Multiple sequence alignment - TraesCS2D01G368700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G368700 chr2D 100.000 5785 0 0 1 5785 473164169 473169953 0.000000e+00 10683
1 TraesCS2D01G368700 chr2B 90.556 1980 96 24 3805 5766 553573459 553575365 0.000000e+00 2536
2 TraesCS2D01G368700 chr2B 89.098 1917 91 34 596 2454 553571172 553573028 0.000000e+00 2274
3 TraesCS2D01G368700 chr2B 89.135 451 35 6 3164 3612 553573024 553573462 3.050000e-152 549
4 TraesCS2D01G368700 chr2B 90.441 408 17 5 596 1003 553557434 553557049 8.590000e-143 518
5 TraesCS2D01G368700 chr2B 92.000 200 10 1 3612 3805 202377045 202376846 5.710000e-70 276
6 TraesCS2D01G368700 chr2B 92.000 200 10 1 3612 3805 202399244 202399045 5.710000e-70 276
7 TraesCS2D01G368700 chr2B 90.291 206 14 1 3605 3804 109287471 109287266 1.240000e-66 265
8 TraesCS2D01G368700 chr2A 92.783 1247 66 8 3805 5047 615289578 615290804 0.000000e+00 1783
9 TraesCS2D01G368700 chr2A 88.215 1451 75 38 597 1974 615286470 615287897 0.000000e+00 1644
10 TraesCS2D01G368700 chr2A 91.410 454 28 2 3170 3612 615289128 615289581 3.830000e-171 612
11 TraesCS2D01G368700 chr2A 81.363 719 85 28 2457 3164 734586285 734585605 1.830000e-149 540
12 TraesCS2D01G368700 chr2A 83.619 641 35 23 5179 5776 615291595 615292208 6.600000e-149 538
13 TraesCS2D01G368700 chr2A 88.627 255 24 2 2202 2454 615288875 615289126 7.280000e-79 305
14 TraesCS2D01G368700 chr2A 88.793 232 23 3 1 230 615267520 615267750 1.230000e-71 281
15 TraesCS2D01G368700 chr2A 91.753 194 10 1 3619 3806 445942604 445942411 1.240000e-66 265
16 TraesCS2D01G368700 chr2A 89.655 203 19 2 226 428 615285221 615285421 2.070000e-64 257
17 TraesCS2D01G368700 chr2A 93.143 175 11 1 425 599 615285447 615285620 7.440000e-64 255
18 TraesCS2D01G368700 chr5A 85.588 680 87 5 2459 3132 559458510 559457836 0.000000e+00 702
19 TraesCS2D01G368700 chr7B 83.721 731 87 19 2457 3166 475270309 475269590 0.000000e+00 662
20 TraesCS2D01G368700 chr7B 92.347 196 9 1 3615 3804 711877050 711876855 2.050000e-69 274
21 TraesCS2D01G368700 chr6B 83.629 733 76 26 2458 3169 473043316 473042607 0.000000e+00 649
22 TraesCS2D01G368700 chr6B 82.864 426 56 10 2740 3164 662149822 662150231 3.290000e-97 366
23 TraesCS2D01G368700 chr6D 86.201 558 64 10 2458 3010 306114269 306113720 4.990000e-165 592
24 TraesCS2D01G368700 chr1B 81.704 716 108 18 2457 3158 625771021 625771727 5.030000e-160 575
25 TraesCS2D01G368700 chr6A 84.688 529 67 11 2458 2980 441452737 441452217 3.090000e-142 516
26 TraesCS2D01G368700 chr7A 78.326 729 123 19 2459 3162 723562514 723563232 6.880000e-119 438
27 TraesCS2D01G368700 chr7A 78.684 699 110 24 2489 3162 723600278 723600962 4.140000e-116 429
28 TraesCS2D01G368700 chr7D 83.093 485 73 5 2688 3166 629775945 629776426 3.200000e-117 433
29 TraesCS2D01G368700 chr7D 85.849 318 38 5 2458 2772 596096865 596097178 1.200000e-86 331
30 TraesCS2D01G368700 chrUn 91.935 310 20 2 2457 2766 37077751 37078055 4.140000e-116 429
31 TraesCS2D01G368700 chr3D 80.545 514 76 15 2458 2962 589773890 589773392 1.970000e-99 374
32 TraesCS2D01G368700 chr3B 91.919 198 10 1 3611 3802 716462588 716462785 7.390000e-69 272
33 TraesCS2D01G368700 chr3B 91.919 198 10 1 3611 3802 716526615 716526812 7.390000e-69 272
34 TraesCS2D01G368700 chr3B 91.457 199 11 1 3612 3804 227430931 227430733 9.550000e-68 268
35 TraesCS2D01G368700 chr4A 91.237 194 16 1 3612 3805 705229691 705229499 4.450000e-66 263
36 TraesCS2D01G368700 chr4B 81.659 229 38 4 2937 3163 634312587 634312361 2.750000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G368700 chr2D 473164169 473169953 5784 False 10683.000000 10683 100.000000 1 5785 1 chr2D.!!$F1 5784
1 TraesCS2D01G368700 chr2B 553571172 553575365 4193 False 1786.333333 2536 89.596333 596 5766 3 chr2B.!!$F1 5170
2 TraesCS2D01G368700 chr2A 615285221 615292208 6987 False 770.571429 1783 89.636000 226 5776 7 chr2A.!!$F2 5550
3 TraesCS2D01G368700 chr2A 734585605 734586285 680 True 540.000000 540 81.363000 2457 3164 1 chr2A.!!$R2 707
4 TraesCS2D01G368700 chr5A 559457836 559458510 674 True 702.000000 702 85.588000 2459 3132 1 chr5A.!!$R1 673
5 TraesCS2D01G368700 chr7B 475269590 475270309 719 True 662.000000 662 83.721000 2457 3166 1 chr7B.!!$R1 709
6 TraesCS2D01G368700 chr6B 473042607 473043316 709 True 649.000000 649 83.629000 2458 3169 1 chr6B.!!$R1 711
7 TraesCS2D01G368700 chr6D 306113720 306114269 549 True 592.000000 592 86.201000 2458 3010 1 chr6D.!!$R1 552
8 TraesCS2D01G368700 chr1B 625771021 625771727 706 False 575.000000 575 81.704000 2457 3158 1 chr1B.!!$F1 701
9 TraesCS2D01G368700 chr6A 441452217 441452737 520 True 516.000000 516 84.688000 2458 2980 1 chr6A.!!$R1 522
10 TraesCS2D01G368700 chr7A 723562514 723563232 718 False 438.000000 438 78.326000 2459 3162 1 chr7A.!!$F1 703
11 TraesCS2D01G368700 chr7A 723600278 723600962 684 False 429.000000 429 78.684000 2489 3162 1 chr7A.!!$F2 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 499 0.100503 CGGGGATGAAATTTCCGCAC 59.899 55.000 15.48 8.22 44.24 5.34 F
953 1838 0.111089 CACAACAAACGCGCTCTCTC 60.111 55.000 5.73 0.00 0.00 3.20 F
1267 2173 0.249120 TCGGCATGTTGATCCGTCTT 59.751 50.000 8.30 0.00 43.35 3.01 F
1630 2555 0.459237 CTGGGAAGCTCGCTGTACAG 60.459 60.000 18.93 18.93 0.00 2.74 F
1880 2844 1.004560 CGCTGGACCATGTCAGTGT 60.005 57.895 0.00 0.00 33.68 3.55 F
3474 5321 1.089920 CTCGACCAATTTGAGCTGGG 58.910 55.000 0.00 0.00 37.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1287 2199 0.039074 CGGATCAGTATCTCGCCACC 60.039 60.000 0.00 0.0 32.29 4.61 R
2923 4757 0.317436 GATGCAAACGCAACGAACCA 60.317 50.000 0.00 0.0 44.09 3.67 R
3104 4945 0.477202 AGCATATCTGGGAGGGCCAT 60.477 55.000 6.18 0.0 35.15 4.40 R
3487 5334 1.072806 TCATGCTGTTGCCTCTCTGTT 59.927 47.619 0.00 0.0 38.71 3.16 R
3671 5524 0.248289 TAACCGACCAAGCACTAGCC 59.752 55.000 0.00 0.0 43.56 3.93 R
5065 6926 0.178998 ACCAGATCCAGATGCCATGC 60.179 55.000 0.00 0.0 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.016318 TCACCAATGACATTCGCATCC 58.984 47.619 0.00 0.00 0.00 3.51
35 36 1.016627 ACCAATGACATTCGCATCCG 58.983 50.000 0.00 0.00 0.00 4.18
36 37 0.308684 CCAATGACATTCGCATCCGG 59.691 55.000 0.00 0.00 34.56 5.14
37 38 0.317269 CAATGACATTCGCATCCGGC 60.317 55.000 0.00 0.00 39.90 6.13
38 39 0.464373 AATGACATTCGCATCCGGCT 60.464 50.000 0.00 0.00 41.67 5.52
39 40 0.464373 ATGACATTCGCATCCGGCTT 60.464 50.000 0.00 0.00 41.67 4.35
40 41 1.089481 TGACATTCGCATCCGGCTTC 61.089 55.000 0.00 0.00 41.67 3.86
41 42 1.078497 ACATTCGCATCCGGCTTCA 60.078 52.632 0.00 0.00 41.67 3.02
42 43 0.464373 ACATTCGCATCCGGCTTCAT 60.464 50.000 0.00 0.00 41.67 2.57
43 44 1.202639 ACATTCGCATCCGGCTTCATA 60.203 47.619 0.00 0.00 41.67 2.15
44 45 1.462283 CATTCGCATCCGGCTTCATAG 59.538 52.381 0.00 0.00 41.67 2.23
45 46 0.249868 TTCGCATCCGGCTTCATAGG 60.250 55.000 0.00 0.00 41.67 2.57
46 47 1.112916 TCGCATCCGGCTTCATAGGA 61.113 55.000 0.00 0.00 41.67 2.94
47 48 0.249868 CGCATCCGGCTTCATAGGAA 60.250 55.000 0.00 0.00 41.67 3.36
48 49 1.609061 CGCATCCGGCTTCATAGGAAT 60.609 52.381 0.00 0.00 41.67 3.01
49 50 2.353704 CGCATCCGGCTTCATAGGAATA 60.354 50.000 0.00 0.00 41.67 1.75
50 51 3.674997 GCATCCGGCTTCATAGGAATAA 58.325 45.455 0.00 0.00 40.25 1.40
51 52 3.686726 GCATCCGGCTTCATAGGAATAAG 59.313 47.826 0.00 0.00 40.25 1.73
52 53 3.402628 TCCGGCTTCATAGGAATAAGC 57.597 47.619 0.00 0.00 43.85 3.09
53 54 2.069273 CCGGCTTCATAGGAATAAGCG 58.931 52.381 0.00 0.00 45.18 4.68
54 55 2.548067 CCGGCTTCATAGGAATAAGCGT 60.548 50.000 0.00 0.00 45.18 5.07
55 56 2.476619 CGGCTTCATAGGAATAAGCGTG 59.523 50.000 0.00 0.00 45.18 5.34
56 57 3.728845 GGCTTCATAGGAATAAGCGTGA 58.271 45.455 0.00 0.00 45.18 4.35
57 58 4.319177 GGCTTCATAGGAATAAGCGTGAT 58.681 43.478 0.00 0.00 45.18 3.06
58 59 4.153117 GGCTTCATAGGAATAAGCGTGATG 59.847 45.833 0.00 0.00 45.18 3.07
59 60 4.991056 GCTTCATAGGAATAAGCGTGATGA 59.009 41.667 0.00 0.00 36.59 2.92
60 61 5.119898 GCTTCATAGGAATAAGCGTGATGAG 59.880 44.000 0.00 0.00 36.59 2.90
61 62 4.560128 TCATAGGAATAAGCGTGATGAGC 58.440 43.478 0.00 0.00 0.00 4.26
62 63 2.246719 AGGAATAAGCGTGATGAGCC 57.753 50.000 0.00 0.00 34.64 4.70
63 64 1.202698 AGGAATAAGCGTGATGAGCCC 60.203 52.381 0.00 0.00 34.64 5.19
64 65 1.202698 GGAATAAGCGTGATGAGCCCT 60.203 52.381 0.00 0.00 34.64 5.19
65 66 2.565841 GAATAAGCGTGATGAGCCCTT 58.434 47.619 0.00 0.00 34.64 3.95
66 67 2.717639 ATAAGCGTGATGAGCCCTTT 57.282 45.000 0.00 0.00 34.64 3.11
67 68 3.838244 ATAAGCGTGATGAGCCCTTTA 57.162 42.857 0.00 0.00 34.64 1.85
