AutoCloner

Multiple sequence alignment - TraesCS2D01G368000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G368000	chr2D	100.000	4049	0	0	1	4049	472469426	472473474	0.000000e+00	7478.0
1	TraesCS2D01G368000	chr2D	76.851	1931	389	38	1073	2989	472468946	472467060	0.000000e+00	1037.0
2	TraesCS2D01G368000	chr2A	94.967	3060	95	25	1017	4049	613991441	613994468	0.000000e+00	4743.0
3	TraesCS2D01G368000	chr2A	77.167	1927	362	51	1087	2989	613989728	613987856	0.000000e+00	1050.0
4	TraesCS2D01G368000	chr2A	80.793	958	70	49	26	949	613990545	613991422	0.000000e+00	645.0
5	TraesCS2D01G368000	chr2B	93.392	3178	86	43	903	4049	551637706	551640790	0.000000e+00	4591.0
6	TraesCS2D01G368000	chr2B	76.808	1936	385	45	1072	2989	551635258	551633369	0.000000e+00	1029.0
7	TraesCS2D01G368000	chr2B	89.982	549	24	10	1	519	551635710	551636257	0.000000e+00	680.0
8	TraesCS2D01G368000	chr2B	91.948	385	16	7	521	899	551637110	551637485	3.590000e-145	525.0
9	TraesCS2D01G368000	chr2B	71.243	925	208	39	1428	2311	132511350	132510443	8.940000e-42	182.0
10	TraesCS2D01G368000	chr5B	76.911	1936	385	53	1073	2982	586359938	586358039	0.000000e+00	1042.0
11	TraesCS2D01G368000	chr5B	78.875	658	113	18	2024	2680	664683957	664683325	4.840000e-114	422.0
12	TraesCS2D01G368000	chr5A	76.602	1919	394	45	1087	2982	597688188	597686302	0.000000e+00	1005.0
13	TraesCS2D01G368000	chr5A	78.571	658	115	16	2024	2680	655462796	655462164	1.050000e-110	411.0
14	TraesCS2D01G368000	chr5A	78.904	602	105	11	2080	2679	655991188	655991769	4.910000e-104	388.0
15	TraesCS2D01G368000	chr5A	86.957	161	15	2	1131	1291	318790443	318790289	4.160000e-40	176.0
16	TraesCS2D01G368000	chr5D	79.556	1125	213	15	1863	2982	478594582	478595694	0.000000e+00	787.0
17	TraesCS2D01G368000	chr5D	74.442	493	108	15	1154	1640	478590719	478591199	3.190000e-46	196.0
18	TraesCS2D01G368000	chr5D	75.260	384	82	11	1262	1640	478560247	478560622	1.940000e-38	171.0
19	TraesCS2D01G368000	chr1B	74.417	1888	395	67	1130	2976	266109657	266111497	0.000000e+00	730.0
20	TraesCS2D01G368000	chr1D	73.709	1898	398	79	1074	2933	192566242	192568076	0.000000e+00	647.0
21	TraesCS2D01G368000	chr7D	74.269	1504	332	48	1262	2736	47454252	47455729	2.100000e-162	582.0
22	TraesCS2D01G368000	chr4A	73.985	1503	338	45	1262	2736	662202215	662200738	9.830000e-156	560.0
23	TraesCS2D01G368000	chr4D	80.000	135	23	4	1381	1513	459383716	459383848	3.330000e-16	97.1
