Multiple sequence alignment - TraesCS2D01G369800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G369800 chr2D 100.000 5117 0 0 1 5117 474500947 474506063 0.000000e+00 9450.0
1 TraesCS2D01G369800 chr2A 91.816 4472 249 43 9 4406 616978809 616983237 0.000000e+00 6122.0
2 TraesCS2D01G369800 chr2A 91.803 732 42 8 4399 5117 616983462 616984188 0.000000e+00 1003.0
3 TraesCS2D01G369800 chr2B 96.324 2421 64 13 1994 4406 555322173 555324576 0.000000e+00 3954.0
4 TraesCS2D01G369800 chr2B 96.034 1185 22 12 771 1930 555320990 555322174 0.000000e+00 1905.0
5 TraesCS2D01G369800 chr2B 92.837 726 29 14 4399 5117 555324831 555325540 0.000000e+00 1031.0
6 TraesCS2D01G369800 chr2B 90.061 654 37 13 121 771 555320312 555320940 0.000000e+00 822.0
7 TraesCS2D01G369800 chr5A 76.364 220 47 4 4901 5115 691406942 691406723 4.190000e-21 113.0
8 TraesCS2D01G369800 chr3D 86.747 83 4 5 5038 5115 73766715 73766635 9.130000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G369800 chr2D 474500947 474506063 5116 False 9450.0 9450 100.0000 1 5117 1 chr2D.!!$F1 5116
1 TraesCS2D01G369800 chr2A 616978809 616984188 5379 False 3562.5 6122 91.8095 9 5117 2 chr2A.!!$F1 5108
2 TraesCS2D01G369800 chr2B 555320312 555325540 5228 False 1928.0 3954 93.8140 121 5117 4 chr2B.!!$F1 4996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 484 0.598065 GTGCACATTGGGAACAGACC 59.402 55.0 13.17 0.0 44.54 3.85 F
612 628 0.598065 AAAGCCCGCACATTGTCTTC 59.402 50.0 0.00 0.0 0.00 2.87 F
1960 2069 1.412079 TTTCAATGCTGTGGCCTGTT 58.588 45.0 3.32 0.0 37.74 3.16 F
1970 2079 0.171903 GTGGCCTGTTGCATAAGCTG 59.828 55.0 3.32 0.0 43.89 4.24 F
2976 3097 0.984995 GTAAGGCTTCAGTGGGAGGT 59.015 55.0 1.30 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2046 0.896923 GGCCACAGCATTGAAATGGA 59.103 50.000 0.00 0.0 42.56 3.41 R
1970 2079 1.459450 TTATTTGAGGGGCTGAACGC 58.541 50.000 0.00 0.0 38.13 4.84 R
3039 3160 0.036010 GCTCTTGCTTCTGCCACCTA 60.036 55.000 0.00 0.0 38.71 3.08 R
3560 3681 1.416401 ACTGTGTCAACTGGGACGATT 59.584 47.619 0.00 0.0 40.72 3.34 R
4935 5341 0.531200 GGTTGCGCTACCTAGACAGT 59.469 55.000 30.09 0.0 35.23 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.176889 GAAGCCCACTAGTGACCAGTA 58.823 52.381 24.68 0.00 0.00 2.74
38 39 3.990369 AGCCCACTAGTGACCAGTATTA 58.010 45.455 24.68 0.00 0.00 0.98
44 45 6.761714 CCCACTAGTGACCAGTATTAATGTTC 59.238 42.308 24.68 0.00 0.00 3.18