68 69 2.717639 AAGCGTGATGAGCCCTTTAT 57.282 45.000 0.00 0.00 34.64 1.40
69 70 2.717639 AGCGTGATGAGCCCTTTATT 57.282 45.000 0.00 0.00 34.64 1.40
70 71 3.838244 AGCGTGATGAGCCCTTTATTA 57.162 42.857 0.00 0.00 34.64 0.98
71 72 4.150897 AGCGTGATGAGCCCTTTATTAA 57.849 40.909 0.00 0.00 34.64 1.40
72 73 4.130118 AGCGTGATGAGCCCTTTATTAAG 58.870 43.478 0.00 0.00 34.64 1.85
73 74 3.304057 GCGTGATGAGCCCTTTATTAAGC 60.304 47.826 0.00 0.00 0.00 3.09
74 75 3.059597 CGTGATGAGCCCTTTATTAAGCG 60.060 47.826 0.00 0.00 0.00 4.68
75 76 4.127171 GTGATGAGCCCTTTATTAAGCGA 58.873 43.478 0.00 0.00 0.00 4.93
76 77 4.757149 GTGATGAGCCCTTTATTAAGCGAT 59.243 41.667 0.00 0.00 0.00 4.58
77 78 4.756642 TGATGAGCCCTTTATTAAGCGATG 59.243 41.667 0.00 0.00 0.00 3.84
78 79 2.878406 TGAGCCCTTTATTAAGCGATGC 59.122 45.455 0.00 0.00 0.00 3.91
79 80 1.873591 AGCCCTTTATTAAGCGATGCG 59.126 47.619 0.00 0.00 0.00 4.73
80 81 1.871039 GCCCTTTATTAAGCGATGCGA 59.129 47.619 0.00 0.00 0.00 5.10
81 82 2.289547 GCCCTTTATTAAGCGATGCGAA 59.710 45.455 0.00 0.00 0.00 4.70
82 83 3.058224 GCCCTTTATTAAGCGATGCGAAT 60.058 43.478 0.00 0.00 0.00 3.34
83 84 4.712763 CCCTTTATTAAGCGATGCGAATC 58.287 43.478 0.00 0.00 0.00 2.52
84 85 4.378459 CCCTTTATTAAGCGATGCGAATCC 60.378 45.833 0.00 0.00 0.00 3.01
85 86 4.452455 CCTTTATTAAGCGATGCGAATCCT 59.548 41.667 0.00 0.00 0.00 3.24
86 87 5.389935 CCTTTATTAAGCGATGCGAATCCTC 60.390 44.000 0.00 0.00 0.00 3.71
87 88 2.890808 TTAAGCGATGCGAATCCTCT 57.109 45.000 0.00 0.00 0.00 3.69
88 89 2.140065 TAAGCGATGCGAATCCTCTG 57.860 50.000 0.00 0.00 0.00 3.35
89 90 1.156645 AAGCGATGCGAATCCTCTGC 61.157 55.000 0.00 0.00 0.00 4.26
90 91 2.602322 GCGATGCGAATCCTCTGCC 61.602 63.158 0.00 0.00 0.00 4.85
91 92 1.227350 CGATGCGAATCCTCTGCCA 60.227 57.895 0.00 0.00 0.00 4.92
92 93 0.602106 CGATGCGAATCCTCTGCCAT 60.602 55.000 0.00 0.00 0.00 4.40
93 94 1.155042 GATGCGAATCCTCTGCCATC 58.845 55.000 0.00 0.00 0.00 3.51
94 95 0.471191 ATGCGAATCCTCTGCCATCA 59.529 50.000 0.00 0.00 0.00 3.07
95 96 0.462581 TGCGAATCCTCTGCCATCAC 60.463 55.000 0.00 0.00 0.00 3.06
96 97 1.162800 GCGAATCCTCTGCCATCACC 61.163 60.000 0.00 0.00 0.00 4.02
97 98 0.178767 CGAATCCTCTGCCATCACCA 59.821 55.000 0.00 0.00 0.00 4.17
98 99 1.202734 CGAATCCTCTGCCATCACCAT 60.203 52.381 0.00 0.00 0.00 3.55
99 100 2.502295 GAATCCTCTGCCATCACCATC 58.498 52.381 0.00 0.00 0.00 3.51
100 101 1.817087 ATCCTCTGCCATCACCATCT 58.183 50.000 0.00 0.00 0.00 2.90
101 102 2.477104 TCCTCTGCCATCACCATCTA 57.523 50.000 0.00 0.00 0.00 1.98
102 103 2.763039 TCCTCTGCCATCACCATCTAA 58.237 47.619 0.00 0.00 0.00 2.10
103 104 3.114606 TCCTCTGCCATCACCATCTAAA 58.885 45.455 0.00 0.00 0.00 1.85
104 105 3.523157 TCCTCTGCCATCACCATCTAAAA 59.477 43.478 0.00 0.00 0.00 1.52
105 106 4.166725 TCCTCTGCCATCACCATCTAAAAT 59.833 41.667 0.00 0.00 0.00 1.82
106 107 4.891756 CCTCTGCCATCACCATCTAAAATT 59.108 41.667 0.00 0.00 0.00 1.82
107 108 5.361857 CCTCTGCCATCACCATCTAAAATTT 59.638 40.000 0.00 0.00 0.00 1.82
108 109 6.127253 CCTCTGCCATCACCATCTAAAATTTT 60.127 38.462 8.75 8.75 0.00 1.82
109 110 7.068593 CCTCTGCCATCACCATCTAAAATTTTA 59.931 37.037 10.16 10.16 0.00 1.52
110 111 7.999679 TCTGCCATCACCATCTAAAATTTTAG 58.000 34.615 25.70 25.70 41.10 1.85
111 112 7.068593 TCTGCCATCACCATCTAAAATTTTAGG 59.931 37.037 29.04 20.25 40.35 2.69
112 113 6.894654 TGCCATCACCATCTAAAATTTTAGGA 59.105 34.615 29.04 20.73 40.35 2.94
113 114 7.068593 TGCCATCACCATCTAAAATTTTAGGAG 59.931 37.037 29.04 22.46 40.35 3.69
114 115 7.470563 GCCATCACCATCTAAAATTTTAGGAGG 60.471 40.741 29.04 28.91 40.35 4.30
115 116 7.014615 CCATCACCATCTAAAATTTTAGGAGGG 59.985 40.741 31.05 28.30 40.35 4.30
116 117 5.891551 TCACCATCTAAAATTTTAGGAGGGC 59.108 40.000 31.05 0.00 40.35 5.19
117 118 5.893824 CACCATCTAAAATTTTAGGAGGGCT 59.106 40.000 31.05 19.82 40.35 5.19
118 119 5.893824 ACCATCTAAAATTTTAGGAGGGCTG 59.106 40.000 31.05 21.15 40.35 4.85
119 120 5.221322 CCATCTAAAATTTTAGGAGGGCTGC 60.221 44.000 29.04 0.00 40.35 5.25
120 121 4.278310 TCTAAAATTTTAGGAGGGCTGCC 58.722 43.478 29.04 11.05 40.35 4.85
121 122 2.621556 AAATTTTAGGAGGGCTGCCA 57.378 45.000 22.05 0.00 0.00 4.92
122 123 2.854736 AATTTTAGGAGGGCTGCCAT 57.145 45.000 22.05 14.78 0.00 4.40
123 124 2.077687 ATTTTAGGAGGGCTGCCATG 57.922 50.000 22.05 0.00 0.00 3.66
124 125 0.998928 TTTTAGGAGGGCTGCCATGA 59.001 50.000 22.05 0.00 0.00 3.07
125 126 1.225373 TTTAGGAGGGCTGCCATGAT 58.775 50.000 22.05 6.57 0.00 2.45
126 127 2.116869 TTAGGAGGGCTGCCATGATA 57.883 50.000 22.05 5.50 0.00 2.15
127 128 2.349167 TAGGAGGGCTGCCATGATAT 57.651 50.000 22.05 3.35 0.00 1.63
128 129 0.990374 AGGAGGGCTGCCATGATATC 59.010 55.000 22.05 7.73 0.00 1.63
129 130 0.694771 GGAGGGCTGCCATGATATCA 59.305 55.000 22.05 8.10 0.00 2.15
130 131 1.284198 GGAGGGCTGCCATGATATCAT 59.716 52.381 22.05 12.62 36.96 2.45
131 132 2.291411 GGAGGGCTGCCATGATATCATT 60.291 50.000 22.05 0.00 33.61 2.57
132 133 3.428532 GAGGGCTGCCATGATATCATTT 58.571 45.455 22.05 0.00 33.61 2.32
133 134 3.830755 GAGGGCTGCCATGATATCATTTT 59.169 43.478 22.05 0.00 33.61 1.82
134 135 4.228824 AGGGCTGCCATGATATCATTTTT 58.771 39.130 22.05 0.00 33.61 1.94
156 157 7.994425 TTTTATTATGCTCCAAGTCTTGTGA 57.006 32.000 11.61 7.53 0.00 3.58
157 158 8.579850 TTTTATTATGCTCCAAGTCTTGTGAT 57.420 30.769 11.61 0.00 0.00 3.06
158 159 9.679661 TTTTATTATGCTCCAAGTCTTGTGATA 57.320 29.630 11.61 0.00 0.00 2.15
159 160 8.893219 TTATTATGCTCCAAGTCTTGTGATAG 57.107 34.615 11.61 4.86 0.00 2.08
160 161 6.544928 TTATGCTCCAAGTCTTGTGATAGA 57.455 37.500 11.61 0.70 0.00 1.98
161 162 4.890158 TGCTCCAAGTCTTGTGATAGAA 57.110 40.909 11.61 0.00 0.00 2.10
162 163 5.426689 TGCTCCAAGTCTTGTGATAGAAT 57.573 39.130 11.61 0.00 0.00 2.40
163 164 6.544928 TGCTCCAAGTCTTGTGATAGAATA 57.455 37.500 11.61 0.00 0.00 1.75
164 165 7.129457 TGCTCCAAGTCTTGTGATAGAATAT 57.871 36.000 11.61 0.00 0.00 1.28
165 166 7.212976 TGCTCCAAGTCTTGTGATAGAATATC 58.787 38.462 11.61 0.00 0.00 1.63
166 167 6.648725 GCTCCAAGTCTTGTGATAGAATATCC 59.351 42.308 11.61 0.00 0.00 2.59
167 168 7.067496 TCCAAGTCTTGTGATAGAATATCCC 57.933 40.000 11.61 0.00 0.00 3.85
168 169 6.043243 TCCAAGTCTTGTGATAGAATATCCCC 59.957 42.308 11.61 0.00 0.00 4.81
169 170 6.183361 CCAAGTCTTGTGATAGAATATCCCCA 60.183 42.308 11.61 0.00 0.00 4.96
170 171 7.456725 CAAGTCTTGTGATAGAATATCCCCAT 58.543 38.462 4.27 0.00 0.00 4.00
171 172 8.597167 CAAGTCTTGTGATAGAATATCCCCATA 58.403 37.037 4.27 0.00 0.00 2.74
172 173 8.742125 AGTCTTGTGATAGAATATCCCCATAA 57.258 34.615 0.00 0.00 0.00 1.90
173 174 9.170890 AGTCTTGTGATAGAATATCCCCATAAA 57.829 33.333 0.00 0.00 0.00 1.40
174 175 9.965902 GTCTTGTGATAGAATATCCCCATAAAT 57.034 33.333 0.00 0.00 0.00 1.40
176 177 9.401058 CTTGTGATAGAATATCCCCATAAATCC 57.599 37.037 0.00 0.00 0.00 3.01
177 178 8.461685 TGTGATAGAATATCCCCATAAATCCA 57.538 34.615 0.00 0.00 0.00 3.41
178 179 8.328758 TGTGATAGAATATCCCCATAAATCCAC 58.671 37.037 0.00 0.00 0.00 4.02
179 180 7.775561 GTGATAGAATATCCCCATAAATCCACC 59.224 40.741 0.00 0.00 0.00 4.61
180 181 7.688534 TGATAGAATATCCCCATAAATCCACCT 59.311 37.037 0.00 0.00 0.00 4.00
181 182 6.144845 AGAATATCCCCATAAATCCACCTG 57.855 41.667 0.00 0.00 0.00 4.00
182 183 4.953781 ATATCCCCATAAATCCACCTGG 57.046 45.455 0.00 0.00 0.00 4.45
183 184 0.555769 TCCCCATAAATCCACCTGGC 59.444 55.000 0.00 0.00 34.44 4.85
184 185 0.823356 CCCCATAAATCCACCTGGCG 60.823 60.000 0.00 0.00 34.44 5.69
185 186 0.182537 CCCATAAATCCACCTGGCGA 59.817 55.000 0.00 0.00 34.44 5.54
186 187 1.597742 CCATAAATCCACCTGGCGAG 58.402 55.000 0.00 0.00 34.44 5.03
187 188 1.597742 CATAAATCCACCTGGCGAGG 58.402 55.000 14.03 14.03 46.21 4.63
188 189 0.474184 ATAAATCCACCTGGCGAGGG 59.526 55.000 19.90 7.91 44.84 4.30
189 190 1.632018 TAAATCCACCTGGCGAGGGG 61.632 60.000 19.90 15.61 44.84 4.79
200 201 4.082523 CGAGGGGCACGATGTGGT 62.083 66.667 0.00 0.00 33.64 4.16
201 202 2.436646 GAGGGGCACGATGTGGTG 60.437 66.667 0.00 0.00 40.89 4.17
202 203 3.976701 GAGGGGCACGATGTGGTGG 62.977 68.421 0.00 0.00 38.36 4.61
206 207 2.793946 GCACGATGTGGTGGCATC 59.206 61.111 0.00 0.00 41.21 3.91
207 208 1.746615 GCACGATGTGGTGGCATCT 60.747 57.895 0.00 0.00 42.14 2.90
208 209 1.709147 GCACGATGTGGTGGCATCTC 61.709 60.000 0.00 0.00 42.14 2.75
209 210 1.091771 CACGATGTGGTGGCATCTCC 61.092 60.000 0.00 0.00 42.14 3.71
210 211 1.267574 ACGATGTGGTGGCATCTCCT 61.268 55.000 0.00 0.00 42.14 3.69
211 212 0.107508 CGATGTGGTGGCATCTCCTT 60.108 55.000 0.00 0.00 42.14 3.36
212 213 1.679944 CGATGTGGTGGCATCTCCTTT 60.680 52.381 0.00 0.00 42.14 3.11
213 214 2.419990 CGATGTGGTGGCATCTCCTTTA 60.420 50.000 0.00 0.00 42.14 1.85
