Multiple sequence alignment - TraesCS2D01G369400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G369400 chr2D 100.000 5347 0 0 1 5347 473586736 473592082 0.000000e+00 9875.0
1 TraesCS2D01G369400 chr2D 97.945 146 3 0 4663 4808 574901291 574901146 2.470000e-63 254.0
2 TraesCS2D01G369400 chr2A 94.882 1778 58 11 2875 4648 615525073 615526821 0.000000e+00 2748.0
3 TraesCS2D01G369400 chr2A 89.089 834 37 17 2045 2846 615524138 615524949 0.000000e+00 987.0
4 TraesCS2D01G369400 chr2A 90.704 710 38 18 561 1252 615522664 615523363 0.000000e+00 920.0
5 TraesCS2D01G369400 chr2A 92.883 548 29 4 4809 5347 615526805 615527351 0.000000e+00 787.0
6 TraesCS2D01G369400 chr2A 92.713 247 18 0 23 269 615522120 615522366 1.830000e-94 357.0
7 TraesCS2D01G369400 chr2A 79.541 567 62 30 1277 1803 615523417 615523969 6.590000e-94 355.0
8 TraesCS2D01G369400 chr2A 87.261 157 9 3 1856 2001 615523978 615524134 9.210000e-38 169.0
9 TraesCS2D01G369400 chr2A 78.261 207 21 9 299 495 615522362 615522554 1.570000e-20 111.0
10 TraesCS2D01G369400 chrUn 93.140 1793 64 23 2875 4648 75458082 75456330 0.000000e+00 2575.0
11 TraesCS2D01G369400 chrUn 92.883 548 30 3 4809 5347 75456346 75455799 0.000000e+00 787.0
12 TraesCS2D01G369400 chrUn 84.949 392 24 17 22 407 75460948 75460586 1.090000e-96 364.0
13 TraesCS2D01G369400 chrUn 89.189 259 8 9 2529 2783 75458508 75458266 6.730000e-79 305.0
14 TraesCS2D01G369400 chrUn 98.601 143 2 0 4663 4805 29972598 29972740 2.470000e-63 254.0
15 TraesCS2D01G369400 chrUn 96.875 64 2 0 2402 2465 75458596 75458533 2.040000e-19 108.0
16 TraesCS2D01G369400 chrUn 86.239 109 3 6 2045 2153 75458749 75458653 2.040000e-19 108.0
17 TraesCS2D01G369400 chrUn 98.333 60 1 0 2305 2364 75458653 75458594 7.320000e-19 106.0
18 TraesCS2D01G369400 chr2B 96.873 1471 46 0 2882 4352 553981176 553982646 0.000000e+00 2462.0
19 TraesCS2D01G369400 chr2B 84.017 1145 85 39 582 1677 553978757 553979852 0.000000e+00 1011.0
20 TraesCS2D01G369400 chr2B 93.144 598 28 5 2040 2633 553980089 553980677 0.000000e+00 865.0
21 TraesCS2D01G369400 chr2B 92.363 419 25 3 49 467 553978174 553978585 1.660000e-164 590.0
22 TraesCS2D01G369400 chr2B 93.333 180 11 1 4809 4988 553982854 553983032 1.140000e-66 265.0
23 TraesCS2D01G369400 chr2B 91.515 165 8 3 4484 4648 553982712 553982870 6.970000e-54 222.0
24 TraesCS2D01G369400 chr2B 90.798 163 11 2 1848 2006 553979933 553980095 1.170000e-51 215.0
25 TraesCS2D01G369400 chr2B 92.405 79 6 0 4370 4448 553982639 553982717 4.380000e-21 113.0
26 TraesCS2D01G369400 chr2B 94.000 50 1 2 1801 1850 46846076 46846123 2.070000e-09 75.0
27 TraesCS2D01G369400 chr3D 99.301 143 1 0 4663 4805 475128587 475128445 5.310000e-65 259.0
28 TraesCS2D01G369400 chr3D 96.000 50 1 1 1801 1850 523400325 523400373 4.440000e-11 80.5
29 TraesCS2D01G369400 chr7D 98.601 143 2 0 4663 4805 565189076 565188934 2.470000e-63 254.0
30 TraesCS2D01G369400 chr7D 97.917 144 3 0 4663 4806 2503758 2503901 3.200000e-62 250.0
31 TraesCS2D01G369400 chr5D 98.601 143 2 0 4663 4805 372333902 372333760 2.470000e-63 254.0
32 TraesCS2D01G369400 chr1D 98.601 143 2 0 4663 4805 460311430 460311288 2.470000e-63 254.0
33 TraesCS2D01G369400 chr1D 96.053 152 4 2 4663 4814 117787862 117787713 4.140000e-61 246.0
34 TraesCS2D01G369400 chr1D 94.000 50 1 2 1801 1850 474138072 474138119 2.070000e-09 75.0
35 TraesCS2D01G369400 chr5B 97.917 144 3 0 4662 4805 704319840 704319983 3.200000e-62 250.0
36 TraesCS2D01G369400 chr4A 92.727 55 3 1 1788 1841 626938733 626938787 1.600000e-10 78.7
37 TraesCS2D01G369400 chr7A 85.135 74 9 2 1771 1843 553224899 553224971 2.070000e-09 75.0
38 TraesCS2D01G369400 chr3B 94.000 50 1 2 1792 1841 334313166 334313119 2.070000e-09 75.0
39 TraesCS2D01G369400 chr3A 88.525 61 4 3 1796 1855 729183846 729183904 2.670000e-08 71.3
40 TraesCS2D01G369400 chr3A 88.525 61 4 3 1796 1855 729577487 729577429 2.670000e-08 71.3
41 TraesCS2D01G369400 chr3A 83.333 72 10 2 1770 1841 32446107 32446176 1.240000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G369400 chr2D 473586736 473592082 5346 False 9875.000000 9875 100.000000 1 5347 1 chr2D.!!$F1 5346
1 TraesCS2D01G369400 chr2A 615522120 615527351 5231 False 804.250000 2748 88.166750 23 5347 8 chr2A.!!$F1 5324
2 TraesCS2D01G369400 chrUn 75455799 75460948 5149 True 621.857143 2575 91.658286 22 5347 7 chrUn.!!$R1 5325
3 TraesCS2D01G369400 chr2B 553978174 553983032 4858 False 717.875000 2462 91.806000 49 4988 8 chr2B.!!$F2 4939

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 982 0.037697 AGACCAATCGCAGCGTAACA 60.038 50.0 15.93 0.00 0.0 2.41 F
1682 1957 0.031585 CTCGTCAATCCGGCCGAATA 59.968 55.0 30.73 12.51 0.0 1.75 F
1687 1962 0.307760 CAATCCGGCCGAATAGCAAC 59.692 55.0 30.73 0.00 0.0 4.17 F
1727 2003 0.667993 CTTGCCTTTCCTCGTTTGCA 59.332 50.0 0.00 0.00 0.0 4.08 F
2664 4230 0.668401 GAAATGGCTTGCTGTGGTGC 60.668 55.0 0.00 0.00 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2666 4232 0.107897 CACGATTCCAATCACGGGGA 60.108 55.000 0.00 0.00 35.11 4.81 R
2668 4234 1.290203 CTCACGATTCCAATCACGGG 58.710 55.000 0.00 0.00 35.11 5.28 R
2930 4790 1.410517 ACACCGACATCTGCAGATAGG 59.589 52.381 28.27 28.63 32.63 2.57 R
3323 5194 2.291741 GCCCGAGAAAGCATAATTGGAG 59.708 50.000 0.00 0.00 0.00 3.86 R
4644 6519 0.251474 ACTGGGCCGCCGACTATATA 60.251 55.000 2.55 0.00 0.00 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.445682 CTACTCCTGCTCACCCTAGT 57.554 55.000 0.00 0.00 0.00 2.57
20 21 2.741145 CTACTCCTGCTCACCCTAGTT 58.259 52.381 0.00 0.00 0.00 2.24
21 22 2.031495 ACTCCTGCTCACCCTAGTTT 57.969 50.000 0.00 0.00 0.00 2.66
90 91 3.944250 ATGCTCCACCAAAGCCCGG 62.944 63.158 0.00 0.00 39.05 5.73
102 103 1.557269 AAGCCCGGTCATGAAGAGCT 61.557 55.000 0.00 0.00 42.56 4.09
138 139 1.484038 AACAAGGACAAGCAAGGCAA 58.516 45.000 0.00 0.00 0.00 4.52
148 149 4.260170 ACAAGCAAGGCAAAAACATCAAA 58.740 34.783 0.00 0.00 0.00 2.69
211 212 3.009033 ACAAGATCCTCAAATTCCGGTCA 59.991 43.478 0.00 0.00 0.00 4.02
223 224 2.358737 CGGTCAACCAGTGAGGGC 60.359 66.667 0.00 0.00 43.89 5.19
286 287 3.641437 TGAAACACAATGCTTGTAGCC 57.359 42.857 1.95 0.00 43.23 3.93
290 291 0.523072 CACAATGCTTGTAGCCGCTT 59.477 50.000 0.00 0.00 43.23 4.68
299 300 0.109723 TGTAGCCGCTTTCCCTTGTT 59.890 50.000 0.00 0.00 0.00 2.83
303 304 0.318699 GCCGCTTTCCCTTGTTTGAC 60.319 55.000 0.00 0.00 0.00 3.18
321 328 1.296755 ACGCTTCTGATGCACAGCAG 61.297 55.000 9.58 9.58 43.65 4.24
423 435 2.503943 GGTAACTCGCAATTGTGACG 57.496 50.000 17.57 15.12 0.00 4.35
424 436 1.463528 GGTAACTCGCAATTGTGACGC 60.464 52.381 17.57 7.92 0.00 5.19
425 437 1.459592 GTAACTCGCAATTGTGACGCT 59.540 47.619 17.57 7.61 0.00 5.07
426 438 0.235665 AACTCGCAATTGTGACGCTG 59.764 50.000 17.57 10.54 0.00 5.18
427 439 0.599991 ACTCGCAATTGTGACGCTGA 60.600 50.000 17.57 0.00 0.00 4.26
