Multiple sequence alignment - TraesCS2D01G365800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G365800 chr2D 100.000 2513 0 0 1 2513 470436711 470434199 0.000000e+00 4641
1 TraesCS2D01G365800 chr2D 94.083 507 22 4 1993 2498 118891944 118891445 0.000000e+00 763
2 TraesCS2D01G365800 chr2D 87.633 283 29 4 1712 1990 470525965 470526245 8.670000e-85 324
3 TraesCS2D01G365800 chr2D 85.882 255 36 0 1992 2246 95184472 95184218 3.190000e-69 272
4 TraesCS2D01G365800 chr2D 86.017 236 32 1 1988 2223 633228791 633229025 4.150000e-63 252
5 TraesCS2D01G365800 chr2D 93.750 80 3 2 219 297 387193773 387193695 4.390000e-23 119
6 TraesCS2D01G365800 chr2B 91.826 1101 57 14 484 1558 549388135 549387042 0.000000e+00 1504
7 TraesCS2D01G365800 chr2B 85.570 298 29 11 1700 1990 549386850 549386560 1.460000e-77 300
8 TraesCS2D01G365800 chr2B 87.645 259 27 3 1736 1990 549508332 549508589 1.890000e-76 296
9 TraesCS2D01G365800 chr2B 83.784 185 12 3 308 492 549388327 549388161 2.590000e-35 159
10 TraesCS2D01G365800 chr2A 88.206 1009 46 25 296 1257 612277482 612276500 0.000000e+00 1136
11 TraesCS2D01G365800 chr2A 94.954 218 11 0 1317 1534 612276490 612276273 2.390000e-90 342
12 TraesCS2D01G365800 chr7D 93.536 526 24 6 1990 2513 529476230 529476747 0.000000e+00 774
13 TraesCS2D01G365800 chr7D 91.981 212 15 2 6 215 136876698 136876909 1.890000e-76 296
14 TraesCS2D01G365800 chr7D 90.141 213 15 4 6 215 630614334 630614543 3.190000e-69 272
15 TraesCS2D01G365800 chr7D 84.646 254 36 3 1991 2242 140294273 140294021 1.490000e-62 250
16 TraesCS2D01G365800 chr7D 85.356 239 33 1 1991 2229 626029653 626029417 1.930000e-61 246
17 TraesCS2D01G365800 chr7D 92.857 84 4 2 219 301 500775535 500775453 1.220000e-23 121
18 TraesCS2D01G365800 chr3D 93.117 523 29 3 1992 2513 103678345 103677829 0.000000e+00 760
19 TraesCS2D01G365800 chr3D 92.593 81 4 2 219 298 137982425 137982346 5.680000e-22 115
20 TraesCS2D01G365800 chr5B 89.484 523 24 10 1992 2513 658380503 658380011 1.270000e-177 632
21 TraesCS2D01G365800 chr5B 84.706 255 36 3 1992 2245 52310482 52310230 4.150000e-63 252
22 TraesCS2D01G365800 chr5B 87.156 109 11 3 219 326 554821109 554821003 1.220000e-23 121
23 TraesCS2D01G365800 chr5D 93.269 208 13 1 20 226 543593608 543593401 3.140000e-79 305
24 TraesCS2D01G365800 chr5D 92.941 85 4 2 219 302 454109828 454109745 3.390000e-24 122
25 TraesCS2D01G365800 chr4D 93.204 206 13 1 10 215 41197347 41197143 4.060000e-78 302
26 TraesCS2D01G365800 chr4D 93.750 80 3 2 219 297 49508671 49508593 4.390000e-23 119
27 TraesCS2D01G365800 chr7A 90.741 216 19 1 1 215 725814733 725814948 1.140000e-73 287
28 TraesCS2D01G365800 chr1D 91.038 212 17 2 6 215 349189418 349189207 4.090000e-73 285
29 TraesCS2D01G365800 chr3A 90.610 213 17 2 6 215 642030186 642030398 1.900000e-71 279
30 TraesCS2D01G365800 chr6D 90.141 213 20 1 10 221 110654361 110654149 2.460000e-70 276
31 TraesCS2D01G365800 chr4A 89.498 219 20 2 6 221 164519443 164519225 8.860000e-70 274
32 TraesCS2D01G365800 chr4A 91.765 85 5 2 217 300 651625935 651625852 1.580000e-22 117