24	TraesCS2D01G368000	chr4B	79.851	134	25	2	1381	1513	574169729	574169861	3.330000e-16	97.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G368000	chr2D	472469426	472473474	4048	False	7478.0	7478	100.000	1	4049	1	chr2D.!!$F1	4048
1	TraesCS2D01G368000	chr2D	472467060	472468946	1886	True	1037.0	1037	76.851	1073	2989	1	chr2D.!!$R1	1916
2	TraesCS2D01G368000	chr2A	613990545	613994468	3923	False	2694.0	4743	87.880	26	4049	2	chr2A.!!$F1	4023
3	TraesCS2D01G368000	chr2A	613987856	613989728	1872	True	1050.0	1050	77.167	1087	2989	1	chr2A.!!$R1	1902
4	TraesCS2D01G368000	chr2B	551635710	551640790	5080	False	1932.0	4591	91.774	1	4049	3	chr2B.!!$F1	4048
5	TraesCS2D01G368000	chr2B	551633369	551635258	1889	True	1029.0	1029	76.808	1072	2989	1	chr2B.!!$R2	1917
6	TraesCS2D01G368000	chr5B	586358039	586359938	1899	True	1042.0	1042	76.911	1073	2982	1	chr5B.!!$R1	1909
7	TraesCS2D01G368000	chr5B	664683325	664683957	632	True	422.0	422	78.875	2024	2680	1	chr5B.!!$R2	656
8	TraesCS2D01G368000	chr5A	597686302	597688188	1886	True	1005.0	1005	76.602	1087	2982	1	chr5A.!!$R2	1895
9	TraesCS2D01G368000	chr5A	655462164	655462796	632	True	411.0	411	78.571	2024	2680	1	chr5A.!!$R3	656
10	TraesCS2D01G368000	chr5A	655991188	655991769	581	False	388.0	388	78.904	2080	2679	1	chr5A.!!$F1	599
11	TraesCS2D01G368000	chr5D	478590719	478595694	4975	False	491.5	787	76.999	1154	2982	2	chr5D.!!$F2	1828
12	TraesCS2D01G368000	chr1B	266109657	266111497	1840	False	730.0	730	74.417	1130	2976	1	chr1B.!!$F1	1846
13	TraesCS2D01G368000	chr1D	192566242	192568076	1834	False	647.0	647	73.709	1074	2933	1	chr1D.!!$F1	1859
14	TraesCS2D01G368000	chr7D	47454252	47455729	1477	False	582.0	582	74.269	1262	2736	1	chr7D.!!$F1	1474
15	TraesCS2D01G368000	chr4A	662200738	662202215	1477	True	560.0	560	73.985	1262	2736	1	chr4A.!!$R1	1474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
976	2120	0.034756	TCAATCCACCACTGTGTCGG	59.965	55.0	7.08	6.71	41.09	4.79	F
1039	2183	0.036010	CATGCCGTTCCTTCTCCTGT	60.036	55.0	0.00	0.00	0.00	4.00	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2130	6504	0.457851	CCTTCTTCACCGCGATCTCT	59.542	55.0	8.23	0.0	0.0	3.10	R
3134	7525	2.356695	CGATCCATGTACTACCACACGA	59.643	50.0	0.00	0.0	0.0	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	105	1.280746	CGCAACAGGAGCAACACTG	59.719	57.895	0.00	0.00	40.48	3.66
151	167	2.133742	CTTGAGTTGGTGCGCCCTTG	62.134	60.000	15.15	0.00	0.00	3.61