428 440 0.179240 CTCGCAATTGTGACGCTGAC 60.179 55.000 17.57 0.00 0.00 3.51
443 455 2.040213 CTGACGCATGATTCCGGTGC 62.040 60.000 0.00 1.91 35.59 5.01
470 482 8.138928 TCTTGTCCTCTCTTTCTGAATTATGA 57.861 34.615 0.00 0.00 0.00 2.15
472 484 7.487822 TGTCCTCTCTTTCTGAATTATGAGT 57.512 36.000 0.00 0.00 0.00 3.41
473 485 7.551585 TGTCCTCTCTTTCTGAATTATGAGTC 58.448 38.462 0.00 0.00 0.00 3.36
559 707 4.240881 CGGCACCCGGTACTACTA 57.759 61.111 0.00 0.00 44.15 1.82
592 740 0.883370 AAGTCGTTGGCTTCCGGTTC 60.883 55.000 0.00 0.00 0.00 3.62
655 803 1.807981 CTCACGCGCAACCGGAATA 60.808 57.895 9.46 0.00 34.32 1.75
684 832 9.635404 TCTGGAATTCTAAAACCTCTTTAAACA 57.365 29.630 5.23 0.00 0.00 2.83
693 841 3.053826 ACCTCTTTAAACACCAGGACCT 58.946 45.455 0.00 0.00 0.00 3.85
710 858 4.407296 AGGACCTGGAATCTTGATAGTGAC 59.593 45.833 0.00 0.00 0.00 3.67
731 879 9.303116 AGTGACTCCCATGTAATATAAGAGTAG 57.697 37.037 0.00 0.00 33.46 2.57
762 910 2.558359 GCCACTTGCACCATAGAAAACT 59.442 45.455 0.00 0.00 40.77 2.66
775 925 1.003233 AAAACTCCGAGCTCCTGCC 60.003 57.895 8.47 0.00 40.80 4.85
796 946 2.047274 CTGCCGTGAACGTGGGAT 60.047 61.111 1.75 0.00 37.74 3.85
801 954 2.949909 CGTGAACGTGGGATGGGGA 61.950 63.158 0.00 0.00 34.11 4.81
824 978 1.577328 CCAAAGACCAATCGCAGCGT 61.577 55.000 15.93 0.00 0.00 5.07
825 979 1.075542 CAAAGACCAATCGCAGCGTA 58.924 50.000 15.93 1.65 0.00 4.42
826 980 1.463056 CAAAGACCAATCGCAGCGTAA 59.537 47.619 15.93 0.00 0.00 3.18
827 981 1.076332 AAGACCAATCGCAGCGTAAC 58.924 50.000 15.93 2.21 0.00 2.50
828 982 0.037697 AGACCAATCGCAGCGTAACA 60.038 50.000 15.93 0.00 0.00 2.41
830 984 1.195900 GACCAATCGCAGCGTAACAAA 59.804 47.619 15.93 0.00 0.00 2.83
831 985 1.069500 ACCAATCGCAGCGTAACAAAC 60.069 47.619 15.93 0.00 0.00 2.93
832 986 1.196808 CCAATCGCAGCGTAACAAACT 59.803 47.619 15.93 0.00 0.00 2.66
834 988 3.120477 CCAATCGCAGCGTAACAAACTAA 60.120 43.478 15.93 0.00 0.00 2.24
835 989 4.436852 CCAATCGCAGCGTAACAAACTAAT 60.437 41.667 15.93 0.00 0.00 1.73
838 992 5.444586 TCGCAGCGTAACAAACTAATTAG 57.555 39.130 15.93 11.05 0.00 1.73
839 993 4.925054 TCGCAGCGTAACAAACTAATTAGT 59.075 37.500 15.93 12.50 38.39 2.24
840 994 5.061311 TCGCAGCGTAACAAACTAATTAGTC 59.939 40.000 18.28 4.35 34.99 2.59
841 995 5.061808 CGCAGCGTAACAAACTAATTAGTCT 59.938 40.000 18.28 1.58 34.99 3.24
843 997 7.513196 CGCAGCGTAACAAACTAATTAGTCTAG 60.513 40.741 18.28 12.98 34.99 2.43
862 1025 1.070758 AGCATACATAGACCCAAGCCG 59.929 52.381 0.00 0.00 0.00 5.52
864 1027 2.484770 GCATACATAGACCCAAGCCGAA 60.485 50.000 0.00 0.00 0.00 4.30
872 1035 0.467290 ACCCAAGCCGAAGCAAAAGA 60.467 50.000 0.00 0.00 43.56 2.52
908 1072 3.954465 CTTGAGCTCCTGCGCTGCT 62.954 63.158 12.15 13.10 45.42 4.24
909 1073 3.541950 TTGAGCTCCTGCGCTGCTT 62.542 57.895 12.15 0.00 45.42 3.91
936 1100 4.270808 GCTAGATCTGAAGAGAAGCAAAGC 59.729 45.833 5.18 0.00 31.42 3.51
981 1147 2.573369 CTAGACTAGCCCTTGAGCGTA 58.427 52.381 0.00 0.00 38.01 4.42
993 1159 1.605753 TGAGCGTAGTAGCATCGGAT 58.394 50.000 0.00 0.00 40.15 4.18
1237 1413 7.401493 AGTCATCTTCTCTTCTTTCATTCCCTA 59.599 37.037 0.00 0.00 0.00 3.53
1240 1416 8.700051 CATCTTCTCTTCTTTCATTCCCTACTA 58.300 37.037 0.00 0.00 0.00 1.82
1244 1420 6.613271 TCTCTTCTTTCATTCCCTACTATGCT 59.387 38.462 0.00 0.00 0.00 3.79
1270 1481 3.223435 CTCGGCTATGTTTCTCTAGGGA 58.777 50.000 0.00 0.00 0.00 4.20
1271 1482 2.957006 TCGGCTATGTTTCTCTAGGGAC 59.043 50.000 0.00 0.00 0.00 4.46
1272 1483 2.036089 CGGCTATGTTTCTCTAGGGACC 59.964 54.545 0.00 0.00 0.00 4.46
1273 1484 2.369203 GGCTATGTTTCTCTAGGGACCC 59.631 54.545 0.59 0.59 0.00 4.46
1274 1485 3.039011 GCTATGTTTCTCTAGGGACCCA 58.961 50.000 14.60 0.00 0.00 4.51
1275 1486 3.454812 GCTATGTTTCTCTAGGGACCCAA 59.545 47.826 14.60 0.00 0.00 4.12
1281 1492 2.764269 TCTCTAGGGACCCAAATCCAG 58.236 52.381 14.60 0.00 40.96 3.86
1310 1521 1.817099 CTGCTCGGGGAGAATGCAC 60.817 63.158 0.00 0.00 32.36 4.57
1324 1535 2.327343 TGCACTGCATCGCAACCTC 61.327 57.895 7.66 0.00 38.41 3.85
1325 1536 2.037136 GCACTGCATCGCAACCTCT 61.037 57.895 0.00 0.00 38.41 3.69
1416 1642 4.214332 GCTGTAGCTTAGCAAGAAACTGTT 59.786 41.667 15.42 0.00 40.81 3.16
1434 1660 0.320374 TTTGCGTTGAGGATCGGAGT 59.680 50.000 0.00 0.00 38.61 3.85
1435 1661 1.179152 TTGCGTTGAGGATCGGAGTA 58.821 50.000 0.00 0.00 38.61 2.59
1436 1662 0.454600 TGCGTTGAGGATCGGAGTAC 59.545 55.000 0.00 0.00 38.61 2.73
1437 1663 0.739561 GCGTTGAGGATCGGAGTACT 59.260 55.000 0.00 0.00 38.61 2.73
1438 1664 1.268640 GCGTTGAGGATCGGAGTACTC 60.269 57.143 14.87 14.87 38.61 2.59
1439 1665 1.334243 CGTTGAGGATCGGAGTACTCC 59.666 57.143 29.18 29.18 46.18 3.85
1466 1695 4.607024 CCGTGTTTGGCAGTTTCG 57.393 55.556 0.00 0.00 0.00 3.46
1467 1696 1.725066 CCGTGTTTGGCAGTTTCGT 59.275 52.632 0.00 0.00 0.00 3.85
1468 1697 0.099791 CCGTGTTTGGCAGTTTCGTT 59.900 50.000 0.00 0.00 0.00 3.85
1469 1698 1.187715 CGTGTTTGGCAGTTTCGTTG 58.812 50.000 0.00 0.00 0.00 4.10
1470 1699 1.555477 GTGTTTGGCAGTTTCGTTGG 58.445 50.000 0.00 0.00 0.00 3.77
1471 1700 0.179124 TGTTTGGCAGTTTCGTTGGC 60.179 50.000 0.00 0.00 41.12 4.52
1472 1701 0.102300 GTTTGGCAGTTTCGTTGGCT 59.898 50.000 0.61 0.00 41.29 4.75
1473 1702 0.102120 TTTGGCAGTTTCGTTGGCTG 59.898 50.000 0.61 0.00 41.29 4.85
1474 1703 1.733402 TTGGCAGTTTCGTTGGCTGG 61.733 55.000 0.61 0.00 41.29 4.85
1475 1704 2.193536 GGCAGTTTCGTTGGCTGGT 61.194 57.895 0.00 0.00 38.03 4.00
1476 1705 1.733526 GCAGTTTCGTTGGCTGGTT 59.266 52.632 0.00 0.00 0.00 3.67
1487 1716 1.072266 TGGCTGGTTGAGGTTGGTAT 58.928 50.000 0.00 0.00 0.00 2.73
1488 1717 1.427368 TGGCTGGTTGAGGTTGGTATT 59.573 47.619 0.00 0.00 0.00 1.89
1494 1723 2.556622 GGTTGAGGTTGGTATTGGTGTG 59.443 50.000 0.00 0.00 0.00 3.82
1496 1725 2.058705 TGAGGTTGGTATTGGTGTGGA 58.941 47.619 0.00 0.00 0.00 4.02
1497 1726 2.224670 TGAGGTTGGTATTGGTGTGGAC 60.225 50.000 0.00 0.00 0.00 4.02
1499 1728 1.161843 GTTGGTATTGGTGTGGACGG 58.838 55.000 0.00 0.00 0.00 4.79
1500 1729 0.606944 TTGGTATTGGTGTGGACGGC 60.607 55.000 0.00 0.00 0.00 5.68
1501 1730 1.298667 GGTATTGGTGTGGACGGCT 59.701 57.895 0.00 0.00 0.00 5.52
1503 1732 1.648504 GTATTGGTGTGGACGGCTAC 58.351 55.000 0.00 0.00 0.00 3.58
1504 1733 1.206371 GTATTGGTGTGGACGGCTACT 59.794 52.381 6.25 0.00 0.00 2.57
1505 1734 0.036388 ATTGGTGTGGACGGCTACTG 60.036 55.000 6.25 0.00 0.00 2.74
1556 1807 3.056821 TCTGAGATCGATCGTTGGTTTGT 60.057 43.478 19.33 0.00 0.00 2.83
1560 1814 4.421948 AGATCGATCGTTGGTTTGTACTC 58.578 43.478 19.33 0.00 0.00 2.59
1567 1827 2.921754 CGTTGGTTTGTACTCGAGGATC 59.078 50.000 18.41 7.08 0.00 3.36
1608 1872 7.390718 ACCATAGAGTTTGCTTAAACTTGTAGG 59.609 37.037 6.84 9.24 42.57 3.18
1655 1930 3.696045 AGTACAGCTCTGTCTCACTGAT 58.304 45.455 5.72 0.00 43.74 2.90
1682 1957 0.031585 CTCGTCAATCCGGCCGAATA 59.968 55.000 30.73 12.51 0.00 1.75
1687 1962 0.307760 CAATCCGGCCGAATAGCAAC 59.692 55.000 30.73 0.00 0.00 4.17
1700 1976 4.436050 CGAATAGCAACTCGCATTTTCACT 60.436 41.667 0.00 0.00 46.13 3.41