33 TraesCS2D01G365800 chrUn 92.683 82 4 2 217 297 86970764 86970684 1.580000e-22 117
34 TraesCS2D01G365800 chr3B 92.593 81 4 2 219 298 201028585 201028506 5.680000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G365800 chr2D 470434199 470436711 2512 True 4641.000000 4641 100.000 1 2513 1 chr2D.!!$R4 2512
1 TraesCS2D01G365800 chr2B 549386560 549388327 1767 True 654.333333 1504 87.060 308 1990 3 chr2B.!!$R1 1682
2 TraesCS2D01G365800 chr2A 612276273 612277482 1209 True 739.000000 1136 91.580 296 1534 2 chr2A.!!$R1 1238
3 TraesCS2D01G365800 chr7D 529476230 529476747 517 False 774.000000 774 93.536 1990 2513 1 chr7D.!!$F2 523
4 TraesCS2D01G365800 chr3D 103677829 103678345 516 True 760.000000 760 93.117 1992 2513 1 chr3D.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.026803 CGCGCTGAACTAGATTTGCC 59.973 55.0 5.56 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1664 1810 0.02877 TTTGAACGTCTTGCCAAGCG 59.971 50.0 16.1 16.1 35.3 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.373116 GGGGTGAGTTGCGAGCGA 62.373 66.667 0.00 0.00 0.00 4.93
35 36 2.811317 GGGTGAGTTGCGAGCGAG 60.811 66.667 0.00 0.00 0.00 5.03
36 37 3.482783 GGTGAGTTGCGAGCGAGC 61.483 66.667 0.00 0.00 37.71 5.03
37 38 3.832171 GTGAGTTGCGAGCGAGCG 61.832 66.667 0.00 0.00 40.67 5.03
68 69 2.951227 GCAGCAAATAAGCGGCGC 60.951 61.111 26.86 26.86 45.03 6.53
69 70 2.648724 CAGCAAATAAGCGGCGCG 60.649 61.111 27.59 12.27 40.15 6.86
70 71 3.124921 AGCAAATAAGCGGCGCGT 61.125 55.556 27.59 26.43 40.15 6.01
71 72 2.944049 GCAAATAAGCGGCGCGTG 60.944 61.111 29.63 21.13 0.00 5.34
72 73 2.781957 CAAATAAGCGGCGCGTGA 59.218 55.556 29.63 17.65 0.00 4.35
73 74 1.351707 CAAATAAGCGGCGCGTGAT 59.648 52.632 29.63 19.12 0.00 3.06
74 75 0.925267 CAAATAAGCGGCGCGTGATG 60.925 55.000 29.63 19.97 0.00 3.07
75 76 2.047151 AAATAAGCGGCGCGTGATGG 62.047 55.000 29.63 0.00 0.00 3.51
76 77 2.916502 AATAAGCGGCGCGTGATGGA 62.917 55.000 29.63 10.27 0.00 3.41
80 81 3.118454 CGGCGCGTGATGGAGTTT 61.118 61.111 8.43 0.00 0.00 2.66
81 82 2.785258 GGCGCGTGATGGAGTTTC 59.215 61.111 8.43 0.00 0.00 2.78
82 83 2.395690 GCGCGTGATGGAGTTTCG 59.604 61.111 8.43 0.00 0.00 3.46
83 84 3.081133 CGCGTGATGGAGTTTCGG 58.919 61.111 0.00 0.00 0.00 4.30
84 85 2.785258 GCGTGATGGAGTTTCGGC 59.215 61.111 0.00 0.00 0.00 5.54
85 86 2.750888 GCGTGATGGAGTTTCGGCC 61.751 63.158 0.00 0.00 0.00 6.13
86 87 2.106683 CGTGATGGAGTTTCGGCCC 61.107 63.158 0.00 0.00 0.00 5.80
87 88 2.106683 GTGATGGAGTTTCGGCCCG 61.107 63.158 0.00 0.00 0.00 6.13
88 89 3.202706 GATGGAGTTTCGGCCCGC 61.203 66.667 0.00 0.00 0.00 6.13
101 102 4.492160 CCCGCGCGCTGAACTAGA 62.492 66.667 30.48 0.00 0.00 2.43
102 103 2.278857 CCGCGCGCTGAACTAGAT 60.279 61.111 30.48 0.00 0.00 1.98
103 104 1.878522 CCGCGCGCTGAACTAGATT 60.879 57.895 30.48 0.00 0.00 2.40
104 105 1.421410 CCGCGCGCTGAACTAGATTT 61.421 55.000 30.48 0.00 0.00 2.17
105 106 0.314578 CGCGCGCTGAACTAGATTTG 60.315 55.000 30.48 4.24 0.00 2.32
106 107 0.587489 GCGCGCTGAACTAGATTTGC 60.587 55.000 26.67 0.00 0.00 3.68
