43.478 21.68 16.30 46.40 3.24
2634 2748 4.134379 AGATGTGACATGATGTCCACTC 57.866 45.455 21.68 14.56 46.40 3.51
2635 2749 4.958581 TCTAGATGTGACATGATGTCCACT 59.041 41.667 21.68 17.70 46.40 4.00
2636 2750 5.268118 TCTAGATGTGACATGATGTCCAC 57.732 43.478 21.68 18.43 46.40 4.02
2637 2751 5.850614 CATCTAGATGTGACATGATGTCCA 58.149 41.667 22.42 18.26 46.40 4.02
2651 2765 6.276847 GGTTTGTCTAGGACACATCTAGATG 58.723 44.000 27.63 27.63 42.60 2.90
2652 2766 5.364157 GGGTTTGTCTAGGACACATCTAGAT 59.636 44.000 0.00 0.00 42.60 1.98
2653 2767 4.710375 GGGTTTGTCTAGGACACATCTAGA 59.290 45.833 0.00 0.00 42.60 2.43
2654 2768 4.466370 TGGGTTTGTCTAGGACACATCTAG 59.534 45.833 0.00 0.00 42.60 2.43
2655 2769 4.422057 TGGGTTTGTCTAGGACACATCTA 58.578 43.478 0.00 0.00 42.60 1.98
2656 2770 3.248024 TGGGTTTGTCTAGGACACATCT 58.752 45.455 0.00 0.00 42.60 2.90
2657 2771 3.695830 TGGGTTTGTCTAGGACACATC 57.304 47.619 0.00 0.00 42.60 3.06
2658 2772 5.975988 ATATGGGTTTGTCTAGGACACAT 57.024 39.130 0.00 8.51 42.60 3.21
2659 2773 5.772393 AATATGGGTTTGTCTAGGACACA 57.228 39.130 0.00 0.00 42.60 3.72
2660 2774 5.944007 ACAAATATGGGTTTGTCTAGGACAC 59.056 40.000 0.00 0.00 46.32 3.67
2661 2775 6.134535 ACAAATATGGGTTTGTCTAGGACA 57.865 37.500 0.00 0.00 46.32 4.02
2671 2785 7.967908 TGTTCCATACAAACAAATATGGGTTT 58.032 30.769 9.77 0.45 45.46 3.27
2672 2786 7.546250 TGTTCCATACAAACAAATATGGGTT 57.454 32.000 9.77 0.00 45.46 4.11
2673 2787 7.453126 TCTTGTTCCATACAAACAAATATGGGT 59.547 33.333 9.77 0.00 45.69 4.51
2674 2788 7.835822 TCTTGTTCCATACAAACAAATATGGG 58.164 34.615 9.77 0.00 45.69 4.00
2675 2789 9.874205 ATTCTTGTTCCATACAAACAAATATGG 57.126 29.630 4.22 4.22 45.69 2.74
2850 2966 4.579384 CCCTGGTGCGGTTGGTGT 62.579 66.667 0.00 0.00 0.00 4.16
2857 2973 2.203070 GATGCTACCCTGGTGCGG 60.203 66.667 0.00 0.00 0.00 5.69
2859 2975 0.464554 GAAGGATGCTACCCTGGTGC 60.465 60.000 0.00 1.72 33.55 5.01
2906 3024 9.578439 CGATGCTATGATATGAGTCAATAAGAA 57.422 33.333 0.00 0.00 0.00 2.52
2924 3042 9.322773 CATTATGATTGTATTCCTCGATGCTAT 57.677 33.333 0.00 0.00 0.00 2.97
2936 3054 7.119699 CGGGTATGCACTCATTATGATTGTATT 59.880 37.037 17.66 6.28 35.02 1.89
2947 3065 0.908910 TGGTCGGGTATGCACTCATT 59.091 50.000 0.00 0.00 34.22 2.57
2957 3075 1.453015 GGCATGCATTGGTCGGGTA 60.453 57.895 21.36 0.00 0.00 3.69
2962 3080 4.023707 GTGTATTCTAGGCATGCATTGGTC 60.024 45.833 21.36 0.00 0.00 4.02
2966 3084 4.525996 TGTGTGTATTCTAGGCATGCATT 58.474 39.130 21.36 9.67 0.00 3.56
2967 3085 4.132336 CTGTGTGTATTCTAGGCATGCAT 58.868 43.478 21.36 16.31 0.00 3.96
2973 3091 2.678336 GTTGGCTGTGTGTATTCTAGGC 59.322 50.000 0.00 0.00 34.85 3.93
2974 3092 3.684788 GTGTTGGCTGTGTGTATTCTAGG 59.315 47.826 0.00 0.00 0.00 3.02
2975 3093 4.314961 TGTGTTGGCTGTGTGTATTCTAG 58.685 43.478 0.00 0.00 0.00 2.43
2979 3097 3.445450 TGTTTGTGTTGGCTGTGTGTATT 59.555 39.130 0.00 0.00 0.00 1.89
3001 3119 0.606401 CCTTGCCGGTGTGATCTTGT 60.606 55.000 1.90 0.00 0.00 3.16