1701 1977 2.977405 AGCAACTCGCATTTTCACTC 57.023 45.000 0.00 0.00 46.13 3.51
1705 1981 1.298859 ACTCGCATTTTCACTCGGCC 61.299 55.000 0.00 0.00 0.00 6.13
1710 1986 1.474077 GCATTTTCACTCGGCCATCTT 59.526 47.619 2.24 0.00 0.00 2.40
1721 1997 2.101700 GCCATCTTGCCTTTCCTCG 58.898 57.895 0.00 0.00 0.00 4.63
1724 2000 2.162681 CCATCTTGCCTTTCCTCGTTT 58.837 47.619 0.00 0.00 0.00 3.60
1725 2001 2.095059 CCATCTTGCCTTTCCTCGTTTG 60.095 50.000 0.00 0.00 0.00 2.93
1727 2003 0.667993 CTTGCCTTTCCTCGTTTGCA 59.332 50.000 0.00 0.00 0.00 4.08
1734 2010 4.229876 CCTTTCCTCGTTTGCATTCTTTC 58.770 43.478 0.00 0.00 0.00 2.62
1738 2014 5.108385 TCCTCGTTTGCATTCTTTCTTTC 57.892 39.130 0.00 0.00 0.00 2.62
1741 2017 5.163302 TCGTTTGCATTCTTTCTTTCGAA 57.837 34.783 0.00 0.00 0.00 3.71
1746 2022 7.845622 CGTTTGCATTCTTTCTTTCGAATTTTT 59.154 29.630 0.00 0.00 0.00 1.94
1755 2031 9.878599 TCTTTCTTTCGAATTTTTCACTATCAC 57.121 29.630 0.00 0.00 0.00 3.06
1803 2197 5.869344 CAGGAACGATCTACATCACTCAAAA 59.131 40.000 0.00 0.00 0.00 2.44
1804 2198 6.536582 CAGGAACGATCTACATCACTCAAAAT 59.463 38.462 0.00 0.00 0.00 1.82
1805 2199 7.706607 CAGGAACGATCTACATCACTCAAAATA 59.293 37.037 0.00 0.00 0.00 1.40
1806 2200 7.707035 AGGAACGATCTACATCACTCAAAATAC 59.293 37.037 0.00 0.00 0.00 1.89
1807 2201 7.707035 GGAACGATCTACATCACTCAAAATACT 59.293 37.037 0.00 0.00 0.00 2.12
1808 2202 9.731819 GAACGATCTACATCACTCAAAATACTA 57.268 33.333 0.00 0.00 0.00 1.82
1809 2203 9.517609 AACGATCTACATCACTCAAAATACTAC 57.482 33.333 0.00 0.00 0.00 2.73
1810 2204 8.904834 ACGATCTACATCACTCAAAATACTACT 58.095 33.333 0.00 0.00 0.00 2.57
1811 2205 9.388346 CGATCTACATCACTCAAAATACTACTC 57.612 37.037 0.00 0.00 0.00 2.59
1812 2206 9.685828 GATCTACATCACTCAAAATACTACTCC 57.314 37.037 0.00 0.00 0.00 3.85
1813 2207 8.008513 TCTACATCACTCAAAATACTACTCCC 57.991 38.462 0.00 0.00 0.00 4.30
1814 2208 6.875972 ACATCACTCAAAATACTACTCCCT 57.124 37.500 0.00 0.00 0.00 4.20
1815 2209 6.879400 ACATCACTCAAAATACTACTCCCTC 58.121 40.000 0.00 0.00 0.00 4.30
1816 2210 5.934402 TCACTCAAAATACTACTCCCTCC 57.066 43.478 0.00 0.00 0.00 4.30
1817 2211 4.401519 TCACTCAAAATACTACTCCCTCCG 59.598 45.833 0.00 0.00 0.00 4.63
1818 2212 4.159879 CACTCAAAATACTACTCCCTCCGT 59.840 45.833 0.00 0.00 0.00 4.69
1819 2213 4.401837 ACTCAAAATACTACTCCCTCCGTC 59.598 45.833 0.00 0.00 0.00 4.79
1820 2214 3.703052 TCAAAATACTACTCCCTCCGTCC 59.297 47.826 0.00 0.00 0.00 4.79
1821 2215 2.378378 AATACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
1822 2216 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
1823 2217 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
1824 2218 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1825 2219 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1826 2220 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1827 2221 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1828 2222 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1829 2223 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1830 2224 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
1831 2225 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
1832 2226 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
1833 2227 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
1835 2229 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
1836 2230 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
1837 2231 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
1838 2232 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
1839 2233 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
1882 2276 6.741992 TGAAATAGCTGACCACATAGTTTG 57.258 37.500 0.00 0.00 0.00 2.93
1887 2287 2.157668 GCTGACCACATAGTTTGACACG 59.842 50.000 0.00 0.00 0.00 4.49
1894 2294 4.084223 CCACATAGTTTGACACGGTGTAAC 60.084 45.833 14.74 15.32 0.00 2.50
1964 2403 1.896660 GTCCTGTTTGCCGGCAAGA 60.897 57.895 37.88 29.14 37.24 3.02
2001 3509 4.161942 CACCTTCCATAATTTTCCATGCCA 59.838 41.667 0.00 0.00 0.00 4.92
2002 3510 4.782156 ACCTTCCATAATTTTCCATGCCAA 59.218 37.500 0.00 0.00 0.00 4.52
2003 3511 5.104817 ACCTTCCATAATTTTCCATGCCAAG 60.105 40.000 0.00 0.00 0.00 3.61
2004 3512 5.129155 CCTTCCATAATTTTCCATGCCAAGA 59.871 40.000 0.00 0.00 0.00 3.02
2005 3513 5.596836 TCCATAATTTTCCATGCCAAGAC 57.403 39.130 0.00 0.00 0.00 3.01
2006 3514 5.022122 TCCATAATTTTCCATGCCAAGACA 58.978 37.500 0.00 0.00 0.00 3.41
2007 3515 5.127519 TCCATAATTTTCCATGCCAAGACAG 59.872 40.000 0.00 0.00 0.00 3.51
2008 3516 5.105228 CCATAATTTTCCATGCCAAGACAGT 60.105 40.000 0.00 0.00 0.00 3.55
2009 3517 4.961438 AATTTTCCATGCCAAGACAGTT 57.039 36.364 0.00 0.00 0.00 3.16
2010 3518 4.961438 ATTTTCCATGCCAAGACAGTTT 57.039 36.364 0.00 0.00 0.00 2.66
2011 3519 4.751767 TTTTCCATGCCAAGACAGTTTT 57.248 36.364 0.00 0.00 0.00 2.43
2012 3520 4.751767 TTTCCATGCCAAGACAGTTTTT 57.248 36.364 0.00 0.00 0.00 1.94
2146 3689 1.913419 TCCAAACCGAATTCTAGCCCT 59.087 47.619 3.52 0.00 0.00 5.19
2270 3813 4.082845 CAGACCAGTAGGAAAGAGACAGA 58.917 47.826 0.00 0.00 38.69 3.41
2381 3944 4.374702 CGGCAACAGCAGCGTCAC 62.375 66.667 0.00 0.00 0.00 3.67
2382 3945 4.030452 GGCAACAGCAGCGTCACC 62.030 66.667 0.00 0.00 0.00 4.02
2383 3946 4.374702 GCAACAGCAGCGTCACCG 62.375 66.667 0.00 0.00 37.07 4.94
2466 4029 3.952628 GAGCAAGTACGCGGCCCTT 62.953 63.158 12.47 6.19 36.85 3.95
2642 4208 4.592936 CGCGGCCGAGTCTACGAG 62.593 72.222 33.48 3.43 36.29 4.18
2656 4222 3.552294 GTCTACGAGTAGAAATGGCTTGC 59.448 47.826 13.83 0.00 43.12 4.01
2661 4227 2.421424 GAGTAGAAATGGCTTGCTGTGG 59.579 50.000 0.00 0.00 0.00 4.17
2662 4228 2.162681 GTAGAAATGGCTTGCTGTGGT 58.837 47.619 0.00 0.00 0.00 4.16
2663 4229 0.963962 AGAAATGGCTTGCTGTGGTG 59.036 50.000 0.00 0.00 0.00 4.17
2664 4230 0.668401 GAAATGGCTTGCTGTGGTGC 60.668 55.000 0.00 0.00 0.00 5.01
2666 4232 4.873810 TGGCTTGCTGTGGTGCGT 62.874 61.111 0.00 0.00 35.36 5.24
2668 4234 4.030452 GCTTGCTGTGGTGCGTCC 62.030 66.667 0.00 0.00 35.36 4.79
2670 4236 4.947147 TTGCTGTGGTGCGTCCCC 62.947 66.667 0.00 0.00 35.36 4.81
2702 4303 2.035449 TCGTGAGTTCGTGACATCCTTT 59.965 45.455 0.00 0.00 0.00 3.11
2706 4307 3.807622 TGAGTTCGTGACATCCTTTTGAC 59.192 43.478 0.00 0.00 0.00 3.18
2734 4335 1.532868 GAGATTTGCAACTGCTGACGT 59.467 47.619 0.00 0.00 42.66 4.34
2791 4414 8.739039 TGATTTTATTCTCAACCACACCATAAG 58.261 33.333 0.00 0.00 0.00 1.73
2792 4415 8.650143 ATTTTATTCTCAACCACACCATAAGT 57.350 30.769 0.00 0.00 0.00 2.24
2811 4434 5.344743 AAGTGACTGAACAGAGAACTTCA 57.655 39.130 8.87 0.00 29.76 3.02
2835 4586 4.732285 ACTGCAACATGAAGTTAAGACG 57.268 40.909 0.00 0.00 30.23 4.18
2905 4765 9.699410 ATTTGAGATTCCATGGTTATCTAACAA 57.301 29.630 23.25 20.71 37.92 2.83
2930 4790 2.094182 TCGTAACCCAAGACTCATGCTC 60.094 50.000 0.00 0.00 0.00 4.26
3029 4889 3.690460 AGAAATCCTAGTTGGTTGCCTG 58.310 45.455 0.00 0.00 37.07 4.85
3110 4976 1.266867 AATGGACAATGGGCCTTGGC 61.267 55.000 16.56 14.29 33.10 4.52