107 108 0.026803 CGCGCTGAACTAGATTTGCC 59.973 55.000 5.56 0.00 0.00 4.52
108 109 0.026803 GCGCTGAACTAGATTTGCCG 59.973 55.000 0.00 0.00 0.00 5.69
109 110 0.026803 CGCTGAACTAGATTTGCCGC 59.973 55.000 0.00 0.00 0.00 6.53
110 111 0.026803 GCTGAACTAGATTTGCCGCG 59.973 55.000 0.00 0.00 0.00 6.46
111 112 0.026803 CTGAACTAGATTTGCCGCGC 59.973 55.000 0.00 0.00 0.00 6.86
112 113 1.012234 GAACTAGATTTGCCGCGCG 60.012 57.895 25.67 25.67 0.00 6.86
113 114 2.949700 GAACTAGATTTGCCGCGCGC 62.950 60.000 27.36 23.91 38.31 6.86
114 115 4.633596 CTAGATTTGCCGCGCGCG 62.634 66.667 43.73 43.73 42.08 6.86
144 145 3.866582 GCCCGCTGGAGCCACTAT 61.867 66.667 0.00 0.00 37.91 2.12
145 146 2.507854 GCCCGCTGGAGCCACTATA 61.508 63.158 0.00 0.00 37.91 1.31
146 147 1.367840 CCCGCTGGAGCCACTATAC 59.632 63.158 0.00 0.00 37.91 1.47
147 148 1.367840 CCGCTGGAGCCACTATACC 59.632 63.158 0.00 0.00 37.91 2.73
148 149 1.007271 CGCTGGAGCCACTATACCG 60.007 63.158 0.00 0.00 37.91 4.02
149 150 1.367840 GCTGGAGCCACTATACCGG 59.632 63.158 0.00 0.00 34.31 5.28
150 151 1.400530 GCTGGAGCCACTATACCGGT 61.401 60.000 13.98 13.98 34.31 5.28
151 152 1.120530 CTGGAGCCACTATACCGGTT 58.879 55.000 15.04 3.05 0.00 4.44
152 153 0.828022 TGGAGCCACTATACCGGTTG 59.172 55.000 15.04 4.29 0.00 3.77
153 154 0.532196 GGAGCCACTATACCGGTTGC 60.532 60.000 15.04 6.61 0.00 4.17
154 155 0.874607 GAGCCACTATACCGGTTGCG 60.875 60.000 15.04 3.45 31.82 4.85
155 156 2.531376 GCCACTATACCGGTTGCGC 61.531 63.158 15.04 7.06 0.00 6.09
156 157 2.235016 CCACTATACCGGTTGCGCG 61.235 63.158 15.04 0.00 0.00 6.86
157 158 2.584143 ACTATACCGGTTGCGCGC 60.584 61.111 27.26 27.26 0.00 6.86
158 159 3.688330 CTATACCGGTTGCGCGCG 61.688 66.667 28.44 28.44 0.00 6.86
172 173 3.876198 CGCGCGCTAAAATGGGCT 61.876 61.111 30.48 0.00 42.62 5.19
173 174 2.530497 CGCGCGCTAAAATGGGCTA 61.530 57.895 30.48 0.00 42.62 3.93
174 175 1.841663 CGCGCGCTAAAATGGGCTAT 61.842 55.000 30.48 0.00 42.62 2.97
175 176 0.310854 GCGCGCTAAAATGGGCTATT 59.689 50.000 26.67 0.00 42.62 1.73
176 177 1.269051 GCGCGCTAAAATGGGCTATTT 60.269 47.619 26.67 2.64 42.62 1.40
178 179 2.788786 CGCGCTAAAATGGGCTATTTTG 59.211 45.455 25.95 17.93 45.90 2.44
179 180 2.539688 GCGCTAAAATGGGCTATTTTGC 59.460 45.455 25.95 23.47 45.90 3.68
180 181 2.788786 CGCTAAAATGGGCTATTTTGCG 59.211 45.455 30.02 30.02 45.90 4.85
181 182 3.123050 GCTAAAATGGGCTATTTTGCGG 58.877 45.455 25.95 17.70 45.90 5.69
182 183 2.022764 AAAATGGGCTATTTTGCGGC 57.977 45.000 19.09 0.00 44.98 6.53
183 184 0.179113 AAATGGGCTATTTTGCGGCG 60.179 50.000 0.51 0.51 35.47 6.46
184 185 1.319614 AATGGGCTATTTTGCGGCGT 61.320 50.000 9.37 0.00 0.00 5.68
185 186 2.003658 ATGGGCTATTTTGCGGCGTG 62.004 55.000 9.37 0.00 0.00 5.34
186 187 2.102161 GGCTATTTTGCGGCGTGG 59.898 61.111 9.37 0.00 0.00 4.94
187 188 2.579518 GCTATTTTGCGGCGTGGC 60.580 61.111 9.37 0.00 0.00 5.01
188 189 2.277247 CTATTTTGCGGCGTGGCG 60.277 61.111 9.37 11.80 35.06 5.69
199 200 2.769617 CGTGGCGCTAGTTTGACG 59.230 61.111 7.64 0.00 0.00 4.35
203 204 4.500568 GCGCTAGTTTGACGCGGC 62.501 66.667 12.47 8.67 46.31 6.53
