Multiple sequence alignment - TraesCS2D01G367400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G367400 chr2D 100.000 4053 0 0 1 4053 472133000 472128948 0.000000e+00 7485.0
1 TraesCS2D01G367400 chr2D 95.882 680 24 3 1 679 539175976 539175300 0.000000e+00 1098.0
2 TraesCS2D01G367400 chr2D 95.729 679 25 3 1 679 615609408 615610082 0.000000e+00 1090.0
3 TraesCS2D01G367400 chr2D 95.595 681 29 1 1 681 628885456 628886135 0.000000e+00 1090.0
4 TraesCS2D01G367400 chr2D 82.933 375 58 6 2592 2963 472229097 472228726 2.330000e-87 333.0
5 TraesCS2D01G367400 chr2A 88.635 2455 164 51 790 3209 613478422 613476048 0.000000e+00 2881.0
6 TraesCS2D01G367400 chr2A 91.256 446 35 4 3610 4053 613474216 613473773 4.480000e-169 604.0
7 TraesCS2D01G367400 chr2A 83.420 386 62 2 2579 2963 613689022 613688638 1.390000e-94 357.0
8 TraesCS2D01G367400 chr2A 84.000 375 54 6 2592 2963 613699755 613699384 4.980000e-94 355.0
9 TraesCS2D01G367400 chr2A 91.489 188 11 3 3219 3403 613474389 613474204 1.870000e-63 254.0
10 TraesCS2D01G367400 chr2B 93.772 1397 69 13 1596 2984 551449879 551448493 0.000000e+00 2082.0
11 TraesCS2D01G367400 chr2B 89.316 833 50 16 804 1601 551451727 551450899 0.000000e+00 1009.0
12 TraesCS2D01G367400 chr2B 84.715 386 56 3 2579 2963 551398795 551398412 2.290000e-102 383.0
13 TraesCS2D01G367400 chr2B 92.164 268 14 2 2631 2898 551446416 551446156 4.950000e-99 372.0
14 TraesCS2D01G367400 chr2B 84.169 379 56 4 2587 2963 551481015 551480639 8.280000e-97 364.0
15 TraesCS2D01G367400 chr2B 83.827 371 58 2 2594 2963 551564617 551564248 6.450000e-93 351.0
16 TraesCS2D01G367400 chr2B 88.688 221 16 5 3396 3611 27547922 27548138 1.120000e-65 261.0
17 TraesCS2D01G367400 chr2B 89.714 175 18 0 3090 3264 551447310 551447136 1.470000e-54 224.0
18 TraesCS2D01G367400 chr2B 79.012 162 17 10 698 855 551398091 551397943 1.200000e-15 95.3
19 TraesCS2D01G367400 chr1D 96.324 680 24 1 1 679 436851664 436852343 0.000000e+00 1116.0
20 TraesCS2D01G367400 chr1D 95.608 683 27 3 1 682 31064862 31064182 0.000000e+00 1092.0
21 TraesCS2D01G367400 chr1D 95.723 678 28 1 1 678 454849332 454850008 0.000000e+00 1090.0
22 TraesCS2D01G367400 chrUn 95.906 684 24 4 1 683 68269377 68268697 0.000000e+00 1105.0
23 TraesCS2D01G367400 chrUn 89.767 215 13 7 3402 3611 234337033 234336823 2.400000e-67 267.0
24 TraesCS2D01G367400 chr3D 95.481 686 25 2 1 680 426433402 426434087 0.000000e+00 1090.0
25 TraesCS2D01G367400 chr3D 90.654 214 12 4 3402 3611 70280435 70280644 1.110000e-70 278.0
26 TraesCS2D01G367400 chr3D 90.654 214 12 4 3402 3611 484803906 484804115 1.110000e-70 278.0
27 TraesCS2D01G367400 chr5D 95.481 686 24 3 1 680 424284039 424283355 0.000000e+00 1088.0
28 TraesCS2D01G367400 chr6D 90.323 217 14 5 3402 3616 13274931 13275142 1.110000e-70 278.0
29 TraesCS2D01G367400 chr5B 89.954 219 13 7 3398 3611 526919050 526918836 1.440000e-69 274.0
30 TraesCS2D01G367400 chr4D 88.938 226 16 4 3396 3617 317351901 317352121 1.860000e-68 270.0
31 TraesCS2D01G367400 chr4D 89.091 220 16 4 3400 3615 353763491 353763706 2.400000e-67 267.0
32 TraesCS2D01G367400 chr6A 88.210 229 14 11 3396 3619 530276363 530276143 1.120000e-65 261.0
33 TraesCS2D01G367400 chr7A 79.851 268 43 7 1309 1567 68211421 68211686 6.920000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G367400 chr2D 472128948 472133000 4052 True 7485.000000 7485 100.0000 1 4053 1 chr2D.!!$R1 4052
1 TraesCS2D01G367400 chr2D 539175300 539175976 676 True 1098.000000 1098 95.8820 1 679 1 chr2D.!!$R3 678
2 TraesCS2D01G367400 chr2D 615609408 615610082 674 False 1090.000000 1090 95.7290 1 679 1 chr2D.!!$F1 678
3 TraesCS2D01G367400 chr2D 628885456 628886135 679 False 1090.000000 1090 95.5950 1 681 1 chr2D.!!$F2 680
4 TraesCS2D01G367400 chr2A 613473773 613478422 4649 True 1246.333333 2881 90.4600 790 4053 3 chr2A.!!$R3 3263
5 TraesCS2D01G367400 chr2B 551446156 551451727 5571 True 921.750000 2082 91.2415 804 3264 4 chr2B.!!$R4 2460
6 TraesCS2D01G367400 chr2B 551397943 551398795 852 True 239.150000 383 81.8635 698 2963 2 chr2B.!!$R3 2265
7 TraesCS2D01G367400 chr1D 436851664 436852343 679 False 1116.000000 1116 96.3240 1 679 1 chr1D.!!$F1 678
8 TraesCS2D01G367400 chr1D 31064182 31064862 680 True 1092.000000 1092 95.6080 1 682 1 chr1D.!!$R1 681
9 TraesCS2D01G367400 chr1D 454849332 454850008 676 False 1090.000000 1090 95.7230 1 678 1 chr1D.!!$F2 677
10 TraesCS2D01G367400 chrUn 68268697 68269377 680 True 1105.000000 1105 95.9060 1 683 1 chrUn.!!$R1 682
11 TraesCS2D01G367400 chr3D 426433402 426434087 685 False 1090.000000 1090 95.4810 1 680 1 chr3D.!!$F2 679
12 TraesCS2D01G367400 chr5D 424283355 424284039 684 True 1088.000000 1088 95.4810 1 680 1 chr5D.!!$R1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
729 740 0.038310 TCAGAGCCTCAGACCGAGAA 59.962 55.0 0.00 0.00 45.45 2.87 F
1234 1295 0.032952 TCGAGCACAAGGTACACACC 59.967 55.0 0.00 0.00 46.19 4.16 F
2767 3862 0.738975 CCATGAACGCCTACTCGAGA 59.261 55.0 21.68 1.61 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 3059 0.040204 CTTTGGGGGAGAGCAATGGT 59.960 55.0 0.00 0.0 0.00 3.55 R
2833 3928 0.337082 TCCCGGAGTTCCTGGTGATA 59.663 55.0 0.73 0.0 40.78 2.15 R
3615 7791 0.033228 CCGAAATGCAAAGCCCACAA 59.967 50.0 0.00 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 241 2.036236 CCGGGTAGCTAGGTTACCG 58.964 63.158 22.56 22.56 39.72 4.02
358 361 1.799181 CGCTCGTTGGAGATTCACGAT 60.799 52.381 0.00 0.00 43.27 3.73
545 554 3.909427 TTCCGGACCAGGGTACTATAT 57.091 47.619 1.83 0.00 0.00 0.86
559 568 6.216251 AGGGTACTATATGTATACGGTCTGGA 59.784 42.308 0.00 0.00 33.23 3.86
577 586 5.482175 GTCTGGATTATACAGGGCTAGACAT 59.518 44.000 4.40 0.00 36.62 3.06
601 610 1.760875 GGATCTGGGCTACGGTGGA 60.761 63.158 0.00 0.00 0.00 4.02