214 215 3.745480 CGATGTGGTGGCATCTCCTTTAT 60.745 47.826 0.00 0.00 42.14 1.40
215 216 3.003394 TGTGGTGGCATCTCCTTTATG 57.997 47.619 0.00 0.00 35.26 1.90
216 217 2.575735 TGTGGTGGCATCTCCTTTATGA 59.424 45.455 0.00 0.00 35.26 2.15
217 218 2.945668 GTGGTGGCATCTCCTTTATGAC 59.054 50.000 0.00 0.00 35.26 3.06
218 219 2.846206 TGGTGGCATCTCCTTTATGACT 59.154 45.455 0.00 0.00 33.24 3.41
219 220 3.266772 TGGTGGCATCTCCTTTATGACTT 59.733 43.478 0.00 0.00 33.24 3.01
220 221 3.879892 GGTGGCATCTCCTTTATGACTTC 59.120 47.826 0.00 0.00 33.24 3.01
221 222 3.879892 GTGGCATCTCCTTTATGACTTCC 59.120 47.826 0.00 0.00 33.24 3.46
222 223 3.117888 TGGCATCTCCTTTATGACTTCCC 60.118 47.826 0.00 0.00 33.24 3.97
223 224 3.117888 GGCATCTCCTTTATGACTTCCCA 60.118 47.826 0.00 0.00 29.15 4.37
224 225 4.133078 GCATCTCCTTTATGACTTCCCAG 58.867 47.826 0.00 0.00 0.00 4.45
230 231 3.519510 CCTTTATGACTTCCCAGACCTCA 59.480 47.826 0.00 0.00 0.00 3.86
232 233 5.359194 TTTATGACTTCCCAGACCTCATC 57.641 43.478 0.00 0.00 0.00 2.92
241 242 1.475280 CCAGACCTCATCGTCGGTAAA 59.525 52.381 0.00 0.00 37.85 2.01
247 248 2.993899 CCTCATCGTCGGTAAATATGCC 59.006 50.000 0.00 0.00 0.00 4.40
260 261 5.050091 GGTAAATATGCCGTCAAGATCACAG 60.050 44.000 0.00 0.00 0.00 3.66
264 265 0.247736 GCCGTCAAGATCACAGAGGT 59.752 55.000 0.00 0.00 0.00 3.85
268 269 1.546476 GTCAAGATCACAGAGGTCGGT 59.454 52.381 0.00 0.00 0.00 4.69
274 275 1.372997 CACAGAGGTCGGTCCGTTG 60.373 63.158 11.88 6.12 41.99 4.10
278 279 2.047274 AGGTCGGTCCGTTGCATG 60.047 61.111 11.88 0.00 41.99 4.06
289 290 1.709147 CGTTGCATGCCTAGCTCCAC 61.709 60.000 16.68 0.00 0.00 4.02
303 304 1.280421 GCTCCACAAGATCAAGGGAGT 59.720 52.381 18.19 0.00 45.46 3.85
321 322 6.367983 AGGGAGTGCATTGTTGTATCATATT 58.632 36.000 0.00 0.00 0.00 1.28
325 326 7.975616 GGAGTGCATTGTTGTATCATATTGTTT 59.024 33.333 0.00 0.00 0.00 2.83
437 467 4.256813 GTCGAAGGACGTTCCCAC 57.743 61.111 2.43 0.00 43.13 4.61
443 473 2.685100 GAAGGACGTTCCCACTTACAG 58.315 52.381 0.00 0.00 37.19 2.74
469 499 0.100503 CGGGGATGAAATTTCCGCAC 59.899 55.000 15.48 8.22 44.24 5.34
480 510 0.871722 TTTCCGCACGACTTCCATTG 59.128 50.000 0.00 0.00 0.00 2.82
501 531 1.862411 GCGGCAGCGTTAAACAACTTT 60.862 47.619 0.00 0.00 0.00 2.66
545 575 2.697751 AGCCATCGCACTCTAGATCTTT 59.302 45.455 0.00 0.00 37.52 2.52
566 596 1.209128 CCTTGCAATAGTACGCTCCG 58.791 55.000 0.00 0.00 0.00 4.63
571 601 0.966920 CAATAGTACGCTCCGGGGAT 59.033 55.000 4.80 0.00 0.00 3.85
577 607 1.672854 TACGCTCCGGGGATGACAAG 61.673 60.000 4.80 0.00 0.00 3.16
645 1527 5.812642 ACTGTTTCTAATTCTGATACTGCCG 59.187 40.000 0.00 0.00 0.00 5.69
649 1531 5.392767 TCTAATTCTGATACTGCCGATCC 57.607 43.478 0.00 0.00 0.00 3.36
731 1613 1.757699 ACCTTCCCTAATCTCTCGTGC 59.242 52.381 0.00 0.00 0.00 5.34
741 1623 0.966179 TCTCTCGTGCCAAGTTAGCA 59.034 50.000 0.00 0.00 38.08 3.49
835 1718 4.758251 CGCGAGGCCACCACATGA 62.758 66.667 5.01 0.00 0.00 3.07
836 1719 3.127533 GCGAGGCCACCACATGAC 61.128 66.667 5.01 0.00 0.00 3.06
837 1720 2.347114 CGAGGCCACCACATGACA 59.653 61.111 5.01 0.00 0.00 3.58
838 1721 2.034879 CGAGGCCACCACATGACAC 61.035 63.158 5.01 0.00 0.00 3.67
839 1722 1.073025 GAGGCCACCACATGACACA 59.927 57.895 5.01 0.00 0.00 3.72
840 1723 1.228245 AGGCCACCACATGACACAC 60.228 57.895 5.01 0.00 0.00 3.82
845 1728 0.662619 CACCACATGACACACCACAC 59.337 55.000 0.00 0.00 0.00 3.82
924 1809 2.284699 CCAACCGTCCCCCTCTCT 60.285 66.667 0.00 0.00 0.00 3.10
925 1810 2.359967 CCAACCGTCCCCCTCTCTC 61.360 68.421 0.00 0.00 0.00 3.20
952 1837 0.529773 TCACAACAAACGCGCTCTCT 60.530 50.000 5.73 0.00 0.00 3.10
953 1838 0.111089 CACAACAAACGCGCTCTCTC 60.111 55.000 5.73 0.00 0.00 3.20
954 1839 1.222115 ACAACAAACGCGCTCTCTCC 61.222 55.000 5.73 0.00 0.00 3.71
955 1840 0.946221 CAACAAACGCGCTCTCTCCT 60.946 55.000 5.73 0.00 0.00 3.69
956 1841 0.667792 AACAAACGCGCTCTCTCCTC 60.668 55.000 5.73 0.00 0.00 3.71
975 1860 2.125512 CCCAGCTTCCGGAACTCG 60.126 66.667 14.35 5.02 38.88 4.18
1226 2132 1.564348 GGACACCACCATCCAAGGTAT 59.436 52.381 0.00 0.00 40.77 2.73
1227 2133 2.775384 GGACACCACCATCCAAGGTATA 59.225 50.000 0.00 0.00 40.77 1.47
1262 2168 1.233019 CCTGATCGGCATGTTGATCC 58.767 55.000 19.87 2.32 40.19 3.36
1265 2171 0.861837 GATCGGCATGTTGATCCGTC 59.138 55.000 14.72 6.74 43.35 4.79
1266 2172 0.465705 ATCGGCATGTTGATCCGTCT 59.534 50.000 8.30 0.00 43.35 4.18
1267 2173 0.249120 TCGGCATGTTGATCCGTCTT 59.751 50.000 8.30 0.00 43.35 3.01
1268 2174 0.652592 CGGCATGTTGATCCGTCTTC 59.347 55.000 0.00 0.00 38.47 2.87
1269 2175 1.740380 CGGCATGTTGATCCGTCTTCT 60.740 52.381 0.00 0.00 38.47 2.85
1270 2176 1.667724 GGCATGTTGATCCGTCTTCTG 59.332 52.381 0.00 0.00 0.00 3.02
1271 2177 2.350522 GCATGTTGATCCGTCTTCTGT 58.649 47.619 0.00 0.00 0.00 3.41
1273 2179 3.932710 GCATGTTGATCCGTCTTCTGTTA 59.067 43.478 0.00 0.00 0.00 2.41
1274 2180 4.201724 GCATGTTGATCCGTCTTCTGTTAC 60.202 45.833 0.00 0.00 0.00 2.50
1278 2190 4.123497 TGATCCGTCTTCTGTTACATGG 57.877 45.455 0.00 0.00 0.00 3.66
1287 2199 5.009631 TCTTCTGTTACATGGGATTTGGTG 58.990 41.667 0.00 0.00 0.00 4.17
1291 2203 2.495669 GTTACATGGGATTTGGTGGTGG 59.504 50.000 0.00 0.00 0.00 4.61
1292 2204 0.904394 ACATGGGATTTGGTGGTGGC 60.904 55.000 0.00 0.00 0.00 5.01
1295 2207 2.046285 GGGATTTGGTGGTGGCGAG 61.046 63.158 0.00 0.00 0.00 5.03
1414 2328 2.715624 GGAATCGGCCAATCGTGC 59.284 61.111 2.24 0.00 0.00 5.34
1488 2402 2.887568 GATGTGGACGCGAGGCTG 60.888 66.667 15.93 0.00 40.87 4.85
1567 2485 6.347690 GCGTATGCGTACATGTCTTCATGG 62.348 50.000 16.12 2.83 45.87 3.66
1610 2535 1.208614 GAGCTTGCGCCTGAGTTTG 59.791 57.895 4.18 0.00 36.60 2.93
1630 2555 0.459237 CTGGGAAGCTCGCTGTACAG 60.459 60.000 18.93 18.93 0.00 2.74
1631 2556 1.185618 TGGGAAGCTCGCTGTACAGT 61.186 55.000 23.44 2.78 0.00 3.55
1669 2623 4.766375 TGGGCTGCTCTTACAACTATTAC 58.234 43.478 0.00 0.00 0.00 1.89
1725 2687 7.535258 CACTTGTATCTAAATATGGAATTGCGC 59.465 37.037 0.00 0.00 0.00 6.09
1818 2782 7.015098 TGTGTTTGGTTGATGGAGATTTGTTAT 59.985 33.333 0.00 0.00 0.00 1.89
1877 2841 2.821366 GGCGCTGGACCATGTCAG 60.821 66.667 7.64 0.00 33.68 3.51
1880 2844 1.004560 CGCTGGACCATGTCAGTGT 60.005 57.895 0.00 0.00 33.68 3.55
1975 2945 2.821546 TGAGCAAATATCGGGTCTTCG 58.178 47.619 7.14 0.00 32.93 3.79
1981 2951 4.735578 GCAAATATCGGGTCTTCGTACAGA 60.736 45.833 0.00 0.00 0.00 3.41
2023 3165 4.141914 CGTAAGTGAATTAGAGAAGGGCCT 60.142 45.833 0.00 0.00 0.00 5.19
2024 3166 4.495690 AAGTGAATTAGAGAAGGGCCTC 57.504 45.455 6.46 0.00 0.00 4.70
2025 3167 3.730269 AGTGAATTAGAGAAGGGCCTCT 58.270 45.455 6.46 5.77 44.92 3.69
2026 3168 3.454082 AGTGAATTAGAGAAGGGCCTCTG 59.546 47.826 6.46 0.00 42.95 3.35
2027 3169 3.452627 GTGAATTAGAGAAGGGCCTCTGA 59.547 47.826 6.46 0.00 42.95 3.27
2028 3170 4.102367 GTGAATTAGAGAAGGGCCTCTGAT 59.898 45.833 6.46 0.00 42.95 2.90
2059 3201 3.327172 TGGTGCATTGGGTGATTGAATTT 59.673 39.130 0.00 0.00 0.00 1.82
2072 3214 7.118245 GGGTGATTGAATTTCATTTTCAGTTCC 59.882 37.037 0.00 3.11 34.76 3.62
2075 3217 9.835389 TGATTGAATTTCATTTTCAGTTCCTTT 57.165 25.926 0.00 0.00 34.76 3.11
2143 3839 8.200024 ACTAGCACTACATCCATGATATTCTT 57.800 34.615 0.00 0.00 0.00 2.52
2144 3840 9.314133 ACTAGCACTACATCCATGATATTCTTA 57.686 33.333 0.00 0.00 0.00 2.10
2145 3841 9.579768 CTAGCACTACATCCATGATATTCTTAC 57.420 37.037 0.00 0.00 0.00 2.34
2199 3979 6.209788 AGTTCTATACAACTATAGAGCTGCCC 59.790 42.308 6.78 0.00 45.16 5.36
2203 3983 1.701847 CAACTATAGAGCTGCCCCCAT 59.298 52.381 6.78 0.00 0.00 4.00
2241 4023 2.434884 AATCTGGCTGCGGTGTCG 60.435 61.111 0.00 0.00 39.81 4.35
2249 4031 1.289109 GCTGCGGTGTCGAAAGCTTA 61.289 55.000 0.00 0.00 41.37 3.09
2278 4062 8.821686 TGTTGGTGTATTCAAGGAATTATCAT 57.178 30.769 0.00 0.00 33.95 2.45
2279 4063 9.253832 TGTTGGTGTATTCAAGGAATTATCATT 57.746 29.630 0.00 0.00 33.95 2.57
2337 4121 3.366985 CGTAGTTCTGTGATGGTGCAGTA 60.367 47.826 0.00 0.00 34.57 2.74
2343 4127 3.324846 TCTGTGATGGTGCAGTAAGAGTT 59.675 43.478 0.00 0.00 34.57 3.01
2396 4181 5.526111 ACACAAAGCAACGTAAATACACTCT 59.474 36.000 0.00 0.00 0.00 3.24
2454 4239 9.950680 GTGCTACATTAATGTAAATGCTATGTT 57.049 29.630 26.06 5.97 42.20 2.71
2591 4407 6.558488 TTAAGGCCTTCCATAATTTGCAAT 57.442 33.333 24.49 0.00 33.74 3.56
2675 4491 7.746703 ACACTCCTAATTTGTAAGGAAAGAGT 58.253 34.615 0.00 0.00 41.33 3.24
2676 4492 7.661847 ACACTCCTAATTTGTAAGGAAAGAGTG 59.338 37.037 0.00 0.00 41.33 3.51
2677 4493 7.661847 CACTCCTAATTTGTAAGGAAAGAGTGT 59.338 37.037 0.00 0.00 41.33 3.55
2678 4494 8.218488 ACTCCTAATTTGTAAGGAAAGAGTGTT 58.782 33.333 0.00 0.00 41.33 3.32