204 205 2.809601 CGCTAGTTTGACGCGGCT 60.810 61.111 15.80 4.02 42.88 5.52
205 206 2.778679 GCTAGTTTGACGCGGCTG 59.221 61.111 15.80 0.00 0.00 4.85
206 207 2.027625 GCTAGTTTGACGCGGCTGT 61.028 57.895 15.80 0.00 0.00 4.40
207 208 1.566018 GCTAGTTTGACGCGGCTGTT 61.566 55.000 15.80 0.00 0.00 3.16
208 209 0.163788 CTAGTTTGACGCGGCTGTTG 59.836 55.000 15.80 0.00 0.00 3.33
209 210 0.249531 TAGTTTGACGCGGCTGTTGA 60.250 50.000 15.80 0.00 0.00 3.18
210 211 1.092921 AGTTTGACGCGGCTGTTGAA 61.093 50.000 15.80 0.00 0.00 2.69
211 212 0.657368 GTTTGACGCGGCTGTTGAAG 60.657 55.000 15.80 0.00 0.00 3.02
212 213 0.812014 TTTGACGCGGCTGTTGAAGA 60.812 50.000 15.80 0.00 0.00 2.87
213 214 0.602638 TTGACGCGGCTGTTGAAGAT 60.603 50.000 15.80 0.00 0.00 2.40
214 215 1.291184 TGACGCGGCTGTTGAAGATG 61.291 55.000 15.80 0.00 0.00 2.90
215 216 1.291877 GACGCGGCTGTTGAAGATGT 61.292 55.000 12.47 0.00 0.00 3.06
216 217 0.884704 ACGCGGCTGTTGAAGATGTT 60.885 50.000 12.47 0.00 0.00 2.71
217 218 0.238289 CGCGGCTGTTGAAGATGTTT 59.762 50.000 0.00 0.00 0.00 2.83
218 219 1.334960 CGCGGCTGTTGAAGATGTTTT 60.335 47.619 0.00 0.00 0.00 2.43
219 220 2.095969 CGCGGCTGTTGAAGATGTTTTA 60.096 45.455 0.00 0.00 0.00 1.52
220 221 3.608241 CGCGGCTGTTGAAGATGTTTTAA 60.608 43.478 0.00 0.00 0.00 1.52
221 222 4.295051 GCGGCTGTTGAAGATGTTTTAAA 58.705 39.130 0.00 0.00 0.00 1.52
222 223 4.382754 GCGGCTGTTGAAGATGTTTTAAAG 59.617 41.667 0.00 0.00 0.00 1.85
223 224 5.519722 CGGCTGTTGAAGATGTTTTAAAGT 58.480 37.500 0.00 0.00 0.00 2.66
224 225 6.664515 CGGCTGTTGAAGATGTTTTAAAGTA 58.335 36.000 0.00 0.00 0.00 2.24
225 226 7.305474 CGGCTGTTGAAGATGTTTTAAAGTAT 58.695 34.615 0.00 0.00 0.00 2.12
226 227 7.271223 CGGCTGTTGAAGATGTTTTAAAGTATG 59.729 37.037 0.00 0.00 0.00 2.39
227 228 8.082242 GGCTGTTGAAGATGTTTTAAAGTATGT 58.918 33.333 0.00 0.00 0.00 2.29
228 229 9.118236 GCTGTTGAAGATGTTTTAAAGTATGTC 57.882 33.333 0.00 0.00 0.00 3.06
256 257 5.707242 ACATCCGTATGTAGTCCATAGTG 57.293 43.478 0.00 0.00 44.66 2.74
257 258 4.523173 ACATCCGTATGTAGTCCATAGTGG 59.477 45.833 0.00 0.00 44.66 4.00
258 259 4.442401 TCCGTATGTAGTCCATAGTGGA 57.558 45.455 0.00 0.00 45.98 4.02
259 260 7.143487 ACATCCGTATGTAGTCCATAGTGGAA 61.143 42.308 0.00 0.00 45.76 3.53
260 261 8.401784 ACATCCGTATGTAGTCCATAGTGGAAT 61.402 40.741 4.27 4.27 45.76 3.01
272 273 7.979786 TCCATAGTGGAATCTCTAAAAGACT 57.020 36.000 0.00 0.00 45.00 3.24
273 274 8.380742 TCCATAGTGGAATCTCTAAAAGACTT 57.619 34.615 0.00 0.00 45.00 3.01
274 275 8.260818 TCCATAGTGGAATCTCTAAAAGACTTG 58.739 37.037 0.00 0.00 45.00 3.16
275 276 8.043710 CCATAGTGGAATCTCTAAAAGACTTGT 58.956 37.037 0.00 0.00 40.96 3.16
287 288 9.382244 CTCTAAAAGACTTGTATTTTTGGAACG 57.618 33.333 10.65 0.00 33.09 3.95
288 289 8.347035 TCTAAAAGACTTGTATTTTTGGAACGG 58.653 33.333 10.65 0.00 31.31 4.44
289 290 6.702716 AAAGACTTGTATTTTTGGAACGGA 57.297 33.333 0.00 0.00 0.00 4.69
290 291 5.941948 AGACTTGTATTTTTGGAACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
291 292 4.760204 AGACTTGTATTTTTGGAACGGAGG 59.240 41.667 0.00 0.00 0.00 4.30
