Multiple sequence alignment - TraesCS2D01G368200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G368200 chr2D 100.000 2267 0 0 1 2267 472859871 472862137 0.000000e+00 4187.0
1 TraesCS2D01G368200 chr2A 90.052 1528 72 39 634 2115 614384150 614385643 0.000000e+00 1906.0
2 TraesCS2D01G368200 chr2A 92.169 166 13 0 332 497 614162514 614162679 3.760000e-58 235.0
3 TraesCS2D01G368200 chr2B 89.551 1359 54 29 523 1825 552028373 552029699 0.000000e+00 1642.0
4 TraesCS2D01G368200 chr2B 87.923 414 37 8 1859 2265 552029699 552030106 2.040000e-130 475.0
5 TraesCS2D01G368200 chr7B 86.119 353 37 8 1 345 640250902 640251250 9.890000e-99 370.0
6 TraesCS2D01G368200 chr3A 86.527 334 37 6 1 331 628918980 628919308 5.950000e-96 361.0
7 TraesCS2D01G368200 chr3A 85.672 335 40 6 1 332 696208786 696209115 1.670000e-91 346.0
8 TraesCS2D01G368200 chr7D 86.626 329 36 6 1 326 39254037 39253714 7.700000e-95 357.0
9 TraesCS2D01G368200 chr7D 85.886 333 40 5 1 331 107507732 107508059 4.630000e-92 348.0
10 TraesCS2D01G368200 chr5D 86.257 342 27 15 1 334 373783167 373782838 9.960000e-94 353.0
11 TraesCS2D01G368200 chr5D 85.714 343 31 14 1 332 41826942 41827277 1.670000e-91 346.0
12 TraesCS2D01G368200 chr1A 86.462 325 37 3 12 333 405094138 405094458 1.290000e-92 350.0
13 TraesCS2D01G368200 chr4A 85.933 327 38 6 3 326 644640941 644640620 2.160000e-90 342.0
14 TraesCS2D01G368200 chr4D 96.970 33 1 0 1233 1265 503611359 503611327 3.150000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G368200 chr2D 472859871 472862137 2266 False 4187.0 4187 100.000 1 2267 1 chr2D.!!$F1 2266
1 TraesCS2D01G368200 chr2A 614384150 614385643 1493 False 1906.0 1906 90.052 634 2115 1 chr2A.!!$F2 1481
2 TraesCS2D01G368200 chr2B 552028373 552030106 1733 False 1058.5 1642 88.737 523 2265 2 chr2B.!!$F1 1742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.031585 TATTCGGCTCGGACATTCGG 59.968 55.0 0.0 0.0 0.00 4.3 F
218 219 0.038744 AGGTGTTGCCAAGATGGAGG 59.961 55.0 0.0 0.0 40.96 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1029 1083 0.107945 GGAGAAGCACTGCCAGTAGG 60.108 60.0 0.0 0.0 38.23 3.18 R
2195 2278 0.394938 AATGTGGGCGTGTACAGTGA 59.605 50.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.048503 GGAAGACGGTGGTGACGG 60.049 66.667 0.00 0.00 35.23 4.79
18 19 2.737376 GAAGACGGTGGTGACGGC 60.737 66.667 0.00 0.00 40.35 5.68
19 20 4.309950 AAGACGGTGGTGACGGCC 62.310 66.667 0.00 0.00 41.14 6.13
25 26 4.947147 GTGGTGACGGCCCTTGCA 62.947 66.667 0.00 0.00 40.13 4.08
26 27 4.641645 TGGTGACGGCCCTTGCAG 62.642 66.667 0.00 0.00 40.13 4.41
41 42 4.746951 CAGCGTGCGCATGTGGTG 62.747 66.667 29.00 23.86 44.88 4.17
43 44 4.741781 GCGTGCGCATGTGGTGTC 62.742 66.667 29.00 9.07 41.49 3.67
44 45 4.088762 CGTGCGCATGTGGTGTCC 62.089 66.667 21.57 0.00 0.00 4.02
45 46 2.977456 GTGCGCATGTGGTGTCCA 60.977 61.111 15.91 0.00 0.00 4.02
46 47 2.033911 TGCGCATGTGGTGTCCAT 59.966 55.556 5.66 0.00 35.28 3.41
47 48 1.603171 TGCGCATGTGGTGTCCATT 60.603 52.632 5.66 0.00 35.28 3.16
48 49 1.153978 GCGCATGTGGTGTCCATTG 60.154 57.895 8.62 0.00 35.28 2.82
49 50 1.585267 GCGCATGTGGTGTCCATTGA 61.585 55.000 8.62 0.00 35.28 2.57
50 51 0.448990 CGCATGTGGTGTCCATTGAG 59.551 55.000 0.00 0.63 35.28 3.02
51 52 1.825090 GCATGTGGTGTCCATTGAGA 58.175 50.000 0.00 0.00 35.28 3.27
52 53 1.741706 GCATGTGGTGTCCATTGAGAG 59.258 52.381 0.00 0.00 35.28 3.20
53 54 2.877300 GCATGTGGTGTCCATTGAGAGT 60.877 50.000 0.00 0.00 35.28 3.24
54 55 2.549064 TGTGGTGTCCATTGAGAGTG 57.451 50.000 0.00 0.00 35.28 3.51
55 56 1.160137 GTGGTGTCCATTGAGAGTGC 58.840 55.000 0.00 0.00 35.28 4.40
56 57 0.320683 TGGTGTCCATTGAGAGTGCG 60.321 55.000 0.00 0.00 0.00 5.34
57 58 1.639298 GGTGTCCATTGAGAGTGCGC 61.639 60.000 0.00 0.00 0.00 6.09
58 59 1.375908 TGTCCATTGAGAGTGCGCC 60.376 57.895 4.18 0.00 0.00 6.53
59 60 2.125552 TCCATTGAGAGTGCGCCG 60.126 61.111 4.18 0.00 0.00 6.46
60 61 3.197790 CCATTGAGAGTGCGCCGG 61.198 66.667 4.18 0.00 0.00 6.13
61 62 2.125552 CATTGAGAGTGCGCCGGA 60.126 61.111 5.05 0.00 0.00 5.14
62 63 2.125512 ATTGAGAGTGCGCCGGAC 60.126 61.111 5.05 0.00 0.00 4.79
63 64 3.665675 ATTGAGAGTGCGCCGGACC 62.666 63.158 5.05 0.00 0.00 4.46
72 73 4.429212 CGCCGGACCGATGTGTGA 62.429 66.667 17.49 0.00 0.00 3.58
73 74 2.813908 GCCGGACCGATGTGTGAC 60.814 66.667 17.49 0.00 0.00 3.67
74 75 2.125673 CCGGACCGATGTGTGACC 60.126 66.667 17.49 0.00 0.00 4.02
75 76 2.125673 CGGACCGATGTGTGACCC 60.126 66.667 8.64 0.00 0.00 4.46
76 77 2.938086 CGGACCGATGTGTGACCCA 61.938 63.158 8.64 0.00 0.00 4.51
77 78 1.079127 GGACCGATGTGTGACCCAG 60.079 63.158 0.00 0.00 0.00 4.45
78 79 1.671742 GACCGATGTGTGACCCAGT 59.328 57.895 0.00 0.00 0.00 4.00
79 80 0.389948 GACCGATGTGTGACCCAGTC 60.390 60.000 0.00 0.00 0.00 3.51
80 81 1.079127 CCGATGTGTGACCCAGTCC 60.079 63.158 0.00 0.00 0.00 3.85
81 82 1.079127 CGATGTGTGACCCAGTCCC 60.079 63.158 0.00 0.00 0.00 4.46
82 83 1.079127 GATGTGTGACCCAGTCCCG 60.079 63.158 0.00 0.00 0.00 5.14
83 84 2.521958 GATGTGTGACCCAGTCCCGG 62.522 65.000 0.00 0.00 0.00 5.73
84 85 4.699522 GTGTGACCCAGTCCCGGC 62.700 72.222 0.00 0.00 0.00 6.13
86 87 3.717294 GTGACCCAGTCCCGGCAT 61.717 66.667 0.00 0.00 0.00 4.40
87 88 2.933287 TGACCCAGTCCCGGCATT 60.933 61.111 0.00 0.00 0.00 3.56
88 89 2.438434 GACCCAGTCCCGGCATTG 60.438 66.667 0.00 0.00 0.00 2.82
89 90 3.256960 ACCCAGTCCCGGCATTGT 61.257 61.111 0.00 0.00 0.00 2.71
90 91 2.751436 CCCAGTCCCGGCATTGTG 60.751 66.667 0.00 0.00 0.00 3.33
91 92 2.751436 CCAGTCCCGGCATTGTGG 60.751 66.667 0.00 0.00 0.00 4.17
92 93 3.443045 CAGTCCCGGCATTGTGGC 61.443 66.667 0.00 0.00 39.85 5.01
93 94 3.650950 AGTCCCGGCATTGTGGCT 61.651 61.111 0.00 0.00 41.25 4.75
94 95 2.676471 GTCCCGGCATTGTGGCTT 60.676 61.111 0.00 0.00 41.25 4.35
95 96 2.676121 TCCCGGCATTGTGGCTTG 60.676 61.111 0.00 0.00 41.25 4.01
96 97 3.762247 CCCGGCATTGTGGCTTGG 61.762 66.667 0.00 0.00 41.25 3.61
97 98 2.676121 CCGGCATTGTGGCTTGGA 60.676 61.111 0.00 0.00 41.25 3.53
98 99 2.053865 CCGGCATTGTGGCTTGGAT 61.054 57.895 0.00 0.00 41.25 3.41
99 100 1.140161 CGGCATTGTGGCTTGGATG 59.860 57.895 2.03 0.00 41.25 3.51
100 101 1.518774 GGCATTGTGGCTTGGATGG 59.481 57.895 0.00 0.00 40.14 3.51
101 102 1.518774 GCATTGTGGCTTGGATGGG 59.481 57.895 0.00 0.00 0.00 4.00
102 103 1.963464 GCATTGTGGCTTGGATGGGG 61.963 60.000 0.00 0.00 0.00 4.96
103 104 0.615544 CATTGTGGCTTGGATGGGGT 60.616 55.000 0.00 0.00 0.00 4.95
104 105 1.006813 ATTGTGGCTTGGATGGGGTA 58.993 50.000 0.00 0.00 0.00 3.69
105 106 0.039035 TTGTGGCTTGGATGGGGTAC 59.961 55.000 0.00 0.00 0.00 3.34
122 123 4.338379 GGTACCTGGCCTTAGATGTTAG 57.662 50.000 4.06 0.00 0.00 2.34
123 124 3.071167 GGTACCTGGCCTTAGATGTTAGG 59.929 52.174 4.06 0.52 34.54 2.69
124 125 3.130734 ACCTGGCCTTAGATGTTAGGA 57.869 47.619 3.32 0.00 33.13 2.94
125 126 3.669949 ACCTGGCCTTAGATGTTAGGAT 58.330 45.455 3.32 0.00 33.13 3.24
126 127 4.047883 ACCTGGCCTTAGATGTTAGGATT 58.952 43.478 3.32 0.00 33.13 3.01
127 128 4.478686 ACCTGGCCTTAGATGTTAGGATTT 59.521 41.667 3.32 0.00 33.13 2.17
128 129 4.823989 CCTGGCCTTAGATGTTAGGATTTG 59.176 45.833 3.32 0.00 33.13 2.32
129 130 4.792068 TGGCCTTAGATGTTAGGATTTGG 58.208 43.478 3.32 0.00 33.13 3.28
130 131 4.229582 TGGCCTTAGATGTTAGGATTTGGT 59.770 41.667 3.32 0.00 33.13 3.67
131 132 4.580580 GGCCTTAGATGTTAGGATTTGGTG 59.419 45.833 0.00 0.00 33.13 4.17
132 133 4.036852 GCCTTAGATGTTAGGATTTGGTGC 59.963 45.833 0.00 0.00 33.13 5.01
133 134 4.273480 CCTTAGATGTTAGGATTTGGTGCG 59.727 45.833 0.00 0.00 33.13 5.34