650 661 8.033038 GGAACAAAAATACCCCTCTGAAATTAC 58.967 37.037 0.00 0.00 0.00 1.89
653 664 6.997239 AAAATACCCCTCTGAAATTACGTC 57.003 37.500 0.00 0.00 0.00 4.34
658 669 2.500098 CCCTCTGAAATTACGTCAGGGA 59.500 50.000 7.02 0.00 45.02 4.20
685 696 2.895680 GAGCAGGGCTCGTGATGA 59.104 61.111 2.07 0.00 45.85 2.92
686 697 1.219124 GAGCAGGGCTCGTGATGAA 59.781 57.895 2.07 0.00 45.85 2.57
687 698 0.179062 GAGCAGGGCTCGTGATGAAT 60.179 55.000 2.07 0.00 45.85 2.57
688 699 0.254178 AGCAGGGCTCGTGATGAATT 59.746 50.000 0.00 0.00 30.62 2.17
689 700 0.379669 GCAGGGCTCGTGATGAATTG 59.620 55.000 0.00 0.00 0.00 2.32
690 701 1.742761 CAGGGCTCGTGATGAATTGT 58.257 50.000 0.00 0.00 0.00 2.71
691 702 2.905075 CAGGGCTCGTGATGAATTGTA 58.095 47.619 0.00 0.00 0.00 2.41
692 703 3.470709 CAGGGCTCGTGATGAATTGTAT 58.529 45.455 0.00 0.00 0.00 2.29
693 704 3.496130 CAGGGCTCGTGATGAATTGTATC 59.504 47.826 0.00 0.00 0.00 2.24
694 705 3.389329 AGGGCTCGTGATGAATTGTATCT 59.611 43.478 0.00 0.00 0.00 1.98
695 706 3.496130 GGGCTCGTGATGAATTGTATCTG 59.504 47.826 0.00 0.00 0.00 2.90
696 707 4.122776 GGCTCGTGATGAATTGTATCTGT 58.877 43.478 0.00 0.00 0.00 3.41
697 708 4.025396 GGCTCGTGATGAATTGTATCTGTG 60.025 45.833 0.00 0.00 0.00 3.66
698 709 4.805719 GCTCGTGATGAATTGTATCTGTGA 59.194 41.667 0.00 0.00 0.00 3.58
699 710 5.464722 GCTCGTGATGAATTGTATCTGTGAT 59.535 40.000 0.00 0.00 0.00 3.06
700 711 6.018425 GCTCGTGATGAATTGTATCTGTGATT 60.018 38.462 0.00 0.00 0.00 2.57
701 712 7.237920 TCGTGATGAATTGTATCTGTGATTG 57.762 36.000 0.00 0.00 0.00 2.67
702 713 6.818142 TCGTGATGAATTGTATCTGTGATTGT 59.182 34.615 0.00 0.00 0.00 2.71
703 714 7.334171 TCGTGATGAATTGTATCTGTGATTGTT 59.666 33.333 0.00 0.00 0.00 2.83
704 715 8.603181 CGTGATGAATTGTATCTGTGATTGTTA 58.397 33.333 0.00 0.00 0.00 2.41
705 716 9.708222 GTGATGAATTGTATCTGTGATTGTTAC 57.292 33.333 0.00 0.00 0.00 2.50
706 717 8.603181 TGATGAATTGTATCTGTGATTGTTACG 58.397 33.333 0.00 0.00 0.00 3.18
707 718 7.899178 TGAATTGTATCTGTGATTGTTACGT 57.101 32.000 0.00 0.00 0.00 3.57
708 719 7.738345 TGAATTGTATCTGTGATTGTTACGTG 58.262 34.615 0.00 0.00 0.00 4.49
709 720 5.524511 TTGTATCTGTGATTGTTACGTGC 57.475 39.130 0.00 0.00 0.00 5.34
710 721 4.816392 TGTATCTGTGATTGTTACGTGCT 58.184 39.130 0.00 0.00 0.00 4.40
711 722 4.862574 TGTATCTGTGATTGTTACGTGCTC 59.137 41.667 0.00 0.00 0.00 4.26
712 723 3.378911 TCTGTGATTGTTACGTGCTCA 57.621 42.857 0.00 0.00 0.00 4.26
713 724 3.317150 TCTGTGATTGTTACGTGCTCAG 58.683 45.455 0.00 0.00 0.00 3.35
714 725 3.005367 TCTGTGATTGTTACGTGCTCAGA 59.995 43.478 0.00 0.00 0.00 3.27
715 726 3.317150 TGTGATTGTTACGTGCTCAGAG 58.683 45.455 0.00 0.00 0.00 3.35
716 727 2.092838 GTGATTGTTACGTGCTCAGAGC 59.907 50.000 16.21 16.21 42.82 4.09
717 728 1.661112 GATTGTTACGTGCTCAGAGCC 59.339 52.381 20.16 10.08 41.51 4.70
718 729 0.679505 TTGTTACGTGCTCAGAGCCT 59.320 50.000 20.16 4.85 41.51 4.58
719 730 0.243907 TGTTACGTGCTCAGAGCCTC 59.756 55.000 20.16 11.68 41.51 4.70
720 731 0.243907 GTTACGTGCTCAGAGCCTCA 59.756 55.000 20.16 0.00 41.51 3.86
721 732 0.528017 TTACGTGCTCAGAGCCTCAG 59.472 55.000 20.16 10.44 41.51 3.35
722 733 0.322546 TACGTGCTCAGAGCCTCAGA 60.323 55.000 20.16 0.00 41.51 3.27
723 734 1.153862 CGTGCTCAGAGCCTCAGAC 60.154 63.158 20.16 9.67 41.51 3.51
724 735 1.217779 GTGCTCAGAGCCTCAGACC 59.782 63.158 20.16 0.00 41.51 3.85
725 736 2.346541 TGCTCAGAGCCTCAGACCG 61.347 63.158 20.16 0.00 41.51 4.79
726 737 2.049185 GCTCAGAGCCTCAGACCGA 61.049 63.158 11.84 0.00 34.48 4.69
727 738 2.003658 GCTCAGAGCCTCAGACCGAG 62.004 65.000 11.84 0.00 41.89 4.63
728 739 0.393673 CTCAGAGCCTCAGACCGAGA 60.394 60.000 0.00 0.00 45.45 4.04
729 740 0.038310 TCAGAGCCTCAGACCGAGAA 59.962 55.000 0.00 0.00 45.45 2.87
730 741 1.110442 CAGAGCCTCAGACCGAGAAT 58.890 55.000 0.00 0.00 45.45 2.40
731 742 2.092375 TCAGAGCCTCAGACCGAGAATA 60.092 50.000 0.00 0.00 45.45 1.75
732 743 2.293122 CAGAGCCTCAGACCGAGAATAG 59.707 54.545 0.00 0.00 45.45 1.73
733 744 2.092103 AGAGCCTCAGACCGAGAATAGT 60.092 50.000 0.00 0.00 45.45 2.12
734 745 3.136809 AGAGCCTCAGACCGAGAATAGTA 59.863 47.826 0.00 0.00 45.45 1.82
735 746 4.076394 GAGCCTCAGACCGAGAATAGTAT 58.924 47.826 0.00 0.00 45.45 2.12
736 747 4.076394 AGCCTCAGACCGAGAATAGTATC 58.924 47.826 0.00 0.00 45.45 2.24
737 748 3.821600 GCCTCAGACCGAGAATAGTATCA 59.178 47.826 0.00 0.00 45.45 2.15
738 749 4.083003 GCCTCAGACCGAGAATAGTATCAG 60.083 50.000 0.00 0.00 45.45 2.90
739 750 5.067273 CCTCAGACCGAGAATAGTATCAGT 58.933 45.833 0.00 0.00 45.45 3.41
740 751 5.533154 CCTCAGACCGAGAATAGTATCAGTT 59.467 44.000 0.00 0.00 45.45 3.16
741 752 6.378710 TCAGACCGAGAATAGTATCAGTTG 57.621 41.667 0.00 0.00 0.00 3.16
742 753 4.979197 CAGACCGAGAATAGTATCAGTTGC 59.021 45.833 0.00 0.00 0.00 4.17
743 754 4.038162 AGACCGAGAATAGTATCAGTTGCC 59.962 45.833 0.00 0.00 0.00 4.52
744 755 3.069729 ACCGAGAATAGTATCAGTTGCCC 59.930 47.826 0.00 0.00 0.00 5.36
745 756 3.069586 CCGAGAATAGTATCAGTTGCCCA 59.930 47.826 0.00 0.00 0.00 5.36
746 757 4.262635 CCGAGAATAGTATCAGTTGCCCAT 60.263 45.833 0.00 0.00 0.00 4.00
747 758 5.047306 CCGAGAATAGTATCAGTTGCCCATA 60.047 44.000 0.00 0.00 0.00 2.74
748 759 6.096036 CGAGAATAGTATCAGTTGCCCATAG 58.904 44.000 0.00 0.00 0.00 2.23
749 760 6.365970 AGAATAGTATCAGTTGCCCATAGG 57.634 41.667 0.00 0.00 0.00 2.57
750 761 5.846714 AGAATAGTATCAGTTGCCCATAGGT 59.153 40.000 0.00 0.00 34.57 3.08
751 762 6.330250 AGAATAGTATCAGTTGCCCATAGGTT 59.670 38.462 0.00 0.00 34.57 3.50
752 763 4.862641 AGTATCAGTTGCCCATAGGTTT 57.137 40.909 0.00 0.00 34.57 3.27
753 764 4.526970 AGTATCAGTTGCCCATAGGTTTG 58.473 43.478 0.00 0.00 34.57 2.93
754 765 2.214376 TCAGTTGCCCATAGGTTTGG 57.786 50.000 0.00 0.00 36.46 3.28
755 766 1.707989 TCAGTTGCCCATAGGTTTGGA 59.292 47.619 0.00 0.00 39.25 3.53
756 767 2.109128 TCAGTTGCCCATAGGTTTGGAA 59.891 45.455 0.00 0.00 39.25 3.53