3323 5194 1.517210 GGATCCTCCTCGGCTACGTC 61.517 65.000 3.84 0.00 41.85 4.34
3464 5339 1.767088 TGGCTGATGATGGAGAAGAGG 59.233 52.381 0.00 0.00 0.00 3.69
3566 5441 5.506982 GGAAGCTGCAAATATCATGAAGTCC 60.507 44.000 0.00 0.00 0.00 3.85
3647 5522 1.653115 GATGCTGTATGCTGGCTGC 59.347 57.895 9.67 9.67 43.37 5.25
3977 5852 2.126502 GTTTGCGGGAATGTGGCG 60.127 61.111 0.00 0.00 0.00 5.69
3989 5864 2.386661 ATGTGGCGTTCTTCTCGATT 57.613 45.000 0.00 0.00 0.00 3.34
4308 6183 3.244814 CGAGCTTGAAGATACACAGCATC 59.755 47.826 0.00 0.00 0.00 3.91
4400 6275 1.399471 GCAGAGCAACAAGAAGCTTCG 60.399 52.381 20.43 10.11 42.04 3.79
4403 6278 0.308993 AGCAACAAGAAGCTTCGTGC 59.691 50.000 33.34 29.48 39.76 5.34
4449 6324 4.518590 TGCTTCCGACATCAGATTGAAAAA 59.481 37.500 0.00 0.00 0.00 1.94
4450 6325 5.183713 TGCTTCCGACATCAGATTGAAAAAT 59.816 36.000 0.00 0.00 0.00 1.82
4451 6326 5.514204 GCTTCCGACATCAGATTGAAAAATG 59.486 40.000 0.00 0.00 0.00 2.32
4488 6363 0.321919 AGCTGCTGCCGATTTTGAGA 60.322 50.000 12.44 0.00 40.80 3.27
4594 6469 8.638873 ACCATATCACAAATATCACGTAGAAGA 58.361 33.333 0.00 0.00 0.00 2.87
4600 6475 6.020599 CACAAATATCACGTAGAAGAAGGACG 60.021 42.308 0.00 0.00 42.22 4.79
4611 6486 1.609208 AGAAGGACGCAATGCTGTTT 58.391 45.000 2.94 0.00 0.00 2.83
4614 6489 2.989422 AGGACGCAATGCTGTTTTAC 57.011 45.000 2.94 0.00 0.00 2.01
4656 6531 9.745880 ACCTATAAAATCAATATATAGTCGGCG 57.254 33.333 0.00 0.00 30.89 6.46
4657 6532 9.193133 CCTATAAAATCAATATATAGTCGGCGG 57.807 37.037 7.21 0.00 30.89 6.13
4658 6533 5.796350 AAAATCAATATATAGTCGGCGGC 57.204 39.130 1.71 1.71 0.00 6.53
4659 6534 2.953466 TCAATATATAGTCGGCGGCC 57.047 50.000 8.37 9.54 0.00 6.13
4660 6535 1.479323 TCAATATATAGTCGGCGGCCC 59.521 52.381 14.55 0.00 0.00 5.80
4661 6536 1.206132 CAATATATAGTCGGCGGCCCA 59.794 52.381 14.55 0.00 0.00 5.36
4662 6537 1.112113 ATATATAGTCGGCGGCCCAG 58.888 55.000 14.55 0.00 0.00 4.45
4663 6538 0.251474 TATATAGTCGGCGGCCCAGT 60.251 55.000 14.55 6.28 0.00 4.00
4664 6539 1.816863 ATATAGTCGGCGGCCCAGTG 61.817 60.000 14.55 0.00 0.00 3.66
4666 6541 3.813562 TATAGTCGGCGGCCCAGTGTA 62.814 57.143 14.55 3.43 0.00 2.90
4667 6542 4.814294 GTCGGCGGCCCAGTGTAG 62.814 72.222 14.55 0.00 0.00 2.74
4672 6547 4.063967 CGGCCCAGTGTAGCGACA 62.064 66.667 0.00 0.00 0.00 4.35
4673 6548 2.125512 GGCCCAGTGTAGCGACAG 60.126 66.667 0.00 0.00 35.82 3.51
4674 6549 2.657237 GCCCAGTGTAGCGACAGT 59.343 61.111 0.00 0.00 40.00 3.55
4675 6550 1.004918 GCCCAGTGTAGCGACAGTT 60.005 57.895 4.35 0.00 37.10 3.16
4676 6551 0.602905 GCCCAGTGTAGCGACAGTTT 60.603 55.000 4.35 0.00 37.10 2.66
4677 6552 1.148310 CCCAGTGTAGCGACAGTTTG 58.852 55.000 4.35 2.27 37.10 2.93
4678 6553 1.540363 CCCAGTGTAGCGACAGTTTGT 60.540 52.381 4.35 0.00 37.10 2.83
4679 6554 2.210116 CCAGTGTAGCGACAGTTTGTT 58.790 47.619 4.35 0.00 37.10 2.83
4680 6555 2.032894 CCAGTGTAGCGACAGTTTGTTG 60.033 50.000 4.35 0.00 37.10 3.33
4688 6563 3.155344 CGACAGTTTGTTGCTTAGACG 57.845 47.619 0.00 0.00 0.00 4.18
4689 6564 2.096909 CGACAGTTTGTTGCTTAGACGG 60.097 50.000 0.00 0.00 0.00 4.79
4690 6565 1.602377 ACAGTTTGTTGCTTAGACGGC 59.398 47.619 0.00 0.00 0.00 5.68
4691 6566 0.865769 AGTTTGTTGCTTAGACGGCG 59.134 50.000 4.80 4.80 0.00 6.46
4692 6567 0.110373 GTTTGTTGCTTAGACGGCGG 60.110 55.000 13.24 0.00 0.00 6.13
4693 6568 1.847890 TTTGTTGCTTAGACGGCGGC 61.848 55.000 13.24 8.92 0.00 6.53
4694 6569 2.434359 GTTGCTTAGACGGCGGCT 60.434 61.111 23.30 23.30 0.00 5.52
4695 6570 2.033194 GTTGCTTAGACGGCGGCTT 61.033 57.895 25.39 5.00 0.00 4.35
4696 6571 1.302192 TTGCTTAGACGGCGGCTTT 60.302 52.632 25.39 0.00 0.00 3.51
4697 6572 0.037139 TTGCTTAGACGGCGGCTTTA 60.037 50.000 25.39 9.12 0.00 1.85
4698 6573 0.459585 TGCTTAGACGGCGGCTTTAG 60.460 55.000 25.39 20.26 0.00 1.85
4699 6574 1.763200 GCTTAGACGGCGGCTTTAGC 61.763 60.000 25.39 26.09 41.14 3.09
4715 6590 6.108097 GCTTTAGCCTTACTGTTGTATGAC 57.892 41.667 0.00 0.00 34.31 3.06
4716 6591 5.875359 GCTTTAGCCTTACTGTTGTATGACT 59.125 40.000 0.00 0.00 34.31 3.41
4717 6592 6.371825 GCTTTAGCCTTACTGTTGTATGACTT 59.628 38.462 0.00 0.00 34.31 3.01
4718 6593 7.094762 GCTTTAGCCTTACTGTTGTATGACTTT 60.095 37.037 0.00 0.00 34.31 2.66
4719 6594 7.667043 TTAGCCTTACTGTTGTATGACTTTG 57.333 36.000 0.00 0.00 0.00 2.77
4720 6595 5.621193 AGCCTTACTGTTGTATGACTTTGT 58.379 37.500 0.00 0.00 0.00 2.83
4721 6596 6.765403 AGCCTTACTGTTGTATGACTTTGTA 58.235 36.000 0.00 0.00 0.00 2.41
4722 6597 7.221450 AGCCTTACTGTTGTATGACTTTGTAA 58.779 34.615 0.00 0.00 0.00 2.41
4723 6598 7.387948 AGCCTTACTGTTGTATGACTTTGTAAG 59.612 37.037 0.00 0.00 36.85 2.34
4724 6599 8.029642 CCTTACTGTTGTATGACTTTGTAAGG 57.970 38.462 12.25 12.25 44.77 2.69
4725 6600 7.660208 CCTTACTGTTGTATGACTTTGTAAGGT 59.340 37.037 16.10 0.00 44.92 3.50
4726 6601 8.597662 TTACTGTTGTATGACTTTGTAAGGTC 57.402 34.615 0.44 0.44 0.00 3.85
4727 6602 6.827727 ACTGTTGTATGACTTTGTAAGGTCT 58.172 36.000 8.11 0.00 34.01 3.85
4728 6603 7.280356 ACTGTTGTATGACTTTGTAAGGTCTT 58.720 34.615 8.11 4.91 34.01 3.01
4729 6604 7.226720 ACTGTTGTATGACTTTGTAAGGTCTTG 59.773 37.037 8.11 0.00 34.01 3.02
4730 6605 7.051623 TGTTGTATGACTTTGTAAGGTCTTGT 58.948 34.615 8.11 0.00 34.01 3.16
4731 6606 7.011950 TGTTGTATGACTTTGTAAGGTCTTGTG 59.988 37.037 8.11 0.00 34.01 3.33
4732 6607 6.822442 TGTATGACTTTGTAAGGTCTTGTGA 58.178 36.000 8.11 0.00 34.01 3.58
4733 6608 6.929049 TGTATGACTTTGTAAGGTCTTGTGAG 59.071 38.462 8.11 0.00 34.01 3.51
4734 6609 5.607939 TGACTTTGTAAGGTCTTGTGAGA 57.392 39.130 8.11 0.00 34.01 3.27
4735 6610 5.984725 TGACTTTGTAAGGTCTTGTGAGAA 58.015 37.500 8.11 0.00 32.66 2.87
4736 6611 6.591935 TGACTTTGTAAGGTCTTGTGAGAAT 58.408 36.000 8.11 0.00 32.66 2.40
4737 6612 7.732025 TGACTTTGTAAGGTCTTGTGAGAATA 58.268 34.615 8.11 0.00 32.66 1.75
4738 6613 8.208224 TGACTTTGTAAGGTCTTGTGAGAATAA 58.792 33.333 8.11 0.00 32.66 1.40
4739 6614 9.220767 GACTTTGTAAGGTCTTGTGAGAATAAT 57.779 33.333 0.23 0.00 32.66 1.28
4740 6615 9.574516 ACTTTGTAAGGTCTTGTGAGAATAATT 57.425 29.630 0.00 0.00 32.66 1.40
4752 6627 9.736023 CTTGTGAGAATAATTAATAAAGTGGCC 57.264 33.333 0.00 0.00 0.00 5.36
4753 6628 7.925993 TGTGAGAATAATTAATAAAGTGGCCG 58.074 34.615 0.00 0.00 0.00 6.13
4754 6629 7.554835 TGTGAGAATAATTAATAAAGTGGCCGT 59.445 33.333 0.00 0.00 0.00 5.68
4755 6630 9.048446 GTGAGAATAATTAATAAAGTGGCCGTA 57.952 33.333 0.00 0.00 0.00 4.02
4756 6631 9.787435 TGAGAATAATTAATAAAGTGGCCGTAT 57.213 29.630 0.00 0.00 0.00 3.06
4758 6633 8.512138 AGAATAATTAATAAAGTGGCCGTATGC 58.488 33.333 0.00 0.00 40.16 3.14
4759 6634 7.753309 ATAATTAATAAAGTGGCCGTATGCA 57.247 32.000 0.00 0.00 43.89 3.96
4760 6635 6.648879 AATTAATAAAGTGGCCGTATGCAT 57.351 33.333 3.79 3.79 43.89 3.96
4761 6636 5.682943 TTAATAAAGTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
4762 6637 1.577468 TAAAGTGGCCGTATGCATCG 58.423 50.000 0.19 7.03 43.89 3.84
4763 6638 1.714899 AAAGTGGCCGTATGCATCGC 61.715 55.000 0.19 3.34 43.89 4.58