134 135 3.627395 AGATGTTAGGATTTGGTGCGA 57.373 42.857 0.00 0.00 0.00 5.10
135 136 4.156455 AGATGTTAGGATTTGGTGCGAT 57.844 40.909 0.00 0.00 0.00 4.58
136 137 3.879295 AGATGTTAGGATTTGGTGCGATG 59.121 43.478 0.00 0.00 0.00 3.84
137 138 3.066291 TGTTAGGATTTGGTGCGATGT 57.934 42.857 0.00 0.00 0.00 3.06
138 139 3.006940 TGTTAGGATTTGGTGCGATGTC 58.993 45.455 0.00 0.00 0.00 3.06
139 140 2.325583 TAGGATTTGGTGCGATGTCC 57.674 50.000 0.00 0.00 0.00 4.02
140 141 0.744414 AGGATTTGGTGCGATGTCCG 60.744 55.000 0.00 0.00 42.21 4.79
141 142 1.024579 GGATTTGGTGCGATGTCCGT 61.025 55.000 0.00 0.00 41.15 4.69
142 143 0.802494 GATTTGGTGCGATGTCCGTT 59.198 50.000 0.00 0.00 41.15 4.44
143 144 1.199097 GATTTGGTGCGATGTCCGTTT 59.801 47.619 0.00 0.00 41.15 3.60
144 145 0.309302 TTTGGTGCGATGTCCGTTTG 59.691 50.000 0.00 0.00 41.15 2.93
145 146 1.511318 TTGGTGCGATGTCCGTTTGG 61.511 55.000 0.00 0.00 41.15 3.28
146 147 1.964373 GGTGCGATGTCCGTTTGGT 60.964 57.895 0.00 0.00 41.15 3.67
147 148 0.671163 GGTGCGATGTCCGTTTGGTA 60.671 55.000 0.00 0.00 41.15 3.25
148 149 1.365699 GTGCGATGTCCGTTTGGTAT 58.634 50.000 0.00 0.00 41.15 2.73
149 150 1.735571 GTGCGATGTCCGTTTGGTATT 59.264 47.619 0.00 0.00 41.15 1.89
150 151 2.004017 TGCGATGTCCGTTTGGTATTC 58.996 47.619 0.00 0.00 41.15 1.75
151 152 1.005347 GCGATGTCCGTTTGGTATTCG 60.005 52.381 0.00 0.00 41.15 3.34
152 153 1.591158 CGATGTCCGTTTGGTATTCGG 59.409 52.381 0.00 0.00 44.76 4.30
153 154 1.329599 GATGTCCGTTTGGTATTCGGC 59.670 52.381 0.00 0.00 43.35 5.54
154 155 0.322322 TGTCCGTTTGGTATTCGGCT 59.678 50.000 0.00 0.00 43.35 5.52
155 156 1.004595 GTCCGTTTGGTATTCGGCTC 58.995 55.000 0.00 0.00 43.35 4.70
156 157 0.458889 TCCGTTTGGTATTCGGCTCG 60.459 55.000 0.00 0.00 43.35 5.03
157 158 1.426041 CCGTTTGGTATTCGGCTCGG 61.426 60.000 0.00 0.00 37.90 4.63
158 159 0.458889 CGTTTGGTATTCGGCTCGGA 60.459 55.000 0.00 0.00 0.00 4.55
159 160 1.004595 GTTTGGTATTCGGCTCGGAC 58.995 55.000 0.00 0.00 0.00 4.79
160 161 0.609151 TTTGGTATTCGGCTCGGACA 59.391 50.000 0.00 0.00 0.00 4.02
161 162 0.828022 TTGGTATTCGGCTCGGACAT 59.172 50.000 0.00 0.00 0.00 3.06
162 163 0.828022 TGGTATTCGGCTCGGACATT 59.172 50.000 0.00 0.00 0.00 2.71
163 164 1.202486 TGGTATTCGGCTCGGACATTC 60.202 52.381 0.00 0.00 0.00 2.67
164 165 1.129326 GTATTCGGCTCGGACATTCG 58.871 55.000 0.00 0.00 0.00 3.34
165 166 0.031585 TATTCGGCTCGGACATTCGG 59.968 55.000 0.00 0.00 0.00 4.30
166 167 3.870656 TATTCGGCTCGGACATTCGGC 62.871 57.143 0.00 0.00 0.00 5.54
167 168 4.812476 CGGCTCGGACATTCGGCA 62.812 66.667 0.00 0.00 0.00 5.69
168 169 2.203070 GGCTCGGACATTCGGCAT 60.203 61.111 0.00 0.00 0.00 4.40
169 170 2.247437 GGCTCGGACATTCGGCATC 61.247 63.158 0.00 0.00 0.00 3.91
170 171 2.247437 GCTCGGACATTCGGCATCC 61.247 63.158 0.00 0.00 0.00 3.51
171 172 1.595382 CTCGGACATTCGGCATCCC 60.595 63.158 0.00 0.00 0.00 3.85
172 173 2.032860 CTCGGACATTCGGCATCCCT 62.033 60.000 0.00 0.00 0.00 4.20
173 174 1.153168 CGGACATTCGGCATCCCTT 60.153 57.895 0.00 0.00 0.00 3.95
174 175 0.748005 CGGACATTCGGCATCCCTTT 60.748 55.000 0.00 0.00 0.00 3.11
175 176 1.025041 GGACATTCGGCATCCCTTTC 58.975 55.000 0.00 0.00 0.00 2.62
176 177 1.681780 GGACATTCGGCATCCCTTTCA 60.682 52.381 0.00 0.00 0.00 2.69
177 178 2.301346 GACATTCGGCATCCCTTTCAT 58.699 47.619 0.00 0.00 0.00 2.57
178 179 2.689983 GACATTCGGCATCCCTTTCATT 59.310 45.455 0.00 0.00 0.00 2.57
179 180 3.882888 GACATTCGGCATCCCTTTCATTA 59.117 43.478 0.00 0.00 0.00 1.90
180 181 4.277476 ACATTCGGCATCCCTTTCATTAA 58.723 39.130 0.00 0.00 0.00 1.40
181 182 4.339247 ACATTCGGCATCCCTTTCATTAAG 59.661 41.667 0.00 0.00 0.00 1.85
195 196 6.435292 TTTCATTAAGGGGATAGGAGTAGC 57.565 41.667 0.00 0.00 0.00 3.58
196 197 4.087182 TCATTAAGGGGATAGGAGTAGCG 58.913 47.826 0.00 0.00 0.00 4.26
197 198 3.889859 TTAAGGGGATAGGAGTAGCGA 57.110 47.619 0.00 0.00 0.00 4.93
198 199 1.998222 AAGGGGATAGGAGTAGCGAC 58.002 55.000 0.00 0.00 0.00 5.19
199 200 0.851469 AGGGGATAGGAGTAGCGACA 59.149 55.000 0.00 0.00 0.00 4.35
200 201 1.202952 AGGGGATAGGAGTAGCGACAG 60.203 57.143 0.00 0.00 0.00 3.51
201 202 1.249407 GGGATAGGAGTAGCGACAGG 58.751 60.000 0.00 0.00 0.00 4.00
202 203 1.479021 GGGATAGGAGTAGCGACAGGT 60.479 57.143 0.00 0.00 0.00 4.00
203 204 1.609555 GGATAGGAGTAGCGACAGGTG 59.390 57.143 0.00 0.00 0.00 4.00
204 205 2.299521 GATAGGAGTAGCGACAGGTGT 58.700 52.381 0.00 0.00 0.00 4.16
205 206 2.211250 TAGGAGTAGCGACAGGTGTT 57.789 50.000 0.00 0.00 0.00 3.32
206 207 0.603569 AGGAGTAGCGACAGGTGTTG 59.396 55.000 0.00 0.00 0.00 3.33
212 213 4.454948 CGACAGGTGTTGCCAAGA 57.545 55.556 0.00 0.00 40.61 3.02
213 214 2.932663 CGACAGGTGTTGCCAAGAT 58.067 52.632 0.00 0.00 40.61 2.40
214 215 0.518636 CGACAGGTGTTGCCAAGATG 59.481 55.000 0.00 0.00 40.61 2.90
215 216 0.883833 GACAGGTGTTGCCAAGATGG 59.116 55.000 0.00 0.00 41.55 3.51
216 217 0.478072 ACAGGTGTTGCCAAGATGGA 59.522 50.000 0.00 0.00 40.96 3.41
217 218 1.171308 CAGGTGTTGCCAAGATGGAG 58.829 55.000 0.00 0.00 40.96 3.86
218 219 0.038744 AGGTGTTGCCAAGATGGAGG 59.961 55.000 0.00 0.00 40.96 4.30
225 226 3.491208 CCAAGATGGAGGCTTCAGG 57.509 57.895 0.19 0.00 40.96 3.86
226 227 0.622665 CCAAGATGGAGGCTTCAGGT 59.377 55.000 0.19 0.00 40.96 4.00
227 228 1.005215 CCAAGATGGAGGCTTCAGGTT 59.995 52.381 0.19 0.00 40.96 3.50
228 229 2.556114 CCAAGATGGAGGCTTCAGGTTT 60.556 50.000 0.19 0.00 40.96 3.27
229 230 3.308402 CCAAGATGGAGGCTTCAGGTTTA 60.308 47.826 0.19 0.00 40.96 2.01
230 231 3.636153 AGATGGAGGCTTCAGGTTTAC 57.364 47.619 0.19 0.00 0.00 2.01
231 232 3.185455 AGATGGAGGCTTCAGGTTTACT 58.815 45.455 0.19 0.00 0.00 2.24
256 257 9.530633 CTGATGTACTATTACTTTGTAAGGTCC 57.469 37.037 0.00 0.00 0.00 4.46
257 258 9.263446 TGATGTACTATTACTTTGTAAGGTCCT 57.737 33.333 0.00 0.00 0.00 3.85
259 260 9.886132 ATGTACTATTACTTTGTAAGGTCCTTG 57.114 33.333 14.84 0.00 0.00 3.61
260 261 8.873144 TGTACTATTACTTTGTAAGGTCCTTGT 58.127 33.333 14.84 5.63 0.00 3.16
261 262 9.148104 GTACTATTACTTTGTAAGGTCCTTGTG 57.852 37.037 14.84 2.56 0.00 3.33
262 263 7.970102 ACTATTACTTTGTAAGGTCCTTGTGA 58.030 34.615 14.84 0.34 0.00 3.58
263 264 8.434392 ACTATTACTTTGTAAGGTCCTTGTGAA 58.566 33.333 14.84 5.03 0.00 3.18
264 265 9.449719 CTATTACTTTGTAAGGTCCTTGTGAAT 57.550 33.333 14.84 6.66 0.00 2.57
266 267 9.802039 ATTACTTTGTAAGGTCCTTGTGAATAA 57.198 29.630 14.84 6.48 0.00 1.40
267 268 9.802039 TTACTTTGTAAGGTCCTTGTGAATAAT 57.198 29.630 14.84 0.00 0.00 1.28
268 269 8.706322 ACTTTGTAAGGTCCTTGTGAATAATT 57.294 30.769 14.84 0.00 0.00 1.40
269 270 9.802039 ACTTTGTAAGGTCCTTGTGAATAATTA 57.198 29.630 14.84 0.00 0.00 1.40
286 287 9.190858 TGAATAATTAATAAAATGACCGCATGC 57.809 29.630 7.91 7.91 34.26 4.06
287 288 9.190858 GAATAATTAATAAAATGACCGCATGCA 57.809 29.630 19.57 0.00 34.26 3.96
288 289 9.709495 AATAATTAATAAAATGACCGCATGCAT 57.291 25.926 19.57 4.56 34.26 3.96
289 290 7.642071 AATTAATAAAATGACCGCATGCATC 57.358 32.000 19.57 14.88 34.26 3.91
290 291 2.753989 TAAAATGACCGCATGCATCG 57.246 45.000 19.57 6.69 34.26 3.84
291 292 0.526096 AAAATGACCGCATGCATCGC 60.526 50.000 19.57 3.47 34.26 4.58
292 293 2.340453 AAATGACCGCATGCATCGCC 62.340 55.000 19.57 2.12 34.26 5.54
297 298 2.976350 CGCATGCATCGCCCAGAT 60.976 61.111 19.57 0.00 41.01 2.90
310 311 3.151710 CAGATGCGGTCGGGGGTA 61.152 66.667 0.00 0.00 0.00 3.69
311 312 2.122989 AGATGCGGTCGGGGGTAT 60.123 61.111 0.00 0.00 0.00 2.73
312 313 1.154454 AGATGCGGTCGGGGGTATA 59.846 57.895 0.00 0.00 0.00 1.47
313 314 0.252103 AGATGCGGTCGGGGGTATAT 60.252 55.000 0.00 0.00 0.00 0.86
314 315 0.175073 GATGCGGTCGGGGGTATATC 59.825 60.000 0.00 0.00 0.00 1.63