757 768 2.231235 CAGTTGCCCATAGGTTTGGAAC 59.769 50.000 0.00 0.00 39.25 3.62
758 769 2.158385 AGTTGCCCATAGGTTTGGAACA 60.158 45.455 0.00 0.00 39.25 3.18
759 770 2.214376 TGCCCATAGGTTTGGAACAG 57.786 50.000 0.00 0.00 39.25 3.16
760 771 0.817654 GCCCATAGGTTTGGAACAGC 59.182 55.000 0.00 0.00 39.25 4.40
761 772 1.474330 CCCATAGGTTTGGAACAGCC 58.526 55.000 0.00 0.00 42.39 4.85
769 780 4.704833 TGGAACAGCCAGCGCTCC 62.705 66.667 7.13 4.46 43.95 4.70
777 788 2.972505 CCAGCGCTCCGTGTGTTT 60.973 61.111 7.13 0.00 0.00 2.83
778 789 2.551270 CAGCGCTCCGTGTGTTTC 59.449 61.111 7.13 0.00 0.00 2.78
779 790 1.956170 CAGCGCTCCGTGTGTTTCT 60.956 57.895 7.13 0.00 0.00 2.52
780 791 1.956170 AGCGCTCCGTGTGTTTCTG 60.956 57.895 2.64 0.00 0.00 3.02
781 792 1.954146 GCGCTCCGTGTGTTTCTGA 60.954 57.895 0.00 0.00 0.00 3.27
782 793 1.291877 GCGCTCCGTGTGTTTCTGAT 61.292 55.000 0.00 0.00 0.00 2.90
783 794 0.439985 CGCTCCGTGTGTTTCTGATG 59.560 55.000 0.00 0.00 0.00 3.07
784 795 1.795768 GCTCCGTGTGTTTCTGATGA 58.204 50.000 0.00 0.00 0.00 2.92
785 796 2.143122 GCTCCGTGTGTTTCTGATGAA 58.857 47.619 0.00 0.00 0.00 2.57
786 797 2.744202 GCTCCGTGTGTTTCTGATGAAT 59.256 45.455 0.00 0.00 31.56 2.57
787 798 3.932710 GCTCCGTGTGTTTCTGATGAATA 59.067 43.478 0.00 0.00 31.56 1.75
788 799 4.572389 GCTCCGTGTGTTTCTGATGAATAT 59.428 41.667 0.00 0.00 31.56 1.28
789 800 5.065218 GCTCCGTGTGTTTCTGATGAATATT 59.935 40.000 0.00 0.00 31.56 1.28
790 801 6.403636 GCTCCGTGTGTTTCTGATGAATATTT 60.404 38.462 0.00 0.00 31.56 1.40
791 802 7.072177 TCCGTGTGTTTCTGATGAATATTTC 57.928 36.000 0.00 0.00 31.56 2.17
792 803 6.878923 TCCGTGTGTTTCTGATGAATATTTCT 59.121 34.615 0.00 0.00 31.56 2.52
793 804 8.038351 TCCGTGTGTTTCTGATGAATATTTCTA 58.962 33.333 0.00 0.00 31.56 2.10
794 805 8.116753 CCGTGTGTTTCTGATGAATATTTCTAC 58.883 37.037 0.00 0.00 31.56 2.59
795 806 8.873830 CGTGTGTTTCTGATGAATATTTCTACT 58.126 33.333 0.00 0.00 31.56 2.57
796 807 9.979270 GTGTGTTTCTGATGAATATTTCTACTG 57.021 33.333 0.00 0.00 31.56 2.74
797 808 9.942850 TGTGTTTCTGATGAATATTTCTACTGA 57.057 29.630 0.00 0.00 31.56 3.41
817 829 6.663734 ACTGATAAAATTGTAGCCTAGCCTT 58.336 36.000 0.00 0.00 0.00 4.35
819 831 5.299279 TGATAAAATTGTAGCCTAGCCTTGC 59.701 40.000 0.00 0.00 0.00 4.01
877 890 1.524008 GCGTTGGTCTTTCCCCCTTG 61.524 60.000 0.00 0.00 34.77 3.61
882 906 2.424793 TGGTCTTTCCCCCTTGTACTT 58.575 47.619 0.00 0.00 34.77 2.24
915 942 2.295253 GTGGAACCGATAGTGGTCAG 57.705 55.000 0.00 0.00 42.89 3.51
917 944 0.535335 GGAACCGATAGTGGTCAGCA 59.465 55.000 0.00 0.00 42.89 4.41
962 989 1.142465 CCCCACATCTCATCCCTTCTG 59.858 57.143 0.00 0.00 0.00 3.02
1097 1139 2.573915 ACTCCTTCTTCCATCAGGGTTC 59.426 50.000 0.00 0.00 38.11 3.62
1100 1154 2.622436 CTTCTTCCATCAGGGTTCGAC 58.378 52.381 0.00 0.00 38.11 4.20
1108 1162 1.374758 CAGGGTTCGACAGCTCACC 60.375 63.158 0.00 0.00 0.00 4.02
1163 1224 1.590932 AGTTCAACTCTGCAGTGCTG 58.409 50.000 17.60 16.40 31.06 4.41
1219 1280 2.492090 CACTTCCGCTCCCTCGAG 59.508 66.667 5.13 5.13 39.33 4.04
1231 1292 0.389948 CCCTCGAGCACAAGGTACAC 60.390 60.000 6.99 0.00 0.00 2.90
1234 1295 0.032952 TCGAGCACAAGGTACACACC 59.967 55.000 0.00 0.00 46.19 4.16
1260 1321 3.921021 CGCCGTATCTCCATGTATTTCTC 59.079 47.826 0.00 0.00 0.00 2.87
1264 1325 6.295123 GCCGTATCTCCATGTATTTCTCCTTA 60.295 42.308 0.00 0.00 0.00 2.69
1269 1330 5.068723 TCTCCATGTATTTCTCCTTACCGAC 59.931 44.000 0.00 0.00 0.00 4.79
1281 1342 1.331138 CTTACCGACCAGTCTCGCTAG 59.669 57.143 0.00 0.00 31.98 3.42
1288 1349 2.946329 GACCAGTCTCGCTAGAATCTGA 59.054 50.000 7.27 0.00 32.16 3.27
1294 1355 4.947388 AGTCTCGCTAGAATCTGAAACTCT 59.053 41.667 0.00 0.00 32.16 3.24
1416 1477 1.070786 GTTGTTCTGACGGCCAGGA 59.929 57.895 2.24 0.00 43.12 3.86
1430 1491 1.677966 CAGGAACGAGACGAGGGGA 60.678 63.158 0.00 0.00 0.00 4.81
1433 1494 1.530013 GGAACGAGACGAGGGGAACA 61.530 60.000 0.00 0.00 0.00 3.18
1632 2718 5.416013 TCATACTATTCCGGAGCATAGTCTG 59.584 44.000 25.34 24.22 37.40 3.51
1634 2720 2.898729 ATTCCGGAGCATAGTCTGTG 57.101 50.000 3.34 0.00 0.00 3.66
1663 2749 7.888424 TGTTTAGTAGACTGCAGTATTACACA 58.112 34.615 28.71 23.47 0.00 3.72
1669 2755 8.936864 AGTAGACTGCAGTATTACACATTTTTC 58.063 33.333 28.71 12.11 0.00 2.29
1670 2756 7.986085 AGACTGCAGTATTACACATTTTTCT 57.014 32.000 21.73 4.10 0.00 2.52
1674 2760 9.938280 ACTGCAGTATTACACATTTTTCTAGTA 57.062 29.630 20.16 0.00 0.00 1.82
1676 2762 9.938280 TGCAGTATTACACATTTTTCTAGTAGT 57.062 29.630 0.00 0.00 0.00 2.73
1803 2897 2.315356 GTGAATAACGCCGCGACG 59.685 61.111 21.79 14.75 39.50 5.12
2037 3131 5.116069 ACTGCCAACCGTACAATTTTAAG 57.884 39.130 0.00 0.00 0.00 1.85
2086 3180 6.656693 AGCATATAAGATTATTGCTGACCCAC 59.343 38.462 15.31 0.00 36.77 4.61
2148 3243 6.478512 TTGATATAAAGATTTGGGTTGCCC 57.521 37.500 0.00 0.00 45.71 5.36
2199 3294 8.349568 ACTAATCAGTGCGGTATCATCTATTA 57.650 34.615 0.00 0.00 32.25 0.98
2246 3341 4.630069 GGTACATACGACACTGAAAGCATT 59.370 41.667 0.00 0.00 37.60 3.56
2503 3598 2.430075 CGTCGATCACCACGCACA 60.430 61.111 0.00 0.00 0.00 4.57
2557 3652 1.334869 GGTCATGATTCGATGCCAACC 59.665 52.381 0.00 0.00 0.00 3.77
2560 3655 2.945008 TCATGATTCGATGCCAACCTTC 59.055 45.455 0.00 0.00 0.00 3.46
2561 3656 2.787473 TGATTCGATGCCAACCTTCT 57.213 45.000 0.00 0.00 0.00 2.85
2562 3657 3.071874 TGATTCGATGCCAACCTTCTT 57.928 42.857 0.00 0.00 0.00 2.52
2563 3658 3.009723 TGATTCGATGCCAACCTTCTTC 58.990 45.455 0.00 0.00 0.00 2.87
2767 3862 0.738975 CCATGAACGCCTACTCGAGA 59.261 55.000 21.68 1.61 0.00 4.04
2965 4060 1.734465 GAGGCATCCTTCGTGTGAAAG 59.266 52.381 0.00 0.00 31.76 2.62
3003 4113 3.315191 ACTGTTTTGTTGCGCTTATCTGT 59.685 39.130 9.73 0.56 0.00 3.41
3004 4114 3.626977 TGTTTTGTTGCGCTTATCTGTG 58.373 40.909 9.73 0.00 0.00 3.66
3005 4115 2.979813 GTTTTGTTGCGCTTATCTGTGG 59.020 45.455 9.73 0.00 0.00 4.17