292 293 3.824443 ACTTGTATTTTTGGAACGGAGGG 59.176 43.478 0.00 0.00 0.00 4.30
293 294 3.791953 TGTATTTTTGGAACGGAGGGA 57.208 42.857 0.00 0.00 0.00 4.20
294 295 4.101645 TGTATTTTTGGAACGGAGGGAA 57.898 40.909 0.00 0.00 0.00 3.97
295 296 4.668636 TGTATTTTTGGAACGGAGGGAAT 58.331 39.130 0.00 0.00 0.00 3.01
296 297 5.817784 TGTATTTTTGGAACGGAGGGAATA 58.182 37.500 0.00 0.00 0.00 1.75
297 298 5.648960 TGTATTTTTGGAACGGAGGGAATAC 59.351 40.000 0.00 0.00 32.30 1.89
298 299 3.791953 TTTTGGAACGGAGGGAATACA 57.208 42.857 0.00 0.00 0.00 2.29
299 300 3.791953 TTTGGAACGGAGGGAATACAA 57.208 42.857 0.00 0.00 0.00 2.41
349 350 3.573110 GGCTACCTCTATACATCGTTGGT 59.427 47.826 0.00 0.00 0.00 3.67
361 362 1.164411 TCGTTGGTTGCATCATGGAC 58.836 50.000 0.00 0.00 0.00 4.02
379 380 2.480416 GGACGATGACACCTCAAGCTAG 60.480 54.545 0.00 0.00 0.00 3.42
380 381 2.164624 GACGATGACACCTCAAGCTAGT 59.835 50.000 0.00 0.00 0.00 2.57
382 383 3.128938 ACGATGACACCTCAAGCTAGTAC 59.871 47.826 0.00 0.00 0.00 2.73
383 384 3.378742 CGATGACACCTCAAGCTAGTACT 59.621 47.826 0.00 0.00 0.00 2.73
384 385 4.496673 CGATGACACCTCAAGCTAGTACTC 60.497 50.000 0.00 0.00 0.00 2.59
385 386 3.090037 TGACACCTCAAGCTAGTACTCC 58.910 50.000 0.00 0.00 0.00 3.85
386 387 2.093106 ACACCTCAAGCTAGTACTCCG 58.907 52.381 0.00 0.00 0.00 4.63
387 388 2.093106 CACCTCAAGCTAGTACTCCGT 58.907 52.381 0.00 0.00 0.00 4.69
388 389 3.276857 CACCTCAAGCTAGTACTCCGTA 58.723 50.000 0.00 0.00 0.00 4.02
389 390 3.065095 CACCTCAAGCTAGTACTCCGTAC 59.935 52.174 0.00 0.00 39.10 3.67
390 391 3.276857 CCTCAAGCTAGTACTCCGTACA 58.723 50.000 0.00 0.00 41.03 2.90
391 392 3.693085 CCTCAAGCTAGTACTCCGTACAA 59.307 47.826 0.00 0.00 41.03 2.41
392 393 4.201930 CCTCAAGCTAGTACTCCGTACAAG 60.202 50.000 0.00 0.00 41.03 3.16
393 394 4.582869 TCAAGCTAGTACTCCGTACAAGA 58.417 43.478 0.00 0.00 41.03 3.02
394 395 4.634883 TCAAGCTAGTACTCCGTACAAGAG 59.365 45.833 0.00 8.08 41.03 2.85
395 396 4.484537 AGCTAGTACTCCGTACAAGAGA 57.515 45.455 15.03 0.00 41.03 3.10
396 397 4.444536 AGCTAGTACTCCGTACAAGAGAG 58.555 47.826 15.03 7.16 41.03 3.20
397 398 4.161942 AGCTAGTACTCCGTACAAGAGAGA 59.838 45.833 15.03 2.23 41.03 3.10
398 399 4.874966 GCTAGTACTCCGTACAAGAGAGAA 59.125 45.833 15.03 0.38 41.03 2.87
399 400 5.006941 GCTAGTACTCCGTACAAGAGAGAAG 59.993 48.000 15.03 8.52 41.03 2.85
400 401 4.909001 AGTACTCCGTACAAGAGAGAAGT 58.091 43.478 15.03 2.92 41.03 3.01
420 421 2.949451 AGAGAACTGGACATACGCTG 57.051 50.000 0.00 0.00 0.00 5.18
492 527 2.029470 CCTTCACACACACTCTCTCTCC 60.029 54.545 0.00 0.00 0.00 3.71
508 543 4.796231 CCGCGGAGAGGGACGTTG 62.796 72.222 24.07 0.00 46.30 4.10
607 642 2.949451 ACAAGTCGCAGAGGATACAG 57.051 50.000 0.00 0.00 36.95 2.74
694 729 4.581868 TGACAAGATGCATCTGATGAACA 58.418 39.130 29.34 22.62 37.19 3.18
788 823 5.467735 ACCAACAAAATGTTCTACGGAGTAC 59.532 40.000 0.00 0.00 39.61 2.73
824 859 8.649591 AGCTGATCACTCTGTATTTTGATAGAT 58.350 33.333 0.00 0.00 0.00 1.98
827 862 9.755804 TGATCACTCTGTATTTTGATAGATCAC 57.244 33.333 0.00 0.00 36.36 3.06
837 897 3.577805 TGATAGATCACGGTCCAGAGA 57.422 47.619 0.00 0.00 0.00 3.10