315 316 1.262640 ATGCGGTCGGGGGTATATCC 61.263 60.000 0.00 0.00 0.00 2.59
316 317 1.608627 GCGGTCGGGGGTATATCCT 60.609 63.158 1.07 0.00 36.25 3.24
317 318 1.602327 GCGGTCGGGGGTATATCCTC 61.602 65.000 1.07 0.00 36.25 3.71
354 355 9.546428 AAAATGTTCCTTCTGTTTTTCTATTGG 57.454 29.630 0.00 0.00 0.00 3.16
355 356 6.084326 TGTTCCTTCTGTTTTTCTATTGGC 57.916 37.500 0.00 0.00 0.00 4.52
356 357 5.833131 TGTTCCTTCTGTTTTTCTATTGGCT 59.167 36.000 0.00 0.00 0.00 4.75
357 358 6.016276 TGTTCCTTCTGTTTTTCTATTGGCTC 60.016 38.462 0.00 0.00 0.00 4.70
358 359 5.630121 TCCTTCTGTTTTTCTATTGGCTCA 58.370 37.500 0.00 0.00 0.00 4.26
359 360 6.068010 TCCTTCTGTTTTTCTATTGGCTCAA 58.932 36.000 0.00 0.00 0.00 3.02
360 361 6.207417 TCCTTCTGTTTTTCTATTGGCTCAAG 59.793 38.462 0.00 0.00 0.00 3.02
361 362 6.207417 CCTTCTGTTTTTCTATTGGCTCAAGA 59.793 38.462 0.00 0.00 0.00 3.02
362 363 7.094032 CCTTCTGTTTTTCTATTGGCTCAAGAT 60.094 37.037 0.00 0.00 0.00 2.40
363 364 7.149569 TCTGTTTTTCTATTGGCTCAAGATG 57.850 36.000 0.00 0.00 0.00 2.90
364 365 5.713025 TGTTTTTCTATTGGCTCAAGATGC 58.287 37.500 0.00 0.00 0.00 3.91
365 366 5.477984 TGTTTTTCTATTGGCTCAAGATGCT 59.522 36.000 0.00 0.00 0.00 3.79
366 367 6.658816 TGTTTTTCTATTGGCTCAAGATGCTA 59.341 34.615 0.00 0.00 0.00 3.49
367 368 6.683974 TTTTCTATTGGCTCAAGATGCTAC 57.316 37.500 0.00 0.00 0.00 3.58
368 369 5.620738 TTCTATTGGCTCAAGATGCTACT 57.379 39.130 0.00 0.00 0.00 2.57
369 370 6.731292 TTCTATTGGCTCAAGATGCTACTA 57.269 37.500 0.00 0.00 0.00 1.82
370 371 6.338214 TCTATTGGCTCAAGATGCTACTAG 57.662 41.667 0.00 0.00 0.00 2.57
371 372 5.835819 TCTATTGGCTCAAGATGCTACTAGT 59.164 40.000 0.00 0.00 30.41 2.57
372 373 7.004691 TCTATTGGCTCAAGATGCTACTAGTA 58.995 38.462 1.89 1.89 30.41 1.82
373 374 5.932619 TTGGCTCAAGATGCTACTAGTAA 57.067 39.130 3.76 0.00 0.00 2.24
374 375 6.485830 TTGGCTCAAGATGCTACTAGTAAT 57.514 37.500 3.76 0.00 0.00 1.89
375 376 6.485830 TGGCTCAAGATGCTACTAGTAATT 57.514 37.500 3.76 0.00 0.00 1.40
376 377 7.597288 TGGCTCAAGATGCTACTAGTAATTA 57.403 36.000 3.76 0.00 0.00 1.40
377 378 8.195165 TGGCTCAAGATGCTACTAGTAATTAT 57.805 34.615 3.76 0.00 0.00 1.28
378 379 8.651389 TGGCTCAAGATGCTACTAGTAATTATT 58.349 33.333 3.76 0.00 0.00 1.40
379 380 9.495572 GGCTCAAGATGCTACTAGTAATTATTT 57.504 33.333 3.76 0.00 0.00 1.40
404 405 9.944663 TTTTTCACATGTCAGTTTTATCACTAC 57.055 29.630 0.00 0.00 0.00 2.73
405 406 7.667043 TTCACATGTCAGTTTTATCACTACC 57.333 36.000 0.00 0.00 0.00 3.18
406 407 7.004555 TCACATGTCAGTTTTATCACTACCT 57.995 36.000 0.00 0.00 0.00 3.08
407 408 6.873605 TCACATGTCAGTTTTATCACTACCTG 59.126 38.462 0.00 0.00 0.00 4.00
408 409 6.873605 CACATGTCAGTTTTATCACTACCTGA 59.126 38.462 0.00 0.00 0.00 3.86
409 410 7.550551 CACATGTCAGTTTTATCACTACCTGAT 59.449 37.037 0.00 0.00 42.68 2.90
410 411 8.103305 ACATGTCAGTTTTATCACTACCTGATT 58.897 33.333 0.00 0.00 40.38 2.57
411 412 8.950210 CATGTCAGTTTTATCACTACCTGATTT 58.050 33.333 0.00 0.00 40.38 2.17
412 413 8.322906 TGTCAGTTTTATCACTACCTGATTTG 57.677 34.615 0.00 0.00 40.38 2.32
413 414 8.154203 TGTCAGTTTTATCACTACCTGATTTGA 58.846 33.333 0.00 0.00 40.38 2.69
414 415 9.167311 GTCAGTTTTATCACTACCTGATTTGAT 57.833 33.333 0.00 0.00 40.38 2.57
415 416 9.383519 TCAGTTTTATCACTACCTGATTTGATC 57.616 33.333 0.00 0.00 40.38 2.92
416 417 9.166173 CAGTTTTATCACTACCTGATTTGATCA 57.834 33.333 0.00 0.00 40.38 2.92
417 418 9.739276 AGTTTTATCACTACCTGATTTGATCAA 57.261 29.630 3.38 3.38 40.38 2.57
418 419 9.994432 GTTTTATCACTACCTGATTTGATCAAG 57.006 33.333 8.41 0.00 40.38 3.02
419 420 8.737168 TTTATCACTACCTGATTTGATCAAGG 57.263 34.615 8.41 8.88 40.38 3.61
420 421 6.566079 ATCACTACCTGATTTGATCAAGGA 57.434 37.500 16.49 0.22 35.99 3.36
421 422 6.566079 TCACTACCTGATTTGATCAAGGAT 57.434 37.500 16.49 5.33 39.11 3.24
422 423 6.351711 TCACTACCTGATTTGATCAAGGATG 58.648 40.000 16.49 11.42 39.11 3.51
423 424 5.530171 CACTACCTGATTTGATCAAGGATGG 59.470 44.000 16.49 15.16 39.11 3.51
424 425 3.294214 ACCTGATTTGATCAAGGATGGC 58.706 45.455 16.49 2.28 39.11 4.40
425 426 3.293337 CCTGATTTGATCAAGGATGGCA 58.707 45.455 8.41 0.00 39.11 4.92
426 427 3.895656 CCTGATTTGATCAAGGATGGCAT 59.104 43.478 8.41 0.00 39.11 4.40
427 428 5.074804 CCTGATTTGATCAAGGATGGCATA 58.925 41.667 8.41 0.00 39.11 3.14
428 429 5.537295 CCTGATTTGATCAAGGATGGCATAA 59.463 40.000 8.41 0.00 39.11 1.90
429 430 6.041182 CCTGATTTGATCAAGGATGGCATAAA 59.959 38.462 8.41 0.00 39.11 1.40
430 431 6.808829 TGATTTGATCAAGGATGGCATAAAC 58.191 36.000 8.41 0.00 36.11 2.01
431 432 6.608405 TGATTTGATCAAGGATGGCATAAACT 59.392 34.615 8.41 0.00 36.11 2.66
432 433 6.455360 TTTGATCAAGGATGGCATAAACTC 57.545 37.500 8.41 0.00 0.00 3.01
433 434 5.378230 TGATCAAGGATGGCATAAACTCT 57.622 39.130 0.00 0.00 0.00 3.24
434 435 5.759059 TGATCAAGGATGGCATAAACTCTT 58.241 37.500 0.00 0.00 0.00 2.85
435 436 5.591472 TGATCAAGGATGGCATAAACTCTTG 59.409 40.000 0.00 9.74 33.55 3.02
436 437 5.178096 TCAAGGATGGCATAAACTCTTGA 57.822 39.130 17.56 17.56 37.41 3.02
437 438 5.569355 TCAAGGATGGCATAAACTCTTGAA 58.431 37.500 18.43 9.13 37.00 2.69
438 439 6.009589 TCAAGGATGGCATAAACTCTTGAAA 58.990 36.000 18.43 6.10 37.00 2.69
439 440 6.664816 TCAAGGATGGCATAAACTCTTGAAAT 59.335 34.615 18.43 0.00 37.00 2.17
440 441 6.461110 AGGATGGCATAAACTCTTGAAATG 57.539 37.500 0.00 0.00 0.00 2.32
441 442 5.045872 GGATGGCATAAACTCTTGAAATGC 58.954 41.667 0.00 0.00 41.69 3.56
442 443 5.394443 GGATGGCATAAACTCTTGAAATGCA 60.394 40.000 0.00 0.00 43.67 3.96
443 444 5.063180 TGGCATAAACTCTTGAAATGCAG 57.937 39.130 7.77 0.00 43.67 4.41
444 445 4.082081 TGGCATAAACTCTTGAAATGCAGG 60.082 41.667 7.77 0.00 43.67 4.85
445 446 4.427312 GCATAAACTCTTGAAATGCAGGG 58.573 43.478 0.00 0.00 41.94 4.45
446 447 4.427312 CATAAACTCTTGAAATGCAGGGC 58.573 43.478 0.00 0.00 0.00 5.19
447 448 1.260544 AACTCTTGAAATGCAGGGCC 58.739 50.000 0.00 0.00 0.00 5.80
448 449 0.112995 ACTCTTGAAATGCAGGGCCA 59.887 50.000 6.18 0.00 0.00 5.36
449 450 1.272872 ACTCTTGAAATGCAGGGCCAT 60.273 47.619 6.18 0.00 0.00 4.40
450 451 1.407979 CTCTTGAAATGCAGGGCCATC 59.592 52.381 6.18 0.00 0.00 3.51
451 452 0.462789 CTTGAAATGCAGGGCCATCC 59.537 55.000 6.18 0.00 0.00 3.51
453 454 0.041535 TGAAATGCAGGGCCATCCTT 59.958 50.000 6.18 0.00 45.47 3.36
454 455 1.287442 TGAAATGCAGGGCCATCCTTA 59.713 47.619 6.18 0.00 45.47 2.69
455 456 1.959282 GAAATGCAGGGCCATCCTTAG 59.041 52.381 6.18 0.00 45.47 2.18
456 457 0.186873 AATGCAGGGCCATCCTTAGG 59.813 55.000 6.18 0.00 45.47 2.69
457 458 1.723128 ATGCAGGGCCATCCTTAGGG 61.723 60.000 6.18 0.00 45.47 3.53
458 459 2.386935 GCAGGGCCATCCTTAGGGT 61.387 63.158 6.18 0.00 45.47 4.34
459 460 1.937924 GCAGGGCCATCCTTAGGGTT 61.938 60.000 6.18 0.00 45.47 4.11
460 461 0.183731 CAGGGCCATCCTTAGGGTTC 59.816 60.000 6.18 0.00 45.47 3.62
461 462 0.253630 AGGGCCATCCTTAGGGTTCA 60.254 55.000 6.18 0.00 45.47 3.18
462 463 0.106669 GGGCCATCCTTAGGGTTCAC 60.107 60.000 4.39 0.00 0.00 3.18
463 464 0.106669 GGCCATCCTTAGGGTTCACC 60.107 60.000 0.00 0.00 40.67 4.02
464 465 0.623723 GCCATCCTTAGGGTTCACCA 59.376 55.000 0.00 0.00 43.89 4.17
465 466 1.682087 GCCATCCTTAGGGTTCACCAC 60.682 57.143 0.00 0.00 43.89 4.16
466 467 1.406887 CCATCCTTAGGGTTCACCACG 60.407 57.143 0.00 0.00 43.89 4.94
467 468 0.252197 ATCCTTAGGGTTCACCACGC 59.748 55.000 0.00 0.00 43.89 5.34
468 469 1.376812 CCTTAGGGTTCACCACGCC 60.377 63.158 0.00 0.00 43.89 5.68
469 470 1.373435 CTTAGGGTTCACCACGCCA 59.627 57.895 0.00 0.00 43.89 5.69
470 471 0.953960 CTTAGGGTTCACCACGCCAC 60.954 60.000 0.00 0.00 43.89 5.01