2773 4589 1.476845 TTGCTGGAGTTGGAGGCGTA 61.477 55.000 0.00 0.00 0.00 4.42
2859 4691 3.005554 CCTTTGCTCATGAGTCACGAAT 58.994 45.455 23.38 0.00 0.00 3.34
2923 4757 2.375174 TGGTGATGAGTTGGCTAGGTTT 59.625 45.455 0.00 0.00 0.00 3.27
3104 4945 6.301108 CGAGCAAATTAGCTAAAACGTAACA 58.699 36.000 10.85 0.00 46.75 2.41
3304 5151 7.745620 AAAGTGGTTTTATCGATCTTCTGTT 57.254 32.000 0.00 0.00 0.00 3.16
3347 5194 4.843728 TGGGATTTCGCTGATCTACTTTT 58.156 39.130 0.00 0.00 0.00 2.27
3355 5202 2.093658 GCTGATCTACTTTTGGGGTCGA 60.094 50.000 0.00 0.00 0.00 4.20
3458 5305 7.421530 TGAATCCTCTAACTTTTCAAACTCG 57.578 36.000 0.00 0.00 0.00 4.18
3468 5315 6.202516 ACTTTTCAAACTCGACCAATTTGA 57.797 33.333 0.00 5.66 39.84 2.69
3474 5321 1.089920 CTCGACCAATTTGAGCTGGG 58.910 55.000 0.00 0.00 37.00 4.45
3487 5334 3.590714 TGAGCTGGGATAGGATCATTGA 58.409 45.455 0.00 0.00 0.00 2.57
3518 5365 1.696063 ACAGCATGAAAACAGTGCCT 58.304 45.000 0.00 0.00 39.69 4.75
3566 5418 8.157476 TGGAGTTAGCTTTCTGTTTATCTCTTT 58.843 33.333 0.00 0.00 0.00 2.52
3612 5465 7.894708 TCAGCATGAAACAATAAAGATTTGGA 58.105 30.769 0.00 0.00 45.97 3.53
3613 5466 8.030692 TCAGCATGAAACAATAAAGATTTGGAG 58.969 33.333 0.00 0.00 45.97 3.86
3614 5467 7.816031 CAGCATGAAACAATAAAGATTTGGAGT 59.184 33.333 0.00 0.00 39.69 3.85
3615 5468 9.023962 AGCATGAAACAATAAAGATTTGGAGTA 57.976 29.630 0.00 0.00 0.00 2.59
3616 5469 9.807649 GCATGAAACAATAAAGATTTGGAGTAT 57.192 29.630 0.00 0.00 0.00 2.12
3623 5476 9.479549 ACAATAAAGATTTGGAGTATGATTGGT 57.520 29.630 0.00 0.00 0.00 3.67
3627 5480 8.421249 AAAGATTTGGAGTATGATTGGTTTGA 57.579 30.769 0.00 0.00 0.00 2.69
3628 5481 8.599624 AAGATTTGGAGTATGATTGGTTTGAT 57.400 30.769 0.00 0.00 0.00 2.57
3629 5482 8.004087 AGATTTGGAGTATGATTGGTTTGATG 57.996 34.615 0.00 0.00 0.00 3.07
3630 5483 5.581126 TTGGAGTATGATTGGTTTGATGC 57.419 39.130 0.00 0.00 0.00 3.91
3631 5484 3.953612 TGGAGTATGATTGGTTTGATGCC 59.046 43.478 0.00 0.00 0.00 4.40
3632 5485 3.953612 GGAGTATGATTGGTTTGATGCCA 59.046 43.478 0.00 0.00 0.00 4.92
3650 5503 2.295885 CCAAAAATTGGCTTGCCAACA 58.704 42.857 26.71 8.79 45.17 3.33
3651 5504 2.885894 CCAAAAATTGGCTTGCCAACAT 59.114 40.909 26.71 16.83 45.17 2.71
3652 5505 3.318557 CCAAAAATTGGCTTGCCAACATT 59.681 39.130 26.71 20.95 45.17 2.71
3653 5506 4.202131 CCAAAAATTGGCTTGCCAACATTT 60.202 37.500 26.71 24.50 45.17 2.32
3654 5507 4.571372 AAAATTGGCTTGCCAACATTTG 57.429 36.364 26.71 0.00 32.21 2.32
3683 5536 4.311816 CCAAATATTGGCTAGTGCTTGG 57.688 45.455 0.00 0.00 45.17 3.61
3684 5537 3.701040 CCAAATATTGGCTAGTGCTTGGT 59.299 43.478 0.00 0.00 45.17 3.67
3685 5538 4.202050 CCAAATATTGGCTAGTGCTTGGTC 60.202 45.833 0.00 0.00 45.17 4.02
3686 5539 2.309528 TATTGGCTAGTGCTTGGTCG 57.690 50.000 0.00 0.00 39.59 4.79
3687 5540 0.392998 ATTGGCTAGTGCTTGGTCGG 60.393 55.000 0.00 0.00 39.59 4.79
3688 5541 1.764571 TTGGCTAGTGCTTGGTCGGT 61.765 55.000 0.00 0.00 39.59 4.69
3689 5542 1.003718 GGCTAGTGCTTGGTCGGTT 60.004 57.895 0.00 0.00 39.59 4.44
3690 5543 0.248289 GGCTAGTGCTTGGTCGGTTA 59.752 55.000 0.00 0.00 39.59 2.85
3691 5544 1.356938 GCTAGTGCTTGGTCGGTTAC 58.643 55.000 0.00 0.00 36.03 2.50
3692 5545 2.005560 GCTAGTGCTTGGTCGGTTACC 61.006 57.143 0.00 0.00 41.68 2.85
3704 5557 4.137849 GTCGGTTACCAACTTTACTTGC 57.862 45.455 1.13 0.00 0.00 4.01
3705 5558 3.058708 GTCGGTTACCAACTTTACTTGCC 60.059 47.826 1.13 0.00 0.00 4.52
3706 5559 2.879646 CGGTTACCAACTTTACTTGCCA 59.120 45.455 1.13 0.00 0.00 4.92
3707 5560 3.315749 CGGTTACCAACTTTACTTGCCAA 59.684 43.478 1.13 0.00 0.00 4.52
3708 5561 4.613944 GGTTACCAACTTTACTTGCCAAC 58.386 43.478 0.00 0.00 0.00 3.77
3709 5562 4.500205 GGTTACCAACTTTACTTGCCAACC 60.500 45.833 0.00 0.00 31.61 3.77
3710 5563 3.026707 ACCAACTTTACTTGCCAACCT 57.973 42.857 0.00 0.00 0.00 3.50
3711 5564 2.956333 ACCAACTTTACTTGCCAACCTC 59.044 45.455 0.00 0.00 0.00 3.85
3712 5565 2.955660 CCAACTTTACTTGCCAACCTCA 59.044 45.455 0.00 0.00 0.00 3.86
3713 5566 3.243401 CCAACTTTACTTGCCAACCTCAC 60.243 47.826 0.00 0.00 0.00 3.51
3714 5567 3.290948 ACTTTACTTGCCAACCTCACA 57.709 42.857 0.00 0.00 0.00 3.58
3715 5568 3.626930 ACTTTACTTGCCAACCTCACAA 58.373 40.909 0.00 0.00 0.00 3.33
3716 5569 3.632145 ACTTTACTTGCCAACCTCACAAG 59.368 43.478 0.00 0.00 44.98 3.16
3717 5570 3.569194 TTACTTGCCAACCTCACAAGA 57.431 42.857 8.82 0.00 42.71 3.02
3718 5571 2.435372 ACTTGCCAACCTCACAAGAA 57.565 45.000 8.82 0.00 42.71 2.52
3719 5572 2.301346 ACTTGCCAACCTCACAAGAAG 58.699 47.619 8.82 0.00 42.71 2.85
3720 5573 2.301346 CTTGCCAACCTCACAAGAAGT 58.699 47.619 0.00 0.00 42.71 3.01
3721 5574 2.435372 TGCCAACCTCACAAGAAGTT 57.565 45.000 0.00 0.00 0.00 2.66
3722 5575 2.023673 TGCCAACCTCACAAGAAGTTG 58.976 47.619 0.00 0.00 42.96 3.16
3723 5576 1.269257 GCCAACCTCACAAGAAGTTGC 60.269 52.381 2.29 0.00 42.31 4.17
3724 5577 1.338020 CCAACCTCACAAGAAGTTGCC 59.662 52.381 2.29 0.00 42.31 4.52
3725 5578 2.023673 CAACCTCACAAGAAGTTGCCA 58.976 47.619 0.00 0.00 38.82 4.92
3726 5579 1.680338 ACCTCACAAGAAGTTGCCAC 58.320 50.000 0.00 0.00 37.14 5.01
3727 5580 1.212935 ACCTCACAAGAAGTTGCCACT 59.787 47.619 0.00 0.00 37.14 4.00
3728 5581 2.301346 CCTCACAAGAAGTTGCCACTT 58.699 47.619 2.23 2.23 46.64 3.16
3729 5582 2.689983 CCTCACAAGAAGTTGCCACTTT 59.310 45.455 4.46 0.00 43.79 2.66
3730 5583 3.131046 CCTCACAAGAAGTTGCCACTTTT 59.869 43.478 4.46 0.00 43.79 2.27
3731 5584 4.381932 CCTCACAAGAAGTTGCCACTTTTT 60.382 41.667 4.46 2.61 43.79 1.94
3761 5614 3.702147 CCAATTGTTGGCTTGCCAA 57.298 47.368 21.59 21.59 45.17 4.52
3762 5615 1.515081 CCAATTGTTGGCTTGCCAAG 58.485 50.000 25.26 13.96 45.17 3.61
3763 5616 1.202675 CCAATTGTTGGCTTGCCAAGT 60.203 47.619 25.26 12.86 45.17 3.16
3764 5617 2.036992 CCAATTGTTGGCTTGCCAAGTA 59.963 45.455 25.26 16.72 45.17 2.24
3765 5618 3.306919 CCAATTGTTGGCTTGCCAAGTAT 60.307 43.478 25.26 18.02 45.17 2.12
3766 5619 4.317488 CAATTGTTGGCTTGCCAAGTATT 58.683 39.130 25.26 21.82 0.00 1.89
3767 5620 6.817515 CCAATTGTTGGCTTGCCAAGTATTG 61.818 44.000 30.21 30.21 45.00 1.90
3794 5647 3.123157 CCAAATGTTGGCATCAAACCA 57.877 42.857 1.83 0.00 45.17 3.67
3795 5648 3.474600 CCAAATGTTGGCATCAAACCAA 58.525 40.909 1.83 0.00 45.17 3.67
3801 5654 3.608316 TTGGCATCAAACCAATTAGCC 57.392 42.857 0.00 0.00 42.23 3.93
3802 5655 2.818921 TGGCATCAAACCAATTAGCCT 58.181 42.857 0.00 0.00 41.12 4.58
3803 5656 2.760092 TGGCATCAAACCAATTAGCCTC 59.240 45.455 0.00 0.00 41.12 4.70
3804 5657 3.026694 GGCATCAAACCAATTAGCCTCT 58.973 45.455 0.00 0.00 37.67 3.69
3805 5658 3.448660 GGCATCAAACCAATTAGCCTCTT 59.551 43.478 0.00 0.00 37.67 2.85
3806 5659 4.427312 GCATCAAACCAATTAGCCTCTTG 58.573 43.478 0.00 0.00 0.00 3.02
3807 5660 4.678840 GCATCAAACCAATTAGCCTCTTGG 60.679 45.833 7.11 7.11 46.03 3.61
3855 5709 6.446781 ACAAGCTATTTGATCTGGACATTG 57.553 37.500 0.00 0.00 39.21 2.82
3957 5811 5.921976 TGATGTGTTCTCAATTGTTCATTGC 59.078 36.000 5.13 0.00 42.06 3.56
4031 5885 4.902443 TCACTTGTTATAGAGAGCGAGG 57.098 45.455 0.00 0.00 0.00 4.63
4219 6073 5.163581 CCCAACCATGATGATCTTCAAGAAC 60.164 44.000 14.60 0.00 0.00 3.01
4384 6239 2.031420 TCGAAAACTCGACGTCATCTGT 60.031 45.455 17.16 5.20 37.20 3.41
4622 6480 8.044309 TGATCGTTTCCCTTATAAACTGATGAA 58.956 33.333 0.00 0.00 35.20 2.57
4623 6481 8.980481 ATCGTTTCCCTTATAAACTGATGAAT 57.020 30.769 0.00 0.00 35.20 2.57
4624 6482 8.433421 TCGTTTCCCTTATAAACTGATGAATC 57.567 34.615 0.00 0.00 35.20 2.52
4625 6483 8.265055 TCGTTTCCCTTATAAACTGATGAATCT 58.735 33.333 0.00 0.00 35.20 2.40
4626 6484 8.338259 CGTTTCCCTTATAAACTGATGAATCTG 58.662 37.037 0.00 0.00 35.20 2.90
4627 6485 9.178758 GTTTCCCTTATAAACTGATGAATCTGT 57.821 33.333 0.00 0.00 40.12 3.41
4668 6526 7.093354 TCTAGATCTTGATTGTGAACACTGTC 58.907 38.462 0.00 5.21 0.00 3.51
4710 6571 6.384015 TCTCTTATCTTTTAGATGGCTGTGGA 59.616 38.462 0.00 0.00 35.37 4.02
4711 6572 7.071698 TCTCTTATCTTTTAGATGGCTGTGGAT 59.928 37.037 0.00 0.00 35.37 3.41
4712 6573 6.994496 TCTTATCTTTTAGATGGCTGTGGATG 59.006 38.462 0.00 0.00 35.37 3.51
4713 6574 4.842531 TCTTTTAGATGGCTGTGGATGA 57.157 40.909 0.00 0.00 0.00 2.92
4714 6575 4.774124 TCTTTTAGATGGCTGTGGATGAG 58.226 43.478 0.00 0.00 0.00 2.90
4715 6576 4.471025 TCTTTTAGATGGCTGTGGATGAGA 59.529 41.667 0.00 0.00 0.00 3.27
4716 6577 4.842531 TTTAGATGGCTGTGGATGAGAA 57.157 40.909 0.00 0.00 0.00 2.87
4717 6578 5.378230 TTTAGATGGCTGTGGATGAGAAT 57.622 39.130 0.00 0.00 0.00 2.40
4724 6585 4.202295 TGGCTGTGGATGAGAATATGAGAC 60.202 45.833 0.00 0.00 0.00 3.36
4757 6618 5.221722 GCTGGTTGGATGGAATAGACTGATA 60.222 44.000 0.00 0.00 0.00 2.15
4775 6636 5.474876 ACTGATACCTCTTTGCTTTTTCAGG 59.525 40.000 0.00 0.00 33.97 3.86