839 899 3.885901 TGATAGATCACGGTCCAGAGAAG 59.114 47.826 0.00 0.00 0.00 2.85
840 900 1.479709 AGATCACGGTCCAGAGAAGG 58.520 55.000 0.00 0.00 0.00 3.46
842 902 0.978146 ATCACGGTCCAGAGAAGGGG 60.978 60.000 0.00 0.00 0.00 4.79
843 903 3.003763 ACGGTCCAGAGAAGGGGC 61.004 66.667 0.00 0.00 0.00 5.80
844 904 3.003173 CGGTCCAGAGAAGGGGCA 61.003 66.667 0.00 0.00 0.00 5.36
845 905 2.592993 CGGTCCAGAGAAGGGGCAA 61.593 63.158 0.00 0.00 0.00 4.52
846 906 1.002011 GGTCCAGAGAAGGGGCAAC 60.002 63.158 0.00 0.00 0.00 4.17
870 935 5.750547 CAGAAGAACAAAAAGAAGAAAGCCC 59.249 40.000 0.00 0.00 0.00 5.19
992 1065 2.435693 CCACCCCATCTCCGTCTCC 61.436 68.421 0.00 0.00 0.00 3.71
1053 1130 0.302890 GCGTGCTGATCAAATCTCCG 59.697 55.000 0.00 0.00 0.00 4.63
1074 1151 0.877649 CGCCATGGACGATCTCTTGG 60.878 60.000 18.40 0.32 0.00 3.61
1077 1154 1.536922 CCATGGACGATCTCTTGGACG 60.537 57.143 5.56 0.00 0.00 4.79
1179 1256 3.406682 GCAGAAAGCCATGGAAACG 57.593 52.632 18.40 0.00 37.23 3.60
1204 1281 5.011090 TGCAGACATCTATGGTGAAGTAC 57.989 43.478 0.00 0.00 0.00 2.73
1205 1282 4.711846 TGCAGACATCTATGGTGAAGTACT 59.288 41.667 0.00 0.00 0.00 2.73
1206 1283 5.891551 TGCAGACATCTATGGTGAAGTACTA 59.108 40.000 0.00 0.00 0.00 1.82
1212 1289 8.362464 ACATCTATGGTGAAGTACTAACTTGA 57.638 34.615 0.00 0.00 46.09 3.02
1220 1297 6.127403 GTGAAGTACTAACTTGAACTTTGCG 58.873 40.000 0.00 0.00 46.09 4.85
1248 1325 5.869344 GTGTTCCTTTTTCTTTTCAGCTTGT 59.131 36.000 0.00 0.00 0.00 3.16
1265 1342 3.665871 GCTTGTTTCTTCATCTGTTTCGC 59.334 43.478 0.00 0.00 0.00 4.70
1308 1385 2.275466 AGTATTAGTGCCCAAGGTGGT 58.725 47.619 0.00 0.00 35.17 4.16
1344 1421 3.465742 TGACTATGATCTGAAGCAGGC 57.534 47.619 0.00 0.00 31.51 4.85
1353 1430 0.942962 CTGAAGCAGGCATCGATTCC 59.057 55.000 5.89 5.89 0.00 3.01
1524 1601 6.231211 GGAGAAGAAGTGATCAAACTTGGTA 58.769 40.000 12.74 0.00 40.48 3.25
1526 1603 7.065204 GGAGAAGAAGTGATCAAACTTGGTATC 59.935 40.741 12.74 4.36 40.48 2.24
1541 1619 6.402222 ACTTGGTATCTCTGTTCATGTTCTC 58.598 40.000 0.00 0.00 0.00 2.87
1546 1624 3.510459 TCTCTGTTCATGTTCTCTCCCA 58.490 45.455 0.00 0.00 0.00 4.37
1548 1626 4.081254 TCTCTGTTCATGTTCTCTCCCATG 60.081 45.833 0.00 0.00 39.82 3.66
1558 1636 5.471424 TGTTCTCTCCCATGGATATCTCTT 58.529 41.667 15.22 0.00 0.00 2.85
1559 1637 5.306419 TGTTCTCTCCCATGGATATCTCTTG 59.694 44.000 15.22 0.00 0.00 3.02
1561 1639 5.471424 TCTCTCCCATGGATATCTCTTGTT 58.529 41.667 15.22 0.00 0.00 2.83
1562 1640 6.624297 TCTCTCCCATGGATATCTCTTGTTA 58.376 40.000 15.22 0.00 0.00 2.41
1563 1641 6.723515 TCTCTCCCATGGATATCTCTTGTTAG 59.276 42.308 15.22 0.00 0.00 2.34
1566 1680 7.348274 TCTCCCATGGATATCTCTTGTTAGTTT 59.652 37.037 15.22 0.00 0.00 2.66
1593 1707 6.982852 GCTCTGTAGCCTATGTTCAGTTATA 58.017 40.000 0.00 0.00 43.40 0.98
1598 1712 6.557253 TGTAGCCTATGTTCAGTTATATGGGT 59.443 38.462 0.00 0.00 0.00 4.51
1599 1713 7.731235 TGTAGCCTATGTTCAGTTATATGGGTA 59.269 37.037 0.00 0.00 0.00 3.69
1600 1714 7.814693 AGCCTATGTTCAGTTATATGGGTAT 57.185 36.000 0.00 0.00 0.00 2.73
1601 1715 8.219660 AGCCTATGTTCAGTTATATGGGTATT 57.780 34.615 0.00 0.00 0.00 1.89