85 86 5.799213 CAGTCATTTAGGTTCTTCTGGAGT 58.201 41.667 0.00 0.00 0.00 3.85
143 144 6.309494 GCCCTCGTGATTTTGTTATTTTTACC 59.691 38.462 0.00 0.00 0.00 2.85
200 201 3.063180 CAGGCAGATTTCTTGACTTAGCG 59.937 47.826 0.00 0.00 0.00 4.26
205 206 5.334105 GCAGATTTCTTGACTTAGCGTTTGA 60.334 40.000 0.00 0.00 0.00 2.69
252 254 6.919775 TTTGAAAGGAATAAAAATCCGGGA 57.080 33.333 0.00 0.00 42.03 5.14
255 257 5.362430 TGAAAGGAATAAAAATCCGGGATGG 59.638 40.000 10.96 0.00 42.03 3.51
272 274 1.004200 GGTGGTGTTACTGGGTCCG 60.004 63.158 0.00 0.00 0.00 4.79
296 302 1.826385 ACATTGTACCTCAGGCTTGC 58.174 50.000 0.00 0.00 0.00 4.01
322 328 3.991773 TGAAAGTGTGTTGCTACGATACC 59.008 43.478 0.00 0.00 0.00 2.73
369 375 3.574614 GTTGCGCACCAAATTACTCAAT 58.425 40.909 11.12 0.00 34.68 2.57
370 376 3.485947 TGCGCACCAAATTACTCAATC 57.514 42.857 5.66 0.00 0.00 2.67
421 428 7.717875 TGTAATATGGTTGCTCCCTATTTGTAC 59.282 37.037 11.58 0.00 37.84 2.90
475 484 0.598065 GTGCACATTGGGAACAGACC 59.402 55.000 13.17 0.00 44.54 3.85
564 580 3.127030 CCCTTTCGTTCCTTGAATGCTAC 59.873 47.826 0.00 0.00 0.00 3.58
577 593 1.264749 ATGCTACGGCTCCTGGACAA 61.265 55.000 0.00 0.00 39.59 3.18
612 628 0.598065 AAAGCCCGCACATTGTCTTC 59.402 50.000 0.00 0.00 0.00 2.87
624 640 5.615708 CACATTGTCTTCAAGAACTCATCG 58.384 41.667 0.00 0.00 36.97 3.84
668 689 3.680642 ACAGCATGCACAATTATCGAC 57.319 42.857 21.98 0.00 42.53 4.20
681 702 7.815068 GCACAATTATCGACTAGAACATATCCT 59.185 37.037 0.00 0.00 0.00 3.24
749 770 3.211045 ACAATAATATCCCACACACGCC 58.789 45.455 0.00 0.00 0.00 5.68
951 1030 3.054065 AGAAGAAGTTCATCATGACCCCC 60.054 47.826 10.51 0.00 34.82 5.40
1107 1186 9.912634 CAATCTTGTAACAATGGAGTTATGTTT 57.087 29.630 0.00 0.00 38.22 2.83
1108 1187 9.912634 AATCTTGTAACAATGGAGTTATGTTTG 57.087 29.630 0.00 0.00 38.22 2.93
1573 1682 7.024768 GCTCGCATTTAACTTATACCAAACAA 58.975 34.615 0.00 0.00 0.00 2.83
1723 1832 2.380064 ACCACTTTCTTCATGCCCAA 57.620 45.000 0.00 0.00 0.00 4.12
1816 1925 5.408299 GGGCAAAACTGGATCAAAATTGTAC 59.592 40.000 0.00 0.00 0.00 2.90
1937 2046 8.807948 AGCACCTCACTTATGTAATTTACAAT 57.192 30.769 12.96 5.35 42.76 2.71
1960 2069 1.412079 TTTCAATGCTGTGGCCTGTT 58.588 45.000 3.32 0.00 37.74 3.16
1970 2079 0.171903 GTGGCCTGTTGCATAAGCTG 59.828 55.000 3.32 0.00 43.89 4.24
1988 2097 3.168773 GCGTTCAGCCCCTCAAATA 57.831 52.632 0.00 0.00 40.81 1.40