4764 6639 3.649986 GTGGCCGTATGCATCGCC 61.650 66.667 20.23 20.23 43.89 5.54
4765 6640 4.927782 TGGCCGTATGCATCGCCC 62.928 66.667 22.75 16.75 43.89 6.13
4766 6641 4.927782 GGCCGTATGCATCGCCCA 62.928 66.667 17.54 0.00 43.89 5.36
4767 6642 3.349006 GCCGTATGCATCGCCCAG 61.349 66.667 0.19 0.00 40.77 4.45
4768 6643 2.421314 CCGTATGCATCGCCCAGA 59.579 61.111 0.19 0.00 0.00 3.86
4769 6644 1.004560 CCGTATGCATCGCCCAGAT 60.005 57.895 0.19 0.00 41.01 2.90
4776 6651 2.827423 ATCGCCCAGATGCAGAGG 59.173 61.111 0.00 0.00 38.36 3.69
4777 6652 3.472943 ATCGCCCAGATGCAGAGGC 62.473 63.158 8.59 8.59 42.18 4.70
4780 6655 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
4781 6656 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
4782 6657 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
4788 6663 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
4791 6666 4.760220 AGGCCGGGGGTCATCCTT 62.760 66.667 2.18 0.00 35.33 3.36
4792 6667 4.191015 GGCCGGGGGTCATCCTTC 62.191 72.222 2.18 0.00 35.33 3.46
4793 6668 3.090532 GCCGGGGGTCATCCTTCT 61.091 66.667 2.18 0.00 35.33 2.85
4794 6669 2.680370 GCCGGGGGTCATCCTTCTT 61.680 63.158 2.18 0.00 35.33 2.52
4795 6670 1.999346 CCGGGGGTCATCCTTCTTT 59.001 57.895 0.00 0.00 35.33 2.52
4796 6671 0.331616 CCGGGGGTCATCCTTCTTTT 59.668 55.000 0.00 0.00 35.33 2.27
4797 6672 1.682087 CCGGGGGTCATCCTTCTTTTC 60.682 57.143 0.00 0.00 35.33 2.29
4798 6673 1.282157 CGGGGGTCATCCTTCTTTTCT 59.718 52.381 0.00 0.00 35.33 2.52
4799 6674 2.504175 CGGGGGTCATCCTTCTTTTCTA 59.496 50.000 0.00 0.00 35.33 2.10
4800 6675 3.054655 CGGGGGTCATCCTTCTTTTCTAA 60.055 47.826 0.00 0.00 35.33 2.10
4801 6676 4.566907 CGGGGGTCATCCTTCTTTTCTAAA 60.567 45.833 0.00 0.00 35.33 1.85
4802 6677 5.330233 GGGGGTCATCCTTCTTTTCTAAAA 58.670 41.667 0.00 0.00 35.33 1.52
4803 6678 5.778241 GGGGGTCATCCTTCTTTTCTAAAAA 59.222 40.000 0.00 0.00 35.33 1.94
4883 6758 9.921637 ACACAAGAAACAATTCTGTTCTTTTTA 57.078 25.926 5.26 0.00 45.25 1.52
4966 6843 4.752604 TGAAAACTAACTGTATGCGCTTCA 59.247 37.500 9.73 2.04 0.00 3.02
5057 6934 1.550327 TTGTGTTTCAACAGGCCACA 58.450 45.000 5.01 0.00 40.05 4.17
5069 6946 1.068895 CAGGCCACAATGAACTTGCAA 59.931 47.619 5.01 0.00 38.50 4.08
5111 6988 3.722627 TCTCTAGCACTCTACCCCTACAT 59.277 47.826 0.00 0.00 0.00 2.29
5120 6997 2.500098 TCTACCCCTACATGACAAGTGC 59.500 50.000 0.00 0.00 0.00 4.40
5178 7055 3.446516 AGCCCTAGTATCGAGTTCGTTTT 59.553 43.478 1.07 0.00 40.80 2.43
5233 7110 0.813610 CGACAACAGGAGTGCCACAA 60.814 55.000 0.00 0.00 36.29 3.33
5259 7136 2.031120 TGAAAGTTGCAGGGAGTTTGG 58.969 47.619 0.00 0.00 0.00 3.28
5314 7191 2.193087 AATAAGAAGGCCCGCACGGT 62.193 55.000 8.49 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.445682 ACTAGGGTGAGCAGGAGTAG 57.554 55.000 0.00 0.00 0.00 2.57
2 3 2.031495 AAACTAGGGTGAGCAGGAGT 57.969 50.000 0.00 0.00 0.00 3.85
3 4 3.425162 AAAAACTAGGGTGAGCAGGAG 57.575 47.619 0.00 0.00 0.00 3.69
90 91 1.028868 GGGTGCCAGCTCTTCATGAC 61.029 60.000 0.00 0.00 0.00 3.06
138 139 3.243401 GGACGGTGCTTCTTTGATGTTTT 60.243 43.478 0.00 0.00 0.00 2.43
148 149 1.674057 CTCCTTGGACGGTGCTTCT 59.326 57.895 0.31 0.00 0.00 2.85
211 212 2.847234 TGACGGCCCTCACTGGTT 60.847 61.111 0.00 0.00 0.00 3.67
223 224 2.125753 GCTCTGTGCTCCTGACGG 60.126 66.667 0.00 0.00 38.95 4.79
286 287 0.660300 GCGTCAAACAAGGGAAAGCG 60.660 55.000 0.00 0.00 0.00 4.68
290 291 1.946768 CAGAAGCGTCAAACAAGGGAA 59.053 47.619 1.61 0.00 0.00 3.97
299 300 1.150827 CTGTGCATCAGAAGCGTCAA 58.849 50.000 9.81 0.00 46.27 3.18
303 304 1.424240 CTGCTGTGCATCAGAAGCG 59.576 57.895 17.12 4.14 46.27 4.68
321 328 1.923356 TGAAGGGTCAAAGGATTGCC 58.077 50.000 0.00 0.00 36.45 4.52
377 385 5.279556 GGGATAGAGAATGCTAGTGGGTAAC 60.280 48.000 0.00 0.00 0.00 2.50
411 423 1.507713 CGTCAGCGTCACAATTGCG 60.508 57.895 5.05 2.27 0.00 4.85
423 435 1.815421 ACCGGAATCATGCGTCAGC 60.815 57.895 9.46 0.00 45.41 4.26
424 436 2.009108 CACCGGAATCATGCGTCAG 58.991 57.895 9.46 0.00 38.93 3.51
425 437 2.106074 GCACCGGAATCATGCGTCA 61.106 57.895 9.46 0.00 38.93 4.35
426 438 1.369091 AAGCACCGGAATCATGCGTC 61.369 55.000 9.46 0.00 44.25 5.19
427 439 1.369091 GAAGCACCGGAATCATGCGT 61.369 55.000 9.46 5.02 44.25 5.24
428 440 1.091771 AGAAGCACCGGAATCATGCG 61.092 55.000 9.46 0.00 44.25 4.73
443 455 8.881743 CATAATTCAGAAAGAGAGGACAAGAAG 58.118 37.037 0.00 0.00 0.00 2.85
470 482 5.450965 CCATTGTTGCAGAACTTCAAAGACT 60.451 40.000 0.00 0.00 32.79 3.24
472 484 4.402155 ACCATTGTTGCAGAACTTCAAAGA 59.598 37.500 0.00 0.00 32.79 2.52
473 485 4.505191 CACCATTGTTGCAGAACTTCAAAG 59.495 41.667 0.00 0.00 32.79 2.77
480 515 3.066621 TGAGTTCACCATTGTTGCAGAAC 59.933 43.478 3.68 3.68 36.32 3.01
543 691 1.135721 CAAGTAGTAGTACCGGGTGCC 59.864 57.143 10.66 0.00 0.00 5.01
545 693 3.350833 ACTCAAGTAGTAGTACCGGGTG 58.649 50.000 10.66 0.00 36.36 4.61
546 694 3.728385 ACTCAAGTAGTAGTACCGGGT 57.272 47.619 6.32 4.46 36.36 5.28
547 695 5.431765 TCTAACTCAAGTAGTAGTACCGGG 58.568 45.833 6.32 0.00 37.50 5.73
549 697 9.339492 CTTTTTCTAACTCAAGTAGTAGTACCG 57.661 37.037 4.02 0.00 37.50 4.02
553 701 8.628280 ACGACTTTTTCTAACTCAAGTAGTAGT 58.372 33.333 0.00 0.00 37.50 2.73
554 702 9.460906 AACGACTTTTTCTAACTCAAGTAGTAG 57.539 33.333 0.00 0.00 37.50 2.57
555 703 9.241317 CAACGACTTTTTCTAACTCAAGTAGTA 57.759 33.333 0.00 0.00 37.50 1.82
556 704 7.224167 CCAACGACTTTTTCTAACTCAAGTAGT 59.776 37.037 0.00 0.00 41.49 2.73
557 705 7.564988 CCAACGACTTTTTCTAACTCAAGTAG 58.435 38.462 0.00 0.00 29.43 2.57
558 706 6.018507 GCCAACGACTTTTTCTAACTCAAGTA 60.019 38.462 0.00 0.00 29.43 2.24
559 707 5.220796 GCCAACGACTTTTTCTAACTCAAGT 60.221 40.000 0.00 0.00 32.02 3.16
633 781 2.395690 CGGTTGCGCGTGAGATTC 59.604 61.111 8.43 0.00 0.00 2.52
636 784 2.215465 TATTCCGGTTGCGCGTGAGA 62.215 55.000 8.43 0.00 0.00 3.27
693 841 4.361783 TGGGAGTCACTATCAAGATTCCA 58.638 43.478 0.00 0.00 41.07 3.53
707 855 7.094334 CGCTACTCTTATATTACATGGGAGTCA 60.094 40.741 0.00 0.00 34.88 3.41
710 858 6.037098 GCGCTACTCTTATATTACATGGGAG 58.963 44.000 0.00 0.00 0.00 4.30
775 925 3.403057 CACGTTCACGGCAGGACG 61.403 66.667 4.07 6.25 44.95 4.79
796 946 1.227249 TTGGTCTTTGGTCTTCCCCA 58.773 50.000 0.00 0.00 0.00 4.96
801 954 2.154462 CTGCGATTGGTCTTTGGTCTT 58.846 47.619 0.00 0.00 0.00 3.01
830 984 9.245481 GGGTCTATGTATGCTAGACTAATTAGT 57.755 37.037 18.05 18.05 43.00 2.24
831 985 9.244292 TGGGTCTATGTATGCTAGACTAATTAG 57.756 37.037 11.05 11.05 43.00 1.73
832 986 9.596308 TTGGGTCTATGTATGCTAGACTAATTA 57.404 33.333 14.90 0.00 43.00 1.40
834 988 7.310113 GCTTGGGTCTATGTATGCTAGACTAAT 60.310 40.741 14.90 0.00 43.00 1.73
835 989 6.015350 GCTTGGGTCTATGTATGCTAGACTAA 60.015 42.308 14.90 11.38 43.00 2.24
838 992 4.561105 GCTTGGGTCTATGTATGCTAGAC 58.439 47.826 0.00 10.04 42.81 2.59
839 993 3.578716 GGCTTGGGTCTATGTATGCTAGA 59.421 47.826 0.00 0.00 0.00 2.43
840 994 3.615110 CGGCTTGGGTCTATGTATGCTAG 60.615 52.174 0.00 0.00 0.00 3.42