204	220	1.254026	TCTTACCACTCGTGTCAGGG	58.746	55.000	0.00	0.00	0.00	4.45
205	221	0.389948	CTTACCACTCGTGTCAGGGC	60.390	60.000	0.00	0.00	0.00	5.19
247	263	3.644966	AGACCCGGAAATTGCAAGATA	57.355	42.857	0.73	0.00	0.00	1.98
338	354	2.438434	CCATCCTCAACCACCGGC	60.438	66.667	0.00	0.00	0.00	6.13
355	371	1.298859	GGCGAAAATGAGGCGAGTGT	61.299	55.000	0.00	0.00	0.00	3.55
406	444	1.520342	GGCAGATGAGACGAGCCAC	60.520	63.158	0.00	0.00	44.59	5.01
519	582	2.022195	CATTGCATGCAGCCTCTAGTT	58.978	47.619	21.50	0.00	44.83	2.24
521	584	3.565764	TTGCATGCAGCCTCTAGTTAT	57.434	42.857	21.50	0.00	44.83	1.89
522	585	3.565764	TGCATGCAGCCTCTAGTTATT	57.434	42.857	18.46	0.00	44.83	1.40
525	588	1.939974	TGCAGCCTCTAGTTATTGCG	58.060	50.000	0.00	0.00	34.44	4.85
526	589	1.221414	GCAGCCTCTAGTTATTGCGG	58.779	55.000	0.00	0.00	0.00	5.69
599	1515	3.115892	GCCGGAATCGTTGACGCA	61.116	61.111	5.05	0.00	39.60	5.24
627	1543	1.270625	TGTTGACCCATCAGGACGAAC	60.271	52.381	0.00	0.00	39.89	3.95
628	1544	0.037697	TTGACCCATCAGGACGAACG	60.038	55.000	0.00	0.00	39.89	3.95
629	1545	0.896479	TGACCCATCAGGACGAACGA	60.896	55.000	0.14	0.00	39.89	3.85
735	1659	2.422303	TCGCCCACGATTAGGTAGG	58.578	57.895	0.00	0.00	45.12	3.18
778	1702	2.109774	CCTTGCTCCTCTCACTCTCAT	58.890	52.381	0.00	0.00	0.00	2.90
819	1743	2.826979	TCTGTGCTAATCTCGACGTC	57.173	50.000	5.18	5.18	0.00	4.34
821	1745	2.096013	TCTGTGCTAATCTCGACGTCTG	59.904	50.000	14.70	7.51	0.00	3.51
827	1751	2.949451	AATCTCGACGTCTGCATCTT	57.051	45.000	14.70	0.00	0.00	2.40
828	1752	2.483583	ATCTCGACGTCTGCATCTTC	57.516	50.000	14.70	0.00	0.00	2.87
907	2051	2.702261	TGTTAATTACACACCGGGAGC	58.298	47.619	6.32	0.00	0.00	4.70
975	2119	1.800586	CTTCAATCCACCACTGTGTCG	59.199	52.381	7.08	0.00	41.09	4.35
976	2120	0.034756	TCAATCCACCACTGTGTCGG	59.965	55.000	7.08	6.71	41.09	4.79
977	2121	0.250295	CAATCCACCACTGTGTCGGT	60.250	55.000	7.08	0.00	41.09	4.69
978	2122	1.001520	CAATCCACCACTGTGTCGGTA	59.998	52.381	7.08	0.00	41.09	4.02
979	2123	0.606604	ATCCACCACTGTGTCGGTAC	59.393	55.000	7.08	0.00	41.09	3.34
980	2124	0.468585	TCCACCACTGTGTCGGTACT	60.469	55.000	7.08	0.00	41.09	2.73
981	2125	0.038526	CCACCACTGTGTCGGTACTC	60.039	60.000	7.08	0.00	41.09	2.59
1027	2171	4.592192	CCGATCGAGCCATGCCGT	62.592	66.667	18.66	0.00	0.00	5.68
1039	2183	0.036010	CATGCCGTTCCTTCTCCTGT	60.036	55.000	0.00	0.00	0.00	4.00
2130	6504	2.429930	CCCAAGTCCAAGTCGGCA	59.570	61.111	0.00	0.00	33.14	5.69