2027 2136 6.313658 CCCTTGTTTTTAGCTGAATTAATGGC 59.686 38.462 0.00 0.00 0.00 4.40
2048 2157 2.665519 CGTGTGTTGGTAGCATTGAAGC 60.666 50.000 0.00 0.00 0.00 3.86
2068 2177 3.119245 AGCGCCTAAATGAGTCTTAACGA 60.119 43.478 2.29 0.00 0.00 3.85
2134 2244 6.817765 TGATATGTTTGTGGAACTTCTTCC 57.182 37.500 0.00 0.00 45.89 3.46
2189 2299 4.443598 GCTCCGAGGGTTCTTAATCTCAAT 60.444 45.833 0.00 0.00 0.00 2.57
2442 2552 5.102313 CACTTCCTTCCTTTTGTTGACAAC 58.898 41.667 11.54 11.54 35.28 3.32
2705 2826 7.438757 TGAAATTGACATATGCCATAATTGTGC 59.561 33.333 1.58 0.00 0.00 4.57
2976 3097 0.984995 GTAAGGCTTCAGTGGGAGGT 59.015 55.000 1.30 0.00 0.00 3.85
3275 3396 1.050988 ACGGCATGGCAGGAGATAGT 61.051 55.000 20.37 3.15 0.00 2.12
3301 3422 8.579850 AGATGATTGTTGCTTAGGTAAATTGA 57.420 30.769 0.00 0.00 0.00 2.57
3444 3565 2.546494 CGCCGGGGCTGATTTCATC 61.546 63.158 5.22 0.00 39.32 2.92
3462 3583 7.595819 TTTCATCATTGTTCCAAGTAGGTTT 57.404 32.000 0.00 0.00 39.02 3.27
3513 3634 4.841246 GGGATGAGATATGGAGTGGTAAGT 59.159 45.833 0.00 0.00 0.00 2.24
3537 3658 2.289820 TCCGACTCGATCAATTAGACGG 59.710 50.000 14.50 14.50 45.64 4.79
3560 3681 6.844254 GGTAAATTTGACCGCACAAGTATTA 58.156 36.000 0.00 0.00 0.00 0.98
3587 3708 2.213499 CCAGTTGACACAGTCCTTGAC 58.787 52.381 0.00 0.00 0.00 3.18
3702 3823 8.500773 GTTCAATGTCGAGGTAAAGAACAATAA 58.499 33.333 0.00 0.00 35.47 1.40
3911 4038 1.351017 CTTGGAAGGTGGGCAGAACTA 59.649 52.381 0.00 0.00 0.00 2.24
3913 4040 1.281867 TGGAAGGTGGGCAGAACTATG 59.718 52.381 0.00 0.00 0.00 2.23
3947 4075 9.983024 TTCCTATTTACCCTTAACATGAATGAA 57.017 29.630 0.00 0.00 0.00 2.57
3961 4089 7.756395 ACATGAATGAATTTCTTGTCTGTCT 57.244 32.000 0.00 0.00 44.88 3.41
3962 4090 8.174733 ACATGAATGAATTTCTTGTCTGTCTT 57.825 30.769 0.00 0.00 44.88 3.01
4026 4154 0.401738 CAAAGAAGTGGGAGGAGGCA 59.598 55.000 0.00 0.00 0.00 4.75
4058 4186 0.968393 GGAGTCGAGGGAAGTCAGCT 60.968 60.000 0.00 0.00 0.00 4.24
4286 4414 4.458256 TCCTTATGTAGGTCGTGGGATA 57.542 45.455 0.00 0.00 45.03 2.59
4390 4519 1.080569 GTGCCATTTGCCTCCGTTG 60.081 57.895 0.00 0.00 40.16 4.10
4533 4923 8.454106 CAACAACCAATCCACAATTTAAAAACA 58.546 29.630 0.00 0.00 0.00 2.83
4566 4956 6.706055 TCATGATTGTCGTTTTACTGTCTC 57.294 37.500 0.00 0.00 0.00 3.36
4567 4957 6.220201 TCATGATTGTCGTTTTACTGTCTCA 58.780 36.000 0.00 0.00 0.00 3.27
4568 4958 6.704050 TCATGATTGTCGTTTTACTGTCTCAA 59.296 34.615 0.00 0.00 0.00 3.02