841 995 2.299013 CGGCTTGGGTCTATGTATGCTA 59.701 50.000 0.00 0.00 0.00 3.49
843 997 1.070134 TCGGCTTGGGTCTATGTATGC 59.930 52.381 0.00 0.00 0.00 3.14
862 1025 2.234143 ACTCCTGGCTTCTTTTGCTTC 58.766 47.619 0.00 0.00 0.00 3.86
864 1027 1.959282 CAACTCCTGGCTTCTTTTGCT 59.041 47.619 0.00 0.00 0.00 3.91
872 1035 3.152341 CAAGTGATTCAACTCCTGGCTT 58.848 45.455 0.00 0.00 0.00 4.35
908 1072 4.428209 CTTCTCTTCAGATCTAGCGCAAA 58.572 43.478 11.47 0.00 0.00 3.68
909 1073 3.736433 GCTTCTCTTCAGATCTAGCGCAA 60.736 47.826 11.47 0.00 0.00 4.85
936 1100 0.945099 CAGGCTAGTGATGCTGCATG 59.055 55.000 21.53 6.19 31.15 4.06
970 1136 1.600663 CGATGCTACTACGCTCAAGGG 60.601 57.143 0.00 0.00 0.00 3.95
981 1147 1.982660 TCTCCGAATCCGATGCTACT 58.017 50.000 0.00 0.00 38.22 2.57
993 1159 0.396556 TCATCCCCGTCATCTCCGAA 60.397 55.000 0.00 0.00 0.00 4.30
1060 1235 4.787280 CTCCTCCGGCTCCACCCT 62.787 72.222 0.00 0.00 33.26 4.34
1237 1413 2.366640 TAGCCGAGGAGAAGCATAGT 57.633 50.000 0.00 0.00 0.00 2.12
1240 1416 1.418334 ACATAGCCGAGGAGAAGCAT 58.582 50.000 0.00 0.00 0.00 3.79
1244 1420 3.366396 AGAGAAACATAGCCGAGGAGAA 58.634 45.455 0.00 0.00 0.00 2.87
1270 1481 3.431415 GAAACTAAGGCTGGATTTGGGT 58.569 45.455 0.00 0.00 0.00 4.51
1271 1482 2.760650 GGAAACTAAGGCTGGATTTGGG 59.239 50.000 0.00 0.00 0.00 4.12
1272 1483 3.445096 CAGGAAACTAAGGCTGGATTTGG 59.555 47.826 0.00 0.00 40.21 3.28
1273 1484 3.119352 GCAGGAAACTAAGGCTGGATTTG 60.119 47.826 0.00 0.00 40.21 2.32
1274 1485 3.092301 GCAGGAAACTAAGGCTGGATTT 58.908 45.455 0.00 0.00 40.21 2.17
1275 1486 2.310052 AGCAGGAAACTAAGGCTGGATT 59.690 45.455 0.00 0.00 40.21 3.01
1281 1492 0.744771 CCCGAGCAGGAAACTAAGGC 60.745 60.000 0.00 0.00 45.00 4.35
1310 1521 1.973138 CAAAAGAGGTTGCGATGCAG 58.027 50.000 0.00 0.00 40.61 4.41
1324 1535 0.109781 CGAACCCCGTCATGCAAAAG 60.110 55.000 0.00 0.00 0.00 2.27
1325 1536 0.535328 TCGAACCCCGTCATGCAAAA 60.535 50.000 0.00 0.00 39.75 2.44
1416 1642 1.135199 GTACTCCGATCCTCAACGCAA 60.135 52.381 0.00 0.00 0.00 4.85
1419 1645 1.334243 GGAGTACTCCGATCCTCAACG 59.666 57.143 25.83 0.00 40.36 4.10
1434 1660 1.339438 ACACGGCGTTCTCTAGGAGTA 60.339 52.381 11.19 0.00 0.00 2.59
1435 1661 0.608582 ACACGGCGTTCTCTAGGAGT 60.609 55.000 11.19 0.00 0.00 3.85
1436 1662 0.526662 AACACGGCGTTCTCTAGGAG 59.473 55.000 11.19 0.00 29.27 3.69
1437 1663 0.963962 AAACACGGCGTTCTCTAGGA 59.036 50.000 11.19 0.00 36.59 2.94
1438 1664 1.068474 CAAACACGGCGTTCTCTAGG 58.932 55.000 11.19 0.00 36.59 3.02
1439 1665 1.068474 CCAAACACGGCGTTCTCTAG 58.932 55.000 11.19 0.00 36.59 2.43
1449 1678 0.099791 AACGAAACTGCCAAACACGG 59.900 50.000 0.00 0.00 0.00 4.94
1462 1691 0.106918 ACCTCAACCAGCCAACGAAA 60.107 50.000 0.00 0.00 0.00 3.46
1465 1694 1.654220 CAACCTCAACCAGCCAACG 59.346 57.895 0.00 0.00 0.00 4.10
1466 1695 0.755327 ACCAACCTCAACCAGCCAAC 60.755 55.000 0.00 0.00 0.00 3.77
1467 1696 0.847373 TACCAACCTCAACCAGCCAA 59.153 50.000 0.00 0.00 0.00 4.52
1468 1697 1.072266 ATACCAACCTCAACCAGCCA 58.928 50.000 0.00 0.00 0.00 4.75
1469 1698 1.818674 CAATACCAACCTCAACCAGCC 59.181 52.381 0.00 0.00 0.00 4.85
1470 1699 1.818674 CCAATACCAACCTCAACCAGC 59.181 52.381 0.00 0.00 0.00 4.85
1471 1700 2.819608 CACCAATACCAACCTCAACCAG 59.180 50.000 0.00 0.00 0.00 4.00
1472 1701 2.175931 ACACCAATACCAACCTCAACCA 59.824 45.455 0.00 0.00 0.00 3.67
1473 1702 2.556622 CACACCAATACCAACCTCAACC 59.443 50.000 0.00 0.00 0.00 3.77
1474 1703 2.556622 CCACACCAATACCAACCTCAAC 59.443 50.000 0.00 0.00 0.00 3.18
1475 1704 2.443632 TCCACACCAATACCAACCTCAA 59.556 45.455 0.00 0.00 0.00 3.02
1476 1705 2.058705 TCCACACCAATACCAACCTCA 58.941 47.619 0.00 0.00 0.00 3.86
1487 1716 1.369692 CAGTAGCCGTCCACACCAA 59.630 57.895 0.00 0.00 0.00 3.67
1488 1717 3.056458 CAGTAGCCGTCCACACCA 58.944 61.111 0.00 0.00 0.00 4.17
1494 1723 0.807667 CATGACAGCAGTAGCCGTCC 60.808 60.000 1.84 0.00 45.49 4.79
1496 1725 1.448540 GCATGACAGCAGTAGCCGT 60.449 57.895 0.00 0.00 43.56 5.68
1497 1726 1.448365 TGCATGACAGCAGTAGCCG 60.448 57.895 0.00 0.00 43.56 5.52
1508 1737 0.882042 CATCCCCGCTACTGCATGAC 60.882 60.000 0.00 0.00 39.64 3.06
1510 1739 1.598962 CCATCCCCGCTACTGCATG 60.599 63.158 0.00 0.00 39.64 4.06
1512 1741 1.992834 TTCCATCCCCGCTACTGCA 60.993 57.895 0.00 0.00 39.64 4.41
1517 1746 1.209504 CAGAAAGTTCCATCCCCGCTA 59.790 52.381 0.00 0.00 0.00 4.26
1556 1807 2.171237 TGGACTAACCGATCCTCGAGTA 59.829 50.000 12.31 0.00 43.74 2.59
1560 1814 2.537401 GTTTGGACTAACCGATCCTCG 58.463 52.381 0.00 0.00 42.61 4.63
1608 1872 1.198637 GTCAGTGCAGATGCCACTTTC 59.801 52.381 1.72 0.00 41.18 2.62
1655 1930 0.389817 CGGATTGACGAGTTGCCAGA 60.390 55.000 0.00 0.00 35.47 3.86
1682 1957 1.195448 CGAGTGAAAATGCGAGTTGCT 59.805 47.619 3.50 0.00 46.63 3.91
1687 1962 1.298157 TGGCCGAGTGAAAATGCGAG 61.298 55.000 0.00 0.00 0.00 5.03
1705 1981 2.669391 GCAAACGAGGAAAGGCAAGATG 60.669 50.000 0.00 0.00 0.00 2.90
1710 1986 1.269448 GAATGCAAACGAGGAAAGGCA 59.731 47.619 0.00 0.00 35.54 4.75
1717 1993 3.908382 CGAAAGAAAGAATGCAAACGAGG 59.092 43.478 0.00 0.00 0.00 4.63
1719 1995 4.804608 TCGAAAGAAAGAATGCAAACGA 57.195 36.364 0.00 0.00 37.03 3.85
1738 2014 6.907212 GGCAGTATGTGATAGTGAAAAATTCG 59.093 38.462 0.00 0.00 38.22 3.34
1741 2017 7.112122 TCTGGCAGTATGTGATAGTGAAAAAT 58.888 34.615 15.27 0.00 38.22 1.82
1746 2022 5.675684 TTTCTGGCAGTATGTGATAGTGA 57.324 39.130 15.27 0.00 38.22 3.41
1755 2031 8.044060 TGTTAGAAAAGATTTCTGGCAGTATG 57.956 34.615 15.27 0.00 40.87 2.39
1803 2197 1.229131 TGGGACGGAGGGAGTAGTAT 58.771 55.000 0.00 0.00 0.00 2.12
1804 2198 1.229131 ATGGGACGGAGGGAGTAGTA 58.771 55.000 0.00 0.00 0.00 1.82
1805 2199 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
1806 2200 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
1807 2201 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
1808 2202 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
1809 2203 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
1810 2204 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
1811 2205 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
1812 2206 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
1813 2207 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
1814 2208 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
1841 2235 8.989980 GCTATTTCAAGTTGTTGAGTAGTACTT 58.010 33.333 0.00 0.00 43.66 2.24
1842 2236 8.368668 AGCTATTTCAAGTTGTTGAGTAGTACT 58.631 33.333 1.37 1.37 43.66 2.73
1843 2237 8.436200 CAGCTATTTCAAGTTGTTGAGTAGTAC 58.564 37.037 2.11 0.00 43.66 2.73
1844 2238 8.364894 TCAGCTATTTCAAGTTGTTGAGTAGTA 58.635 33.333 2.11 0.00 43.66 1.82
1845 2239 7.171678 GTCAGCTATTTCAAGTTGTTGAGTAGT 59.828 37.037 2.11 0.00 43.66 2.73
1846 2240 7.360438 GGTCAGCTATTTCAAGTTGTTGAGTAG 60.360 40.741 2.11 3.08 43.66 2.57
1887 2287 2.934553 GGATTGCGGAGTAAGTTACACC 59.065 50.000 16.99 16.99 34.31 4.16