2820	7208	3.324930	CTGGTGCTGAGGCTGGGA	61.325	66.667	0.00	0.00	39.59	4.37
3027	7418	0.254178	GCACCATGTCCCAGATGTCT	59.746	55.000	0.00	0.00	0.00	3.41
3074	7465	0.522076	GTCGTCGGCGTGTAACTAGG	60.522	60.000	10.18	0.00	39.49	3.02
3076	7467	0.168788	CGTCGGCGTGTAACTAGGAA	59.831	55.000	6.85	0.00	31.75	3.36
3091	7482	0.179089	AGGAATGCTGTCTGCTAGCG	60.179	55.000	10.77	5.22	44.01	4.26
3130	7521	2.294979	GTTCAGAACCGGGTGAGTTTT	58.705	47.619	6.32	0.00	0.00	2.43
3132	7523	2.567985	TCAGAACCGGGTGAGTTTTTC	58.432	47.619	6.32	0.00	0.00	2.29
3134	7525	2.949644	CAGAACCGGGTGAGTTTTTCTT	59.050	45.455	6.32	0.00	0.00	2.52
3135	7526	3.003378	CAGAACCGGGTGAGTTTTTCTTC	59.997	47.826	6.32	0.00	0.00	2.87
3139	7530	1.937899	CGGGTGAGTTTTTCTTCGTGT	59.062	47.619	0.00	0.00	0.00	4.49
3140	7531	2.286184	CGGGTGAGTTTTTCTTCGTGTG	60.286	50.000	0.00	0.00	0.00	3.82
3141	7532	2.032924	GGGTGAGTTTTTCTTCGTGTGG	59.967	50.000	0.00	0.00	0.00	4.17
3142	7533	2.681344	GGTGAGTTTTTCTTCGTGTGGT	59.319	45.455	0.00	0.00	0.00	4.16
3143	7534	3.872771	GGTGAGTTTTTCTTCGTGTGGTA	59.127	43.478	0.00	0.00	0.00	3.25
3168	7565	4.645535	ACATGGATCGATAACCTGAATGG	58.354	43.478	0.00	0.00	42.93	3.16
3274	7680	3.773119	TCTCCCACCCTCAACTAATGTAC	59.227	47.826	0.00	0.00	0.00	2.90
3382	7802	1.714899	CGTTCCGAATCACCCATGCC	61.715	60.000	0.00	0.00	0.00	4.40
3383	7803	0.679640	GTTCCGAATCACCCATGCCA	60.680	55.000	0.00	0.00	0.00	4.92
3384	7804	0.038890	TTCCGAATCACCCATGCCAA	59.961	50.000	0.00	0.00	0.00	4.52
3385	7805	0.679640	TCCGAATCACCCATGCCAAC	60.680	55.000	0.00	0.00	0.00	3.77
3386	7806	0.964860	CCGAATCACCCATGCCAACA	60.965	55.000	0.00	0.00	0.00	3.33
3387	7807	0.887247	CGAATCACCCATGCCAACAA	59.113	50.000	0.00	0.00	0.00	2.83
3388	7808	1.271934	CGAATCACCCATGCCAACAAA	59.728	47.619	0.00	0.00	0.00	2.83
3389	7809	2.288702	CGAATCACCCATGCCAACAAAA	60.289	45.455	0.00	0.00	0.00	2.44
3390	7810	3.737850	GAATCACCCATGCCAACAAAAA	58.262	40.909	0.00	0.00	0.00	1.94
3425	7845	2.265367	TGCCACAAGATCCAGAACCTA	58.735	47.619	0.00	0.00	0.00	3.08
3448	7868	1.670811	ACAAGTTCCAAGCGTGTTGAG	59.329	47.619	7.51	0.00	0.00	3.02
3497	7917	9.010029	ACATCTTTCTGACGTAAATATGGTTTT	57.990	29.630	10.55	0.00	29.43	2.43
3714	8140	4.946157	CCTTCCAGAAGAAATAGCATGTGT	59.054	41.667	9.00	0.00	40.79	3.72
3772	8199	5.416952	ACTTTGTGCTTCCAGAATCCATAAG	59.583	40.000	0.00	0.00	0.00	1.73
3774	8201	5.378230	TGTGCTTCCAGAATCCATAAGAT	57.622	39.130	0.00	0.00	36.48	2.40