4713 5103 9.907229 AGAACTCGGGAAGAAGATATAATTTTT 57.093 29.630 0.00 0.00 0.00 1.94
4769 5159 2.224281 TGGTGCGATTGTTCTCTTGACT 60.224 45.455 0.00 0.00 0.00 3.41
4812 5202 1.073199 AGCAGCCCAGCTAACGTTT 59.927 52.632 5.91 0.00 44.50 3.60
4829 5219 9.622004 GCTAACGTTTTCAGCTGTATATATAGA 57.378 33.333 14.67 0.00 32.46 1.98
4927 5323 3.825143 ATTCCTTGTGTTTTTGCAGCT 57.175 38.095 0.00 0.00 0.00 4.24
4928 5324 2.582728 TCCTTGTGTTTTTGCAGCTG 57.417 45.000 10.11 10.11 0.00 4.24
4929 5325 2.098614 TCCTTGTGTTTTTGCAGCTGA 58.901 42.857 20.43 0.00 0.00 4.26
4935 5341 0.459489 GTTTTTGCAGCTGACACCCA 59.541 50.000 20.43 1.69 0.00 4.51
4981 5387 3.535561 CGTCTGAGGCTTATGTTGGATT 58.464 45.455 0.00 0.00 0.00 3.01
4985 5391 2.288666 GAGGCTTATGTTGGATTCGCA 58.711 47.619 0.00 0.00 0.00 5.10
4992 5398 0.243365 TGTTGGATTCGCAACATGCC 59.757 50.000 13.39 0.00 41.12 4.40
5015 5421 4.779966 TCGACGCCTCTCCTCGCT 62.780 66.667 0.00 0.00 0.00 4.93
5023 5429 3.429080 CTCTCCTCGCTGCAGGCTC 62.429 68.421 17.12 0.00 39.13 4.70
5099 5508 2.159114 GGTGTGTTTGTGTTGATGCCTT 60.159 45.455 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.103263 GGTCACTAGTGGGCTTCCATAG 59.897 54.545 22.48 0.00 43.38 2.23
11 12 2.116238 GGTCACTAGTGGGCTTCCATA 58.884 52.381 22.48 0.00 43.38 2.74
12 13 0.912486 GGTCACTAGTGGGCTTCCAT 59.088 55.000 22.48 0.00 43.38 3.41
13 14 0.472925 TGGTCACTAGTGGGCTTCCA 60.473 55.000 22.48 17.99 38.44 3.53
14 15 0.250513 CTGGTCACTAGTGGGCTTCC 59.749 60.000 22.48 15.99 0.00 3.46
15 16 0.977395 ACTGGTCACTAGTGGGCTTC 59.023 55.000 22.48 8.55 0.00 3.86
16 17 2.320681 TACTGGTCACTAGTGGGCTT 57.679 50.000 22.48 6.60 0.00 4.35
17 18 2.552093 ATACTGGTCACTAGTGGGCT 57.448 50.000 22.48 4.20 0.00 5.19
18 19 4.748277 TTAATACTGGTCACTAGTGGGC 57.252 45.455 22.48 14.97 0.00 5.36
19 20 6.235231 ACATTAATACTGGTCACTAGTGGG 57.765 41.667 22.48 12.44 0.00 4.61
38 39 9.167311 CTGCCTAGTACAAAAGAATAGAACATT 57.833 33.333 0.00 0.00 0.00 2.71
44 45 8.723942 AATGACTGCCTAGTACAAAAGAATAG 57.276 34.615 0.00 0.00 37.25 1.73
48 49 7.103641 CCTAAATGACTGCCTAGTACAAAAGA 58.896 38.462 0.00 0.00 37.25 2.52
53 54 5.720041 AGAACCTAAATGACTGCCTAGTACA 59.280 40.000 0.00 0.00 37.25 2.90
56 57 5.485708 AGAAGAACCTAAATGACTGCCTAGT 59.514 40.000 0.00 0.00 40.66 2.57
61 62 4.579869 TCCAGAAGAACCTAAATGACTGC 58.420 43.478 0.00 0.00 0.00 4.40
62 63 5.799213 ACTCCAGAAGAACCTAAATGACTG 58.201 41.667 0.00 0.00 0.00 3.51