1894 2294 3.125316 GTGTTCTTGGATTGCGGAGTAAG 59.875 47.826 0.00 0.00 34.31 2.34
1964 2403 4.681978 GGTGGACTTGGACGCGCT 62.682 66.667 5.73 0.00 0.00 5.92
2026 3534 6.059484 ACTCGGTCTTGGTAATTCTCAAAAA 58.941 36.000 0.00 0.00 0.00 1.94
2027 3535 5.617252 ACTCGGTCTTGGTAATTCTCAAAA 58.383 37.500 0.00 0.00 0.00 2.44
2028 3536 5.223449 ACTCGGTCTTGGTAATTCTCAAA 57.777 39.130 0.00 0.00 0.00 2.69
2029 3537 4.884668 ACTCGGTCTTGGTAATTCTCAA 57.115 40.909 0.00 0.00 0.00 3.02
2030 3538 4.401519 CCTACTCGGTCTTGGTAATTCTCA 59.598 45.833 0.00 0.00 0.00 3.27
2031 3539 4.643784 TCCTACTCGGTCTTGGTAATTCTC 59.356 45.833 0.00 0.00 0.00 2.87
2032 3540 4.607239 TCCTACTCGGTCTTGGTAATTCT 58.393 43.478 0.00 0.00 0.00 2.40
2033 3541 4.401837 ACTCCTACTCGGTCTTGGTAATTC 59.598 45.833 0.00 0.00 0.00 2.17
2034 3542 4.351127 ACTCCTACTCGGTCTTGGTAATT 58.649 43.478 0.00 0.00 0.00 1.40
2035 3543 3.978610 ACTCCTACTCGGTCTTGGTAAT 58.021 45.455 0.00 0.00 0.00 1.89
2036 3544 3.446442 ACTCCTACTCGGTCTTGGTAA 57.554 47.619 0.00 0.00 0.00 2.85
2037 3545 3.264193 TGTACTCCTACTCGGTCTTGGTA 59.736 47.826 0.00 0.00 0.00 3.25
2038 3546 2.040813 TGTACTCCTACTCGGTCTTGGT 59.959 50.000 0.00 0.00 0.00 3.67
2039 3547 2.719739 TGTACTCCTACTCGGTCTTGG 58.280 52.381 0.00 0.00 0.00 3.61
2040 3548 3.945921 TCATGTACTCCTACTCGGTCTTG 59.054 47.826 0.00 0.00 0.00 3.02
2041 3549 3.946558 GTCATGTACTCCTACTCGGTCTT 59.053 47.826 0.00 0.00 0.00 3.01
2218 3761 2.749621 GAGGTGCCAAGATTTGTACCAG 59.250 50.000 6.67 0.00 38.03 4.00
2219 3762 2.790433 GAGGTGCCAAGATTTGTACCA 58.210 47.619 6.67 0.00 38.03 3.25
2285 3828 1.375523 GGGGATGTCGACGTGCTTT 60.376 57.895 25.65 0.35 0.00 3.51
2500 4063 2.444256 GCCTCCTCCGGCTTACCAT 61.444 63.158 0.00 0.00 46.63 3.55
2501 4064 3.081409 GCCTCCTCCGGCTTACCA 61.081 66.667 0.00 0.00 46.63 3.25
2642 4208 2.095059 CACCACAGCAAGCCATTTCTAC 60.095 50.000 0.00 0.00 0.00 2.59
2666 4232 0.107897 CACGATTCCAATCACGGGGA 60.108 55.000 0.00 0.00 35.11 4.81
2668 4234 1.290203 CTCACGATTCCAATCACGGG 58.710 55.000 0.00 0.00 35.11 5.28
2670 4236 2.028045 CGAACTCACGATTCCAATCACG 59.972 50.000 0.00 0.00 35.11 4.35
2702 4303 2.201732 GCAAATCTCTATCGCCGTCAA 58.798 47.619 0.00 0.00 0.00 3.18
2706 4307 2.033407 CAGTTGCAAATCTCTATCGCCG 60.033 50.000 0.00 0.00 0.00 6.46
2734 4335 2.739913 CGTGAAGGGATGAAAAGCGTAA 59.260 45.455 0.00 0.00 0.00 3.18
2791 4414 6.092807 AGTTTTGAAGTTCTCTGTTCAGTCAC 59.907 38.462 4.17 0.00 34.25 3.67
2792 4415 6.092670 CAGTTTTGAAGTTCTCTGTTCAGTCA 59.907 38.462 4.17 0.00 34.25 3.41
2800 4423 4.985413 TGTTGCAGTTTTGAAGTTCTCTG 58.015 39.130 4.17 8.52 0.00 3.35
2804 4427 6.264909 CTTCATGTTGCAGTTTTGAAGTTC 57.735 37.500 16.42 0.00 38.82 3.01
2811 4434 5.971202 CGTCTTAACTTCATGTTGCAGTTTT 59.029 36.000 0.00 0.00 35.56 2.43
2905 4765 5.057149 GCATGAGTCTTGGGTTACGATAAT 58.943 41.667 8.02 0.00 0.00 1.28
2911 4771 2.237392 AGGAGCATGAGTCTTGGGTTAC 59.763 50.000 8.02 0.00 0.00 2.50
2930 4790 1.410517 ACACCGACATCTGCAGATAGG 59.589 52.381 28.27 28.63 32.63 2.57
3323 5194 2.291741 GCCCGAGAAAGCATAATTGGAG 59.708 50.000 0.00 0.00 0.00 3.86
3464 5339 2.361737 GCCCTTGCCTCTGGAACC 60.362 66.667 0.00 0.00 0.00 3.62
3566 5441 2.348666 CGCCTTGTCCTCAGAATTAACG 59.651 50.000 0.00 0.00 0.00 3.18
3647 5522 2.416547 CTGCTGGAACAACTGAATACCG 59.583 50.000 0.00 0.00 38.70 4.02
3770 5645 9.148104 ACCAGTATGAAAATCGTCTTAGTAAAC 57.852 33.333 0.00 0.00 39.69 2.01
3977 5852 2.170607 TCCCATCCCAATCGAGAAGAAC 59.829 50.000 0.00 0.00 0.00 3.01
3989 5864 0.473694 AGCATATCGGTCCCATCCCA 60.474 55.000 0.00 0.00 0.00 4.37
4308 6183 8.567285 AAAGATTTCTTGTCACCCTGTATTAG 57.433 34.615 0.00 0.00 36.12 1.73
4361 6236 7.340232 TGCTCTGCTGATTATATCAACCTTTTT 59.660 33.333 0.00 0.00 39.11 1.94
4362 6237 6.830324 TGCTCTGCTGATTATATCAACCTTTT 59.170 34.615 0.00 0.00 39.11 2.27
4363 6238 6.359804 TGCTCTGCTGATTATATCAACCTTT 58.640 36.000 0.00 0.00 39.11 3.11
4364 6239 5.933617 TGCTCTGCTGATTATATCAACCTT 58.066 37.500 0.00 0.00 39.11 3.50
4365 6240 5.557576 TGCTCTGCTGATTATATCAACCT 57.442 39.130 0.00 0.00 39.11 3.50
4366 6241 5.528690 TGTTGCTCTGCTGATTATATCAACC 59.471 40.000 0.00 0.00 39.11 3.77
4367 6242 6.609237 TGTTGCTCTGCTGATTATATCAAC 57.391 37.500 0.00 0.00 39.11 3.18
4368 6243 7.049754 TCTTGTTGCTCTGCTGATTATATCAA 58.950 34.615 0.00 0.00 39.11 2.57
4369 6244 6.585416 TCTTGTTGCTCTGCTGATTATATCA 58.415 36.000 0.00 0.00 37.76 2.15
4370 6245 7.488187 TTCTTGTTGCTCTGCTGATTATATC 57.512 36.000 0.00 0.00 0.00 1.63
4371 6246 6.017275 GCTTCTTGTTGCTCTGCTGATTATAT 60.017 38.462 0.00 0.00 0.00 0.86
4372 6247 5.295292 GCTTCTTGTTGCTCTGCTGATTATA 59.705 40.000 0.00 0.00 0.00 0.98
4373 6248 4.096081 GCTTCTTGTTGCTCTGCTGATTAT 59.904 41.667 0.00 0.00 0.00 1.28
4383 6258 1.661460 GCACGAAGCTTCTTGTTGCTC 60.661 52.381 27.69 11.86 38.75 4.26
4449 6324 3.215151 CTGAAGGCAGCTTCATCATCAT 58.785 45.455 5.95 0.00 41.76 2.45
4450 6325 2.640184 CTGAAGGCAGCTTCATCATCA 58.360 47.619 5.95 0.00 41.76 3.07
4488 6363 2.772287 GCAGTAAAGTCCTGTTGAGCT 58.228 47.619 0.00 0.00 32.41 4.09
4594 6469 2.030274 GGTAAAACAGCATTGCGTCCTT 60.030 45.455 2.38 5.03 0.00 3.36
4600 6475 2.610232 CCACCAGGTAAAACAGCATTGC 60.610 50.000 0.00 0.00 0.00 3.56
4640 6515 1.479323 GGGCCGCCGACTATATATTGA 59.521 52.381 2.55 0.00 0.00 2.57
4641 6516 1.206132 TGGGCCGCCGACTATATATTG 59.794 52.381 2.55 0.00 0.00 1.90
4642 6517 1.480954 CTGGGCCGCCGACTATATATT 59.519 52.381 2.55 0.00 0.00 1.28
4643 6518 1.112113 CTGGGCCGCCGACTATATAT 58.888 55.000 2.55 0.00 0.00 0.86
4644 6519 0.251474 ACTGGGCCGCCGACTATATA 60.251 55.000 2.55 0.00 0.00 0.86
4645 6520 1.533273 ACTGGGCCGCCGACTATAT 60.533 57.895 2.55 0.00 0.00 0.86
4646 6521 2.123597 ACTGGGCCGCCGACTATA 60.124 61.111 2.55 0.00 0.00 1.31
4647 6522 3.849951 CACTGGGCCGCCGACTAT 61.850 66.667 2.55 0.00 0.00 2.12
4648 6523 3.942377 TACACTGGGCCGCCGACTA 62.942 63.158 2.55 0.00 0.00 2.59
4650 6525 4.814294 CTACACTGGGCCGCCGAC 62.814 72.222 2.55 0.00 0.00 4.79
4655 6530 3.989698 CTGTCGCTACACTGGGCCG 62.990 68.421 0.00 0.00 0.00 6.13
4656 6531 2.125512 CTGTCGCTACACTGGGCC 60.126 66.667 0.00 0.00 0.00 5.80
4657 6532 0.602905 AAACTGTCGCTACACTGGGC 60.603 55.000 0.00 0.00 0.00 5.36
4658 6533 1.148310 CAAACTGTCGCTACACTGGG 58.852 55.000 0.00 0.00 0.00 4.45
4659 6534 1.865865 ACAAACTGTCGCTACACTGG 58.134 50.000 0.00 0.00 0.00 4.00
4660 6535 2.599848 GCAACAAACTGTCGCTACACTG 60.600 50.000 0.00 0.00 25.48 3.66
4661 6536 1.597663 GCAACAAACTGTCGCTACACT 59.402 47.619 0.00 0.00 25.48 3.55
4662 6537 1.597663 AGCAACAAACTGTCGCTACAC 59.402 47.619 0.00 0.00 39.13 2.90
4663 6538 1.948104 AGCAACAAACTGTCGCTACA 58.052 45.000 0.00 0.00 39.13 2.74
4664 6539 3.739300 TCTAAGCAACAAACTGTCGCTAC 59.261 43.478 0.00 0.00 40.17 3.58
4665 6540 3.739300 GTCTAAGCAACAAACTGTCGCTA 59.261 43.478 0.00 0.00 40.17 4.26
4666 6541 2.544267 GTCTAAGCAACAAACTGTCGCT 59.456 45.455 0.00 0.00 43.41 4.93
4667 6542 2.659291 CGTCTAAGCAACAAACTGTCGC 60.659 50.000 0.00 0.00 28.57 5.19