3007 5135 1.155889 TGTTGCGCTTATCTGTGGTG 58.844 50.000 9.73 0.00 0.00 4.17
3014 5142 1.806542 GCTTATCTGTGGTGTGTGGTG 59.193 52.381 0.00 0.00 0.00 4.17
3015 5143 2.426522 CTTATCTGTGGTGTGTGGTGG 58.573 52.381 0.00 0.00 0.00 4.61
3016 5144 0.690192 TATCTGTGGTGTGTGGTGGG 59.310 55.000 0.00 0.00 0.00 4.61
3019 5147 0.690192 CTGTGGTGTGTGGTGGGATA 59.310 55.000 0.00 0.00 0.00 2.59
3022 5150 2.290641 TGTGGTGTGTGGTGGGATAATC 60.291 50.000 0.00 0.00 0.00 1.75
3028 5156 3.088532 GTGTGGTGGGATAATCTGCAAA 58.911 45.455 0.00 0.00 0.00 3.68
3029 5157 3.129287 GTGTGGTGGGATAATCTGCAAAG 59.871 47.826 0.00 0.00 0.00 2.77
3140 5313 1.076412 TTGCACTGGGAAAGCACCA 60.076 52.632 0.00 0.00 38.11 4.17
3215 5388 9.880157 ATGAAAACCAATCCAAAATATGAAGAG 57.120 29.630 0.00 0.00 0.00 2.85
3327 7152 2.358247 GTTGGTCGTGGGTGCGAT 60.358 61.111 0.00 0.00 43.07 4.58
3338 7163 1.082117 GGGTGCGATGTCCGTAACTG 61.082 60.000 0.00 0.00 40.53 3.16
3374 7199 2.101770 CGAACTACCCGCTCGTCC 59.898 66.667 0.00 0.00 0.00 4.79
3383 7208 2.579201 CGCTCGTCCCCTGTCATT 59.421 61.111 0.00 0.00 0.00 2.57
3403 7228 1.121378 TATCCGCCGTATTTGTGGGA 58.879 50.000 0.00 0.00 34.09 4.37
3405 7230 2.457778 CCGCCGTATTTGTGGGACG 61.458 63.158 0.00 0.00 0.00 4.79
3407 7232 1.418342 CGCCGTATTTGTGGGACGAG 61.418 60.000 0.00 0.00 0.00 4.18
3408 7233 0.108520 GCCGTATTTGTGGGACGAGA 60.109 55.000 0.00 0.00 0.00 4.04
3410 7235 1.203994 CCGTATTTGTGGGACGAGACT 59.796 52.381 0.00 0.00 0.00 3.24
3411 7236 2.353406 CCGTATTTGTGGGACGAGACTT 60.353 50.000 0.00 0.00 0.00 3.01
3412 7237 2.666508 CGTATTTGTGGGACGAGACTTG 59.333 50.000 0.00 0.00 0.00 3.16
3413 7238 1.523758 ATTTGTGGGACGAGACTTGC 58.476 50.000 0.00 0.00 0.00 4.01
3414 7239 0.468226 TTTGTGGGACGAGACTTGCT 59.532 50.000 0.00 0.00 0.00 3.91
3415 7240 0.033504 TTGTGGGACGAGACTTGCTC 59.966 55.000 0.00 0.00 40.38 4.26
3416 7241 1.079750 GTGGGACGAGACTTGCTCC 60.080 63.158 0.00 0.00 40.70 4.70
3417 7242 2.283529 TGGGACGAGACTTGCTCCC 61.284 63.158 17.38 17.38 42.66 4.30
3418 7243 2.579738 GGACGAGACTTGCTCCCC 59.420 66.667 0.00 0.00 40.70 4.81
3463 7288 2.284150 CGCGTACGTGGATTGATTTGAT 59.716 45.455 20.84 0.00 33.53 2.57
3464 7289 3.242284 CGCGTACGTGGATTGATTTGATT 60.242 43.478 20.84 0.00 33.53 2.57
3465 7290 4.028383 GCGTACGTGGATTGATTTGATTG 58.972 43.478 17.90 0.00 0.00 2.67
3466 7291 4.587306 CGTACGTGGATTGATTTGATTGG 58.413 43.478 7.22 0.00 0.00 3.16
3467 7292 4.331443 CGTACGTGGATTGATTTGATTGGA 59.669 41.667 7.22 0.00 0.00 3.53
3468 7293 5.163804 CGTACGTGGATTGATTTGATTGGAA 60.164 40.000 7.22 0.00 0.00 3.53
3469 7294 5.059404 ACGTGGATTGATTTGATTGGAAC 57.941 39.130 0.00 0.00 0.00 3.62
3470 7295 4.522405 ACGTGGATTGATTTGATTGGAACA 59.478 37.500 0.00 0.00 0.00 3.18
3485 7310 1.475280 GGAACAAAATAAGGCCCGACC 59.525 52.381 0.00 0.00 39.61 4.79
3486 7311 1.475280 GAACAAAATAAGGCCCGACCC 59.525 52.381 0.00 0.00 40.58 4.46
3487 7312 0.323999 ACAAAATAAGGCCCGACCCC 60.324 55.000 0.00 0.00 40.58 4.95
3488 7313 0.323908 CAAAATAAGGCCCGACCCCA 60.324 55.000 0.00 0.00 40.58 4.96
3489 7314 0.323999 AAAATAAGGCCCGACCCCAC 60.324 55.000 0.00 0.00 40.58 4.61
3490 7315 2.219449 AAATAAGGCCCGACCCCACC 62.219 60.000 0.00 0.00 40.58 4.61
3496 7321 2.611486 CCCGACCCCACCCCTTTA 60.611 66.667 0.00 0.00 0.00 1.85
3498 7323 1.769006 CCGACCCCACCCCTTTAAA 59.231 57.895 0.00 0.00 0.00 1.52
3499 7324 0.112801 CCGACCCCACCCCTTTAAAA 59.887 55.000 0.00 0.00 0.00 1.52
3500 7325 1.272816 CCGACCCCACCCCTTTAAAAT 60.273 52.381 0.00 0.00 0.00 1.82
3508 7684 3.365472 CACCCCTTTAAAATCAGGAGGG 58.635 50.000 0.00 0.00 45.42 4.30
3516 7692 7.065504 CCTTTAAAATCAGGAGGGAGATGATT 58.934 38.462 0.00 0.00 43.64 2.57
3521 7697 7.645132 AAATCAGGAGGGAGATGATTAGATT 57.355 36.000 0.49 0.00 41.56 2.40
3522 7698 8.748179 AAATCAGGAGGGAGATGATTAGATTA 57.252 34.615 0.49 0.00 41.56 1.75
3523 7699 7.976414 ATCAGGAGGGAGATGATTAGATTAG 57.024 40.000 0.00 0.00 29.42 1.73
3524 7700 7.108667 TCAGGAGGGAGATGATTAGATTAGA 57.891 40.000 0.00 0.00 0.00 2.10
3525 7701 7.539292 TCAGGAGGGAGATGATTAGATTAGAA 58.461 38.462 0.00 0.00 0.00 2.10
3526 7702 8.013072 TCAGGAGGGAGATGATTAGATTAGAAA 58.987 37.037 0.00 0.00 0.00 2.52
3527 7703 8.313292 CAGGAGGGAGATGATTAGATTAGAAAG 58.687 40.741 0.00 0.00 0.00 2.62
3528 7704 7.457535 AGGAGGGAGATGATTAGATTAGAAAGG 59.542 40.741 0.00 0.00 0.00 3.11
3529 7705 7.456269 GGAGGGAGATGATTAGATTAGAAAGGA 59.544 40.741 0.00 0.00 0.00 3.36
3530 7706 8.805145 AGGGAGATGATTAGATTAGAAAGGAA 57.195 34.615 0.00 0.00 0.00 3.36
3531 7707 8.879227 AGGGAGATGATTAGATTAGAAAGGAAG 58.121 37.037 0.00 0.00 0.00 3.46
3532 7708 8.875168 GGGAGATGATTAGATTAGAAAGGAAGA 58.125 37.037 0.00 0.00 0.00 2.87
3567 7743 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
3568 7744 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
3569 7745 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
3570 7746 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
3571 7747 0.904865 AGGATGAAGTGGGAGCACGA 60.905 55.000 0.00 0.00 0.00 4.35
3572 7748 0.036388 GGATGAAGTGGGAGCACGAA 60.036 55.000 0.00 0.00 0.00 3.85
3573 7749 1.407437 GGATGAAGTGGGAGCACGAAT 60.407 52.381 0.00 0.00 0.00 3.34
3576 7752 1.002134 AAGTGGGAGCACGAATGGG 60.002 57.895 0.00 0.00 0.00 4.00
3577 7753 1.488705 AAGTGGGAGCACGAATGGGA 61.489 55.000 0.00 0.00 0.00 4.37
3579 7755 1.612146 TGGGAGCACGAATGGGAGA 60.612 57.895 0.00 0.00 0.00 3.71
3582 7758 1.092345 GGAGCACGAATGGGAGAAGC 61.092 60.000 0.00 0.00 0.00 3.86
3583 7759 0.391661 GAGCACGAATGGGAGAAGCA 60.392 55.000 0.00 0.00 0.00 3.91
3584 7760 0.254178 AGCACGAATGGGAGAAGCAT 59.746 50.000 0.00 0.00 0.00 3.79
3585 7761 0.379669 GCACGAATGGGAGAAGCATG 59.620 55.000 0.00 0.00 0.00 4.06
3587 7763 0.107017 ACGAATGGGAGAAGCATGGG 60.107 55.000 0.00 0.00 0.00 4.00