3776	8203	6.291377	TGTGCTTCCAGAATCCATAAGATAC	58.709	40.000	0.00	0.00	33.66	2.24
3777	8204	6.126796	TGTGCTTCCAGAATCCATAAGATACA	60.127	38.462	0.00	0.00	33.66	2.29
3865	8292	1.407618	GAACAAAACCAAGGCCGAAGT	59.592	47.619	0.00	0.00	0.00	3.01
3883	8310	5.796935	CCGAAGTCAAATGCTGTAAATTCTG	59.203	40.000	0.00	0.00	0.00	3.02
3898	8325	7.312154	TGTAAATTCTGCGCAATAACAAATCT	58.688	30.769	13.05	0.00	0.00	2.40
3899	8326	6.636666	AAATTCTGCGCAATAACAAATCTG	57.363	33.333	13.05	0.00	0.00	2.90
3904	8332	3.428198	TGCGCAATAACAAATCTGCAAAC	59.572	39.130	8.16	0.00	34.39	2.93
3928	8356	4.636648	TGTACAAAGTACAAACCCACACAG	59.363	41.667	7.49	0.00	0.00	3.66
3933	8361	1.877443	GTACAAACCCACACAGCGATT	59.123	47.619	0.00	0.00	0.00	3.34
3939	8367	0.240945	CCCACACAGCGATTGTTTCC	59.759	55.000	0.00	0.00	38.16	3.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	105	1.461127	GCAGCTGCCTAATGCGTATAC	59.539	52.381	28.76	0.00	45.60	1.47
151	167	1.149148	GTGCCGAGGAGAAGTCAAAC	58.851	55.000	0.00	0.00	0.00	2.93
181	197	3.741344	CCTGACACGAGTGGTAAGAAAAG	59.259	47.826	8.19	0.00	34.19	2.27
204	220	0.881118	TCTTTGCGACCTTCAATGGC	59.119	50.000	0.00	0.00	0.00	4.40
205	221	3.641437	TTTCTTTGCGACCTTCAATGG	57.359	42.857	0.00	0.00	0.00	3.16
247	263	5.920273	CGCCAATTCTTTTGAACATTGTACT	59.080	36.000	0.00	0.00	41.77	2.73
338	354	2.285220	CCATACACTCGCCTCATTTTCG	59.715	50.000	0.00	0.00	0.00	3.46
355	371	2.505407	CCACTCACTCCATTGACCCATA	59.495	50.000	0.00	0.00	0.00	2.74
429	467	2.247437	GCTCCTATCCTTTGCGGCG	61.247	63.158	0.51	0.51	0.00	6.46
502	565	3.208594	CAATAACTAGAGGCTGCATGCA	58.791	45.455	21.29	21.29	45.15	3.96
503	566	2.031333	GCAATAACTAGAGGCTGCATGC	60.031	50.000	11.82	11.82	41.94	4.06
504	567	2.222678	CGCAATAACTAGAGGCTGCATG	59.777	50.000	0.50	0.00	0.00	4.06
505	568	2.487934	CGCAATAACTAGAGGCTGCAT	58.512	47.619	0.50	0.00	0.00	3.96
506	569	1.473257	CCGCAATAACTAGAGGCTGCA	60.473	52.381	0.50	0.00	0.00	4.41
519	582	3.192230	CGCAAGTCGCCCGCAATA	61.192	61.111	0.00	0.00	37.30	1.90
599	1515	3.240134	ATGGGTCAACAGCGTCGCT	62.240	57.895	15.47	15.47	40.77	4.93
608	1524	1.439679	GTTCGTCCTGATGGGTCAAC	58.560	55.000	0.00	0.00	33.05	3.18
683	1603	1.005037	ACATGTGTGGACGCGTCAT	60.005	52.632	37.26	21.49	0.00	3.06
684	1604	1.953642	CACATGTGTGGACGCGTCA	60.954	57.895	37.26	22.12	42.10	4.35
732	1656	2.975266	TCTAATTTTTGGTCGCGCCTA	58.025	42.857	18.14	9.79	38.35	3.93
733	1657	1.816074	TCTAATTTTTGGTCGCGCCT	58.184	45.000	18.14	2.45	38.35	5.52