471 472 2.400269 TTAGGGTTCACCACGCCACC 62.400 60.000 0.00 0.00 43.89 4.61
473 474 4.572571 GGTTCACCACGCCACCCA 62.573 66.667 0.00 0.00 35.64 4.51
474 475 2.517402 GTTCACCACGCCACCCAA 60.517 61.111 0.00 0.00 0.00 4.12
475 476 2.122167 GTTCACCACGCCACCCAAA 61.122 57.895 0.00 0.00 0.00 3.28
476 477 1.826054 TTCACCACGCCACCCAAAG 60.826 57.895 0.00 0.00 0.00 2.77
477 478 3.977244 CACCACGCCACCCAAAGC 61.977 66.667 0.00 0.00 0.00 3.51
478 479 4.514585 ACCACGCCACCCAAAGCA 62.515 61.111 0.00 0.00 0.00 3.91
479 480 3.673484 CCACGCCACCCAAAGCAG 61.673 66.667 0.00 0.00 0.00 4.24
480 481 3.673484 CACGCCACCCAAAGCAGG 61.673 66.667 0.00 0.00 0.00 4.85
489 490 1.631405 CCCAAAGCAGGGTCAAATGA 58.369 50.000 0.99 0.00 44.24 2.57
490 491 2.181975 CCCAAAGCAGGGTCAAATGAT 58.818 47.619 0.99 0.00 44.24 2.45
491 492 2.568509 CCCAAAGCAGGGTCAAATGATT 59.431 45.455 0.99 0.00 44.24 2.57
492 493 3.768757 CCCAAAGCAGGGTCAAATGATTA 59.231 43.478 0.99 0.00 44.24 1.75
493 494 4.222588 CCCAAAGCAGGGTCAAATGATTAA 59.777 41.667 0.99 0.00 44.24 1.40
494 495 5.104817 CCCAAAGCAGGGTCAAATGATTAAT 60.105 40.000 0.99 0.00 44.24 1.40
495 496 6.408869 CCAAAGCAGGGTCAAATGATTAATT 58.591 36.000 0.00 0.00 0.00 1.40
496 497 6.880529 CCAAAGCAGGGTCAAATGATTAATTT 59.119 34.615 0.00 0.00 39.13 1.82
497 498 7.064966 CCAAAGCAGGGTCAAATGATTAATTTC 59.935 37.037 0.00 0.00 36.28 2.17
498 499 6.855763 AGCAGGGTCAAATGATTAATTTCA 57.144 33.333 0.00 0.00 36.28 2.69
499 500 6.633856 AGCAGGGTCAAATGATTAATTTCAC 58.366 36.000 0.00 0.00 36.28 3.18
500 501 6.211184 AGCAGGGTCAAATGATTAATTTCACA 59.789 34.615 0.00 0.00 36.28 3.58
501 502 7.043565 GCAGGGTCAAATGATTAATTTCACAT 58.956 34.615 0.00 0.00 36.28 3.21
502 503 7.223387 GCAGGGTCAAATGATTAATTTCACATC 59.777 37.037 0.00 0.00 36.28 3.06
503 504 8.472413 CAGGGTCAAATGATTAATTTCACATCT 58.528 33.333 0.00 0.00 36.28 2.90
504 505 9.699410 AGGGTCAAATGATTAATTTCACATCTA 57.301 29.630 0.00 0.00 36.28 1.98
505 506 9.736023 GGGTCAAATGATTAATTTCACATCTAC 57.264 33.333 0.00 0.00 36.28 2.59
516 517 9.677567 TTAATTTCACATCTACTTTCACTTTGC 57.322 29.630 0.00 0.00 0.00 3.68
517 518 6.691754 TTTCACATCTACTTTCACTTTGCA 57.308 33.333 0.00 0.00 0.00 4.08
518 519 5.929697 TCACATCTACTTTCACTTTGCAG 57.070 39.130 0.00 0.00 0.00 4.41
519 520 5.368145 TCACATCTACTTTCACTTTGCAGT 58.632 37.500 0.00 0.00 0.00 4.40
531 532 5.611796 CACTTTGCAGTGCTATTGAACTA 57.388 39.130 17.60 0.00 44.16 2.24
593 594 1.178534 ACACAAACGGCCATCCAAGG 61.179 55.000 2.24 0.00 0.00 3.61
631 632 1.750193 ATCATAACCCAACACGGCAG 58.250 50.000 0.00 0.00 0.00 4.85
683 689 4.398988 ACACAACACAAACACATCACATCT 59.601 37.500 0.00 0.00 0.00 2.90
741 757 3.802852 AACCGGCCACCCCTCAAAC 62.803 63.158 0.00 0.00 0.00 2.93
742 758 4.278513 CCGGCCACCCCTCAAACA 62.279 66.667 2.24 0.00 0.00 2.83
743 759 2.203422 CGGCCACCCCTCAAACAA 60.203 61.111 2.24 0.00 0.00 2.83
744 760 1.830408 CGGCCACCCCTCAAACAAA 60.830 57.895 2.24 0.00 0.00 2.83
774 790 1.000019 CTCCCTCCCCTACACACGA 60.000 63.158 0.00 0.00 0.00 4.35
870 912 2.030562 CCAAACACTCCGCTCGGT 59.969 61.111 8.28 0.00 36.47 4.69
901 955 1.060937 CGCTCCATACAAACGCAGC 59.939 57.895 0.00 0.00 0.00 5.25
905 959 2.616960 CTCCATACAAACGCAGCTACA 58.383 47.619 0.00 0.00 0.00 2.74
1236 1293 1.674057 CGACTCCAAGAGGCTGGTT 59.326 57.895 0.00 0.00 35.13 3.67
1324 1381 1.594564 GGAAGAACGCCGGCTATCC 60.595 63.158 26.68 19.26 0.00 2.59
1419 1478 2.890847 ATCGAGCTCCGGAGTTTGCG 62.891 60.000 31.43 24.75 39.14 4.85
1480 1542 7.334090 TCTTCTTCCTCCATGATTTTCACTAG 58.666 38.462 0.00 0.00 0.00 2.57
1481 1543 6.627087 TCTTCCTCCATGATTTTCACTAGT 57.373 37.500 0.00 0.00 0.00 2.57
1482 1544 7.733773 TCTTCCTCCATGATTTTCACTAGTA 57.266 36.000 0.00 0.00 0.00 1.82
1492 1554 7.979444 TGATTTTCACTAGTACTTCTTTGGG 57.021 36.000 0.00 0.00 0.00 4.12
1545 1619 1.246056 TGATTGGGAGCTTGCTGCAC 61.246 55.000 15.49 6.15 45.94 4.57
1549 1623 3.745803 GGAGCTTGCTGCACCTGC 61.746 66.667 0.00 7.60 46.77 4.85
1588 1663 2.825836 GGAGCGGTCAATGGCTGG 60.826 66.667 17.59 0.00 40.16 4.85
1589 1664 3.512516 GAGCGGTCAATGGCTGGC 61.513 66.667 10.30 0.00 40.16 4.85
1590 1665 3.984193 GAGCGGTCAATGGCTGGCT 62.984 63.158 10.30 3.86 40.16 4.75
1591 1666 3.818787 GCGGTCAATGGCTGGCTG 61.819 66.667 2.00 0.00 39.22 4.85
1616 1691 4.324267 CTCAGTGTTTAATTTCCGAGGGT 58.676 43.478 0.00 0.00 0.00 4.34
1874 1951 3.577919 GGTAGGAGATAGGCAGGAAAGA 58.422 50.000 0.00 0.00 0.00 2.52
1883 1960 1.153765 GCAGGAAAGATTTGGCCGC 60.154 57.895 0.00 0.00 0.00 6.53
2029 2106 0.251634 TGCCATCACGGTGCTGATTA 59.748 50.000 13.19 0.00 36.97 1.75
2036 2113 0.036388 ACGGTGCTGATTACCACAGG 60.036 55.000 0.00 0.00 38.11 4.00
2037 2114 0.744414 CGGTGCTGATTACCACAGGG 60.744 60.000 0.00 0.00 38.11 4.45
2038 2115 0.618458 GGTGCTGATTACCACAGGGA 59.382 55.000 0.00 0.00 38.12 4.20
2041 2118 1.555075 TGCTGATTACCACAGGGACTC 59.445 52.381 0.00 0.00 34.60 3.36
2072 2149 1.648467 GGAACAGATGGGCGTTCTGC 61.648 60.000 13.37 1.34 43.57 4.26
2099 2177 4.460948 TTTTTAACCGAGCTATCTCCGT 57.539 40.909 0.00 0.00 35.94 4.69
2101 2179 3.705043 TTAACCGAGCTATCTCCGTTC 57.295 47.619 4.00 0.00 39.94 3.95
2102 2180 0.745468 AACCGAGCTATCTCCGTTCC 59.255 55.000 0.00 0.00 36.50 3.62
2116 2199 5.556915 TCTCCGTTCCACTTTTGACATAAT 58.443 37.500 0.00 0.00 0.00 1.28
2117 2200 6.001460 TCTCCGTTCCACTTTTGACATAATT 58.999 36.000 0.00 0.00 0.00 1.40
2124 2207 8.539674 GTTCCACTTTTGACATAATTGAAACAC 58.460 33.333 0.00 0.00 0.00 3.32
2136 2219 7.491048 ACATAATTGAAACACAACAGTTCCAAC 59.509 33.333 0.00 0.00 41.52 3.77
2137 2220 3.479505 TGAAACACAACAGTTCCAACG 57.520 42.857 0.00 0.00 0.00 4.10
2144 2227 4.092816 CACAACAGTTCCAACGTACAAAC 58.907 43.478 0.00 0.00 0.00 2.93
2146 2229 4.092816 CAACAGTTCCAACGTACAAACAC 58.907 43.478 8.86 0.00 0.00 3.32
2152 2235 3.713288 TCCAACGTACAAACACTCAGAG 58.287 45.455 0.00 0.00 0.00 3.35
2190 2273 3.971150 AGCGAGTTCATGCACTACTATC 58.029 45.455 0.00 0.00 0.00 2.08
2195 2278 6.238211 GCGAGTTCATGCACTACTATCAAATT 60.238 38.462 0.00 0.00 0.00 1.82
2199 2282 7.826252 AGTTCATGCACTACTATCAAATTCACT 59.174 33.333 0.00 0.00 0.00 3.41
2201 2284 7.105588 TCATGCACTACTATCAAATTCACTGT 58.894 34.615 0.00 0.00 0.00 3.55
2206 2289 7.462856 GCACTACTATCAAATTCACTGTACACG 60.463 40.741 0.00 0.00 0.00 4.49
2215 2298 0.516877 CACTGTACACGCCCACATTG 59.483 55.000 0.00 0.00 0.00 2.82
2231 2314 1.037030 ATTGGCACGCTTACCATGGG 61.037 55.000 18.09 0.00 35.42 4.00
2232 2315 2.130821 TTGGCACGCTTACCATGGGA 62.131 55.000 18.09 3.85 35.42 4.37
2233 2316 2.112815 GGCACGCTTACCATGGGAC 61.113 63.158 18.09 0.86 0.00 4.46
2242 2325 2.483014 TACCATGGGACGAAAACCTG 57.517 50.000 18.09 0.00 0.00 4.00
2265 2349 6.223852 TGTTAGCACAAAACAAGTCCAAAAA 58.776 32.000 0.00 0.00 34.04 1.94
2266 2350 6.876257 TGTTAGCACAAAACAAGTCCAAAAAT 59.124 30.769 0.00 0.00 34.04 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.048503 CCGTCACCACCGTCTTCC 60.049 66.667 0.00 0.00 0.00 3.46
1 2 2.737376 GCCGTCACCACCGTCTTC 60.737 66.667 0.00 0.00 0.00 2.87
2 3 4.309950 GGCCGTCACCACCGTCTT 62.310 66.667 0.00 0.00 0.00 3.01
8 9 4.947147 TGCAAGGGCCGTCACCAC 62.947 66.667 0.00 0.00 40.13 4.16
9 10 4.641645 CTGCAAGGGCCGTCACCA 62.642 66.667 0.00 0.00 40.13 4.17
20 21 4.394078 ACATGCGCACGCTGCAAG 62.394 61.111 14.90 10.05 46.87 4.01
21 22 4.686722 CACATGCGCACGCTGCAA 62.687 61.111 14.90 0.00 46.87 4.08
24 25 4.746951 CACCACATGCGCACGCTG 62.747 66.667 14.90 10.70 42.51 5.18
26 27 4.741781 GACACCACATGCGCACGC 62.742 66.667 14.90 8.33 42.35 5.34
27 28 4.088762 GGACACCACATGCGCACG 62.089 66.667 14.90 7.29 0.00 5.34