3588 7764 0.820891 CGAATGGGAGAAGCATGGGG 60.821 60.000 0.00 0.00 0.00 4.96
3589 7765 0.552848 GAATGGGAGAAGCATGGGGA 59.447 55.000 0.00 0.00 0.00 4.81
3591 7767 1.358830 ATGGGAGAAGCATGGGGAGG 61.359 60.000 0.00 0.00 0.00 4.30
3592 7768 2.761465 GGGAGAAGCATGGGGAGGG 61.761 68.421 0.00 0.00 0.00 4.30
3593 7769 1.694169 GGAGAAGCATGGGGAGGGA 60.694 63.158 0.00 0.00 0.00 4.20
3594 7770 1.704007 GGAGAAGCATGGGGAGGGAG 61.704 65.000 0.00 0.00 0.00 4.30
3595 7771 2.194326 GAAGCATGGGGAGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
3596 7772 2.614969 AAGCATGGGGAGGGAGCA 60.615 61.111 0.00 0.00 0.00 4.26
3597 7773 2.621517 GAAGCATGGGGAGGGAGCAG 62.622 65.000 0.00 0.00 0.00 4.24
3601 7777 1.229951 ATGGGGAGGGAGCAGACAA 60.230 57.895 0.00 0.00 0.00 3.18
3602 7778 1.277580 ATGGGGAGGGAGCAGACAAG 61.278 60.000 0.00 0.00 0.00 3.16
3603 7779 2.270527 GGGAGGGAGCAGACAAGC 59.729 66.667 0.00 0.00 0.00 4.01
3604 7780 2.270527 GGAGGGAGCAGACAAGCC 59.729 66.667 0.00 0.00 34.23 4.35
3605 7781 2.125350 GAGGGAGCAGACAAGCCG 60.125 66.667 0.00 0.00 34.23 5.52
3606 7782 3.672295 GAGGGAGCAGACAAGCCGG 62.672 68.421 0.00 0.00 34.23 6.13
3607 7783 3.706373 GGGAGCAGACAAGCCGGA 61.706 66.667 5.05 0.00 34.23 5.14
3608 7784 2.586792 GGAGCAGACAAGCCGGAT 59.413 61.111 5.05 0.00 34.23 4.18
3610 7786 1.522580 GAGCAGACAAGCCGGATCC 60.523 63.158 5.05 0.00 34.23 3.36
3611 7787 2.892425 GCAGACAAGCCGGATCCG 60.892 66.667 27.65 27.65 39.44 4.18
3613 7789 1.813859 CAGACAAGCCGGATCCGTA 59.186 57.895 31.22 0.00 37.81 4.02
3614 7790 0.389391 CAGACAAGCCGGATCCGTAT 59.611 55.000 31.22 17.32 37.81 3.06
3615 7791 1.120530 AGACAAGCCGGATCCGTATT 58.879 50.000 31.22 21.92 37.81 1.89
3616 7792 1.485066 AGACAAGCCGGATCCGTATTT 59.515 47.619 31.22 19.07 37.81 1.40
3617 7793 1.597663 GACAAGCCGGATCCGTATTTG 59.402 52.381 31.22 28.78 37.81 2.32
3618 7794 1.065709 ACAAGCCGGATCCGTATTTGT 60.066 47.619 31.22 29.34 37.81 2.83
3619 7795 1.330521 CAAGCCGGATCCGTATTTGTG 59.669 52.381 31.22 15.83 37.81 3.33
3620 7796 0.179056 AGCCGGATCCGTATTTGTGG 60.179 55.000 31.22 15.10 37.81 4.17
3651 7959 1.606531 GGCTCCCAGCTTGAGACAT 59.393 57.895 13.07 0.00 41.99 3.06
3668 7976 2.014128 ACATTTAATTCGGACAGGCGG 58.986 47.619 0.00 0.00 0.00 6.13
3669 7977 1.333619 CATTTAATTCGGACAGGCGGG 59.666 52.381 0.00 0.00 0.00 6.13
4036 8399 4.141824 TGAATATGTGCCACGGTCTATGAA 60.142 41.667 0.00 0.00 0.00 2.57
4043 8406 2.747446 GCCACGGTCTATGAAACATGTT 59.253 45.455 4.92 4.92 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 241 2.191375 GGTTAACCTAGCGGGGCC 59.809 66.667 17.83 0.00 40.03 5.80
527 535 2.885616 ACATATAGTACCCTGGTCCGG 58.114 52.381 0.00 0.00 0.00 5.14
545 554 5.713389 CCCTGTATAATCCAGACCGTATACA 59.287 44.000 3.32 0.00 37.19 2.29
559 568 4.171234 AGCCATGTCTAGCCCTGTATAAT 58.829 43.478 0.00 0.00 0.00 1.28
577 586 1.915228 GTAGCCCAGATCCAAGCCA 59.085 57.895 0.00 0.00 0.00 4.75
650 661 4.135153 CGGTGCTCCTCCCTGACG 62.135 72.222 2.85 0.00 0.00 4.35
653 664 3.465403 CTCCGGTGCTCCTCCCTG 61.465 72.222 0.00 0.00 0.00 4.45
681 692 8.604035 ACGTAACAATCACAGATACAATTCATC 58.396 33.333 0.00 0.00 0.00 2.92
682 693 8.390354 CACGTAACAATCACAGATACAATTCAT 58.610 33.333 0.00 0.00 0.00 2.57
683 694 7.623297 GCACGTAACAATCACAGATACAATTCA 60.623 37.037 0.00 0.00 0.00 2.57
684 695 6.682863 GCACGTAACAATCACAGATACAATTC 59.317 38.462 0.00 0.00 0.00 2.17
685 696 6.371548 AGCACGTAACAATCACAGATACAATT 59.628 34.615 0.00 0.00 0.00 2.32
686 697 5.874810 AGCACGTAACAATCACAGATACAAT 59.125 36.000 0.00 0.00 0.00 2.71
687 698 5.234752 AGCACGTAACAATCACAGATACAA 58.765 37.500 0.00 0.00 0.00 2.41
688 699 4.816392 AGCACGTAACAATCACAGATACA 58.184 39.130 0.00 0.00 0.00 2.29
689 700 4.862574 TGAGCACGTAACAATCACAGATAC 59.137 41.667 0.00 0.00 0.00 2.24
690 701 5.066968 TGAGCACGTAACAATCACAGATA 57.933 39.130 0.00 0.00 0.00 1.98
691 702 3.925379 TGAGCACGTAACAATCACAGAT 58.075 40.909 0.00 0.00 0.00 2.90
692 703 3.005367 TCTGAGCACGTAACAATCACAGA 59.995 43.478 0.00 0.00 0.00 3.41
693 704 3.317150 TCTGAGCACGTAACAATCACAG 58.683 45.455 0.00 0.00 0.00 3.66
694 705 3.317150 CTCTGAGCACGTAACAATCACA 58.683 45.455 0.00 0.00 0.00 3.58
695 706 2.092838 GCTCTGAGCACGTAACAATCAC 59.907 50.000 24.02 0.00 41.89 3.06
696 707 2.337583 GCTCTGAGCACGTAACAATCA 58.662 47.619 24.02 0.00 41.89 2.57
697 708 1.661112 GGCTCTGAGCACGTAACAATC 59.339 52.381 28.95 5.80 44.75 2.67
698 709 1.276421 AGGCTCTGAGCACGTAACAAT 59.724 47.619 28.95 2.52 44.75 2.71
699 710 0.679505 AGGCTCTGAGCACGTAACAA 59.320 50.000 28.95 0.00 44.75 2.83
700 711 0.243907 GAGGCTCTGAGCACGTAACA 59.756 55.000 28.95 0.00 44.75 2.41
701 712 0.243907 TGAGGCTCTGAGCACGTAAC 59.756 55.000 28.95 12.00 44.75 2.50
702 713 0.528017 CTGAGGCTCTGAGCACGTAA 59.472 55.000 28.95 10.13 44.75 3.18
703 714 0.322546 TCTGAGGCTCTGAGCACGTA 60.323 55.000 28.95 12.33 44.75 3.57
704 715 1.604879 TCTGAGGCTCTGAGCACGT 60.605 57.895 28.95 14.23 44.75 4.49
705 716 1.153862 GTCTGAGGCTCTGAGCACG 60.154 63.158 28.95 17.26 44.75 5.34
706 717 1.217779 GGTCTGAGGCTCTGAGCAC 59.782 63.158 34.34 21.59 44.75 4.40
707 718 2.346541 CGGTCTGAGGCTCTGAGCA 61.347 63.158 36.12 13.79 44.75 4.26
708 719 2.003658 CTCGGTCTGAGGCTCTGAGC 62.004 65.000 31.56 31.56 41.29 4.26
709 720 0.393673 TCTCGGTCTGAGGCTCTGAG 60.394 60.000 22.47 16.42 45.32 3.35
710 721 0.038310 TTCTCGGTCTGAGGCTCTGA 59.962 55.000 18.78 18.78 45.32 3.27
711 722 1.110442 ATTCTCGGTCTGAGGCTCTG 58.890 55.000 16.72 15.59 45.32 3.35
712 723 2.092103 ACTATTCTCGGTCTGAGGCTCT 60.092 50.000 16.72 0.00 45.32 4.09
713 724 2.303175 ACTATTCTCGGTCTGAGGCTC 58.697 52.381 7.79 7.79 45.32 4.70
714 725 2.445682 ACTATTCTCGGTCTGAGGCT 57.554 50.000 8.86 0.00 45.32 4.58
715 726 3.821600 TGATACTATTCTCGGTCTGAGGC 59.178 47.826 8.86 0.00 45.32 4.70
716 727 5.067273 ACTGATACTATTCTCGGTCTGAGG 58.933 45.833 8.86 0.00 45.32 3.86