4780 6641 0.319813 CTTTGCTTTTTCAGGGGGCG 60.320 55.000 0.00 0.00 0.00 6.13
4799 6660 4.214971 GGGCGATAGTCGTATTCAGAGTAA 59.785 45.833 1.11 0.00 46.06 2.24
4800 6661 5.383958 GGCGATAGTCGTATTCAGAGTAAG 58.616 45.833 1.11 0.00 42.81 2.34
4801 6662 4.847217 GCGATAGTCGTATTCAGAGTAAGC 59.153 45.833 1.11 0.00 42.81 3.09
4804 6665 7.623715 GCGATAGTCGTATTCAGAGTAAGCATA 60.624 40.741 1.11 0.00 42.81 3.14
4805 6666 8.391859 CGATAGTCGTATTCAGAGTAAGCATAT 58.608 37.037 0.00 0.00 34.72 1.78
4806 6667 9.497030 GATAGTCGTATTCAGAGTAAGCATATG 57.503 37.037 0.00 0.00 0.00 1.78
4807 6668 7.278461 AGTCGTATTCAGAGTAAGCATATGT 57.722 36.000 4.29 0.00 0.00 2.29
4808 6669 8.392372 AGTCGTATTCAGAGTAAGCATATGTA 57.608 34.615 4.29 0.00 0.00 2.29
4826 6687 7.795734 GCATATGTAACTGATCGATCAAAACAG 59.204 37.037 27.09 17.78 36.18 3.16
4852 6713 2.514803 ACCCTGTTTGGTAGTTGCATC 58.485 47.619 0.00 0.00 36.67 3.91
4853 6714 2.158534 ACCCTGTTTGGTAGTTGCATCA 60.159 45.455 0.00 0.00 36.67 3.07
4865 6726 6.209192 TGGTAGTTGCATCAAATTCAGAACAT 59.791 34.615 0.00 0.00 0.00 2.71
4867 6728 5.475719 AGTTGCATCAAATTCAGAACATGG 58.524 37.500 0.00 0.00 0.00 3.66
4894 6755 1.035772 GTACGTCTGATTCGATCGCG 58.964 55.000 11.09 8.87 39.35 5.87
4982 6843 2.113433 GCACATCAGCTGGCTGGAG 61.113 63.158 20.41 15.44 43.75 3.86
4984 6845 2.271173 CATCAGCTGGCTGGAGCA 59.729 61.111 20.41 3.73 43.75 4.26
5050 6911 2.815503 TCGACTTGAATCGTGACAGGTA 59.184 45.455 0.00 0.00 42.80 3.08
5060 6921 7.431249 TGAATCGTGACAGGTATAGTATTTCC 58.569 38.462 0.00 0.00 0.00 3.13
5061 6922 6.971726 ATCGTGACAGGTATAGTATTTCCA 57.028 37.500 6.77 0.00 0.00 3.53
5062 6923 6.778834 TCGTGACAGGTATAGTATTTCCAA 57.221 37.500 6.77 0.00 0.00 3.53
5065 6926 6.918569 CGTGACAGGTATAGTATTTCCAAGAG 59.081 42.308 6.77 0.00 0.00 2.85
5066 6927 6.702282 GTGACAGGTATAGTATTTCCAAGAGC 59.298 42.308 6.77 0.00 0.00 4.09
5067 6928 6.382859 TGACAGGTATAGTATTTCCAAGAGCA 59.617 38.462 6.77 0.00 0.00 4.26
5069 6930 7.220030 ACAGGTATAGTATTTCCAAGAGCATG 58.780 38.462 0.00 0.00 0.00 4.06
5070 6931 6.652481 CAGGTATAGTATTTCCAAGAGCATGG 59.348 42.308 0.00 0.00 42.12 3.66
5071 6932 5.412904 GGTATAGTATTTCCAAGAGCATGGC 59.587 44.000 0.00 0.00 40.46 4.40
5072 6933 3.370840 AGTATTTCCAAGAGCATGGCA 57.629 42.857 0.00 0.00 40.46 4.92
5073 6934 3.907221 AGTATTTCCAAGAGCATGGCAT 58.093 40.909 0.00 0.00 40.46 4.40
5110 7608 4.219288 AGCTCTTTAAATGCCTCCTTGTTG 59.781 41.667 8.97 0.00 0.00 3.33
5123 7621 1.408702 CCTTGTTGGGTTTGTGTCTGG 59.591 52.381 0.00 0.00 0.00 3.86
5126 7625 0.385390 GTTGGGTTTGTGTCTGGCAG 59.615 55.000 8.58 8.58 0.00 4.85
5184 7689 7.708998 TGATAACTTTTAACAAACAGTGACCC 58.291 34.615 0.00 0.00 0.00 4.46
5250 7779 2.432628 GCACGACACGAGGAAGGG 60.433 66.667 0.00 0.00 0.00 3.95
5260 7793 3.090532 AGGAAGGGGCCGATCCAC 61.091 66.667 23.43 0.00 39.08 4.02
5261 7794 4.547367 GGAAGGGGCCGATCCACG 62.547 72.222 18.44 0.00 45.34 4.94
5262 7795 3.782443 GAAGGGGCCGATCCACGT 61.782 66.667 0.00 0.00 45.34 4.49
5263 7796 3.735037 GAAGGGGCCGATCCACGTC 62.735 68.421 0.00 0.00 45.34 4.34
5376 7910 1.606885 CGTGGGGCATTCAATTGGCT 61.607 55.000 5.42 0.00 41.61 4.75
5460 8007 8.531622 TCAAAATACGGTTCGTCAATAACTAA 57.468 30.769 0.00 0.00 41.54 2.24
5491 8038 4.340950 CACCACATCCAGTAAACAAAACCT 59.659 41.667 0.00 0.00 0.00 3.50
5495 8042 3.564053 TCCAGTAAACAAAACCTCCGT 57.436 42.857 0.00 0.00 0.00 4.69
5500 8048 5.038683 CAGTAAACAAAACCTCCGTTTTCC 58.961 41.667 0.00 0.00 46.88 3.13
5583 8131 1.352017 AGACCACATGACATGCCTTGA 59.648 47.619 15.49 0.00 0.00 3.02
5677 8227 2.440253 CCTACCGGGTTCCCAATGATTA 59.560 50.000 4.31 0.00 0.00 1.75
5680 8230 2.310647 ACCGGGTTCCCAATGATTACTT 59.689 45.455 6.32 0.00 0.00 2.24
5688 8245 2.364632 CCAATGATTACTTGTGCGGGA 58.635 47.619 0.00 0.00 0.00 5.14
5766 8341 1.891919 GGACAGAGCACGCACCAAA 60.892 57.895 0.00 0.00 0.00 3.28
5780 8355 4.079748 CAAACGCCGTGCCCGTAC 62.080 66.667 0.00 0.00 38.06 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.016318 GGATGCGAATGTCATTGGTGA 58.984 47.619 1.88 0.00 0.00 4.02
15 16 1.268184 CGGATGCGAATGTCATTGGTG 60.268 52.381 0.00 0.00 0.00 4.17
16 17 1.016627 CGGATGCGAATGTCATTGGT 58.983 50.000 0.00 0.00 0.00 3.67
17 18 0.308684 CCGGATGCGAATGTCATTGG 59.691 55.000 8.71 2.71 0.00 3.16
18 19 0.317269 GCCGGATGCGAATGTCATTG 60.317 55.000 8.71 0.00 0.00 2.82
19 20 2.024918 GCCGGATGCGAATGTCATT 58.975 52.632 8.71 0.00 0.00 2.57
20 21 3.736483 GCCGGATGCGAATGTCAT 58.264 55.556 8.71 0.00 0.00 3.06
29 30 2.191128 ATTCCTATGAAGCCGGATGC 57.809 50.000 5.05 0.00 41.71 3.91
30 31 3.686726 GCTTATTCCTATGAAGCCGGATG 59.313 47.826 5.05 0.00 39.75 3.51
31 32 3.617531 CGCTTATTCCTATGAAGCCGGAT 60.618 47.826 5.05 0.00 42.09 4.18
32 33 2.288825 CGCTTATTCCTATGAAGCCGGA 60.289 50.000 5.05 0.00 42.09 5.14
33 34 2.069273 CGCTTATTCCTATGAAGCCGG 58.931 52.381 0.00 0.00 42.09 6.13
34 35 2.476619 CACGCTTATTCCTATGAAGCCG 59.523 50.000 0.00 0.00 42.09 5.52
35 36 3.728845 TCACGCTTATTCCTATGAAGCC 58.271 45.455 0.00 0.00 42.09 4.35
36 37 4.991056 TCATCACGCTTATTCCTATGAAGC 59.009 41.667 0.00 0.00 41.75 3.86
37 38 5.119898 GCTCATCACGCTTATTCCTATGAAG 59.880 44.000 0.00 0.00 33.05 3.02
38 39 4.991056 GCTCATCACGCTTATTCCTATGAA 59.009 41.667 0.00 0.00 34.33 2.57
39 40 4.560128 GCTCATCACGCTTATTCCTATGA 58.440 43.478 0.00 0.00 0.00 2.15
40 41 3.681897 GGCTCATCACGCTTATTCCTATG 59.318 47.826 0.00 0.00 0.00 2.23
41 42 3.307059 GGGCTCATCACGCTTATTCCTAT 60.307 47.826 0.00 0.00 0.00 2.57
42 43 2.037251 GGGCTCATCACGCTTATTCCTA 59.963 50.000 0.00 0.00 0.00 2.94
43 44 1.202698 GGGCTCATCACGCTTATTCCT 60.203 52.381 0.00 0.00 0.00 3.36
44 45 1.202698 AGGGCTCATCACGCTTATTCC 60.203 52.381 0.00 0.00 0.00 3.01
45 46 2.246719 AGGGCTCATCACGCTTATTC 57.753 50.000 0.00 0.00 0.00 1.75
46 47 2.717639 AAGGGCTCATCACGCTTATT 57.282 45.000 0.00 0.00 38.40 1.40
47 48 2.717639 AAAGGGCTCATCACGCTTAT 57.282 45.000 0.00 0.00 39.15 1.73
48 49 3.838244 ATAAAGGGCTCATCACGCTTA 57.162 42.857 0.00 0.00 39.15 3.09
49 50 2.717639 ATAAAGGGCTCATCACGCTT 57.282 45.000 0.00 0.00 41.53 4.68
50 51 2.717639 AATAAAGGGCTCATCACGCT 57.282 45.000 0.00 0.00 0.00 5.07
51 52 3.304057 GCTTAATAAAGGGCTCATCACGC 60.304 47.826 0.00 0.00 32.98 5.34
52 53 3.059597 CGCTTAATAAAGGGCTCATCACG 60.060 47.826 0.00 0.00 38.63 4.35
53 54 4.127171 TCGCTTAATAAAGGGCTCATCAC 58.873 43.478 0.00 0.00 43.49 3.06
54 55 4.415881 TCGCTTAATAAAGGGCTCATCA 57.584 40.909 0.00 0.00 43.49 3.07
55 56 4.378874 GCATCGCTTAATAAAGGGCTCATC 60.379 45.833 0.00 0.00 43.49 2.92
56 57 3.503748 GCATCGCTTAATAAAGGGCTCAT 59.496 43.478 0.00 0.00 43.49 2.90
57 58 2.878406 GCATCGCTTAATAAAGGGCTCA 59.122 45.455 0.00 0.00 43.49 4.26
58 59 2.096218 CGCATCGCTTAATAAAGGGCTC 60.096 50.000 0.00 0.00 43.49 4.70
59 60 1.873591 CGCATCGCTTAATAAAGGGCT 59.126 47.619 0.00 0.00 43.49 5.19
60 61 1.871039 TCGCATCGCTTAATAAAGGGC 59.129 47.619 0.00 0.00 43.49 5.19
61 62 4.378459 GGATTCGCATCGCTTAATAAAGGG 60.378 45.833 0.00 0.00 44.78 3.95
62 63 4.452455 AGGATTCGCATCGCTTAATAAAGG 59.548 41.667 0.00 0.00 32.98 3.11
63 64 5.406780 AGAGGATTCGCATCGCTTAATAAAG 59.593 40.000 0.00 0.00 35.68 1.85
64 65 5.177511 CAGAGGATTCGCATCGCTTAATAAA 59.822 40.000 0.00 0.00 31.26 1.40
65 66 4.686091 CAGAGGATTCGCATCGCTTAATAA 59.314 41.667 0.00 0.00 31.26 1.40
66 67 4.237724 CAGAGGATTCGCATCGCTTAATA 58.762 43.478 0.00 0.00 31.26 0.98
67 68 3.062763 CAGAGGATTCGCATCGCTTAAT 58.937 45.455 0.00 0.00 31.26 1.40
68 69 2.473816 CAGAGGATTCGCATCGCTTAA 58.526 47.619 0.00 0.00 31.26 1.85
69 70 1.869754 GCAGAGGATTCGCATCGCTTA 60.870 52.381 0.00 0.00 31.26 3.09
70 71 1.156645 GCAGAGGATTCGCATCGCTT 61.157 55.000 0.00 0.00 31.26 4.68
71 72 1.593750 GCAGAGGATTCGCATCGCT 60.594 57.895 0.00 0.00 31.26 4.93
72 73 2.602322 GGCAGAGGATTCGCATCGC 61.602 63.158 0.00 0.00 31.26 4.58
73 74 0.602106 ATGGCAGAGGATTCGCATCG 60.602 55.000 0.00 0.00 31.26 3.84
74 75 1.155042 GATGGCAGAGGATTCGCATC 58.845 55.000 0.00 0.00 0.00 3.91
75 76 0.471191 TGATGGCAGAGGATTCGCAT 59.529 50.000 0.00 0.00 0.00 4.73
76 77 0.462581 GTGATGGCAGAGGATTCGCA 60.463 55.000 0.00 0.00 0.00 5.10
77 78 1.162800 GGTGATGGCAGAGGATTCGC 61.163 60.000 0.00 0.00 0.00 4.70
78 79 0.178767 TGGTGATGGCAGAGGATTCG 59.821 55.000 0.00 0.00 0.00 3.34
79 80 2.106166 AGATGGTGATGGCAGAGGATTC 59.894 50.000 0.00 0.00 0.00 2.52
80 81 2.133520 AGATGGTGATGGCAGAGGATT 58.866 47.619 0.00 0.00 0.00 3.01
81 82 1.817087 AGATGGTGATGGCAGAGGAT 58.183 50.000 0.00 0.00 0.00 3.24
82 83 2.477104 TAGATGGTGATGGCAGAGGA 57.523 50.000 0.00 0.00 0.00 3.71
83 84 3.565764 TTTAGATGGTGATGGCAGAGG 57.434 47.619 0.00 0.00 0.00 3.69