28 29 1.865788 AATGGACACCACATGCGCAC 61.866 55.000 14.90 0.00 35.80 5.34
29 30 1.603171 AATGGACACCACATGCGCA 60.603 52.632 14.96 14.96 35.80 6.09
30 31 1.153978 CAATGGACACCACATGCGC 60.154 57.895 0.00 0.00 35.80 6.09
31 32 0.448990 CTCAATGGACACCACATGCG 59.551 55.000 0.00 0.00 35.80 4.73
32 33 1.741706 CTCTCAATGGACACCACATGC 59.258 52.381 0.00 0.00 35.80 4.06
33 34 2.745821 CACTCTCAATGGACACCACATG 59.254 50.000 0.00 0.00 35.80 3.21
34 35 2.877300 GCACTCTCAATGGACACCACAT 60.877 50.000 0.00 0.00 35.80 3.21
35 36 1.543208 GCACTCTCAATGGACACCACA 60.543 52.381 0.00 0.00 35.80 4.17
36 37 1.160137 GCACTCTCAATGGACACCAC 58.840 55.000 0.00 0.00 35.80 4.16
37 38 0.320683 CGCACTCTCAATGGACACCA 60.321 55.000 0.00 0.00 38.19 4.17
38 39 1.639298 GCGCACTCTCAATGGACACC 61.639 60.000 0.30 0.00 0.00 4.16
39 40 1.639298 GGCGCACTCTCAATGGACAC 61.639 60.000 10.83 0.00 0.00 3.67
40 41 1.375908 GGCGCACTCTCAATGGACA 60.376 57.895 10.83 0.00 0.00 4.02
41 42 2.456119 CGGCGCACTCTCAATGGAC 61.456 63.158 10.83 0.00 0.00 4.02
42 43 2.125552 CGGCGCACTCTCAATGGA 60.126 61.111 10.83 0.00 0.00 3.41
43 44 3.197790 CCGGCGCACTCTCAATGG 61.198 66.667 10.83 0.00 0.00 3.16
44 45 2.125552 TCCGGCGCACTCTCAATG 60.126 61.111 10.83 0.00 0.00 2.82
45 46 2.125512 GTCCGGCGCACTCTCAAT 60.126 61.111 10.83 0.00 0.00 2.57
46 47 4.373116 GGTCCGGCGCACTCTCAA 62.373 66.667 10.83 0.00 0.00 3.02
55 56 4.429212 TCACACATCGGTCCGGCG 62.429 66.667 12.29 0.00 0.00 6.46
56 57 2.813908 GTCACACATCGGTCCGGC 60.814 66.667 12.29 0.00 0.00 6.13
57 58 2.125673 GGTCACACATCGGTCCGG 60.126 66.667 12.29 0.00 0.00 5.14
58 59 2.125673 GGGTCACACATCGGTCCG 60.126 66.667 4.39 4.39 0.00 4.79
59 60 1.079127 CTGGGTCACACATCGGTCC 60.079 63.158 0.00 0.00 0.00 4.46
60 61 0.389948 GACTGGGTCACACATCGGTC 60.390 60.000 0.00 0.00 32.09 4.79
61 62 1.671742 GACTGGGTCACACATCGGT 59.328 57.895 0.00 0.00 32.09 4.69
62 63 1.079127 GGACTGGGTCACACATCGG 60.079 63.158 0.14 0.00 33.68 4.18
63 64 1.079127 GGGACTGGGTCACACATCG 60.079 63.158 0.14 0.00 35.79 3.84
64 65 1.079127 CGGGACTGGGTCACACATC 60.079 63.158 0.89 0.00 35.39 3.06
65 66 2.592993 CCGGGACTGGGTCACACAT 61.593 63.158 0.00 0.00 35.39 3.21
66 67 3.238497 CCGGGACTGGGTCACACA 61.238 66.667 0.00 0.00 35.39 3.72
67 68 4.699522 GCCGGGACTGGGTCACAC 62.700 72.222 2.18 0.00 35.39 3.82
69 70 3.268103 AATGCCGGGACTGGGTCAC 62.268 63.158 2.18 0.00 33.68 3.67
70 71 2.933287 AATGCCGGGACTGGGTCA 60.933 61.111 2.18 0.00 33.68 4.02
71 72 2.438434 CAATGCCGGGACTGGGTC 60.438 66.667 2.18 0.00 0.00 4.46
72 73 3.256960 ACAATGCCGGGACTGGGT 61.257 61.111 9.81 0.00 0.00 4.51
73 74 2.751436 CACAATGCCGGGACTGGG 60.751 66.667 9.81 0.00 0.00 4.45
74 75 2.751436 CCACAATGCCGGGACTGG 60.751 66.667 9.81 5.55 0.00 4.00
75 76 3.443045 GCCACAATGCCGGGACTG 61.443 66.667 1.71 1.71 0.00 3.51
76 77 3.210012 AAGCCACAATGCCGGGACT 62.210 57.895 2.18 0.00 0.00 3.85
77 78 2.676471 AAGCCACAATGCCGGGAC 60.676 61.111 2.18 0.00 0.00 4.46
78 79 2.676121 CAAGCCACAATGCCGGGA 60.676 61.111 2.18 0.00 0.00 5.14
79 80 3.762247 CCAAGCCACAATGCCGGG 61.762 66.667 2.18 0.00 0.00 5.73
80 81 2.053865 ATCCAAGCCACAATGCCGG 61.054 57.895 0.00 0.00 0.00 6.13
81 82 1.140161 CATCCAAGCCACAATGCCG 59.860 57.895 0.00 0.00 0.00 5.69
82 83 1.518774 CCATCCAAGCCACAATGCC 59.481 57.895 0.00 0.00 0.00 4.40
83 84 1.518774 CCCATCCAAGCCACAATGC 59.481 57.895 0.00 0.00 0.00 3.56
84 85 0.615544 ACCCCATCCAAGCCACAATG 60.616 55.000 0.00 0.00 0.00 2.82
85 86 1.006813 TACCCCATCCAAGCCACAAT 58.993 50.000 0.00 0.00 0.00 2.71
86 87 0.039035 GTACCCCATCCAAGCCACAA 59.961 55.000 0.00 0.00 0.00 3.33
87 88 1.688811 GTACCCCATCCAAGCCACA 59.311 57.895 0.00 0.00 0.00 4.17
88 89 1.076995 GGTACCCCATCCAAGCCAC 60.077 63.158 0.00 0.00 0.00 5.01
89 90 1.230149 AGGTACCCCATCCAAGCCA 60.230 57.895 8.74 0.00 0.00 4.75
90 91 1.227383 CAGGTACCCCATCCAAGCC 59.773 63.158 8.74 0.00 0.00 4.35
91 92 1.227383 CCAGGTACCCCATCCAAGC 59.773 63.158 8.74 0.00 0.00 4.01
92 93 1.227383 GCCAGGTACCCCATCCAAG 59.773 63.158 8.74 0.00 0.00 3.61
93 94 2.313427 GGCCAGGTACCCCATCCAA 61.313 63.158 8.74 0.00 0.00 3.53
94 95 2.694616 GGCCAGGTACCCCATCCA 60.695 66.667 8.74 0.00 0.00 3.41
95 96 0.696485 TAAGGCCAGGTACCCCATCC 60.696 60.000 8.74 5.13 0.00 3.51
96 97 0.765510 CTAAGGCCAGGTACCCCATC 59.234 60.000 8.74 0.00 0.00 3.51
97 98 0.345502 TCTAAGGCCAGGTACCCCAT 59.654 55.000 8.74 0.00 0.00 4.00
98 99 0.345502 ATCTAAGGCCAGGTACCCCA 59.654 55.000 8.74 0.00 0.00 4.96
99 100 0.765510 CATCTAAGGCCAGGTACCCC 59.234 60.000 8.74 2.47 0.00 4.95
100 101 1.508256 ACATCTAAGGCCAGGTACCC 58.492 55.000 8.74 0.00 0.00 3.69
101 102 3.071167 CCTAACATCTAAGGCCAGGTACC 59.929 52.174 5.01 2.73 0.00 3.34
102 103 3.965347 TCCTAACATCTAAGGCCAGGTAC 59.035 47.826 5.01 0.00 32.55 3.34
103 104 4.274794 TCCTAACATCTAAGGCCAGGTA 57.725 45.455 5.01 0.00 32.55 3.08
104 105 3.130734 TCCTAACATCTAAGGCCAGGT 57.869 47.619 5.01 0.00 32.55 4.00
105 106 4.713792 AATCCTAACATCTAAGGCCAGG 57.286 45.455 5.01 0.00 32.55 4.45
106 107 4.823989 CCAAATCCTAACATCTAAGGCCAG 59.176 45.833 5.01 0.00 32.55 4.85
107 108 4.229582 ACCAAATCCTAACATCTAAGGCCA 59.770 41.667 5.01 0.00 32.55 5.36
108 109 4.580580 CACCAAATCCTAACATCTAAGGCC 59.419 45.833 0.00 0.00 32.55 5.19
109 110 4.036852 GCACCAAATCCTAACATCTAAGGC 59.963 45.833 0.00 0.00 32.55 4.35
110 111 4.273480 CGCACCAAATCCTAACATCTAAGG 59.727 45.833 0.00 0.00 0.00 2.69
111 112 5.116180 TCGCACCAAATCCTAACATCTAAG 58.884 41.667 0.00 0.00 0.00 2.18
112 113 5.092554 TCGCACCAAATCCTAACATCTAA 57.907 39.130 0.00 0.00 0.00 2.10
113 114 4.746535 TCGCACCAAATCCTAACATCTA 57.253 40.909 0.00 0.00 0.00 1.98
114 115 3.627395 TCGCACCAAATCCTAACATCT 57.373 42.857 0.00 0.00 0.00 2.90
115 116 3.627577 ACATCGCACCAAATCCTAACATC 59.372 43.478 0.00 0.00 0.00 3.06
116 117 3.620488 ACATCGCACCAAATCCTAACAT 58.380 40.909 0.00 0.00 0.00 2.71
117 118 3.006940 GACATCGCACCAAATCCTAACA 58.993 45.455 0.00 0.00 0.00 2.41
118 119 2.354821 GGACATCGCACCAAATCCTAAC 59.645 50.000 0.00 0.00 0.00 2.34
119 120 2.639065 GGACATCGCACCAAATCCTAA 58.361 47.619 0.00 0.00 0.00 2.69
120 121 1.472552 CGGACATCGCACCAAATCCTA 60.473 52.381 0.00 0.00 0.00 2.94
121 122 0.744414 CGGACATCGCACCAAATCCT 60.744 55.000 0.00 0.00 0.00 3.24
122 123 1.024579 ACGGACATCGCACCAAATCC 61.025 55.000 0.00 0.00 43.89 3.01
123 124 0.802494 AACGGACATCGCACCAAATC 59.198 50.000 0.00 0.00 43.89 2.17
124 125 1.068610 CAAACGGACATCGCACCAAAT 60.069 47.619 0.00 0.00 43.89 2.32
125 126 0.309302 CAAACGGACATCGCACCAAA 59.691 50.000 0.00 0.00 43.89 3.28
126 127 1.511318 CCAAACGGACATCGCACCAA 61.511 55.000 0.00 0.00 43.89 3.67
127 128 1.963855 CCAAACGGACATCGCACCA 60.964 57.895 0.00 0.00 43.89 4.17
128 129 0.671163 TACCAAACGGACATCGCACC 60.671 55.000 0.00 0.00 43.89 5.01
129 130 1.365699 ATACCAAACGGACATCGCAC 58.634 50.000 0.00 0.00 43.89 5.34
130 131 2.004017 GAATACCAAACGGACATCGCA 58.996 47.619 0.00 0.00 43.89 5.10
131 132 1.005347 CGAATACCAAACGGACATCGC 60.005 52.381 0.00 0.00 43.89 4.58
132 133 2.990774 CGAATACCAAACGGACATCG 57.009 50.000 0.00 0.00 45.88 3.84
139 140 0.458889 TCCGAGCCGAATACCAAACG 60.459 55.000 0.00 0.00 0.00 3.60
140 141 1.004595 GTCCGAGCCGAATACCAAAC 58.995 55.000 0.00 0.00 0.00 2.93
141 142 0.609151 TGTCCGAGCCGAATACCAAA 59.391 50.000 0.00 0.00 0.00 3.28
142 143 0.828022 ATGTCCGAGCCGAATACCAA 59.172 50.000 0.00 0.00 0.00 3.67
143 144 0.828022 AATGTCCGAGCCGAATACCA 59.172 50.000 0.00 0.00 0.00 3.25
144 145 1.499049 GAATGTCCGAGCCGAATACC 58.501 55.000 0.00 0.00 0.00 2.73
145 146 1.129326 CGAATGTCCGAGCCGAATAC 58.871 55.000 0.00 0.00 0.00 1.89