717 728 6.434596 CAACTGATACTATTCTCGGTCTGAG 58.565 44.000 1.83 1.83 46.72 3.35
718 729 5.221067 GCAACTGATACTATTCTCGGTCTGA 60.221 44.000 0.00 0.00 30.70 3.27
719 730 4.979197 GCAACTGATACTATTCTCGGTCTG 59.021 45.833 0.00 0.00 30.70 3.51
720 731 4.038162 GGCAACTGATACTATTCTCGGTCT 59.962 45.833 0.00 0.00 30.70 3.85
721 732 4.299978 GGCAACTGATACTATTCTCGGTC 58.700 47.826 0.00 0.00 30.70 4.79
722 733 3.069729 GGGCAACTGATACTATTCTCGGT 59.930 47.826 0.00 0.00 32.37 4.69
723 734 3.069586 TGGGCAACTGATACTATTCTCGG 59.930 47.826 0.00 0.00 0.00 4.63
724 735 4.322080 TGGGCAACTGATACTATTCTCG 57.678 45.455 0.00 0.00 0.00 4.04
725 736 6.014156 ACCTATGGGCAACTGATACTATTCTC 60.014 42.308 0.00 0.00 35.63 2.87
726 737 5.846714 ACCTATGGGCAACTGATACTATTCT 59.153 40.000 0.00 0.00 35.63 2.40
727 738 6.115448 ACCTATGGGCAACTGATACTATTC 57.885 41.667 0.00 0.00 35.63 1.75
728 739 6.515512 AACCTATGGGCAACTGATACTATT 57.484 37.500 0.00 0.00 35.63 1.73
729 740 6.299141 CAAACCTATGGGCAACTGATACTAT 58.701 40.000 0.00 0.00 35.63 2.12
730 741 5.397447 CCAAACCTATGGGCAACTGATACTA 60.397 44.000 0.00 0.00 36.79 1.82
731 742 4.526970 CAAACCTATGGGCAACTGATACT 58.473 43.478 0.00 0.00 35.63 2.12
732 743 3.632145 CCAAACCTATGGGCAACTGATAC 59.368 47.826 0.00 0.00 36.79 2.24
733 744 3.525609 TCCAAACCTATGGGCAACTGATA 59.474 43.478 0.00 0.00 41.05 2.15
734 745 2.311542 TCCAAACCTATGGGCAACTGAT 59.688 45.455 0.00 0.00 41.05 2.90
735 746 1.707989 TCCAAACCTATGGGCAACTGA 59.292 47.619 0.00 0.00 41.05 3.41
736 747 2.214376 TCCAAACCTATGGGCAACTG 57.786 50.000 0.00 0.00 41.05 3.16
737 748 2.158385 TGTTCCAAACCTATGGGCAACT 60.158 45.455 0.00 0.00 41.05 3.16
738 749 2.231235 CTGTTCCAAACCTATGGGCAAC 59.769 50.000 0.00 0.00 41.05 4.17
739 750 2.524306 CTGTTCCAAACCTATGGGCAA 58.476 47.619 0.00 0.00 41.05 4.52
740 751 1.890573 GCTGTTCCAAACCTATGGGCA 60.891 52.381 0.00 0.00 41.05 5.36
741 752 0.817654 GCTGTTCCAAACCTATGGGC 59.182 55.000 0.00 0.00 41.05 5.36
742 753 1.272425 TGGCTGTTCCAAACCTATGGG 60.272 52.381 0.00 0.00 43.21 4.00
743 754 2.094675 CTGGCTGTTCCAAACCTATGG 58.905 52.381 0.00 0.00 46.01 2.74
744 755 1.474077 GCTGGCTGTTCCAAACCTATG 59.526 52.381 0.00 0.00 46.01 2.23
745 756 1.839424 GCTGGCTGTTCCAAACCTAT 58.161 50.000 0.00 0.00 46.01 2.57
746 757 0.605319 CGCTGGCTGTTCCAAACCTA 60.605 55.000 0.00 0.00 46.01 3.08
747 758 1.898574 CGCTGGCTGTTCCAAACCT 60.899 57.895 0.00 0.00 46.01 3.50
748 759 2.644992 CGCTGGCTGTTCCAAACC 59.355 61.111 0.00 0.00 46.01 3.27
749 760 2.050077 GCGCTGGCTGTTCCAAAC 60.050 61.111 0.00 0.00 46.01 2.93
760 771 2.954753 GAAACACACGGAGCGCTGG 61.955 63.158 18.48 9.49 0.00 4.85
761 772 1.956170 AGAAACACACGGAGCGCTG 60.956 57.895 18.48 3.12 0.00 5.18
762 773 1.956170 CAGAAACACACGGAGCGCT 60.956 57.895 11.27 11.27 0.00 5.92
763 774 1.291877 ATCAGAAACACACGGAGCGC 61.292 55.000 0.00 0.00 0.00 5.92
764 775 0.439985 CATCAGAAACACACGGAGCG 59.560 55.000 0.00 0.00 0.00 5.03
765 776 1.795768 TCATCAGAAACACACGGAGC 58.204 50.000 0.00 0.00 0.00 4.70
766 777 6.668541 AATATTCATCAGAAACACACGGAG 57.331 37.500 0.00 0.00 37.29 4.63
767 778 6.878923 AGAAATATTCATCAGAAACACACGGA 59.121 34.615 0.00 0.00 37.29 4.69
768 779 7.076842 AGAAATATTCATCAGAAACACACGG 57.923 36.000 0.00 0.00 37.29 4.94
769 780 8.873830 AGTAGAAATATTCATCAGAAACACACG 58.126 33.333 0.00 0.00 37.29 4.49
770 781 9.979270 CAGTAGAAATATTCATCAGAAACACAC 57.021 33.333 0.00 0.00 37.29 3.82
771 782 9.942850 TCAGTAGAAATATTCATCAGAAACACA 57.057 29.630 0.00 0.00 37.29 3.72
788 799 9.326413 GCTAGGCTACAATTTTATCAGTAGAAA 57.674 33.333 0.00 0.00 36.86 2.52
789 800 7.931948 GGCTAGGCTACAATTTTATCAGTAGAA 59.068 37.037 9.46 0.00 36.86 2.10
790 801 7.290248 AGGCTAGGCTACAATTTTATCAGTAGA 59.710 37.037 18.73 0.00 36.86 2.59
791 802 7.445945 AGGCTAGGCTACAATTTTATCAGTAG 58.554 38.462 18.73 0.00 37.57 2.57
792 803 7.374975 AGGCTAGGCTACAATTTTATCAGTA 57.625 36.000 18.73 0.00 0.00 2.74
793 804 6.253946 AGGCTAGGCTACAATTTTATCAGT 57.746 37.500 18.73 0.00 0.00 3.41
794 805 6.514048 GCAAGGCTAGGCTACAATTTTATCAG 60.514 42.308 20.55 0.00 0.00 2.90
795 806 5.299279 GCAAGGCTAGGCTACAATTTTATCA 59.701 40.000 20.55 0.00 0.00 2.15
796 807 5.560953 CGCAAGGCTAGGCTACAATTTTATC 60.561 44.000 20.55 0.00 0.00 1.75
797 808 4.275936 CGCAAGGCTAGGCTACAATTTTAT 59.724 41.667 20.55 0.00 0.00 1.40
798 809 3.625764 CGCAAGGCTAGGCTACAATTTTA 59.374 43.478 20.55 0.00 0.00 1.52
799 810 2.423538 CGCAAGGCTAGGCTACAATTTT 59.576 45.455 20.55 0.00 0.00 1.82
800 811 2.017049 CGCAAGGCTAGGCTACAATTT 58.983 47.619 20.55 0.00 0.00 1.82
817 829 5.809719 TTTACATATGCAGAACAATCGCA 57.190 34.783 1.58 0.00 38.67 5.10
819 831 6.408039 GTCGTTTTACATATGCAGAACAATCG 59.592 38.462 1.58 0.00 0.00 3.34
877 890 1.076332 CCTACTGCGGCAACAAGTAC 58.924 55.000 3.44 0.00 35.05 2.73
882 906 2.031919 CCACCTACTGCGGCAACA 59.968 61.111 3.44 0.00 0.00 3.33
902 929 1.227380 GGCTGCTGACCACTATCGG 60.227 63.158 0.00 0.00 0.00 4.18
915 942 1.069935 GGAATAGAGGACCGGCTGC 59.930 63.158 0.00 0.00 0.00 5.25
917 944 1.459730 GGGGAATAGAGGACCGGCT 60.460 63.158 0.00 0.00 0.00 5.52
926 953 1.152312 GGGGCGAGAGGGGAATAGA 60.152 63.158 0.00 0.00 0.00 1.98
962 989 1.796796 CCCGCAGCTTTTGTAGAGC 59.203 57.895 0.00 0.00 40.43 4.09
1097 1139 0.250295 TCCAAAAGGGTGAGCTGTCG 60.250 55.000 0.00 0.00 38.11 4.35
1100 1154 1.272092 TGGATCCAAAAGGGTGAGCTG 60.272 52.381 13.46 0.00 38.11 4.24
1108 1162 3.500343 ACCTGAACTTGGATCCAAAAGG 58.500 45.455 27.75 27.75 35.33 3.11
1231 1292 1.518572 GGAGATACGGCGTGTGGTG 60.519 63.158 24.86 0.00 0.00 4.17
1234 1295 0.179111 ACATGGAGATACGGCGTGTG 60.179 55.000 24.86 11.58 0.00 3.82
1238 1299 3.914312 AGAAATACATGGAGATACGGCG 58.086 45.455 4.80 4.80 0.00 6.46
1260 1321 1.139095 GCGAGACTGGTCGGTAAGG 59.861 63.158 4.23 0.00 40.44 2.69