734	1658	2.844122	ATCTAATTTTTGGTCGCGCC	57.156	45.000	0.00	6.97	37.90	6.53
735	1659	4.720946	GCAAAATCTAATTTTTGGTCGCGC	60.721	41.667	0.00	0.00	43.56	6.86
778	1702	0.982852	CTGGTGGGATGGTGAGGCTA	60.983	60.000	0.00	0.00	0.00	3.93
819	1743	2.802247	TGTGAAGTTGACGAAGATGCAG	59.198	45.455	0.00	0.00	0.00	4.41
821	1745	2.802816	AGTGTGAAGTTGACGAAGATGC	59.197	45.455	0.00	0.00	0.00	3.91
827	1751	6.477688	CCTTAAAAGTAGTGTGAAGTTGACGA	59.522	38.462	0.00	0.00	0.00	4.20
828	1752	6.257193	ACCTTAAAAGTAGTGTGAAGTTGACG	59.743	38.462	0.00	0.00	0.00	4.35
907	2051	4.667573	TCTCTATAGCCCCACTGATACTG	58.332	47.826	0.00	0.00	0.00	2.74
980	2124	4.468713	CATGGTCTCTGGATCTCTACAGA	58.531	47.826	0.00	0.00	41.13	3.41
981	2125	3.005684	GCATGGTCTCTGGATCTCTACAG	59.994	52.174	0.00	0.00	36.07	2.74
1027	2171	2.907042	GGAAGAGGAACAGGAGAAGGAA	59.093	50.000	0.00	0.00	0.00	3.36
1039	2183	2.052690	CGAGGCCGAGGAAGAGGAA	61.053	63.158	0.00	0.00	38.22	3.36
1174	2324	4.641645	CTGGCTGGTGGCGTTGGA	62.642	66.667	0.00	0.00	42.94	3.53
2130	6504	0.457851	CCTTCTTCACCGCGATCTCT	59.542	55.000	8.23	0.00	0.00	3.10
3130	7521	3.827876	TCCATGTACTACCACACGAAGAA	59.172	43.478	0.00	0.00	0.00	2.52
3132	7523	3.861276	TCCATGTACTACCACACGAAG	57.139	47.619	0.00	0.00	0.00	3.79
3134	7525	2.356695	CGATCCATGTACTACCACACGA	59.643	50.000	0.00	0.00	0.00	4.35
3135	7526	2.356695	TCGATCCATGTACTACCACACG	59.643	50.000	0.00	0.00	0.00	4.49
3139	7530	5.243060	CAGGTTATCGATCCATGTACTACCA	59.757	44.000	0.00	0.00	0.00	3.25
3140	7531	5.475909	TCAGGTTATCGATCCATGTACTACC	59.524	44.000	0.00	0.00	0.00	3.18
3141	7532	6.570672	TCAGGTTATCGATCCATGTACTAC	57.429	41.667	0.00	0.00	0.00	2.73
3142	7533	7.309805	CCATTCAGGTTATCGATCCATGTACTA	60.310	40.741	0.00	0.00	0.00	1.82
3143	7534	6.459066	CATTCAGGTTATCGATCCATGTACT	58.541	40.000	0.00	0.00	0.00	2.73
3191	7588	5.357878	TCTCATCTGAACATAAAACCATGCC	59.642	40.000	0.00	0.00	0.00	4.40
3274	7680	6.092807	GGTTTACATTCAGAAACTCCTAGCAG	59.907	42.308	0.00	0.00	36.12	4.24
3393	7813	5.395990	GGATCTTGTGGCATGGATGATTTTT	60.396	40.000	0.00	0.00	0.00	1.94
3394	7814	4.100498	GGATCTTGTGGCATGGATGATTTT	59.900	41.667	0.00	0.00	0.00	1.82
3395	7815	3.640029	GGATCTTGTGGCATGGATGATTT	59.360	43.478	0.00	0.00	0.00	2.17
3396	7816	3.228453	GGATCTTGTGGCATGGATGATT	58.772	45.455	0.00	0.00	0.00	2.57
3397	7817	2.176148	TGGATCTTGTGGCATGGATGAT	59.824	45.455	0.00	0.00	0.00	2.45