146 147 0.031585 CCGAATGTCCGAGCCGAATA 59.968 55.000 0.00 0.00 0.00 1.75
147 148 1.227263 CCGAATGTCCGAGCCGAAT 60.227 57.895 0.00 0.00 0.00 3.34
148 149 2.183300 CCGAATGTCCGAGCCGAA 59.817 61.111 0.00 0.00 0.00 4.30
149 150 4.508128 GCCGAATGTCCGAGCCGA 62.508 66.667 0.00 0.00 0.00 5.54
150 151 4.812476 TGCCGAATGTCCGAGCCG 62.812 66.667 0.00 0.00 0.00 5.52
151 152 2.203070 ATGCCGAATGTCCGAGCC 60.203 61.111 0.00 0.00 0.00 4.70
152 153 2.247437 GGATGCCGAATGTCCGAGC 61.247 63.158 0.00 0.00 0.00 5.03
153 154 1.595382 GGGATGCCGAATGTCCGAG 60.595 63.158 0.00 0.00 32.71 4.63
154 155 1.622607 AAGGGATGCCGAATGTCCGA 61.623 55.000 0.00 0.00 32.71 4.55
155 156 0.748005 AAAGGGATGCCGAATGTCCG 60.748 55.000 0.00 0.00 32.71 4.79
156 157 1.025041 GAAAGGGATGCCGAATGTCC 58.975 55.000 0.00 0.00 0.00 4.02
157 158 1.750193 TGAAAGGGATGCCGAATGTC 58.250 50.000 0.00 0.00 0.00 3.06
158 159 2.442236 ATGAAAGGGATGCCGAATGT 57.558 45.000 0.00 0.00 0.00 2.71
159 160 4.863491 CTTAATGAAAGGGATGCCGAATG 58.137 43.478 0.00 0.00 0.00 2.67
171 172 6.468543 GCTACTCCTATCCCCTTAATGAAAG 58.531 44.000 0.00 0.00 34.73 2.62
172 173 5.011738 CGCTACTCCTATCCCCTTAATGAAA 59.988 44.000 0.00 0.00 0.00 2.69
173 174 4.527038 CGCTACTCCTATCCCCTTAATGAA 59.473 45.833 0.00 0.00 0.00 2.57
174 175 4.087182 CGCTACTCCTATCCCCTTAATGA 58.913 47.826 0.00 0.00 0.00 2.57
175 176 4.082136 GTCGCTACTCCTATCCCCTTAATG 60.082 50.000 0.00 0.00 0.00 1.90
176 177 4.087907 GTCGCTACTCCTATCCCCTTAAT 58.912 47.826 0.00 0.00 0.00 1.40
177 178 3.117398 TGTCGCTACTCCTATCCCCTTAA 60.117 47.826 0.00 0.00 0.00 1.85
178 179 2.444388 TGTCGCTACTCCTATCCCCTTA 59.556 50.000 0.00 0.00 0.00 2.69
179 180 1.217183 TGTCGCTACTCCTATCCCCTT 59.783 52.381 0.00 0.00 0.00 3.95
180 181 0.851469 TGTCGCTACTCCTATCCCCT 59.149 55.000 0.00 0.00 0.00 4.79
181 182 1.249407 CTGTCGCTACTCCTATCCCC 58.751 60.000 0.00 0.00 0.00 4.81
182 183 1.249407 CCTGTCGCTACTCCTATCCC 58.751 60.000 0.00 0.00 0.00 3.85
183 184 1.609555 CACCTGTCGCTACTCCTATCC 59.390 57.143 0.00 0.00 0.00 2.59
184 185 2.299521 ACACCTGTCGCTACTCCTATC 58.700 52.381 0.00 0.00 0.00 2.08
185 186 2.427453 CAACACCTGTCGCTACTCCTAT 59.573 50.000 0.00 0.00 0.00 2.57
186 187 1.816835 CAACACCTGTCGCTACTCCTA 59.183 52.381 0.00 0.00 0.00 2.94
187 188 0.603569 CAACACCTGTCGCTACTCCT 59.396 55.000 0.00 0.00 0.00 3.69
188 189 1.014564 GCAACACCTGTCGCTACTCC 61.015 60.000 0.00 0.00 0.00 3.85
189 190 1.014564 GGCAACACCTGTCGCTACTC 61.015 60.000 0.00 0.00 34.51 2.59
190 191 1.004918 GGCAACACCTGTCGCTACT 60.005 57.895 0.00 0.00 34.51 2.57
191 192 1.301401 TGGCAACACCTGTCGCTAC 60.301 57.895 0.00 0.00 46.17 3.58
192 193 3.143338 TGGCAACACCTGTCGCTA 58.857 55.556 0.00 0.00 46.17 4.26
207 208 0.622665 ACCTGAAGCCTCCATCTTGG 59.377 55.000 0.00 0.00 39.43 3.61
208 209 2.503895 AACCTGAAGCCTCCATCTTG 57.496 50.000 0.00 0.00 0.00 3.02
209 210 3.589288 AGTAAACCTGAAGCCTCCATCTT 59.411 43.478 0.00 0.00 0.00 2.40
210 211 3.054802 CAGTAAACCTGAAGCCTCCATCT 60.055 47.826 0.00 0.00 44.49 2.90
211 212 3.274288 CAGTAAACCTGAAGCCTCCATC 58.726 50.000 0.00 0.00 44.49 3.51
212 213 3.356529 CAGTAAACCTGAAGCCTCCAT 57.643 47.619 0.00 0.00 44.49 3.41
213 214 2.859165 CAGTAAACCTGAAGCCTCCA 57.141 50.000 0.00 0.00 44.49 3.86
230 231 9.530633 GGACCTTACAAAGTAATAGTACATCAG 57.469 37.037 2.81 0.00 32.12 2.90
231 232 9.263446 AGGACCTTACAAAGTAATAGTACATCA 57.737 33.333 2.81 0.00 32.12 3.07
233 234 9.886132 CAAGGACCTTACAAAGTAATAGTACAT 57.114 33.333 6.38 0.00 32.12 2.29
234 235 8.873144 ACAAGGACCTTACAAAGTAATAGTACA 58.127 33.333 6.38 0.00 32.12 2.90
235 236 9.148104 CACAAGGACCTTACAAAGTAATAGTAC 57.852 37.037 6.38 0.00 0.00 2.73
236 237 9.092338 TCACAAGGACCTTACAAAGTAATAGTA 57.908 33.333 6.38 0.00 0.00 1.82
237 238 7.970102 TCACAAGGACCTTACAAAGTAATAGT 58.030 34.615 6.38 0.00 0.00 2.12
238 239 8.842358 TTCACAAGGACCTTACAAAGTAATAG 57.158 34.615 6.38 0.00 0.00 1.73
240 241 9.802039 TTATTCACAAGGACCTTACAAAGTAAT 57.198 29.630 6.38 3.48 0.00 1.89
241 242 9.802039 ATTATTCACAAGGACCTTACAAAGTAA 57.198 29.630 6.38 3.47 0.00 2.24
242 243 9.802039 AATTATTCACAAGGACCTTACAAAGTA 57.198 29.630 6.38 0.00 0.00 2.24
243 244 8.706322 AATTATTCACAAGGACCTTACAAAGT 57.294 30.769 6.38 0.00 0.00 2.66
260 261 9.190858 GCATGCGGTCATTTTATTAATTATTCA 57.809 29.630 0.00 0.00 0.00 2.57
261 262 9.190858 TGCATGCGGTCATTTTATTAATTATTC 57.809 29.630 14.09 0.00 0.00 1.75
262 263 9.709495 ATGCATGCGGTCATTTTATTAATTATT 57.291 25.926 14.09 0.00 0.00 1.40
263 264 9.357652 GATGCATGCGGTCATTTTATTAATTAT 57.642 29.630 14.09 0.00 0.00 1.28
264 265 7.536964 CGATGCATGCGGTCATTTTATTAATTA 59.463 33.333 14.09 0.00 0.00 1.40
265 266 6.363088 CGATGCATGCGGTCATTTTATTAATT 59.637 34.615 14.09 0.00 0.00 1.40
266 267 5.858049 CGATGCATGCGGTCATTTTATTAAT 59.142 36.000 14.09 0.00 0.00 1.40
267 268 5.211454 CGATGCATGCGGTCATTTTATTAA 58.789 37.500 14.09 0.00 0.00 1.40
268 269 4.782156 CGATGCATGCGGTCATTTTATTA 58.218 39.130 14.09 0.00 0.00 0.98
269 270 3.631144 CGATGCATGCGGTCATTTTATT 58.369 40.909 14.09 0.00 0.00 1.40
270 271 2.605338 GCGATGCATGCGGTCATTTTAT 60.605 45.455 14.09 0.00 0.00 1.40
271 272 1.268488 GCGATGCATGCGGTCATTTTA 60.268 47.619 14.09 0.00 0.00 1.52
272 273 0.526096 GCGATGCATGCGGTCATTTT 60.526 50.000 14.09 0.00 0.00 1.82
273 274 1.064621 GCGATGCATGCGGTCATTT 59.935 52.632 14.09 0.00 0.00 2.32
274 275 2.717485 GCGATGCATGCGGTCATT 59.283 55.556 14.09 0.00 0.00 2.57
275 276 3.282157 GGCGATGCATGCGGTCAT 61.282 61.111 14.09 0.00 0.00 3.06
280 281 2.976350 ATCTGGGCGATGCATGCG 60.976 61.111 14.09 9.10 0.00 4.73
281 282 2.643272 CATCTGGGCGATGCATGC 59.357 61.111 11.82 11.82 42.75 4.06
293 294 1.183030 TATACCCCCGACCGCATCTG 61.183 60.000 0.00 0.00 0.00 2.90
294 295 0.252103 ATATACCCCCGACCGCATCT 60.252 55.000 0.00 0.00 0.00 2.90
295 296 0.175073 GATATACCCCCGACCGCATC 59.825 60.000 0.00 0.00 0.00 3.91
296 297 1.262640 GGATATACCCCCGACCGCAT 61.263 60.000 0.00 0.00 0.00 4.73
297 298 1.909781 GGATATACCCCCGACCGCA 60.910 63.158 0.00 0.00 0.00 5.69
298 299 1.602327 GAGGATATACCCCCGACCGC 61.602 65.000 0.00 0.00 40.05 5.68
299 300 0.969409 GGAGGATATACCCCCGACCG 60.969 65.000 0.00 0.00 40.05 4.79
300 301 0.412640 AGGAGGATATACCCCCGACC 59.587 60.000 0.00 0.00 40.05 4.79
301 302 2.322339 AAGGAGGATATACCCCCGAC 57.678 55.000 0.00 0.00 40.05 4.79
302 303 3.116473 AGAAAAGGAGGATATACCCCCGA 60.116 47.826 0.00 0.00 40.05 5.14
303 304 3.248888 AGAAAAGGAGGATATACCCCCG 58.751 50.000 0.00 0.00 40.05 5.73
304 305 6.775234 TTTAGAAAAGGAGGATATACCCCC 57.225 41.667 0.00 0.00 40.05 5.40
328 329 9.546428 CCAATAGAAAAACAGAAGGAACATTTT 57.454 29.630 0.00 0.00 0.00 1.82
329 330 7.657354 GCCAATAGAAAAACAGAAGGAACATTT 59.343 33.333 0.00 0.00 0.00 2.32
330 331 7.015584 AGCCAATAGAAAAACAGAAGGAACATT 59.984 33.333 0.00 0.00 0.00 2.71
331 332 6.494835 AGCCAATAGAAAAACAGAAGGAACAT 59.505 34.615 0.00 0.00 0.00 2.71
332 333 5.833131 AGCCAATAGAAAAACAGAAGGAACA 59.167 36.000 0.00 0.00 0.00 3.18
333 334 6.016276 TGAGCCAATAGAAAAACAGAAGGAAC 60.016 38.462 0.00 0.00 0.00 3.62
334 335 6.068010 TGAGCCAATAGAAAAACAGAAGGAA 58.932 36.000 0.00 0.00 0.00 3.36
335 336 5.630121 TGAGCCAATAGAAAAACAGAAGGA 58.370 37.500 0.00 0.00 0.00 3.36
336 337 5.964958 TGAGCCAATAGAAAAACAGAAGG 57.035 39.130 0.00 0.00 0.00 3.46
337 338 7.206981 TCTTGAGCCAATAGAAAAACAGAAG 57.793 36.000 0.00 0.00 0.00 2.85
338 339 7.596494 CATCTTGAGCCAATAGAAAAACAGAA 58.404 34.615 0.00 0.00 0.00 3.02
339 340 6.349611 GCATCTTGAGCCAATAGAAAAACAGA 60.350 38.462 0.00 0.00 0.00 3.41