1269 1330 4.109050 GTTTCAGATTCTAGCGAGACTGG 58.891 47.826 12.46 0.00 0.00 4.00
1281 1342 1.731720 AGCGGCAGAGTTTCAGATTC 58.268 50.000 1.45 0.00 0.00 2.52
1288 1349 2.471255 GCACATAGCGGCAGAGTTT 58.529 52.632 1.45 0.00 0.00 2.66
1416 1477 1.965219 CTGTTCCCCTCGTCTCGTT 59.035 57.895 0.00 0.00 0.00 3.85
1576 1637 8.272173 ACAGATAATAAAATCCCGAAAAGAGGA 58.728 33.333 0.00 0.00 36.36 3.71
1585 1646 6.761242 TGACAGTGACAGATAATAAAATCCCG 59.239 38.462 0.00 0.00 0.00 5.14
1632 2718 3.399330 TGCAGTCTACTAAACAAGCCAC 58.601 45.455 0.00 0.00 0.00 5.01
1634 2720 3.665190 ACTGCAGTCTACTAAACAAGCC 58.335 45.455 15.25 0.00 0.00 4.35
1691 2781 7.905493 GCTACTCATTTTGTACTAAATCAGTGC 59.095 37.037 22.64 19.51 40.08 4.40
1738 2830 4.389374 ACTTGTCATACCAAGGTTCAGTG 58.611 43.478 0.00 0.00 44.89 3.66
1803 2897 2.353357 TGACATGCTCAATCCCATCC 57.647 50.000 0.00 0.00 0.00 3.51
1851 2945 1.462869 GGCGTTGTTACCGTTTCATCG 60.463 52.381 0.00 0.00 0.00 3.84
1964 3058 0.251742 TTTGGGGGAGAGCAATGGTG 60.252 55.000 0.00 0.00 0.00 4.17
1965 3059 0.040204 CTTTGGGGGAGAGCAATGGT 59.960 55.000 0.00 0.00 0.00 3.55
1966 3060 0.040204 ACTTTGGGGGAGAGCAATGG 59.960 55.000 0.00 0.00 0.00 3.16
1998 3092 3.604582 GCAGTACTCTGAAAATGGCTCT 58.395 45.455 0.00 0.00 43.76 4.09
2000 3094 2.040278 TGGCAGTACTCTGAAAATGGCT 59.960 45.455 12.53 0.00 43.76 4.75
2037 3131 3.500982 TGAAACTAAATTGCGCAGATGC 58.499 40.909 11.31 0.00 37.78 3.91
2076 3170 0.537143 GACATGTTGGTGGGTCAGCA 60.537 55.000 0.00 0.00 40.20 4.41
2086 3180 1.203052 GGGCTTGACATGACATGTTGG 59.797 52.381 21.66 14.89 45.03 3.77
2199 3294 7.386059 CCAAGTGGTGCTTAAGGATAATTTTT 58.614 34.615 4.29 0.00 35.27 1.94
2246 3341 4.125124 TGAACCCATGGAGGAAAATGAA 57.875 40.909 15.22 0.00 41.22 2.57
2309 3404 1.843368 CAGCTGGTCCACATCCAATT 58.157 50.000 5.57 0.00 34.35 2.32
2332 3427 2.099831 GCGGTCTCGTACGTCTGG 59.900 66.667 16.05 4.73 38.89 3.86
2495 3590 3.004315 AGGAACTTATTTGTTGTGCGTGG 59.996 43.478 0.00 0.00 27.25 4.94
2503 3598 4.892934 TGCTGTTGGAGGAACTTATTTGTT 59.107 37.500 0.00 0.00 41.55 2.83
2550 3645 1.149101 AGGAAGGAAGAAGGTTGGCA 58.851 50.000 0.00 0.00 0.00 4.92
2557 3652 1.813178 GGCCGAAAAGGAAGGAAGAAG 59.187 52.381 0.00 0.00 45.00 2.85
2560 3655 1.923227 GCGGCCGAAAAGGAAGGAAG 61.923 60.000 33.48 0.00 45.00 3.46
2561 3656 1.969589 GCGGCCGAAAAGGAAGGAA 60.970 57.895 33.48 0.00 45.00 3.36
2562 3657 2.359478 GCGGCCGAAAAGGAAGGA 60.359 61.111 33.48 0.00 45.00 3.36
2563 3658 2.671619 TGCGGCCGAAAAGGAAGG 60.672 61.111 33.48 0.00 45.00 3.46
2833 3928 0.337082 TCCCGGAGTTCCTGGTGATA 59.663 55.000 0.73 0.00 40.78 2.15
2965 4060 7.091443 ACAAAACAGTAGTACTACAGATGCTC 58.909 38.462 29.87 5.43 38.48 4.26
3003 4113 2.026356 CAGATTATCCCACCACACACCA 60.026 50.000 0.00 0.00 0.00 4.17
3004 4114 2.643551 CAGATTATCCCACCACACACC 58.356 52.381 0.00 0.00 0.00 4.16
3005 4115 2.017049 GCAGATTATCCCACCACACAC 58.983 52.381 0.00 0.00 0.00 3.82
3007 5135 2.418368 TGCAGATTATCCCACCACAC 57.582 50.000 0.00 0.00 0.00 3.82
3014 5142 3.798202 ACTCGACTTTGCAGATTATCCC 58.202 45.455 0.00 0.00 0.00 3.85
3015 5143 4.870426 TGAACTCGACTTTGCAGATTATCC 59.130 41.667 0.00 0.00 0.00 2.59
3016 5144 6.408858 TTGAACTCGACTTTGCAGATTATC 57.591 37.500 0.00 0.00 0.00 1.75
3019 5147 5.499139 TTTTGAACTCGACTTTGCAGATT 57.501 34.783 0.00 0.00 0.00 2.40
3061 5207 1.873591 GTCACATGCGAAGTCCAAACT 59.126 47.619 0.00 0.00 37.32 2.66
3215 5388 3.425162 AGAACTTTGTGGGATGGAGAC 57.575 47.619 0.00 0.00 0.00 3.36
3321 7146 1.082117 CCCAGTTACGGACATCGCAC 61.082 60.000 0.00 0.00 43.89 5.34
3358 7183 2.493501 GGGACGAGCGGGTAGTTC 59.506 66.667 0.00 0.00 0.00 3.01
3361 7186 3.528370 CAGGGGACGAGCGGGTAG 61.528 72.222 0.00 0.00 0.00 3.18
3371 7196 1.594331 GCGGATAAATGACAGGGGAC 58.406 55.000 0.00 0.00 0.00 4.46
3373 7198 0.884704 CGGCGGATAAATGACAGGGG 60.885 60.000 0.00 0.00 0.00 4.79
3374 7199 0.179056 ACGGCGGATAAATGACAGGG 60.179 55.000 13.24 0.00 0.00 4.45
3383 7208 1.485480 TCCCACAAATACGGCGGATAA 59.515 47.619 13.24 0.00 0.00 1.75
3438 7263 1.876714 CAATCCACGTACGCGGGAG 60.877 63.158 26.76 15.14 45.97 4.30
3439 7264 1.669049 ATCAATCCACGTACGCGGGA 61.669 55.000 25.66 25.66 45.97 5.14
3440 7265 0.808453 AATCAATCCACGTACGCGGG 60.808 55.000 21.44 19.54 43.45 6.13
3442 7267 1.656594 TCAAATCAATCCACGTACGCG 59.343 47.619 16.72 3.53 44.93 6.01
3443 7268 3.944422 ATCAAATCAATCCACGTACGC 57.056 42.857 16.72 0.00 0.00 4.42
3444 7269 4.331443 TCCAATCAAATCAATCCACGTACG 59.669 41.667 15.01 15.01 0.00 3.67
3445 7270 5.811399 TCCAATCAAATCAATCCACGTAC 57.189 39.130 0.00 0.00 0.00 3.67
3447 7272 4.522405 TGTTCCAATCAAATCAATCCACGT 59.478 37.500 0.00 0.00 0.00 4.49
3448 7273 5.058149 TGTTCCAATCAAATCAATCCACG 57.942 39.130 0.00 0.00 0.00 4.94
3449 7274 7.727331 TTTTGTTCCAATCAAATCAATCCAC 57.273 32.000 0.00 0.00 35.25 4.02
3453 7278 8.949177 GCCTTATTTTGTTCCAATCAAATCAAT 58.051 29.630 0.00 0.00 35.25 2.57
3455 7280 6.878389 GGCCTTATTTTGTTCCAATCAAATCA 59.122 34.615 0.00 0.00 35.25 2.57
3457 7282 6.179756 GGGCCTTATTTTGTTCCAATCAAAT 58.820 36.000 0.84 0.00 35.25 2.32
3458 7283 5.555966 GGGCCTTATTTTGTTCCAATCAAA 58.444 37.500 0.84 0.00 33.76 2.69
3459 7284 4.322349 CGGGCCTTATTTTGTTCCAATCAA 60.322 41.667 0.84 0.00 0.00 2.57
3463 7288 2.559231 GTCGGGCCTTATTTTGTTCCAA 59.441 45.455 0.84 0.00 0.00 3.53
3464 7289 2.164338 GTCGGGCCTTATTTTGTTCCA 58.836 47.619 0.84 0.00 0.00 3.53
3465 7290 1.475280 GGTCGGGCCTTATTTTGTTCC 59.525 52.381 0.84 0.00 0.00 3.62
3466 7291 1.475280 GGGTCGGGCCTTATTTTGTTC 59.525 52.381 0.84 0.00 37.43 3.18
3467 7292 1.552578 GGGTCGGGCCTTATTTTGTT 58.447 50.000 0.84 0.00 37.43 2.83
3468 7293 0.323999 GGGGTCGGGCCTTATTTTGT 60.324 55.000 0.84 0.00 37.43 2.83
3469 7294 0.323908 TGGGGTCGGGCCTTATTTTG 60.324 55.000 0.84 0.00 37.43 2.44
3470 7295 0.323999 GTGGGGTCGGGCCTTATTTT 60.324 55.000 0.84 0.00 37.43 1.82