84 85 6.461110 AAATTTTAGATGGTGATGGCAGAG 57.539 37.500 0.00 0.00 0.00 3.35
85 86 6.855763 AAAATTTTAGATGGTGATGGCAGA 57.144 33.333 0.37 0.00 0.00 4.26
86 87 7.068593 TCCTAAAATTTTAGATGGTGATGGCAG 59.931 37.037 30.86 14.47 42.05 4.85
87 88 6.894654 TCCTAAAATTTTAGATGGTGATGGCA 59.105 34.615 30.86 0.00 42.05 4.92
88 89 7.346751 TCCTAAAATTTTAGATGGTGATGGC 57.653 36.000 30.86 0.00 42.05 4.40
89 90 7.014615 CCCTCCTAAAATTTTAGATGGTGATGG 59.985 40.741 30.86 21.73 42.05 3.51
90 91 7.470563 GCCCTCCTAAAATTTTAGATGGTGATG 60.471 40.741 30.86 20.18 42.05 3.07
91 92 6.551227 GCCCTCCTAAAATTTTAGATGGTGAT 59.449 38.462 30.86 0.00 42.05 3.06
92 93 5.891551 GCCCTCCTAAAATTTTAGATGGTGA 59.108 40.000 30.86 20.32 42.05 4.02
93 94 5.893824 AGCCCTCCTAAAATTTTAGATGGTG 59.106 40.000 30.86 23.57 42.05 4.17
94 95 5.893824 CAGCCCTCCTAAAATTTTAGATGGT 59.106 40.000 30.86 20.05 42.05 3.55
95 96 5.221322 GCAGCCCTCCTAAAATTTTAGATGG 60.221 44.000 30.86 27.89 42.05 3.51
96 97 5.221322 GGCAGCCCTCCTAAAATTTTAGATG 60.221 44.000 30.86 22.86 42.05 2.90
97 98 4.895889 GGCAGCCCTCCTAAAATTTTAGAT 59.104 41.667 30.86 8.85 42.05 1.98
98 99 4.264172 TGGCAGCCCTCCTAAAATTTTAGA 60.264 41.667 30.86 18.98 42.05 2.10
99 100 4.023291 TGGCAGCCCTCCTAAAATTTTAG 58.977 43.478 25.01 25.01 39.80 1.85
100 101 4.054359 TGGCAGCCCTCCTAAAATTTTA 57.946 40.909 9.64 10.16 0.00 1.52
101 102 2.901291 TGGCAGCCCTCCTAAAATTTT 58.099 42.857 9.64 8.75 0.00 1.82
102 103 2.621556 TGGCAGCCCTCCTAAAATTT 57.378 45.000 9.64 0.00 0.00 1.82
103 104 2.024080 TCATGGCAGCCCTCCTAAAATT 60.024 45.455 9.64 0.00 0.00 1.82
104 105 1.570501 TCATGGCAGCCCTCCTAAAAT 59.429 47.619 9.64 0.00 0.00 1.82
105 106 0.998928 TCATGGCAGCCCTCCTAAAA 59.001 50.000 9.64 0.00 0.00 1.52
106 107 1.225373 ATCATGGCAGCCCTCCTAAA 58.775 50.000 9.64 0.00 0.00 1.85
107 108 2.116869 TATCATGGCAGCCCTCCTAA 57.883 50.000 9.64 0.00 0.00 2.69
108 109 2.191400 GATATCATGGCAGCCCTCCTA 58.809 52.381 9.64 0.00 0.00 2.94
109 110 0.990374 GATATCATGGCAGCCCTCCT 59.010 55.000 9.64 0.00 0.00 3.69
110 111 0.694771 TGATATCATGGCAGCCCTCC 59.305 55.000 9.64 0.00 0.00 4.30
111 112 2.803030 ATGATATCATGGCAGCCCTC 57.197 50.000 17.51 0.00 34.83 4.30
112 113 3.537795 AAATGATATCATGGCAGCCCT 57.462 42.857 18.85 0.00 36.56 5.19
113 114 4.612264 AAAAATGATATCATGGCAGCCC 57.388 40.909 18.85 0.00 36.56 5.19
131 132 8.402798 TCACAAGACTTGGAGCATAATAAAAA 57.597 30.769 19.16 0.00 34.12 1.94
132 133 7.994425 TCACAAGACTTGGAGCATAATAAAA 57.006 32.000 19.16 0.00 34.12 1.52
133 134 9.330063 CTATCACAAGACTTGGAGCATAATAAA 57.670 33.333 19.16 0.00 34.12 1.40
134 135 8.704668 TCTATCACAAGACTTGGAGCATAATAA 58.295 33.333 19.16 0.00 34.12 1.40
135 136 8.250143 TCTATCACAAGACTTGGAGCATAATA 57.750 34.615 19.16 5.03 34.12 0.98
136 137 7.129457 TCTATCACAAGACTTGGAGCATAAT 57.871 36.000 19.16 4.23 34.12 1.28
137 138 6.544928 TCTATCACAAGACTTGGAGCATAA 57.455 37.500 19.16 0.00 34.12 1.90
138 139 6.544928 TTCTATCACAAGACTTGGAGCATA 57.455 37.500 19.16 8.32 34.12 3.14
139 140 5.426689 TTCTATCACAAGACTTGGAGCAT 57.573 39.130 19.16 7.67 34.12 3.79
140 141 4.890158 TTCTATCACAAGACTTGGAGCA 57.110 40.909 19.16 0.64 34.12 4.26
141 142 6.648725 GGATATTCTATCACAAGACTTGGAGC 59.351 42.308 19.16 0.00 34.12 4.70
142 143 7.158021 GGGATATTCTATCACAAGACTTGGAG 58.842 42.308 19.16 11.18 34.12 3.86
143 144 6.043243 GGGGATATTCTATCACAAGACTTGGA 59.957 42.308 19.16 13.18 34.12 3.53
144 145 6.183361 TGGGGATATTCTATCACAAGACTTGG 60.183 42.308 19.16 8.47 34.12 3.61
145 146 6.830912 TGGGGATATTCTATCACAAGACTTG 58.169 40.000 13.77 13.77 0.00 3.16
146 147 7.639062 ATGGGGATATTCTATCACAAGACTT 57.361 36.000 0.00 0.00 0.00 3.01
147 148 8.742125 TTATGGGGATATTCTATCACAAGACT 57.258 34.615 0.00 0.00 0.00 3.24
148 149 9.965902 ATTTATGGGGATATTCTATCACAAGAC 57.034 33.333 0.00 0.00 0.00 3.01
150 151 9.401058 GGATTTATGGGGATATTCTATCACAAG 57.599 37.037 0.00 0.00 0.00 3.16
151 152 8.899765 TGGATTTATGGGGATATTCTATCACAA 58.100 33.333 0.00 0.00 0.00 3.33
152 153 8.328758 GTGGATTTATGGGGATATTCTATCACA 58.671 37.037 0.00 0.00 0.00 3.58
153 154 7.775561 GGTGGATTTATGGGGATATTCTATCAC 59.224 40.741 0.00 0.00 0.00 3.06
154 155 7.688534 AGGTGGATTTATGGGGATATTCTATCA 59.311 37.037 0.00 0.00 0.00 2.15
155 156 7.995488 CAGGTGGATTTATGGGGATATTCTATC 59.005 40.741 0.00 0.00 0.00 2.08
156 157 7.091811 CCAGGTGGATTTATGGGGATATTCTAT 60.092 40.741 0.00 0.00 37.39 1.98
157 158 6.217487 CCAGGTGGATTTATGGGGATATTCTA 59.783 42.308 0.00 0.00 37.39 2.10
158 159 5.015603 CCAGGTGGATTTATGGGGATATTCT 59.984 44.000 0.00 0.00 37.39 2.40
159 160 5.264395 CCAGGTGGATTTATGGGGATATTC 58.736 45.833 0.00 0.00 37.39 1.75
160 161 4.510930 GCCAGGTGGATTTATGGGGATATT 60.511 45.833 0.00 0.00 37.39 1.28
161 162 3.011708 GCCAGGTGGATTTATGGGGATAT 59.988 47.826 0.00 0.00 37.39 1.63
162 163 2.378547 GCCAGGTGGATTTATGGGGATA 59.621 50.000 0.00 0.00 37.39 2.59
163 164 1.147817 GCCAGGTGGATTTATGGGGAT 59.852 52.381 0.00 0.00 37.39 3.85
164 165 0.555769 GCCAGGTGGATTTATGGGGA 59.444 55.000 0.00 0.00 37.39 4.81
165 166 0.823356 CGCCAGGTGGATTTATGGGG 60.823 60.000 0.00 0.00 39.08 4.96
166 167 0.182537 TCGCCAGGTGGATTTATGGG 59.817 55.000 0.00 0.00 37.39 4.00
167 168 1.597742 CTCGCCAGGTGGATTTATGG 58.402 55.000 0.00 0.00 37.39 2.74
168 169 1.597742 CCTCGCCAGGTGGATTTATG 58.402 55.000 0.00 0.00 37.39 1.90
169 170 0.474184 CCCTCGCCAGGTGGATTTAT 59.526 55.000 0.00 0.00 38.30 1.40
170 171 1.632018 CCCCTCGCCAGGTGGATTTA 61.632 60.000 0.00 0.00 38.30 1.40
171 172 2.677228 CCCTCGCCAGGTGGATTT 59.323 61.111 0.00 0.00 38.30 2.17
172 173 3.411517 CCCCTCGCCAGGTGGATT 61.412 66.667 0.00 0.00 38.30 3.01
183 184 4.082523 ACCACATCGTGCCCCTCG 62.083 66.667 0.00 0.00 31.34 4.63
184 185 2.436646 CACCACATCGTGCCCCTC 60.437 66.667 0.00 0.00 31.34 4.30
185 186 4.033776 CCACCACATCGTGCCCCT 62.034 66.667 0.00 0.00 32.10 4.79
188 189 2.751436 ATGCCACCACATCGTGCC 60.751 61.111 0.00 0.00 32.10 5.01
189 190 2.793946 GATGCCACCACATCGTGC 59.206 61.111 0.00 0.00 37.32 5.34
193 194 2.134789 AAAGGAGATGCCACCACATC 57.865 50.000 0.00 0.00 45.62 3.06
194 195 3.202818 TCATAAAGGAGATGCCACCACAT 59.797 43.478 0.00 0.00 40.02 3.21
195 196 2.575735 TCATAAAGGAGATGCCACCACA 59.424 45.455 0.00 0.00 40.02 4.17
196 197 2.945668 GTCATAAAGGAGATGCCACCAC 59.054 50.000 0.00 0.00 40.02 4.16
197 198 2.846206 AGTCATAAAGGAGATGCCACCA 59.154 45.455 0.00 0.00 40.02 4.17
198 199 3.567478 AGTCATAAAGGAGATGCCACC 57.433 47.619 0.00 0.00 40.02 4.61
199 200 3.879892 GGAAGTCATAAAGGAGATGCCAC 59.120 47.826 0.00 0.00 40.02 5.01
200 201 3.117888 GGGAAGTCATAAAGGAGATGCCA 60.118 47.826 0.00 0.00 40.02 4.92
201 202 3.117888 TGGGAAGTCATAAAGGAGATGCC 60.118 47.826 0.00 0.00 0.00 4.40
202 203 4.133078 CTGGGAAGTCATAAAGGAGATGC 58.867 47.826 0.00 0.00 0.00 3.91
203 204 5.363939 GTCTGGGAAGTCATAAAGGAGATG 58.636 45.833 0.00 0.00 0.00 2.90
204 205 4.410555 GGTCTGGGAAGTCATAAAGGAGAT 59.589 45.833 0.00 0.00 0.00 2.75
205 206 3.775316 GGTCTGGGAAGTCATAAAGGAGA 59.225 47.826 0.00 0.00 0.00 3.71
206 207 3.777522 AGGTCTGGGAAGTCATAAAGGAG 59.222 47.826 0.00 0.00 0.00 3.69
207 208 3.775316 GAGGTCTGGGAAGTCATAAAGGA 59.225 47.826 0.00 0.00 0.00 3.36
208 209 3.519510 TGAGGTCTGGGAAGTCATAAAGG 59.480 47.826 0.00 0.00 0.00 3.11
209 210 4.826274 TGAGGTCTGGGAAGTCATAAAG 57.174 45.455 0.00 0.00 0.00 1.85
210 211 4.141937 CGATGAGGTCTGGGAAGTCATAAA 60.142 45.833 0.00 0.00 0.00 1.40
211 212 3.384789 CGATGAGGTCTGGGAAGTCATAA 59.615 47.826 0.00 0.00 0.00 1.90
212 213 2.959030 CGATGAGGTCTGGGAAGTCATA 59.041 50.000 0.00 0.00 0.00 2.15
213 214 1.759445 CGATGAGGTCTGGGAAGTCAT 59.241 52.381 0.00 0.00 0.00 3.06
214 215 1.186200 CGATGAGGTCTGGGAAGTCA 58.814 55.000 0.00 0.00 0.00 3.41
215 216 1.135333 GACGATGAGGTCTGGGAAGTC 59.865 57.143 0.00 0.00 34.09 3.01
216 217 1.187087 GACGATGAGGTCTGGGAAGT 58.813 55.000 0.00 0.00 34.09 3.01
217 218 0.101399 CGACGATGAGGTCTGGGAAG 59.899 60.000 0.00 0.00 34.75 3.46
218 219 1.320344 CCGACGATGAGGTCTGGGAA 61.320 60.000 0.00 0.00 34.75 3.97
219 220 1.753078 CCGACGATGAGGTCTGGGA 60.753 63.158 0.00 0.00 34.75 4.37
220 221 0.750546 TACCGACGATGAGGTCTGGG 60.751 60.000 0.00 0.00 41.63 4.45
221 222 1.100510 TTACCGACGATGAGGTCTGG 58.899 55.000 0.00 0.00 41.63 3.86
222 223 2.933495 TTTACCGACGATGAGGTCTG 57.067 50.000 0.00 0.00 41.63 3.51
223 224 4.558898 GCATATTTACCGACGATGAGGTCT 60.559 45.833 0.00 0.00 41.63 3.85
224 225 3.673809 GCATATTTACCGACGATGAGGTC 59.326 47.826 0.00 0.00 41.63 3.85
241 242 3.244009 CCTCTGTGATCTTGACGGCATAT 60.244 47.826 0.00 0.00 0.00 1.78
247 248 1.468224 CCGACCTCTGTGATCTTGACG 60.468 57.143 0.00 0.00 0.00 4.35