3009 3137 1.973281 CATTGCTCCTTGCCGGTGT 60.973 57.895 1.90 0.00 42.00 4.16
3011 3139 3.064324 GCATTGCTCCTTGCCGGT 61.064 61.111 1.90 0.00 42.00 5.28
3044 3172 5.067283 ACTGTTTTCATTGCTTCGGTAGTTT 59.933 36.000 0.00 0.00 0.00 2.66
3045 3173 4.578928 ACTGTTTTCATTGCTTCGGTAGTT 59.421 37.500 0.00 0.00 0.00 2.24
3046 3174 4.024048 CACTGTTTTCATTGCTTCGGTAGT 60.024 41.667 0.00 0.00 0.00 2.73
3047 3175 4.213270 TCACTGTTTTCATTGCTTCGGTAG 59.787 41.667 0.00 0.00 31.75 3.18
3048 3176 4.130857 TCACTGTTTTCATTGCTTCGGTA 58.869 39.130 0.00 0.00 31.75 4.02
3049 3177 2.948979 TCACTGTTTTCATTGCTTCGGT 59.051 40.909 0.00 0.00 31.75 4.69
3050 3178 3.624326 TCACTGTTTTCATTGCTTCGG 57.376 42.857 0.00 0.00 31.75 4.30
3051 3179 4.790140 GCTATCACTGTTTTCATTGCTTCG 59.210 41.667 0.00 0.00 31.75 3.79
3052 3180 4.790140 CGCTATCACTGTTTTCATTGCTTC 59.210 41.667 0.00 0.00 31.75 3.86
3055 3183 3.119849 ACCGCTATCACTGTTTTCATTGC 60.120 43.478 0.00 0.00 31.75 3.56
3057 3185 4.154195 GTCACCGCTATCACTGTTTTCATT 59.846 41.667 0.00 0.00 0.00 2.57
3067 3195 0.597637 CCGATGGTCACCGCTATCAC 60.598 60.000 0.00 0.00 0.00 3.06
3074 3202 3.892740 TTGGTGCCGATGGTCACCG 62.893 63.158 18.18 0.00 45.78 4.94
3075 3203 2.033448 TTGGTGCCGATGGTCACC 59.967 61.111 17.22 17.22 44.33 4.02
3077 3205 2.033448 GGTTGGTGCCGATGGTCA 59.967 61.111 0.00 0.00 0.00 4.02
3122 3250 4.803613 GTGACGCTTTTGGAGAACATTTTT 59.196 37.500 0.00 0.00 0.00 1.94
3139 3267 1.183549 TCCCTTTCTAGAGGTGACGC 58.816 55.000 0.00 0.00 34.88 5.19
3142 3270 2.824341 GTCGTTCCCTTTCTAGAGGTGA 59.176 50.000 0.00 0.00 34.88 4.02
3144 3272 2.561858 GTGTCGTTCCCTTTCTAGAGGT 59.438 50.000 0.00 0.00 34.88 3.85
3149 3277 0.604578 CCCGTGTCGTTCCCTTTCTA 59.395 55.000 0.00 0.00 0.00 2.10
3164 3292 2.797278 GGATCCAGCGATGACCCGT 61.797 63.158 6.95 0.00 0.00 5.28
3166 3294 0.815615 GTTGGATCCAGCGATGACCC 60.816 60.000 15.53 0.11 0.00 4.46
3169 3297 2.029918 CGATAGTTGGATCCAGCGATGA 60.030 50.000 25.05 12.18 32.33 2.92
3177 3305 4.402056 TTGACCTTCGATAGTTGGATCC 57.598 45.455 4.20 4.20 34.64 3.36
3256 3384 3.302480 GCGTTCTATGCGTCATTACCTTG 60.302 47.826 0.00 0.00 0.00 3.61
3264 3392 1.809619 GCTGGCGTTCTATGCGTCA 60.810 57.895 0.00 0.00 41.86 4.35
3280 3408 3.016736 GTGTGTTATACCTGGCAATGCT 58.983 45.455 4.82 0.00 0.00 3.79
3281 3409 3.016736 AGTGTGTTATACCTGGCAATGC 58.983 45.455 0.00 0.00 0.00 3.56
3303 3431 6.206634 GGGTGAAAAATCTTATGTGTGACTCA 59.793 38.462 0.00 0.00 0.00 3.41
3308 3436 5.720371 TGGGGTGAAAAATCTTATGTGTG 57.280 39.130 0.00 0.00 0.00 3.82
3316 3444 5.660864 TCTCAAGTTTTGGGGTGAAAAATCT 59.339 36.000 0.00 0.00 0.00 2.40
3322 3450 2.661718 GGTCTCAAGTTTTGGGGTGAA 58.338 47.619 0.00 0.00 0.00 3.18
3329 3457 3.064931 GAGTACCCGGTCTCAAGTTTTG 58.935 50.000 0.00 0.00 0.00 2.44
3330 3458 2.701951 TGAGTACCCGGTCTCAAGTTTT 59.298 45.455 15.54 0.00 37.69 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.