4668 6543 2.096909 CCGTCTAAGCAACAAACTGTCG 60.097 50.000 0.00 0.00 0.00 4.35
4669 6544 2.349532 GCCGTCTAAGCAACAAACTGTC 60.350 50.000 0.00 0.00 0.00 3.51
4670 6545 1.602377 GCCGTCTAAGCAACAAACTGT 59.398 47.619 0.00 0.00 0.00 3.55
4671 6546 1.398451 CGCCGTCTAAGCAACAAACTG 60.398 52.381 0.00 0.00 0.00 3.16
4672 6547 0.865769 CGCCGTCTAAGCAACAAACT 59.134 50.000 0.00 0.00 0.00 2.66
4673 6548 0.110373 CCGCCGTCTAAGCAACAAAC 60.110 55.000 0.00 0.00 0.00 2.93
4674 6549 1.847890 GCCGCCGTCTAAGCAACAAA 61.848 55.000 0.00 0.00 0.00 2.83
4675 6550 2.322081 GCCGCCGTCTAAGCAACAA 61.322 57.895 0.00 0.00 0.00 2.83
4676 6551 2.725203 AAGCCGCCGTCTAAGCAACA 62.725 55.000 0.00 0.00 0.00 3.33
4677 6552 1.574702 AAAGCCGCCGTCTAAGCAAC 61.575 55.000 0.00 0.00 0.00 4.17
4678 6553 0.037139 TAAAGCCGCCGTCTAAGCAA 60.037 50.000 0.00 0.00 0.00 3.91
4679 6554 0.459585 CTAAAGCCGCCGTCTAAGCA 60.460 55.000 0.00 0.00 0.00 3.91
4680 6555 1.763200 GCTAAAGCCGCCGTCTAAGC 61.763 60.000 0.00 0.00 34.31 3.09
4681 6556 2.298593 GCTAAAGCCGCCGTCTAAG 58.701 57.895 0.00 0.00 34.31 2.18
4682 6557 4.507879 GCTAAAGCCGCCGTCTAA 57.492 55.556 0.00 0.00 34.31 2.10
4692 6567 5.875359 AGTCATACAACAGTAAGGCTAAAGC 59.125 40.000 0.00 0.00 41.14 3.51
4693 6568 7.907214 AAGTCATACAACAGTAAGGCTAAAG 57.093 36.000 0.00 0.00 0.00 1.85
4694 6569 7.717875 ACAAAGTCATACAACAGTAAGGCTAAA 59.282 33.333 0.00 0.00 0.00 1.85
4695 6570 7.221450 ACAAAGTCATACAACAGTAAGGCTAA 58.779 34.615 0.00 0.00 0.00 3.09
4696 6571 6.765403 ACAAAGTCATACAACAGTAAGGCTA 58.235 36.000 0.00 0.00 0.00 3.93
4697 6572 5.621193 ACAAAGTCATACAACAGTAAGGCT 58.379 37.500 0.00 0.00 0.00 4.58
4698 6573 5.941948 ACAAAGTCATACAACAGTAAGGC 57.058 39.130 0.00 0.00 0.00 4.35
4699 6574 8.029642 CCTTACAAAGTCATACAACAGTAAGG 57.970 38.462 12.05 12.05 46.02 2.69
4700 6575 8.603242 ACCTTACAAAGTCATACAACAGTAAG 57.397 34.615 0.00 0.00 37.80 2.34
4701 6576 8.426489 AGACCTTACAAAGTCATACAACAGTAA 58.574 33.333 0.00 0.00 0.00 2.24
4702 6577 7.959175 AGACCTTACAAAGTCATACAACAGTA 58.041 34.615 0.00 0.00 0.00 2.74
4703 6578 6.827727 AGACCTTACAAAGTCATACAACAGT 58.172 36.000 0.00 0.00 0.00 3.55
4704 6579 7.226720 ACAAGACCTTACAAAGTCATACAACAG 59.773 37.037 0.00 0.00 0.00 3.16
4705 6580 7.011950 CACAAGACCTTACAAAGTCATACAACA 59.988 37.037 0.00 0.00 0.00 3.33
4706 6581 7.225931 TCACAAGACCTTACAAAGTCATACAAC 59.774 37.037 0.00 0.00 0.00 3.32
4707 6582 7.276658 TCACAAGACCTTACAAAGTCATACAA 58.723 34.615 0.00 0.00 0.00 2.41
4708 6583 6.822442 TCACAAGACCTTACAAAGTCATACA 58.178 36.000 0.00 0.00 0.00 2.29
4709 6584 7.152645 TCTCACAAGACCTTACAAAGTCATAC 58.847 38.462 0.00 0.00 0.00 2.39
4710 6585 7.297936 TCTCACAAGACCTTACAAAGTCATA 57.702 36.000 0.00 0.00 0.00 2.15
4711 6586 6.174720 TCTCACAAGACCTTACAAAGTCAT 57.825 37.500 0.00 0.00 0.00 3.06
4712 6587 5.607939 TCTCACAAGACCTTACAAAGTCA 57.392 39.130 0.00 0.00 0.00 3.41
4713 6588 8.603242 TTATTCTCACAAGACCTTACAAAGTC 57.397 34.615 0.00 0.00 0.00 3.01
4714 6589 9.574516 AATTATTCTCACAAGACCTTACAAAGT 57.425 29.630 0.00 0.00 0.00 2.66
4726 6601 9.736023 GGCCACTTTATTAATTATTCTCACAAG 57.264 33.333 0.00 0.00 0.00 3.16
4727 6602 8.402472 CGGCCACTTTATTAATTATTCTCACAA 58.598 33.333 2.24 0.00 0.00 3.33
4728 6603 7.554835 ACGGCCACTTTATTAATTATTCTCACA 59.445 33.333 2.24 0.00 0.00 3.58
4729 6604 7.927048 ACGGCCACTTTATTAATTATTCTCAC 58.073 34.615 2.24 0.00 0.00 3.51
4730 6605 9.787435 ATACGGCCACTTTATTAATTATTCTCA 57.213 29.630 2.24 0.00 0.00 3.27
4732 6607 8.512138 GCATACGGCCACTTTATTAATTATTCT 58.488 33.333 2.24 0.00 36.11 2.40
4733 6608 8.293867 TGCATACGGCCACTTTATTAATTATTC 58.706 33.333 2.24 0.00 43.89 1.75
4734 6609 8.172352 TGCATACGGCCACTTTATTAATTATT 57.828 30.769 2.24 0.00 43.89 1.40
4735 6610 7.753309 TGCATACGGCCACTTTATTAATTAT 57.247 32.000 2.24 0.00 43.89 1.28
4736 6611 7.360522 CGATGCATACGGCCACTTTATTAATTA 60.361 37.037 2.24 0.00 43.89 1.40
4737 6612 6.567701 CGATGCATACGGCCACTTTATTAATT 60.568 38.462 2.24 0.00 43.89 1.40
4738 6613 5.106712 CGATGCATACGGCCACTTTATTAAT 60.107 40.000 2.24 0.00 43.89 1.40
4739 6614 4.212425 CGATGCATACGGCCACTTTATTAA 59.788 41.667 2.24 0.00 43.89 1.40
4740 6615 3.743911 CGATGCATACGGCCACTTTATTA 59.256 43.478 2.24 0.00 43.89 0.98
4741 6616 2.548057 CGATGCATACGGCCACTTTATT 59.452 45.455 2.24 0.00 43.89 1.40
4742 6617 2.143122 CGATGCATACGGCCACTTTAT 58.857 47.619 2.24 0.00 43.89 1.40
4743 6618 1.577468 CGATGCATACGGCCACTTTA 58.423 50.000 2.24 0.00 43.89 1.85
4744 6619 1.714899 GCGATGCATACGGCCACTTT 61.715 55.000 16.56 0.00 43.89 2.66
4745 6620 2.180204 GCGATGCATACGGCCACTT 61.180 57.895 16.56 0.00 43.89 3.16
4746 6621 2.588877 GCGATGCATACGGCCACT 60.589 61.111 16.56 0.00 43.89 4.00
4751 6626 1.004560 ATCTGGGCGATGCATACGG 60.005 57.895 16.56 6.65 0.00 4.02
4752 6627 2.156542 CATCTGGGCGATGCATACG 58.843 57.895 0.00 6.68 42.75 3.06
4759 6634 2.827423 CCTCTGCATCTGGGCGAT 59.173 61.111 0.00 0.00 36.28 4.58
4760 6635 4.166888 GCCTCTGCATCTGGGCGA 62.167 66.667 0.00 0.00 37.47 5.54
4763 6638 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
4764 6639 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
4765 6640 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
4771 6646 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
4774 6649 4.760220 AAGGATGACCCCCGGCCT 62.760 66.667 0.00 0.00 36.73 5.19
4775 6650 4.191015 GAAGGATGACCCCCGGCC 62.191 72.222 0.00 0.00 36.73 6.13
4776 6651 2.211468 AAAGAAGGATGACCCCCGGC 62.211 60.000 0.00 0.00 36.73 6.13
4777 6652 0.331616 AAAAGAAGGATGACCCCCGG 59.668 55.000 0.00 0.00 36.73 5.73
4778 6653 1.282157 AGAAAAGAAGGATGACCCCCG 59.718 52.381 0.00 0.00 36.73 5.73
4779 6654 4.586306 TTAGAAAAGAAGGATGACCCCC 57.414 45.455 0.00 0.00 36.73 5.40
4780 6655 6.911250 TTTTTAGAAAAGAAGGATGACCCC 57.089 37.500 0.00 0.00 36.73 4.95
4966 6843 4.332428 AATTTAATACTAGCTCGGCCGT 57.668 40.909 27.15 8.80 0.00 5.68
5009 6886 8.458573 ACCACAATCAGTAGTATTCTAGAGAG 57.541 38.462 0.00 0.00 0.00 3.20
5024 6901 3.691049 AACACAACGAACCACAATCAG 57.309 42.857 0.00 0.00 0.00 2.90
5056 6933 7.010738 ACACTTTCAAAGATTGCAAGTTCATTG 59.989 33.333 3.49 8.36 42.98 2.82
5057 6934 7.043565 ACACTTTCAAAGATTGCAAGTTCATT 58.956 30.769 3.49 0.00 42.98 2.57
5097 6974 3.769844 CACTTGTCATGTAGGGGTAGAGT 59.230 47.826 0.00 0.00 0.00 3.24
5103 6980 2.198827 TTGCACTTGTCATGTAGGGG 57.801 50.000 0.00 0.00 0.00 4.79
5104 6981 4.276678 CCATATTGCACTTGTCATGTAGGG 59.723 45.833 0.00 0.00 0.00 3.53
5111 6988 2.094597 GCTTGCCATATTGCACTTGTCA 60.095 45.455 0.00 0.00 41.88 3.58
5178 7055 6.707440 TGTGTTCTTTTGGCTAATTCTTCA 57.293 33.333 0.00 0.00 0.00 3.02
5214 7091 0.813610 TTGTGGCACTCCTGTTGTCG 60.814 55.000 19.83 0.00 0.00 4.35
5233 7110 2.629617 CTCCCTGCAACTTTCAAATGGT 59.370 45.455 0.00 0.00 0.00 3.55
5259 7136 1.477553 TCAGATTTCAATGGGCAGCC 58.522 50.000 1.26 1.26 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.