248 249 1.546476 ACCGACCTCTGTGATCTTGAC 59.454 52.381 0.00 0.00 0.00 3.18
260 261 2.100631 CATGCAACGGACCGACCTC 61.101 63.158 23.38 7.05 36.31 3.85
264 265 2.572095 CTAGGCATGCAACGGACCGA 62.572 60.000 23.38 0.00 0.00 4.69
268 269 1.153369 GAGCTAGGCATGCAACGGA 60.153 57.895 21.36 0.00 0.00 4.69
274 275 0.107508 TCTTGTGGAGCTAGGCATGC 60.108 55.000 9.90 9.90 0.00 4.06
278 279 2.559440 CTTGATCTTGTGGAGCTAGGC 58.441 52.381 0.00 0.00 31.52 3.93
289 290 3.087031 ACAATGCACTCCCTTGATCTTG 58.913 45.455 4.06 0.00 0.00 3.02
303 304 9.872721 ATTGAAACAATATGATACAACAATGCA 57.127 25.926 0.00 0.00 0.00 3.96
390 391 2.112898 GACCATCTTGGGCTGCATG 58.887 57.895 0.50 0.00 44.12 4.06
391 392 4.672251 GACCATCTTGGGCTGCAT 57.328 55.556 0.50 0.00 44.12 3.96
399 400 2.353889 CGATGCCTTTCAGACCATCTTG 59.646 50.000 0.00 0.00 33.64 3.02
437 467 0.389391 ATCCCCGCGATCACTGTAAG 59.611 55.000 8.23 0.00 42.29 2.34
443 473 1.308998 AATTTCATCCCCGCGATCAC 58.691 50.000 8.23 0.00 0.00 3.06
450 480 0.100503 GTGCGGAAATTTCATCCCCG 59.899 55.000 19.49 14.52 42.74 5.73
469 499 2.745884 TGCCGCCAATGGAAGTCG 60.746 61.111 2.05 0.00 0.00 4.18
480 510 1.728074 GTTGTTTAACGCTGCCGCC 60.728 57.895 0.00 0.00 38.22 6.13
501 531 3.636231 CGGGAGAGGCCAACACCA 61.636 66.667 5.01 0.00 38.95 4.17
545 575 1.651987 GAGCGTACTATTGCAAGGCA 58.348 50.000 4.94 0.00 36.47 4.75
566 596 2.124695 GTCGGGCTTGTCATCCCC 60.125 66.667 5.38 2.46 39.39 4.81
571 601 3.542676 ACGGTGTCGGGCTTGTCA 61.543 61.111 0.00 0.00 41.39 3.58
577 607 2.280592 AAACTCACGGTGTCGGGC 60.281 61.111 8.17 0.00 40.12 6.13
581 611 0.106149 ACCCTCAAACTCACGGTGTC 59.894 55.000 8.17 0.00 0.00 3.67
731 1613 0.313672 TGGCGCTTTTGCTAACTTGG 59.686 50.000 7.64 0.00 44.80 3.61
833 1716 2.279186 CTCGCGTGTGGTGTGTCA 60.279 61.111 5.77 0.00 0.00 3.58
835 1718 4.522689 TGCTCGCGTGTGGTGTGT 62.523 61.111 5.77 0.00 0.00 3.72
836 1719 3.705638 CTGCTCGCGTGTGGTGTG 61.706 66.667 5.77 0.00 0.00 3.82
839 1722 4.908687 TTGCTGCTCGCGTGTGGT 62.909 61.111 5.77 0.00 43.27 4.16
840 1723 2.660553 TTTTTGCTGCTCGCGTGTGG 62.661 55.000 5.77 2.01 43.27 4.17
845 1728 2.359791 GCTGTTTTTGCTGCTCGCG 61.360 57.895 0.00 0.00 43.27 5.87
924 1809 0.234625 GTTTGTTGTGATGCGAGCGA 59.765 50.000 0.00 0.00 0.00 4.93
925 1810 1.054348 CGTTTGTTGTGATGCGAGCG 61.054 55.000 0.00 0.00 0.00 5.03
954 1839 4.082523 TTCCGGAAGCTGGGCGAG 62.083 66.667 14.35 0.00 0.00 5.03
955 1840 4.388499 GTTCCGGAAGCTGGGCGA 62.388 66.667 19.50 0.00 0.00 5.54
956 1841 4.394712 AGTTCCGGAAGCTGGGCG 62.395 66.667 19.50 0.00 0.00 6.13
1253 2159 5.147330 TGTAACAGAAGACGGATCAACAT 57.853 39.130 0.00 0.00 0.00 2.71
1260 2166 2.531771 TCCCATGTAACAGAAGACGGA 58.468 47.619 0.00 0.00 0.00 4.69
1261 2167 3.543680 ATCCCATGTAACAGAAGACGG 57.456 47.619 0.00 0.00 0.00 4.79
1262 2168 4.094887 CCAAATCCCATGTAACAGAAGACG 59.905 45.833 0.00 0.00 0.00 4.18
1265 2171 4.158394 CCACCAAATCCCATGTAACAGAAG 59.842 45.833 0.00 0.00 0.00 2.85
1266 2172 4.085733 CCACCAAATCCCATGTAACAGAA 58.914 43.478 0.00 0.00 0.00 3.02
1267 2173 3.075283 ACCACCAAATCCCATGTAACAGA 59.925 43.478 0.00 0.00 0.00 3.41
1268 2174 3.193267 CACCACCAAATCCCATGTAACAG 59.807 47.826 0.00 0.00 0.00 3.16
1269 2175 3.161067 CACCACCAAATCCCATGTAACA 58.839 45.455 0.00 0.00 0.00 2.41
1270 2176 2.495669 CCACCACCAAATCCCATGTAAC 59.504 50.000 0.00 0.00 0.00 2.50
1271 2177 2.813907 CCACCACCAAATCCCATGTAA 58.186 47.619 0.00 0.00 0.00 2.41
1273 2179 0.904394 GCCACCACCAAATCCCATGT 60.904 55.000 0.00 0.00 0.00 3.21
1274 2180 1.899617 GCCACCACCAAATCCCATG 59.100 57.895 0.00 0.00 0.00 3.66
1278 2190 0.394352 ATCTCGCCACCACCAAATCC 60.394 55.000 0.00 0.00 0.00 3.01
1287 2199 0.039074 CGGATCAGTATCTCGCCACC 60.039 60.000 0.00 0.00 32.29 4.61
1291 2203 4.266502 GCATTAATCGGATCAGTATCTCGC 59.733 45.833 0.00 0.00 32.29 5.03
1292 2204 4.497251 CGCATTAATCGGATCAGTATCTCG 59.503 45.833 0.00 0.00 32.29 4.04
1295 2207 5.287274 CAGACGCATTAATCGGATCAGTATC 59.713 44.000 10.58 0.00 0.00 2.24
1414 2328 2.742372 CGTGGAAGCGACCCAAGG 60.742 66.667 0.00 0.00 35.12 3.61
1448 2362 3.679917 GCTGCTATGCTCCTAACAACTGA 60.680 47.826 0.00 0.00 0.00 3.41
1449 2363 2.611292 GCTGCTATGCTCCTAACAACTG 59.389 50.000 0.00 0.00 0.00 3.16
1488 2402 3.119743 GCTACAAACGGGGTAAAATCCAC 60.120 47.826 0.00 0.00 0.00 4.02
1567 2485 4.142447 ACAAATCAAGACAGCAGATGCATC 60.142 41.667 19.37 19.37 45.16 3.91
1669 2623 9.494479 GTCATAAAATCATATGTGTGACAACAG 57.506 33.333 12.91 0.00 36.84 3.16
1683 2637 4.016444 ACAAGTGCCCGTCATAAAATCAT 58.984 39.130 0.00 0.00 0.00 2.45
1725 2687 8.440059 TCTACAATAACTCGCATTAAACAGTTG 58.560 33.333 0.00 0.00 31.52 3.16
1768 2732 9.174166 ACACAGGTATCAATAAGTTGAATAACC 57.826 33.333 10.34 10.34 46.67 2.85
1818 2782 2.092646 AGTGGTGTTTCAGGCACAGTAA 60.093 45.455 0.00 0.00 38.51 2.24
1880 2844 2.630889 ACATTCAGTCCTCTCAGGGA 57.369 50.000 0.00 0.00 35.59 4.20
2189 3969 1.911357 CATATCATGGGGGCAGCTCTA 59.089 52.381 0.00 0.00 0.00 2.43
2249 4031 4.098914 TCCTTGAATACACCAACAGCTT 57.901 40.909 0.00 0.00 0.00 3.74
2278 4062 6.072119 ACGAGATGTCTATATCCATAACGCAA 60.072 38.462 0.00 0.00 0.00 4.85
2279 4063 5.414765 ACGAGATGTCTATATCCATAACGCA 59.585 40.000 0.00 0.00 0.00 5.24
2362 4146 6.795098 ACGTTGCTTTGTGTAAGATATCAA 57.205 33.333 5.32 0.00 35.80 2.57
2529 4327 7.897575 TTGACATTTTTATGCCGCTATTTTT 57.102 28.000 0.00 0.00 0.00 1.94
2578 4391 5.118286 GTCCCCTTTCATTGCAAATTATGG 58.882 41.667 1.71 3.69 0.00 2.74
2591 4407 3.611025 AATTTGGAGTGTCCCCTTTCA 57.389 42.857 0.00 0.00 35.03 2.69
2773 4589 4.796231 CAAGTAGCGGCGTCGGCT 62.796 66.667 13.05 11.74 44.35 5.52
2895 4727 2.827921 GCCAACTCATCACCAATTTCCT 59.172 45.455 0.00 0.00 0.00 3.36
2923 4757 0.317436 GATGCAAACGCAACGAACCA 60.317 50.000 0.00 0.00 44.09 3.67
2940 4779 5.815581 ACTCACACTCACTCTCTCTTAGAT 58.184 41.667 0.00 0.00 32.41 1.98
2993 4832 1.066143 GTATGTACCACACAGCAGCCT 60.066 52.381 0.00 0.00 41.51 4.58
3038 4879 1.927174 AGCACGCTATTTTGACGCTAG 59.073 47.619 0.00 0.00 0.00 3.42
3104 4945 0.477202 AGCATATCTGGGAGGGCCAT 60.477 55.000 6.18 0.00 35.15 4.40
3164 5005 7.934120 CGGGTATATTTCTTTCAGAAGGAAGAT 59.066 37.037 7.69 8.23 36.51 2.40
3165 5006 7.093024 ACGGGTATATTTCTTTCAGAAGGAAGA 60.093 37.037 7.69 1.90 33.92 2.87
3166 5007 7.048512 ACGGGTATATTTCTTTCAGAAGGAAG 58.951 38.462 7.69 0.00 33.92 3.46
3188 5029 7.515957 AACTTGTCGTTATTAACATAGACGG 57.484 36.000 7.31 6.08 33.05 4.79
3214 5055 6.012337 TGTCAGATATTGATTTAGGCCCAA 57.988 37.500 0.00 0.00 38.29 4.12
3318 5165 1.281867 TCAGCGAAATCCCAACCAGAT 59.718 47.619 0.00 0.00 0.00 2.90
3347 5194 4.988716 AGCGTCAGGTCGACCCCA 62.989 66.667 30.82 15.10 42.07 4.96
3355 5202 3.402628 AATCACTGTAAAGCGTCAGGT 57.597 42.857 0.00 0.00 36.17 4.00
3417 5264 8.912988 AGAGGATTCAAACACAAATTAAAGTCA 58.087 29.630 0.00 0.00 0.00 3.41
3458 5305 3.117888 TCCTATCCCAGCTCAAATTGGTC 60.118 47.826 0.00 0.00 32.40 4.02
3468 5315 3.718434 TGTTCAATGATCCTATCCCAGCT 59.282 43.478 0.00 0.00 0.00 4.24
3474 5321 5.221601 TGCCTCTCTGTTCAATGATCCTATC 60.222 44.000 0.00 0.00 0.00 2.08
3487 5334 1.072806 TCATGCTGTTGCCTCTCTGTT 59.927 47.619 0.00 0.00 38.71 3.16
3518 5365 5.411361 CCAGCTATTAACAAGCAACACTACA 59.589 40.000 12.75 0.00 42.62 2.74
3566 5418 6.809689 GCTGATGAACATTGAATGATGAAACA 59.190 34.615 12.80 4.31 0.00 2.83
3612 5465 5.999205 TTTGGCATCAAACCAATCATACT 57.001 34.783 0.00 0.00 46.25 2.12
3613 5466 7.614124 ATTTTTGGCATCAAACCAATCATAC 57.386 32.000 0.00 0.00 46.25 2.39
3614 5467 7.120873 CCAATTTTTGGCATCAAACCAATCATA 59.879 33.333 0.00 0.00 46.25 2.15
3615 5468 6.071840 CCAATTTTTGGCATCAAACCAATCAT 60.072 34.615 0.00 0.00 46.25 2.45
3616 5469 5.241064 CCAATTTTTGGCATCAAACCAATCA 59.759 36.000 0.00 0.00 46.25 2.57
3617 5470 5.701855 CCAATTTTTGGCATCAAACCAATC 58.298 37.500 0.00 0.00 46.25 2.67
3618 5471 5.708877 CCAATTTTTGGCATCAAACCAAT 57.291 34.783 0.00 0.00 46.25 3.16
3663 5516 4.496341 CGACCAAGCACTAGCCAATATTTG 60.496 45.833 0.00 0.00 43.56 2.32
3664 5517 3.627577 CGACCAAGCACTAGCCAATATTT 59.372 43.478 0.00 0.00 43.56 1.40
3665 5518 3.206150 CGACCAAGCACTAGCCAATATT 58.794 45.455 0.00 0.00 43.56 1.28
3666 5519 2.485479 CCGACCAAGCACTAGCCAATAT 60.485 50.000 0.00 0.00 43.56 1.28
3667 5520 1.134521 CCGACCAAGCACTAGCCAATA 60.135 52.381 0.00 0.00 43.56 1.90
3668 5521 0.392998 CCGACCAAGCACTAGCCAAT 60.393 55.000 0.00 0.00 43.56 3.16
3669 5522 1.003839 CCGACCAAGCACTAGCCAA 60.004 57.895 0.00 0.00 43.56 4.52
3670 5523 1.764571 AACCGACCAAGCACTAGCCA 61.765 55.000 0.00 0.00 43.56 4.75
3671 5524 0.248289 TAACCGACCAAGCACTAGCC 59.752 55.000 0.00 0.00 43.56 3.93