3471 7296 1.305287 GTGGGGTCGGGCCTTATTT 59.695 57.895 0.84 0.00 37.43 1.40
3473 7298 3.094498 GGTGGGGTCGGGCCTTAT 61.094 66.667 0.84 0.00 37.43 1.73
3479 7304 1.791695 TTTAAAGGGGTGGGGTCGGG 61.792 60.000 0.00 0.00 0.00 5.14
3480 7305 0.112801 TTTTAAAGGGGTGGGGTCGG 59.887 55.000 0.00 0.00 0.00 4.79
3481 7306 2.097036 GATTTTAAAGGGGTGGGGTCG 58.903 52.381 0.00 0.00 0.00 4.79
3482 7307 3.096852 CTGATTTTAAAGGGGTGGGGTC 58.903 50.000 0.00 0.00 0.00 4.46
3485 7310 3.365472 CTCCTGATTTTAAAGGGGTGGG 58.635 50.000 0.00 0.00 34.08 4.61
3486 7311 3.365472 CCTCCTGATTTTAAAGGGGTGG 58.635 50.000 0.00 0.00 31.45 4.61
3487 7312 3.011257 TCCCTCCTGATTTTAAAGGGGTG 59.989 47.826 5.94 1.42 45.70 4.61
3488 7313 3.269643 CTCCCTCCTGATTTTAAAGGGGT 59.730 47.826 5.94 0.00 45.70 4.95
3489 7314 3.527665 TCTCCCTCCTGATTTTAAAGGGG 59.472 47.826 5.94 0.00 45.70 4.79
3490 7315 4.862641 TCTCCCTCCTGATTTTAAAGGG 57.137 45.455 0.00 0.00 46.82 3.95
3493 7318 9.003145 TCTAATCATCTCCCTCCTGATTTTAAA 57.997 33.333 2.71 0.00 39.60 1.52
3494 7319 8.567198 TCTAATCATCTCCCTCCTGATTTTAA 57.433 34.615 2.71 0.00 39.60 1.52
3495 7320 8.748179 ATCTAATCATCTCCCTCCTGATTTTA 57.252 34.615 2.71 0.00 39.60 1.52
3496 7321 7.645132 ATCTAATCATCTCCCTCCTGATTTT 57.355 36.000 2.71 0.00 39.60 1.82
3498 7323 8.182885 TCTAATCTAATCATCTCCCTCCTGATT 58.817 37.037 0.00 0.00 41.28 2.57
3499 7324 7.717451 TCTAATCTAATCATCTCCCTCCTGAT 58.283 38.462 0.00 0.00 0.00 2.90
3500 7325 7.108667 TCTAATCTAATCATCTCCCTCCTGA 57.891 40.000 0.00 0.00 0.00 3.86
3541 7717 3.074412 CACTTCATCCTACGGCTGTTTT 58.926 45.455 1.99 0.00 0.00 2.43
3544 7720 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
3545 7721 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
3551 7727 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
3556 7732 0.321564 CCATTCGTGCTCCCACTTCA 60.322 55.000 0.00 0.00 39.86 3.02
3559 7735 1.903877 CTCCCATTCGTGCTCCCACT 61.904 60.000 0.00 0.00 39.86 4.00
3562 7738 0.462759 CTTCTCCCATTCGTGCTCCC 60.463 60.000 0.00 0.00 0.00 4.30
3565 7741 0.254178 ATGCTTCTCCCATTCGTGCT 59.746 50.000 0.00 0.00 0.00 4.40
3567 7743 1.019673 CCATGCTTCTCCCATTCGTG 58.980 55.000 0.00 0.00 0.00 4.35
3568 7744 0.107017 CCCATGCTTCTCCCATTCGT 60.107 55.000 0.00 0.00 0.00 3.85
3569 7745 0.820891 CCCCATGCTTCTCCCATTCG 60.821 60.000 0.00 0.00 0.00 3.34
3570 7746 0.552848 TCCCCATGCTTCTCCCATTC 59.447 55.000 0.00 0.00 0.00 2.67
3571 7747 0.554792 CTCCCCATGCTTCTCCCATT 59.445 55.000 0.00 0.00 0.00 3.16
3572 7748 1.358830 CCTCCCCATGCTTCTCCCAT 61.359 60.000 0.00 0.00 0.00 4.00
3573 7749 2.002977 CCTCCCCATGCTTCTCCCA 61.003 63.158 0.00 0.00 0.00 4.37
3576 7752 1.835693 CTCCCTCCCCATGCTTCTC 59.164 63.158 0.00 0.00 0.00 2.87
3577 7753 2.381941 GCTCCCTCCCCATGCTTCT 61.382 63.158 0.00 0.00 0.00 2.85
3579 7755 2.614969 TGCTCCCTCCCCATGCTT 60.615 61.111 0.00 0.00 0.00 3.91
3582 7758 1.565390 TTGTCTGCTCCCTCCCCATG 61.565 60.000 0.00 0.00 0.00 3.66
3583 7759 1.229951 TTGTCTGCTCCCTCCCCAT 60.230 57.895 0.00 0.00 0.00 4.00
3584 7760 1.920325 CTTGTCTGCTCCCTCCCCA 60.920 63.158 0.00 0.00 0.00 4.96
3585 7761 2.993853 CTTGTCTGCTCCCTCCCC 59.006 66.667 0.00 0.00 0.00 4.81
3587 7763 2.270527 GGCTTGTCTGCTCCCTCC 59.729 66.667 0.00 0.00 0.00 4.30
3588 7764 2.125350 CGGCTTGTCTGCTCCCTC 60.125 66.667 0.00 0.00 0.00 4.30
3589 7765 3.710722 CCGGCTTGTCTGCTCCCT 61.711 66.667 0.00 0.00 0.00 4.20
3591 7767 1.522580 GATCCGGCTTGTCTGCTCC 60.523 63.158 0.00 0.00 0.00 4.70
3592 7768 1.522580 GGATCCGGCTTGTCTGCTC 60.523 63.158 0.00 0.00 0.00 4.26
3593 7769 2.586792 GGATCCGGCTTGTCTGCT 59.413 61.111 0.00 0.00 0.00 4.24
3594 7770 2.292794 TACGGATCCGGCTTGTCTGC 62.293 60.000 35.87 0.00 44.69 4.26
3595 7771 0.389391 ATACGGATCCGGCTTGTCTG 59.611 55.000 35.87 7.52 44.69 3.51
3596 7772 1.120530 AATACGGATCCGGCTTGTCT 58.879 50.000 35.87 17.02 44.69 3.41
3597 7773 1.597663 CAAATACGGATCCGGCTTGTC 59.402 52.381 35.87 0.00 44.69 3.18
3601 7777 0.179056 CCACAAATACGGATCCGGCT 60.179 55.000 35.87 20.75 44.69 5.52
3602 7778 1.164041 CCCACAAATACGGATCCGGC 61.164 60.000 35.87 0.00 44.69 6.13
3603 7779 1.164041 GCCCACAAATACGGATCCGG 61.164 60.000 35.87 20.87 44.69 5.14
3604 7780 0.179056 AGCCCACAAATACGGATCCG 60.179 55.000 32.20 32.20 46.03 4.18
3605 7781 2.052782 AAGCCCACAAATACGGATCC 57.947 50.000 0.00 0.00 0.00 3.36
3606 7782 2.479560 GCAAAGCCCACAAATACGGATC 60.480 50.000 0.00 0.00 0.00 3.36
3607 7783 1.476488 GCAAAGCCCACAAATACGGAT 59.524 47.619 0.00 0.00 0.00 4.18
3608 7784 0.885196 GCAAAGCCCACAAATACGGA 59.115 50.000 0.00 0.00 0.00 4.69
3610 7786 2.652941 ATGCAAAGCCCACAAATACG 57.347 45.000 0.00 0.00 0.00 3.06
3611 7787 3.367630 CGAAATGCAAAGCCCACAAATAC 59.632 43.478 0.00 0.00 0.00 1.89
3613 7789 2.415776 CGAAATGCAAAGCCCACAAAT 58.584 42.857 0.00 0.00 0.00 2.32
3614 7790 1.539929 CCGAAATGCAAAGCCCACAAA 60.540 47.619 0.00 0.00 0.00 2.83
3615 7791 0.033228 CCGAAATGCAAAGCCCACAA 59.967 50.000 0.00 0.00 0.00 3.33
3616 7792 1.664873 CCGAAATGCAAAGCCCACA 59.335 52.632 0.00 0.00 0.00 4.17
3617 7793 1.737735 GCCGAAATGCAAAGCCCAC 60.738 57.895 0.00 0.00 0.00 4.61
3618 7794 1.876497 GAGCCGAAATGCAAAGCCCA 61.876 55.000 0.00 0.00 0.00 5.36
3619 7795 1.153765 GAGCCGAAATGCAAAGCCC 60.154 57.895 0.00 0.00 0.00 5.19
3620 7796 1.153765 GGAGCCGAAATGCAAAGCC 60.154 57.895 0.00 0.00 0.00 4.35
3651 7959 0.325602 ACCCGCCTGTCCGAATTAAA 59.674 50.000 0.00 0.00 0.00 1.52
3795 8103 7.332430 ACATGCATGAATTTTGTTCATAACCAG 59.668 33.333 32.75 0.00 37.06 4.00
3809 8153 7.915293 ATTTGAAATGTGACATGCATGAATT 57.085 28.000 32.75 20.65 0.00 2.17
3884 8229 4.944962 TTGGAGCACATTTCTTCATACG 57.055 40.909 0.00 0.00 0.00 3.06
3957 8320 7.004555 TCTCATGACAATTACTAGGTGTTGT 57.995 36.000 8.14 8.14 37.49 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.