99 100 2.632377 GCATCCGAGGTGAGATGAAAA 58.368 47.619 4.25 0.00 42.04 2.29
100 101 1.134401 GGCATCCGAGGTGAGATGAAA 60.134 52.381 4.25 0.00 42.04 2.69
103 104 1.070445 GGGCATCCGAGGTGAGATG 59.930 63.158 0.00 0.00 42.30 2.90
109 110 3.461773 CACGAGGGCATCCGAGGT 61.462 66.667 0.00 0.00 38.33 3.85
110 111 2.032860 AATCACGAGGGCATCCGAGG 62.033 60.000 0.00 0.00 38.33 4.63
143 144 3.754850 ACATCACAACACATCCTGACATG 59.245 43.478 0.00 0.00 0.00 3.21
200 201 8.905702 CAAATAGCAGTGTACTCAAATTCAAAC 58.094 33.333 0.00 0.00 0.00 2.93
252 254 0.696501 GGACCCAGTAACACCACCAT 59.303 55.000 0.00 0.00 0.00 3.55
255 257 0.601841 CACGGACCCAGTAACACCAC 60.602 60.000 0.00 0.00 0.00 4.16
272 274 3.412386 AGCCTGAGGTACAATGTTTCAC 58.588 45.455 0.00 0.00 0.00 3.18
322 328 7.591057 CCCATGCAATGTAAGTAATAAATGTCG 59.409 37.037 0.00 0.00 44.81 4.35
407 414 6.018994 CGTCAAATACAGTACAAATAGGGAGC 60.019 42.308 0.00 0.00 0.00 4.70
475 484 2.700897 CCTCCCTATAACCAGGACACTG 59.299 54.545 0.00 0.00 44.51 3.66
564 580 2.620251 TATCAATTGTCCAGGAGCCG 57.380 50.000 5.13 0.00 0.00 5.52
577 593 7.277760 GTGCGGGCTTTTATTTTTCTTATCAAT 59.722 33.333 0.00 0.00 0.00 2.57
612 628 2.416747 TGCCTTGTCGATGAGTTCTTG 58.583 47.619 0.00 0.00 0.00 3.02
624 640 3.004315 TCGAAAGAAACCAATGCCTTGTC 59.996 43.478 0.91 0.00 37.03 3.18
656 677 9.698309 AAGGATATGTTCTAGTCGATAATTGTG 57.302 33.333 0.00 0.00 0.00 3.33
681 702 6.493189 AAGGCAAAAAGGAAGTTCCATTAA 57.507 33.333 23.87 0.00 39.61 1.40
749 770 6.039047 CCCTGAACAGACCAATTATCATTCAG 59.961 42.308 18.13 18.13 39.23 3.02
793 864 4.471386 AGTACTAAGAGGTGGCACATGAAT 59.529 41.667 20.82 3.16 44.52 2.57
1108 1187 4.377021 TGTGTCTTATTCCGCATGGATAC 58.623 43.478 0.00 0.00 45.91 2.24
1169 1248 5.010213 GGTGCAGGAGTCCTACTAGAATTAG 59.990 48.000 12.53 0.00 29.64 1.73
1573 1682 8.428852 ACCAACAATTACCTAAAGAAGCAAAAT 58.571 29.630 0.00 0.00 0.00 1.82
1816 1925 2.267961 GTTCCAGTGGTAGGCCCG 59.732 66.667 9.54 0.00 35.15 6.13
1937 2046 0.896923 GGCCACAGCATTGAAATGGA 59.103 50.000 0.00 0.00 42.56 3.41
1970 2079 1.459450 TTATTTGAGGGGCTGAACGC 58.541 50.000 0.00 0.00 38.13 4.84
2027 2136 2.665519 GCTTCAATGCTACCAACACACG 60.666 50.000 0.00 0.00 0.00 4.49
2048 2157 5.968387 AATCGTTAAGACTCATTTAGGCG 57.032 39.130 0.00 0.00 38.81 5.52
2068 2177 4.957954 TGTGAATGTACTACCCTCGGTAAT 59.042 41.667 0.00 0.00 37.76 1.89