3672 5525 1.356938 GTAACCGACCAAGCACTAGC 58.643 55.000 0.00 0.00 42.56 3.42
3683 5536 3.058708 GGCAAGTAAAGTTGGTAACCGAC 60.059 47.826 0.00 0.00 38.16 4.79
3684 5537 3.140623 GGCAAGTAAAGTTGGTAACCGA 58.859 45.455 0.03 0.00 0.00 4.69
3685 5538 2.879646 TGGCAAGTAAAGTTGGTAACCG 59.120 45.455 0.03 0.00 0.00 4.44
3686 5539 4.500205 GGTTGGCAAGTAAAGTTGGTAACC 60.500 45.833 0.00 0.00 0.00 2.85
3687 5540 4.340097 AGGTTGGCAAGTAAAGTTGGTAAC 59.660 41.667 0.00 0.00 0.00 2.50
3688 5541 4.538738 AGGTTGGCAAGTAAAGTTGGTAA 58.461 39.130 0.00 0.00 0.00 2.85
3689 5542 4.139038 GAGGTTGGCAAGTAAAGTTGGTA 58.861 43.478 0.00 0.00 0.00 3.25
3690 5543 2.956333 GAGGTTGGCAAGTAAAGTTGGT 59.044 45.455 0.00 0.00 0.00 3.67
3691 5544 2.955660 TGAGGTTGGCAAGTAAAGTTGG 59.044 45.455 0.00 0.00 0.00 3.77
3692 5545 3.380004 TGTGAGGTTGGCAAGTAAAGTTG 59.620 43.478 0.00 0.00 0.00 3.16
3693 5546 3.626930 TGTGAGGTTGGCAAGTAAAGTT 58.373 40.909 0.00 0.00 0.00 2.66
3694 5547 3.290948 TGTGAGGTTGGCAAGTAAAGT 57.709 42.857 0.00 0.00 0.00 2.66
3695 5548 3.882888 TCTTGTGAGGTTGGCAAGTAAAG 59.117 43.478 0.00 0.00 40.14 1.85
3696 5549 3.892284 TCTTGTGAGGTTGGCAAGTAAA 58.108 40.909 0.00 0.00 40.14 2.01
3697 5550 3.569194 TCTTGTGAGGTTGGCAAGTAA 57.431 42.857 0.00 0.00 40.14 2.24
3698 5551 3.118038 ACTTCTTGTGAGGTTGGCAAGTA 60.118 43.478 0.00 0.00 40.14 2.24
3699 5552 2.301346 CTTCTTGTGAGGTTGGCAAGT 58.699 47.619 0.00 0.00 40.14 3.16
3700 5553 2.301346 ACTTCTTGTGAGGTTGGCAAG 58.699 47.619 0.00 0.00 40.47 4.01
3701 5554 2.435372 ACTTCTTGTGAGGTTGGCAA 57.565 45.000 0.00 0.00 0.00 4.52
3702 5555 2.435372 AACTTCTTGTGAGGTTGGCA 57.565 45.000 0.00 0.00 40.33 4.92
3706 5559 2.024414 GTGGCAACTTCTTGTGAGGTT 58.976 47.619 0.00 0.00 42.16 3.50
3707 5560 1.212935 AGTGGCAACTTCTTGTGAGGT 59.787 47.619 0.00 0.00 33.75 3.85
3708 5561 1.972872 AGTGGCAACTTCTTGTGAGG 58.027 50.000 0.00 0.00 30.14 3.86
3709 5562 4.376340 AAAAGTGGCAACTTCTTGTGAG 57.624 40.909 7.02 0.00 46.15 3.51
3710 5563 4.493547 CAAAAAGTGGCAACTTCTTGTGA 58.506 39.130 11.32 0.00 46.15 3.58
3711 5564 3.618150 CCAAAAAGTGGCAACTTCTTGTG 59.382 43.478 16.97 4.38 46.15 3.33
3712 5565 3.860641 CCAAAAAGTGGCAACTTCTTGT 58.139 40.909 16.97 0.00 46.15 3.16
3751 5604 2.284754 TGTCAATACTTGGCAAGCCA 57.715 45.000 26.45 15.26 43.24 4.75
3756 5609 2.523245 TGGCATTGTCAATACTTGGCA 58.477 42.857 8.59 8.59 44.76 4.92
3757 5610 3.591196 TTGGCATTGTCAATACTTGGC 57.409 42.857 0.00 0.69 36.34 4.52
3758 5611 5.481105 ACATTTGGCATTGTCAATACTTGG 58.519 37.500 4.24 0.00 0.00 3.61
3759 5612 6.128499 CCAACATTTGGCATTGTCAATACTTG 60.128 38.462 4.24 6.35 45.17 3.16
3760 5613 5.933463 CCAACATTTGGCATTGTCAATACTT 59.067 36.000 4.24 0.00 45.17 2.24
3761 5614 5.481105 CCAACATTTGGCATTGTCAATACT 58.519 37.500 4.24 0.00 45.17 2.12
3762 5615 5.783100 CCAACATTTGGCATTGTCAATAC 57.217 39.130 4.24 0.00 45.17 1.89
3782 5635 2.760092 GAGGCTAATTGGTTTGATGCCA 59.240 45.455 0.00 0.00 41.12 4.92
3783 5636 3.026694 AGAGGCTAATTGGTTTGATGCC 58.973 45.455 0.00 0.00 39.19 4.40
3784 5637 4.427312 CAAGAGGCTAATTGGTTTGATGC 58.573 43.478 4.42 0.00 0.00 3.91
3785 5638 5.002464 CCAAGAGGCTAATTGGTTTGATG 57.998 43.478 18.47 0.00 40.93 3.07
3793 5646 2.562298 TGGCAAACCAAGAGGCTAATTG 59.438 45.455 5.22 5.22 45.37 2.32
3794 5647 2.888212 TGGCAAACCAAGAGGCTAATT 58.112 42.857 0.00 0.00 45.37 1.40
3795 5648 2.603075 TGGCAAACCAAGAGGCTAAT 57.397 45.000 0.00 0.00 45.37 1.73
3855 5709 7.054124 TCACAAGTTCTATGATCCCCAAATAC 58.946 38.462 0.00 0.00 0.00 1.89
3930 5784 8.528917 AATGAACAATTGAGAACACATCAATG 57.471 30.769 13.59 0.90 44.57 2.82
3957 5811 7.129109 ACTACAAAACAAATGGACAGTATCG 57.871 36.000 0.00 0.00 0.00 2.92
4031 5885 5.507985 CCCAGAATTCAACAAGAACAGGAAC 60.508 44.000 8.44 0.00 39.49 3.62
4231 6085 1.729470 CTGCTCCTATCACCGCGTCT 61.729 60.000 4.92 0.00 0.00 4.18
4303 6157 3.706373 GAGGAGGCCCGTTCAGCA 61.706 66.667 0.00 0.00 37.58 4.41
4384 6239 3.517602 ACGCACGTATAGAAAGATTGCA 58.482 40.909 0.00 0.00 0.00 4.08
4622 6480 9.634021 TCTAGAAACAGTATCACAGATACAGAT 57.366 33.333 16.79 3.89 0.00 2.90
4623 6481 9.634021 ATCTAGAAACAGTATCACAGATACAGA 57.366 33.333 16.79 10.25 0.00 3.41
4624 6482 9.891828 GATCTAGAAACAGTATCACAGATACAG 57.108 37.037 16.79 12.24 0.00 2.74
4625 6483 9.634021 AGATCTAGAAACAGTATCACAGATACA 57.366 33.333 16.79 0.00 0.00 2.29
4690 6551 6.327365 TCTCATCCACAGCCATCTAAAAGATA 59.673 38.462 0.00 0.00 32.12 1.98
4710 6571 4.244066 GCATCTGCGTCTCATATTCTCAT 58.756 43.478 0.00 0.00 0.00 2.90
4711 6572 3.646946 GCATCTGCGTCTCATATTCTCA 58.353 45.455 0.00 0.00 0.00 3.27
4757 6618 2.319844 CCCCTGAAAAAGCAAAGAGGT 58.680 47.619 0.00 0.00 0.00 3.85
4775 6636 1.884579 TCTGAATACGACTATCGCCCC 59.115 52.381 0.00 0.00 45.12 5.80
4780 6641 9.497030 CATATGCTTACTCTGAATACGACTATC 57.503 37.037 0.00 0.00 0.00 2.08
4799 6660 7.495606 TGTTTTGATCGATCAGTTACATATGCT 59.504 33.333 25.95 0.00 38.19 3.79
4800 6661 7.630026 TGTTTTGATCGATCAGTTACATATGC 58.370 34.615 25.95 10.34 38.19 3.14
4801 6662 9.034544 TCTGTTTTGATCGATCAGTTACATATG 57.965 33.333 25.95 17.74 38.19 1.78
4804 6665 6.873605 TGTCTGTTTTGATCGATCAGTTACAT 59.126 34.615 25.95 0.00 38.19 2.29
4805 6666 6.220201 TGTCTGTTTTGATCGATCAGTTACA 58.780 36.000 25.95 25.32 38.19 2.41
4806 6667 6.586463 TCTGTCTGTTTTGATCGATCAGTTAC 59.414 38.462 25.95 22.79 38.19 2.50
4807 6668 6.687604 TCTGTCTGTTTTGATCGATCAGTTA 58.312 36.000 25.95 10.99 38.19 2.24
4808 6669 5.541845 TCTGTCTGTTTTGATCGATCAGTT 58.458 37.500 25.95 0.00 38.19 3.16
4852 6713 6.267817 ACATATTCGCCATGTTCTGAATTTG 58.732 36.000 0.00 11.55 36.49 2.32
4853 6714 6.455360 ACATATTCGCCATGTTCTGAATTT 57.545 33.333 0.00 0.00 32.72 1.82
4865 6726 4.295870 GAATCAGACGTACATATTCGCCA 58.704 43.478 0.00 0.00 0.00 5.69
4867 6728 4.216731 TCGAATCAGACGTACATATTCGC 58.783 43.478 20.82 0.00 45.15 4.70
4982 6843 1.264020 TGACGTTGATGTGCTTTCTGC 59.736 47.619 0.00 0.00 43.25 4.26
4984 6845 4.320494 GGAAATGACGTTGATGTGCTTTCT 60.320 41.667 0.00 0.00 0.00 2.52
4992 6853 7.516785 CGGATAAACTAGGAAATGACGTTGATG 60.517 40.741 0.00 0.00 0.00 3.07
5050 6911 5.052693 TGCCATGCTCTTGGAAATACTAT 57.947 39.130 6.04 0.00 39.25 2.12
5060 6921 1.880675 GATCCAGATGCCATGCTCTTG 59.119 52.381 0.00 0.00 0.00 3.02
5061 6922 1.775459 AGATCCAGATGCCATGCTCTT 59.225 47.619 0.00 0.00 0.00 2.85
5062 6923 1.072489 CAGATCCAGATGCCATGCTCT 59.928 52.381 0.00 0.00 0.00 4.09
5065 6926 0.178998 ACCAGATCCAGATGCCATGC 60.179 55.000 0.00 0.00 0.00 4.06
5066 6927 2.228059 GAACCAGATCCAGATGCCATG 58.772 52.381 0.00 0.00 0.00 3.66
5067 6928 1.848388 TGAACCAGATCCAGATGCCAT 59.152 47.619 0.00 0.00 0.00 4.40
5069 6930 1.964552 CTGAACCAGATCCAGATGCC 58.035 55.000 0.00 0.00 32.44 4.40
5070 6931 1.134159 AGCTGAACCAGATCCAGATGC 60.134 52.381 0.00 0.00 32.44 3.91
5071 6932 2.435069 AGAGCTGAACCAGATCCAGATG 59.565 50.000 8.40 0.00 46.56 2.90
5072 6933 2.761809 AGAGCTGAACCAGATCCAGAT 58.238 47.619 8.40 0.00 46.56 2.90
5073 6934 2.244486 AGAGCTGAACCAGATCCAGA 57.756 50.000 8.40 0.00 46.56 3.86
5110 7608 2.564721 GGCTGCCAGACACAAACCC 61.565 63.158 15.17 0.00 0.00 4.11
5126 7625 2.124403 CAGGTCCTGCAGATGGGC 60.124 66.667 17.39 0.00 0.00 5.36
5157 7656 9.575783 GGTCACTGTTTGTTAAAAGTTATCAAA 57.424 29.630 1.83 1.83 0.00 2.69
5159 7658 7.467539 CGGGTCACTGTTTGTTAAAAGTTATCA 60.468 37.037 0.00 0.00 0.00 2.15
5160 7659 6.854381 CGGGTCACTGTTTGTTAAAAGTTATC 59.146 38.462 0.00 0.00 0.00 1.75
5184 7689 1.333791 GCCGACTGGTTTTCTGAAACG 60.334 52.381 1.58 2.25 44.83 3.60
5260 7793 3.036783 GACGAGGAGACCGTGGACG 62.037 68.421 0.00 0.00 40.67 4.79
5261 7794 1.313812 ATGACGAGGAGACCGTGGAC 61.314 60.000 0.00 0.00 40.67 4.02
5262 7795 1.001269 ATGACGAGGAGACCGTGGA 60.001 57.895 0.00 0.00 40.67 4.02
5263 7796 1.139734 CATGACGAGGAGACCGTGG 59.860 63.158 0.00 0.00 40.67 4.94
5264 7797 1.092348 TACATGACGAGGAGACCGTG 58.908 55.000 0.00 0.00 40.67 4.94
5265 7798 1.830279 TTACATGACGAGGAGACCGT 58.170 50.000 0.00 0.00 43.56 4.83
5308 7842 2.851263 ACTACCAAACGATCAAGGCA 57.149 45.000 0.00 0.00 0.00 4.75
5460 8007 1.925255 ACTGGATGTGGTGGATCCATT 59.075 47.619 19.62 0.57 46.65 3.16
5495 8042 0.826672 TTTTTAGCGGGGCCGGAAAA 60.827 50.000 16.19 10.53 40.19 2.29
5500 8048 3.051479 ACGTTTTTAGCGGGGCCG 61.051 61.111 0.00 0.00 43.09 6.13
5666 8214 2.364632 CCGCACAAGTAATCATTGGGA 58.635 47.619 0.00 0.00 32.60 4.37
5668 8216 2.355756 CTCCCGCACAAGTAATCATTGG 59.644 50.000 0.00 0.00 31.76 3.16
5670 8218 2.017049 GCTCCCGCACAAGTAATCATT 58.983 47.619 0.00 0.00 35.78 2.57
5677 8227 4.379243 CGAGGCTCCCGCACAAGT 62.379 66.667 9.32 0.00 38.10 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.