1603 1717 8.100791 GCCTATGTTCAGTTATATGGGTATTCA 58.899 37.037 0.00 0.00 0.00 2.57
1605 1719 9.658799 CTATGTTCAGTTATATGGGTATTCAGG 57.341 37.037 0.00 0.00 0.00 3.86
1620 1766 6.712547 GGGTATTCAGGATTTAATCAGAGGTG 59.287 42.308 7.29 0.00 0.00 4.00
1626 1772 7.405292 TCAGGATTTAATCAGAGGTGAAATGT 58.595 34.615 7.29 0.00 35.88 2.71
1635 1781 4.012374 CAGAGGTGAAATGTTACCTGCAT 58.988 43.478 3.58 0.00 46.92 3.96
1638 1784 5.648092 AGAGGTGAAATGTTACCTGCATAAC 59.352 40.000 3.58 3.67 46.92 1.89
1641 1787 8.014862 AGGTGAAATGTTACCTGCATAACTGC 62.015 42.308 0.00 0.00 45.30 4.40
1652 1798 3.494045 GCATAACTGCTCACCTTTTCC 57.506 47.619 0.00 0.00 45.32 3.13
1653 1799 2.164422 GCATAACTGCTCACCTTTTCCC 59.836 50.000 0.00 0.00 45.32 3.97
1655 1801 4.843728 CATAACTGCTCACCTTTTCCCTA 58.156 43.478 0.00 0.00 0.00 3.53
1656 1802 5.440610 CATAACTGCTCACCTTTTCCCTAT 58.559 41.667 0.00 0.00 0.00 2.57
1657 1803 3.356529 ACTGCTCACCTTTTCCCTATG 57.643 47.619 0.00 0.00 0.00 2.23
1659 1805 3.274288 CTGCTCACCTTTTCCCTATGAC 58.726 50.000 0.00 0.00 0.00 3.06
1660 1806 2.912956 TGCTCACCTTTTCCCTATGACT 59.087 45.455 0.00 0.00 0.00 3.41
1661 1807 4.101114 TGCTCACCTTTTCCCTATGACTA 58.899 43.478 0.00 0.00 0.00 2.59
1663 1809 4.162509 GCTCACCTTTTCCCTATGACTACT 59.837 45.833 0.00 0.00 0.00 2.57
1664 1810 5.682730 GCTCACCTTTTCCCTATGACTACTC 60.683 48.000 0.00 0.00 0.00 2.59
1666 1812 3.132467 ACCTTTTCCCTATGACTACTCGC 59.868 47.826 0.00 0.00 0.00 5.03
1668 1814 4.141914 CCTTTTCCCTATGACTACTCGCTT 60.142 45.833 0.00 0.00 0.00 4.68
1669 1815 4.386867 TTTCCCTATGACTACTCGCTTG 57.613 45.455 0.00 0.00 0.00 4.01
1671 1817 1.269831 CCCTATGACTACTCGCTTGGC 60.270 57.143 0.00 0.00 0.00 4.52
1672 1818 1.409064 CCTATGACTACTCGCTTGGCA 59.591 52.381 0.00 0.00 0.00 4.92
1673 1819 2.159099 CCTATGACTACTCGCTTGGCAA 60.159 50.000 0.00 0.00 0.00 4.52
1674 1820 2.015736 ATGACTACTCGCTTGGCAAG 57.984 50.000 22.75 22.75 0.00 4.01
1675 1821 0.966179 TGACTACTCGCTTGGCAAGA 59.034 50.000 30.45 10.18 0.00 3.02
1676 1822 1.336887 TGACTACTCGCTTGGCAAGAC 60.337 52.381 30.45 19.28 0.00 3.01
1678 1824 0.388649 CTACTCGCTTGGCAAGACGT 60.389 55.000 30.45 22.31 32.51 4.34
1679 1825 0.032952 TACTCGCTTGGCAAGACGTT 59.967 50.000 30.45 21.94 32.51 3.99
1680 1826 1.222115 ACTCGCTTGGCAAGACGTTC 61.222 55.000 30.45 11.28 32.51 3.95
1681 1827 1.221466 CTCGCTTGGCAAGACGTTCA 61.221 55.000 30.45 15.15 32.51 3.18
1682 1828 0.812014 TCGCTTGGCAAGACGTTCAA 60.812 50.000 30.45 13.63 32.51 2.69
1684 1830 1.334960 CGCTTGGCAAGACGTTCAAAT 60.335 47.619 30.45 0.00 0.00 2.32
1685 1831 2.319472 GCTTGGCAAGACGTTCAAATC 58.681 47.619 30.45 4.96 0.00 2.17
1686 1832 2.922335 GCTTGGCAAGACGTTCAAATCC 60.922 50.000 30.45 4.44 0.00 3.01
1688 1834 2.582052 TGGCAAGACGTTCAAATCCTT 58.418 42.857 0.00 0.00 0.00 3.36
1689 1835 3.745799 TGGCAAGACGTTCAAATCCTTA 58.254 40.909 0.00 0.00 0.00 2.69
1690 1836 3.500680 TGGCAAGACGTTCAAATCCTTAC 59.499 43.478 0.00 0.00 0.00 2.34
1691 1837 3.751698 GGCAAGACGTTCAAATCCTTACT 59.248 43.478 0.00 0.00 0.00 2.24