2134 2244 6.261603 TGCAGCCTAAAAGTGATATCAGATTG 59.738 38.462 5.42 0.00 0.00 2.67
2146 2256 2.450476 CCTCCAATGCAGCCTAAAAGT 58.550 47.619 0.00 0.00 0.00 2.66
2442 2552 9.911788 ATAAAACCTATGATGCATATTCCCTAG 57.088 33.333 0.00 0.00 0.00 3.02
2671 2792 8.715191 TGGCATATGTCAATTTCAAATAAACC 57.285 30.769 7.75 0.00 0.00 3.27
2693 2814 1.589727 GCCTGCGCACAATTATGGC 60.590 57.895 17.31 17.31 34.03 4.40
2773 2894 2.559668 TGGACTAACTGTAAGGACCACG 59.440 50.000 0.00 0.00 39.30 4.94
2976 3097 6.433093 GGTAATAACTGGCAAAAGAGGAGAAA 59.567 38.462 0.00 0.00 0.00 2.52
3039 3160 0.036010 GCTCTTGCTTCTGCCACCTA 60.036 55.000 0.00 0.00 38.71 3.08
3275 3396 9.679661 TCAATTTACCTAAGCAACAATCATCTA 57.320 29.630 0.00 0.00 0.00 1.98
3301 3422 2.166254 CTGTGCCCTGAAAAACACAACT 59.834 45.455 0.00 0.00 42.07 3.16
3513 3634 4.669318 GTCTAATTGATCGAGTCGGAACA 58.331 43.478 13.54 7.82 0.00 3.18
3537 3658 8.905103 ATTAATACTTGTGCGGTCAAATTTAC 57.095 30.769 0.00 0.00 0.00 2.01
3560 3681 1.416401 ACTGTGTCAACTGGGACGATT 59.584 47.619 0.00 0.00 40.72 3.34
3702 3823 6.029289 TTGCGAGCAAATACTTAGACCAAGT 61.029 40.000 8.17 0.00 40.67 3.16
4026 4154 1.187087 CGACTCCTAGGCCAAGAAGT 58.813 55.000 5.01 2.56 0.00 3.01
4234 4362 4.277476 TGTCTTGTTGAAATTCAGGTGGT 58.723 39.130 0.00 0.00 0.00 4.16
4235 4363 4.916983 TGTCTTGTTGAAATTCAGGTGG 57.083 40.909 0.00 0.00 0.00 4.61
4236 4364 5.894807 ACTTGTCTTGTTGAAATTCAGGTG 58.105 37.500 0.00 0.00 0.00 4.00
4286 4414 3.446516 GGACCACTACTTGACGAACCTAT 59.553 47.826 0.00 0.00 0.00 2.57
4390 4519 3.305608 CCCTTCTGTTCTTGATTTGGCAC 60.306 47.826 0.00 0.00 0.00 5.01
4533 4923 7.687941 AAACGACAATCATGATAAGAACCTT 57.312 32.000 9.04 0.00 0.00 3.50
4713 5103 1.742411 GCCAGCGGATTAGCACAAGTA 60.742 52.381 0.00 0.00 40.15 2.24
4829 5219 4.323417 TGGTCTATGCTTGTTCGTCAATT 58.677 39.130 0.00 0.00 35.35 2.32
4833 5223 2.271800 CCTGGTCTATGCTTGTTCGTC 58.728 52.381 0.00 0.00 0.00 4.20
4879 5269 6.006275 AGAAATAGTCACCAAGGCATGTAT 57.994 37.500 0.00 0.00 0.00 2.29
4929 5325 1.558233 GCTACCTAGACAGTGGGTGT 58.442 55.000 0.00 0.00 41.05 4.16
4935 5341 0.531200 GGTTGCGCTACCTAGACAGT 59.469 55.000 30.09 0.00 35.23 3.55
4981 5387 2.281692 AGCAGTGGCATGTTGCGA 60.282 55.556 13.43 0.00 46.21 5.10
4985 5391 2.029288 CGTCGAGCAGTGGCATGTT 61.029 57.895 0.00 0.00 44.61 2.71
5023 5429 0.620556 AAGTGGCCACATAGTCAGGG 59.379 55.000 36.39 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.