340 341 5.803967 GCATCTTGAGCCAATAGAAAAACAG 59.196 40.000 0.00 0.00 0.00 3.16
341 342 5.477984 AGCATCTTGAGCCAATAGAAAAACA 59.522 36.000 0.00 0.00 0.00 2.83
342 343 5.958955 AGCATCTTGAGCCAATAGAAAAAC 58.041 37.500 0.00 0.00 0.00 2.43
343 344 6.886459 AGTAGCATCTTGAGCCAATAGAAAAA 59.114 34.615 0.00 0.00 0.00 1.94
344 345 6.418101 AGTAGCATCTTGAGCCAATAGAAAA 58.582 36.000 0.00 0.00 0.00 2.29
345 346 5.994250 AGTAGCATCTTGAGCCAATAGAAA 58.006 37.500 0.00 0.00 0.00 2.52
346 347 5.620738 AGTAGCATCTTGAGCCAATAGAA 57.379 39.130 0.00 0.00 0.00 2.10
347 348 5.835819 ACTAGTAGCATCTTGAGCCAATAGA 59.164 40.000 0.00 0.00 0.00 1.98
348 349 6.095432 ACTAGTAGCATCTTGAGCCAATAG 57.905 41.667 0.00 0.00 0.00 1.73
349 350 7.597288 TTACTAGTAGCATCTTGAGCCAATA 57.403 36.000 2.23 0.00 0.00 1.90
350 351 6.485830 TTACTAGTAGCATCTTGAGCCAAT 57.514 37.500 2.23 0.00 0.00 3.16
351 352 5.932619 TTACTAGTAGCATCTTGAGCCAA 57.067 39.130 2.23 0.00 0.00 4.52
352 353 6.485830 AATTACTAGTAGCATCTTGAGCCA 57.514 37.500 2.23 0.00 0.00 4.75
353 354 9.495572 AAATAATTACTAGTAGCATCTTGAGCC 57.504 33.333 2.23 0.00 0.00 4.70
378 379 9.944663 GTAGTGATAAAACTGACATGTGAAAAA 57.055 29.630 1.15 0.00 0.00 1.94
379 380 8.564574 GGTAGTGATAAAACTGACATGTGAAAA 58.435 33.333 1.15 0.00 0.00 2.29
380 381 7.936847 AGGTAGTGATAAAACTGACATGTGAAA 59.063 33.333 1.15 0.00 0.00 2.69
381 382 7.387673 CAGGTAGTGATAAAACTGACATGTGAA 59.612 37.037 1.15 0.00 0.00 3.18
382 383 6.873605 CAGGTAGTGATAAAACTGACATGTGA 59.126 38.462 1.15 0.00 0.00 3.58
383 384 6.873605 TCAGGTAGTGATAAAACTGACATGTG 59.126 38.462 1.15 0.00 30.75 3.21
384 385 7.004555 TCAGGTAGTGATAAAACTGACATGT 57.995 36.000 0.00 0.00 30.75 3.21
385 386 8.498054 AATCAGGTAGTGATAAAACTGACATG 57.502 34.615 0.00 0.00 45.89 3.21
386 387 8.950210 CAAATCAGGTAGTGATAAAACTGACAT 58.050 33.333 0.00 0.00 45.89 3.06
387 388 8.154203 TCAAATCAGGTAGTGATAAAACTGACA 58.846 33.333 0.00 0.00 45.89 3.58
388 389 8.547967 TCAAATCAGGTAGTGATAAAACTGAC 57.452 34.615 0.00 0.00 45.89 3.51
389 390 9.383519 GATCAAATCAGGTAGTGATAAAACTGA 57.616 33.333 0.00 0.00 45.89 3.41
390 391 9.166173 TGATCAAATCAGGTAGTGATAAAACTG 57.834 33.333 0.00 0.00 45.89 3.16
391 392 9.739276 TTGATCAAATCAGGTAGTGATAAAACT 57.261 29.630 5.45 0.00 45.89 2.66
392 393 9.994432 CTTGATCAAATCAGGTAGTGATAAAAC 57.006 33.333 9.88 0.00 45.89 2.43
393 394 9.177608 CCTTGATCAAATCAGGTAGTGATAAAA 57.822 33.333 9.88 0.00 45.89 1.52
394 395 8.548025 TCCTTGATCAAATCAGGTAGTGATAAA 58.452 33.333 9.88 0.00 45.89 1.40
395 396 8.089625 TCCTTGATCAAATCAGGTAGTGATAA 57.910 34.615 9.88 0.00 45.89 1.75
396 397 7.675161 TCCTTGATCAAATCAGGTAGTGATA 57.325 36.000 9.88 0.00 45.89 2.15
398 399 6.351711 CATCCTTGATCAAATCAGGTAGTGA 58.648 40.000 9.88 0.00 40.94 3.41
399 400 5.530171 CCATCCTTGATCAAATCAGGTAGTG 59.470 44.000 9.88 7.91 40.94 2.74
400 401 5.688807 CCATCCTTGATCAAATCAGGTAGT 58.311 41.667 9.88 0.00 40.94 2.73
401 402 4.518211 GCCATCCTTGATCAAATCAGGTAG 59.482 45.833 9.88 4.52 40.94 3.18
402 403 4.079844 TGCCATCCTTGATCAAATCAGGTA 60.080 41.667 9.88 6.49 40.94 3.08
403 404 3.294214 GCCATCCTTGATCAAATCAGGT 58.706 45.455 9.88 0.00 40.94 4.00
404 405 3.293337 TGCCATCCTTGATCAAATCAGG 58.707 45.455 9.88 7.22 40.94 3.86
405 406 6.644248 TTATGCCATCCTTGATCAAATCAG 57.356 37.500 9.88 0.00 40.94 2.90
406 407 6.608405 AGTTTATGCCATCCTTGATCAAATCA 59.392 34.615 9.88 2.15 37.55 2.57
407 408 7.014038 AGAGTTTATGCCATCCTTGATCAAATC 59.986 37.037 9.88 0.00 0.00 2.17
408 409 6.837568 AGAGTTTATGCCATCCTTGATCAAAT 59.162 34.615 9.88 0.00 0.00 2.32
409 410 6.189859 AGAGTTTATGCCATCCTTGATCAAA 58.810 36.000 9.88 0.00 0.00 2.69
410 411 5.759059 AGAGTTTATGCCATCCTTGATCAA 58.241 37.500 8.12 8.12 0.00 2.57
411 412 5.378230 AGAGTTTATGCCATCCTTGATCA 57.622 39.130 0.00 0.00 0.00 2.92
412 413 5.824624 TCAAGAGTTTATGCCATCCTTGATC 59.175 40.000 0.00 0.00 35.18 2.92
413 414 5.759059 TCAAGAGTTTATGCCATCCTTGAT 58.241 37.500 0.00 0.00 35.18 2.57
414 415 5.178096 TCAAGAGTTTATGCCATCCTTGA 57.822 39.130 0.00 0.00 36.99 3.02
415 416 5.902613 TTCAAGAGTTTATGCCATCCTTG 57.097 39.130 0.00 0.00 0.00 3.61
416 417 6.628844 GCATTTCAAGAGTTTATGCCATCCTT 60.629 38.462 0.00 0.00 36.48 3.36
417 418 5.163478 GCATTTCAAGAGTTTATGCCATCCT 60.163 40.000 0.00 0.00 36.48 3.24
418 419 5.045872 GCATTTCAAGAGTTTATGCCATCC 58.954 41.667 0.00 0.00 36.48 3.51
419 420 5.653507 TGCATTTCAAGAGTTTATGCCATC 58.346 37.500 0.00 0.00 40.56 3.51
420 421 5.394883 CCTGCATTTCAAGAGTTTATGCCAT 60.395 40.000 0.00 0.00 40.56 4.40
421 422 4.082081 CCTGCATTTCAAGAGTTTATGCCA 60.082 41.667 0.00 0.00 40.56 4.92
422 423 4.427312 CCTGCATTTCAAGAGTTTATGCC 58.573 43.478 0.00 0.00 40.56 4.40
423 424 4.427312 CCCTGCATTTCAAGAGTTTATGC 58.573 43.478 0.00 0.00 41.39 3.14
424 425 4.427312 GCCCTGCATTTCAAGAGTTTATG 58.573 43.478 0.00 0.00 0.00 1.90
425 426 3.448660 GGCCCTGCATTTCAAGAGTTTAT 59.551 43.478 0.00 0.00 0.00 1.40
426 427 2.825532 GGCCCTGCATTTCAAGAGTTTA 59.174 45.455 0.00 0.00 0.00 2.01
427 428 1.620323 GGCCCTGCATTTCAAGAGTTT 59.380 47.619 0.00 0.00 0.00 2.66
428 429 1.260544 GGCCCTGCATTTCAAGAGTT 58.739 50.000 0.00 0.00 0.00 3.01
429 430 0.112995 TGGCCCTGCATTTCAAGAGT 59.887 50.000 0.00 0.00 0.00 3.24
430 431 1.407979 GATGGCCCTGCATTTCAAGAG 59.592 52.381 0.00 0.00 0.00 2.85
431 432 1.477553 GATGGCCCTGCATTTCAAGA 58.522 50.000 0.00 0.00 0.00 3.02
432 433 0.462789 GGATGGCCCTGCATTTCAAG 59.537 55.000 0.00 0.00 0.00 3.02
433 434 0.041535 AGGATGGCCCTGCATTTCAA 59.958 50.000 0.00 0.00 45.61 2.69
434 435 1.699137 AGGATGGCCCTGCATTTCA 59.301 52.632 0.00 0.00 45.61 2.69
435 436 4.692930 AGGATGGCCCTGCATTTC 57.307 55.556 0.00 0.00 45.61 2.17
443 444 0.106669 GTGAACCCTAAGGATGGCCC 60.107 60.000 0.00 0.00 36.73 5.80
444 445 0.106669 GGTGAACCCTAAGGATGGCC 60.107 60.000 0.00 0.00 36.73 5.36
445 446 0.623723 TGGTGAACCCTAAGGATGGC 59.376 55.000 0.00 0.00 36.73 4.40
446 447 1.406887 CGTGGTGAACCCTAAGGATGG 60.407 57.143 0.00 0.00 36.73 3.51
447 448 2.012051 GCGTGGTGAACCCTAAGGATG 61.012 57.143 0.00 0.00 36.73 3.51
448 449 0.252197 GCGTGGTGAACCCTAAGGAT 59.748 55.000 0.00 0.00 36.73 3.24
449 450 1.675219 GCGTGGTGAACCCTAAGGA 59.325 57.895 0.00 0.00 36.73 3.36
450 451 1.376812 GGCGTGGTGAACCCTAAGG 60.377 63.158 0.00 0.00 40.04 2.69
451 452 0.953960 GTGGCGTGGTGAACCCTAAG 60.954 60.000 0.00 0.00 34.29 2.18
452 453 1.071814 GTGGCGTGGTGAACCCTAA 59.928 57.895 0.00 0.00 34.29 2.69
453 454 2.745037 GTGGCGTGGTGAACCCTA 59.255 61.111 0.00 0.00 34.29 3.53
454 455 4.265056 GGTGGCGTGGTGAACCCT 62.265 66.667 0.00 0.00 34.29 4.34
456 457 4.572571 TGGGTGGCGTGGTGAACC 62.573 66.667 0.00 0.00 0.00 3.62
457 458 2.070654 CTTTGGGTGGCGTGGTGAAC 62.071 60.000 0.00 0.00 0.00 3.18
458 459 1.826054 CTTTGGGTGGCGTGGTGAA 60.826 57.895 0.00 0.00 0.00 3.18
459 460 2.203280 CTTTGGGTGGCGTGGTGA 60.203 61.111 0.00 0.00 0.00 4.02
460 461 3.977244 GCTTTGGGTGGCGTGGTG 61.977 66.667 0.00 0.00 0.00 4.17
461 462 4.514585 TGCTTTGGGTGGCGTGGT 62.515 61.111 0.00 0.00 0.00 4.16
462 463 3.673484 CTGCTTTGGGTGGCGTGG 61.673 66.667 0.00 0.00 0.00 4.94
463 464 3.673484 CCTGCTTTGGGTGGCGTG 61.673 66.667 0.00 0.00 0.00 5.34
464 465 4.974721 CCCTGCTTTGGGTGGCGT 62.975 66.667 2.47 0.00 42.25 5.68
470 471 8.013812 AAATTAATCATTTGACCCTGCTTTGGG 61.014 37.037 8.18 8.18 42.11 4.12
471 472 3.967332 AATCATTTGACCCTGCTTTGG 57.033 42.857 0.00 0.00 0.00 3.28
472 473 7.603404 TGAAATTAATCATTTGACCCTGCTTTG 59.397 33.333 0.00 0.00 35.02 2.77
473 474 7.603784 GTGAAATTAATCATTTGACCCTGCTTT 59.396 33.333 0.00 0.00 33.96 3.51