3398	7818	1.565288	TGGATCTTGTGGCATGGATGA	59.435	47.619	0.00	0.00	0.00	2.92
3399	7819	1.954382	CTGGATCTTGTGGCATGGATG	59.046	52.381	0.00	0.00	0.00	3.51
3400	7820	1.848388	TCTGGATCTTGTGGCATGGAT	59.152	47.619	0.00	0.00	0.00	3.41
3401	7821	1.288188	TCTGGATCTTGTGGCATGGA	58.712	50.000	0.00	0.00	0.00	3.41
3402	7822	1.747355	GTTCTGGATCTTGTGGCATGG	59.253	52.381	0.00	0.00	0.00	3.66
3403	7823	1.747355	GGTTCTGGATCTTGTGGCATG	59.253	52.381	0.00	0.00	0.00	4.06
3404	7824	1.637553	AGGTTCTGGATCTTGTGGCAT	59.362	47.619	0.00	0.00	0.00	4.40
3405	7825	1.067295	AGGTTCTGGATCTTGTGGCA	58.933	50.000	0.00	0.00	0.00	4.92
3406	7826	3.010420	GTTAGGTTCTGGATCTTGTGGC	58.990	50.000	0.00	0.00	0.00	5.01
3407	7827	4.003648	GTGTTAGGTTCTGGATCTTGTGG	58.996	47.826	0.00	0.00	0.00	4.17
3425	7845	1.459450	ACACGCTTGGAACTTGTGTT	58.541	45.000	0.00	0.00	40.63	3.32
3448	7868	9.754382	ATGTTCAATGGATCTGTAAAAATATGC	57.246	29.630	0.00	0.00	0.00	3.14
3634	8059	7.692460	ATCTCACTCAGATAATTTGTTGCAA	57.308	32.000	0.00	0.00	40.41	4.08
3682	8108	3.492102	TCTTCTGGAAGGACTTGTTGG	57.508	47.619	10.01	0.00	38.88	3.77
3714	8140	5.183904	CCGTGACATCATAGACCATATGAGA	59.816	44.000	3.65	0.00	37.37	3.27
3772	8199	4.284378	GCATGAAACTGCCTCTTGTATC	57.716	45.455	0.00	0.00	36.10	2.24
3865	8292	3.057666	TGCGCAGAATTTACAGCATTTGA	60.058	39.130	5.66	0.00	0.00	2.69
3883	8310	3.674753	AGTTTGCAGATTTGTTATTGCGC	59.325	39.130	0.00	0.00	39.34	6.09
3898	8325	5.393243	GGGTTTGTACTTTGTACAGTTTGCA	60.393	40.000	9.94	0.00	0.00	4.08
3899	8326	5.038683	GGGTTTGTACTTTGTACAGTTTGC	58.961	41.667	9.94	0.00	0.00	3.68
3904	8332	4.636648	TGTGTGGGTTTGTACTTTGTACAG	59.363	41.667	9.94	0.00	0.00	2.74
3933	8361	8.243961	TGTGAGAATTTTATTCCTTGGAAACA	57.756	30.769	6.16	0.00	39.83	2.83
3939	8367	9.933723	AGGATTTTGTGAGAATTTTATTCCTTG	57.066	29.630	0.00	0.00	0.00	3.61
3972	8406	7.551585	TGCTTTGGAGTTGTTTGATAAAAGAA	58.448	30.769	0.00	0.00	0.00	2.52
3973	8407	7.106439	TGCTTTGGAGTTGTTTGATAAAAGA	57.894	32.000	0.00	0.00	0.00	2.52
3974	8408	7.951530	ATGCTTTGGAGTTGTTTGATAAAAG	57.048	32.000	0.00	0.00	0.00	2.27
3975	8409	8.610896	CAAATGCTTTGGAGTTGTTTGATAAAA	58.389	29.630	0.00	0.00	37.01	1.52
3976	8410	8.140677	CAAATGCTTTGGAGTTGTTTGATAAA	57.859	30.769	0.00	0.00	37.01	1.40
3977	8411	7.712264	CAAATGCTTTGGAGTTGTTTGATAA	57.288	32.000	0.00	0.00	37.01	1.75
4010	8444	5.355350	CACTTGGGTTAGATCCAATTGTCTC	59.645	44.000	4.43	0.65	42.63	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.