474 475 7.099120 GTGAAATTAATCATTTGACCCTGCTT 58.901 34.615 0.00 0.00 33.96 3.91
475 476 6.211184 TGTGAAATTAATCATTTGACCCTGCT 59.789 34.615 0.00 0.00 37.99 4.24
476 477 6.397272 TGTGAAATTAATCATTTGACCCTGC 58.603 36.000 0.00 0.00 37.99 4.85
477 478 8.472413 AGATGTGAAATTAATCATTTGACCCTG 58.528 33.333 0.00 0.00 37.99 4.45
478 479 8.599624 AGATGTGAAATTAATCATTTGACCCT 57.400 30.769 0.00 0.00 37.99 4.34
479 480 9.736023 GTAGATGTGAAATTAATCATTTGACCC 57.264 33.333 0.00 0.00 37.99 4.46
490 491 9.677567 GCAAAGTGAAAGTAGATGTGAAATTAA 57.322 29.630 0.00 0.00 0.00 1.40
491 492 8.845227 TGCAAAGTGAAAGTAGATGTGAAATTA 58.155 29.630 0.00 0.00 0.00 1.40
492 493 7.715657 TGCAAAGTGAAAGTAGATGTGAAATT 58.284 30.769 0.00 0.00 0.00 1.82
493 494 7.013655 ACTGCAAAGTGAAAGTAGATGTGAAAT 59.986 33.333 0.00 0.00 0.00 2.17
494 495 6.318648 ACTGCAAAGTGAAAGTAGATGTGAAA 59.681 34.615 0.00 0.00 0.00 2.69
495 496 5.822519 ACTGCAAAGTGAAAGTAGATGTGAA 59.177 36.000 0.00 0.00 0.00 3.18
496 497 5.237127 CACTGCAAAGTGAAAGTAGATGTGA 59.763 40.000 0.00 0.00 42.02 3.58
497 498 5.446709 CACTGCAAAGTGAAAGTAGATGTG 58.553 41.667 0.00 0.00 42.02 3.21
498 499 4.023707 GCACTGCAAAGTGAAAGTAGATGT 60.024 41.667 10.09 0.00 42.02 3.06
499 500 4.214971 AGCACTGCAAAGTGAAAGTAGATG 59.785 41.667 10.09 0.00 42.02 2.90
500 501 4.392940 AGCACTGCAAAGTGAAAGTAGAT 58.607 39.130 10.09 0.00 42.02 1.98
501 502 3.808728 AGCACTGCAAAGTGAAAGTAGA 58.191 40.909 10.09 0.00 42.02 2.59
502 503 5.869753 ATAGCACTGCAAAGTGAAAGTAG 57.130 39.130 10.09 0.00 42.02 2.57
503 504 5.762711 TCAATAGCACTGCAAAGTGAAAGTA 59.237 36.000 10.09 0.00 42.02 2.24
504 505 4.580167 TCAATAGCACTGCAAAGTGAAAGT 59.420 37.500 10.09 0.00 42.02 2.66
505 506 5.112220 TCAATAGCACTGCAAAGTGAAAG 57.888 39.130 10.09 0.00 42.02 2.62
506 507 5.067674 AGTTCAATAGCACTGCAAAGTGAAA 59.932 36.000 16.21 0.00 42.02 2.69
507 508 4.580167 AGTTCAATAGCACTGCAAAGTGAA 59.420 37.500 10.09 12.54 42.02 3.18
508 509 4.136796 AGTTCAATAGCACTGCAAAGTGA 58.863 39.130 10.09 3.29 42.02 3.41
509 510 4.494350 AGTTCAATAGCACTGCAAAGTG 57.506 40.909 3.30 1.82 42.32 3.16
510 511 5.392380 GCATAGTTCAATAGCACTGCAAAGT 60.392 40.000 3.30 0.00 0.00 2.66
511 512 5.032863 GCATAGTTCAATAGCACTGCAAAG 58.967 41.667 3.30 0.00 0.00 2.77
512 513 4.437255 CGCATAGTTCAATAGCACTGCAAA 60.437 41.667 3.30 0.00 0.00 3.68
513 514 3.063861 CGCATAGTTCAATAGCACTGCAA 59.936 43.478 3.30 0.00 0.00 4.08
514 515 2.609002 CGCATAGTTCAATAGCACTGCA 59.391 45.455 3.30 0.00 0.00 4.41
515 516 2.032549 CCGCATAGTTCAATAGCACTGC 60.033 50.000 0.00 0.00 0.00 4.40
516 517 3.198068 ACCGCATAGTTCAATAGCACTG 58.802 45.455 0.00 0.00 0.00 3.66
517 518 3.543680 ACCGCATAGTTCAATAGCACT 57.456 42.857 0.00 0.00 0.00 4.40
518 519 4.588278 GAAACCGCATAGTTCAATAGCAC 58.412 43.478 0.00 0.00 0.00 4.40
519 520 3.308595 CGAAACCGCATAGTTCAATAGCA 59.691 43.478 0.00 0.00 0.00 3.49
520 521 3.861834 CGAAACCGCATAGTTCAATAGC 58.138 45.455 0.00 0.00 0.00 2.97
593 594 8.833493 GTTATGATATTGGTTAGGTGTGGTTAC 58.167 37.037 0.00 0.00 0.00 2.50
631 632 1.296867 GCATATCGTGCGTGTGTGC 60.297 57.895 6.00 6.00 45.23 4.57
683 689 1.414181 GCCTGGCTAGCTAACTCATGA 59.586 52.381 15.72 0.00 0.00 3.07
741 757 3.212685 GAGGGAGATGATTGAGGCTTTG 58.787 50.000 0.00 0.00 0.00 2.77
742 758 2.174424 GGAGGGAGATGATTGAGGCTTT 59.826 50.000 0.00 0.00 0.00 3.51
743 759 1.773653 GGAGGGAGATGATTGAGGCTT 59.226 52.381 0.00 0.00 0.00 4.35
744 760 1.433121 GGAGGGAGATGATTGAGGCT 58.567 55.000 0.00 0.00 0.00 4.58
774 790 4.393155 TCCGCAGCGTGGATTGCT 62.393 61.111 15.05 0.00 45.31 3.91
901 955 3.300853 CGATTCTGTACTTGTGCGTGTAG 59.699 47.826 0.00 0.00 0.00 2.74
905 959 1.068474 GCGATTCTGTACTTGTGCGT 58.932 50.000 0.00 0.00 0.00 5.24
1020 1074 4.033776 GCCAGTAGGTGCAGGGCA 62.034 66.667 0.00 0.00 44.01 5.36
1029 1083 0.107945 GGAGAAGCACTGCCAGTAGG 60.108 60.000 0.00 0.00 38.23 3.18
1341 1398 0.718904 TGATTGTATCGTGCGCACAC 59.281 50.000 37.03 27.83 43.76 3.82
1342 1399 0.718904 GTGATTGTATCGTGCGCACA 59.281 50.000 37.03 24.97 0.00 4.57
1492 1554 2.094854 CCTGCTGTTTCAGATCTTTGCC 60.095 50.000 0.00 0.00 36.19 4.52
1549 1623 3.368190 CTCTCGCAGGGACAGGCTG 62.368 68.421 14.16 14.16 0.00 4.85
1550 1624 3.073735 CTCTCGCAGGGACAGGCT 61.074 66.667 0.00 0.00 0.00 4.58
1551 1625 4.828925 GCTCTCGCAGGGACAGGC 62.829 72.222 0.00 0.00 35.78 4.85
1570 1645 3.197790 CAGCCATTGACCGCTCCG 61.198 66.667 0.00 0.00 31.40 4.63
1588 1663 4.378459 CGGAAATTAAACACTGAGGACAGC 60.378 45.833 0.00 0.00 46.95 4.40
1590 1665 4.963373 TCGGAAATTAAACACTGAGGACA 58.037 39.130 0.00 0.00 0.00 4.02
1591 1666 5.532025 CTCGGAAATTAAACACTGAGGAC 57.468 43.478 0.00 0.00 33.66 3.85
1616 1691 2.172851 ACGCGAAATGACCCTAAACA 57.827 45.000 15.93 0.00 0.00 2.83
1827 1904 5.280654 TCAAAAGACCAACGTAACCTACT 57.719 39.130 0.00 0.00 0.00 2.57
1883 1960 2.509336 CCTTCCAGCCGCACTACG 60.509 66.667 0.00 0.00 43.15 3.51
2036 2113 4.457466 TGTTCCCTAAAAACACAGAGTCC 58.543 43.478 0.00 0.00 31.90 3.85
2037 2114 5.365619 TCTGTTCCCTAAAAACACAGAGTC 58.634 41.667 0.00 0.00 39.12 3.36
2038 2115 5.367945 TCTGTTCCCTAAAAACACAGAGT 57.632 39.130 0.00 0.00 39.12 3.24
2041 2118 4.218417 CCCATCTGTTCCCTAAAAACACAG 59.782 45.833 0.00 0.00 36.91 3.66
2043 2120 3.056821 GCCCATCTGTTCCCTAAAAACAC 60.057 47.826 0.00 0.00 33.30 3.32
2044 2121 3.161866 GCCCATCTGTTCCCTAAAAACA 58.838 45.455 0.00 0.00 35.44 2.83
2045 2122 2.163613 CGCCCATCTGTTCCCTAAAAAC 59.836 50.000 0.00 0.00 0.00 2.43
2051 2128 1.201429 AGAACGCCCATCTGTTCCCT 61.201 55.000 1.78 0.00 44.29 4.20
2052 2129 1.026718 CAGAACGCCCATCTGTTCCC 61.027 60.000 1.78 0.00 44.29 3.97
2093 2171 2.992124 TGTCAAAAGTGGAACGGAGA 57.008 45.000 0.00 0.00 45.86 3.71
2094 2172 5.880054 ATTATGTCAAAAGTGGAACGGAG 57.120 39.130 0.00 0.00 45.86 4.63
2097 2175 7.433719 TGTTTCAATTATGTCAAAAGTGGAACG 59.566 33.333 3.79 0.00 41.21 3.95
2098 2176 8.539674 GTGTTTCAATTATGTCAAAAGTGGAAC 58.460 33.333 1.55 1.55 39.63 3.62
2099 2177 8.253810 TGTGTTTCAATTATGTCAAAAGTGGAA 58.746 29.630 0.00 0.00 0.00 3.53
2101 2179 8.327429 GTTGTGTTTCAATTATGTCAAAAGTGG 58.673 33.333 0.00 0.00 38.38 4.00
2102 2180 8.867935 TGTTGTGTTTCAATTATGTCAAAAGTG 58.132 29.630 0.00 0.00 38.38 3.16
2116 2199 3.253677 ACGTTGGAACTGTTGTGTTTCAA 59.746 39.130 0.00 0.00 41.53 2.69
2117 2200 2.814919 ACGTTGGAACTGTTGTGTTTCA 59.185 40.909 0.00 0.00 33.97 2.69
2124 2207 4.092816 GTGTTTGTACGTTGGAACTGTTG 58.907 43.478 0.00 0.00 0.00 3.33
2136 2219 3.254060 CCATCCTCTGAGTGTTTGTACG 58.746 50.000 3.66 0.00 0.00 3.67
2137 2220 3.260884 TCCCATCCTCTGAGTGTTTGTAC 59.739 47.826 3.66 0.00 0.00 2.90
2144 2227 3.517100 TCTCTTTTCCCATCCTCTGAGTG 59.483 47.826 3.66 0.00 0.00 3.51
2146 2229 4.833478 TTCTCTTTTCCCATCCTCTGAG 57.167 45.455 0.00 0.00 0.00 3.35
2152 2235 3.081804 TCGCTTTTCTCTTTTCCCATCC 58.918 45.455 0.00 0.00 0.00 3.51
2190 2273 1.876799 TGGGCGTGTACAGTGAATTTG 59.123 47.619 0.00 0.00 0.00 2.32
2195 2278 0.394938 AATGTGGGCGTGTACAGTGA 59.605 50.000 0.00 0.00 0.00 3.41
2199 2282 1.969064 GCCAATGTGGGCGTGTACA 60.969 57.895 0.00 0.00 45.40 2.90
2215 2298 2.112815 GTCCCATGGTAAGCGTGCC 61.113 63.158 11.73 0.00 0.00 5.01
2220 2303 1.471287 GGTTTTCGTCCCATGGTAAGC 59.529 52.381 11.73 1.29 0.00 3.09
2231 2314 3.955771 TTGTGCTAACAGGTTTTCGTC 57.044 42.857 0.00 0.00 37.67 4.20
2232 2315 4.082679 TGTTTTGTGCTAACAGGTTTTCGT 60.083 37.500 0.00 0.00 37.67 3.85
2233 2316 4.416620 TGTTTTGTGCTAACAGGTTTTCG 58.583 39.130 0.00 0.00 37.67 3.46
2242 2325 6.713792 TTTTTGGACTTGTTTTGTGCTAAC 57.286 33.333 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.