1692 1838 4.933400 GGCAAGACGTTCAAATCCTTACTA 59.067 41.667 0.00 0.00 0.00 1.82
1693 1839 5.585047 GGCAAGACGTTCAAATCCTTACTAT 59.415 40.000 0.00 0.00 0.00 2.12
1694 1840 6.238130 GGCAAGACGTTCAAATCCTTACTATC 60.238 42.308 0.00 0.00 0.00 2.08
1695 1841 6.312918 GCAAGACGTTCAAATCCTTACTATCA 59.687 38.462 0.00 0.00 0.00 2.15
1696 1842 7.464710 GCAAGACGTTCAAATCCTTACTATCAG 60.465 40.741 0.00 0.00 0.00 2.90
1697 1843 6.043411 AGACGTTCAAATCCTTACTATCAGC 58.957 40.000 0.00 0.00 0.00 4.26
1698 1844 4.804139 ACGTTCAAATCCTTACTATCAGCG 59.196 41.667 0.00 0.00 0.00 5.18
1699 1845 4.804139 CGTTCAAATCCTTACTATCAGCGT 59.196 41.667 0.00 0.00 0.00 5.07
1700 1846 5.276395 CGTTCAAATCCTTACTATCAGCGTG 60.276 44.000 0.00 0.00 0.00 5.34
1701 1847 5.592104 TCAAATCCTTACTATCAGCGTGA 57.408 39.130 0.00 0.00 0.00 4.35
1702 1848 5.972935 TCAAATCCTTACTATCAGCGTGAA 58.027 37.500 0.00 0.00 0.00 3.18
1703 1849 5.810587 TCAAATCCTTACTATCAGCGTGAAC 59.189 40.000 0.00 0.00 0.00 3.18
1704 1850 5.339008 AATCCTTACTATCAGCGTGAACA 57.661 39.130 0.00 0.00 0.00 3.18
1705 1851 4.794278 TCCTTACTATCAGCGTGAACAA 57.206 40.909 0.00 0.00 0.00 2.83
1706 1852 5.339008 TCCTTACTATCAGCGTGAACAAT 57.661 39.130 0.00 0.00 0.00 2.71
1707 1853 5.730550 TCCTTACTATCAGCGTGAACAATT 58.269 37.500 0.00 0.00 0.00 2.32
1708 1854 6.869695 TCCTTACTATCAGCGTGAACAATTA 58.130 36.000 0.00 0.00 0.00 1.40
1709 1855 7.497595 TCCTTACTATCAGCGTGAACAATTAT 58.502 34.615 0.00 0.00 0.00 1.28
1710 1856 7.438160 TCCTTACTATCAGCGTGAACAATTATG 59.562 37.037 0.00 0.00 0.00 1.90
1726 1872 5.071653 ACAATTATGCAGGGTTTCCAACTTT 59.928 36.000 0.00 0.00 34.83 2.66
1729 1875 2.183679 TGCAGGGTTTCCAACTTTGTT 58.816 42.857 0.00 0.00 34.83 2.83
1730 1876 3.366396 TGCAGGGTTTCCAACTTTGTTA 58.634 40.909 0.00 0.00 34.83 2.41
1733 1879 4.739436 GCAGGGTTTCCAACTTTGTTAAGG 60.739 45.833 0.00 0.00 33.75 2.69
1742 1889 5.484290 TCCAACTTTGTTAAGGGTTTTTGGA 59.516 36.000 0.00 0.00 38.33 3.53
1762 1909 9.573166 TTTTGGATCAGTTTCTCTTCAAGATAA 57.427 29.630 0.00 0.00 32.82 1.75
1763 1910 9.573166 TTTGGATCAGTTTCTCTTCAAGATAAA 57.427 29.630 0.00 0.00 32.82 1.40
1764 1911 8.783833 TGGATCAGTTTCTCTTCAAGATAAAG 57.216 34.615 0.00 0.00 32.82 1.85
1765 1912 8.378565 TGGATCAGTTTCTCTTCAAGATAAAGT 58.621 33.333 0.00 0.00 32.82 2.66
1766 1913 8.663911 GGATCAGTTTCTCTTCAAGATAAAGTG 58.336 37.037 19.96 19.96 40.34 3.16
1768 1915 7.220030 TCAGTTTCTCTTCAAGATAAAGTGCT 58.780 34.615 20.72 5.17 39.55 4.40
1770 1917 6.652900 AGTTTCTCTTCAAGATAAAGTGCTCC 59.347 38.462 5.10 0.00 32.82 4.70
1771 1918 5.091261 TCTCTTCAAGATAAAGTGCTCCC 57.909 43.478 0.00 0.00 0.00 4.30
1773 1920 5.013079 TCTCTTCAAGATAAAGTGCTCCCAA 59.987 40.000 0.00 0.00 0.00 4.12
1774 1921 5.630121 TCTTCAAGATAAAGTGCTCCCAAA 58.370 37.500 0.00 0.00 0.00 3.28
1776 1923 4.335416 TCAAGATAAAGTGCTCCCAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
1777 1924 4.082125 CAAGATAAAGTGCTCCCAAAGGT 58.918 43.478 0.00 0.00 0.00 3.50
1778 1925 3.690460 AGATAAAGTGCTCCCAAAGGTG 58.310 45.455 0.00 0.00 0.00 4.00
1779 1926 3.074538 AGATAAAGTGCTCCCAAAGGTGT 59.925 43.478 0.00 0.00 0.00 4.16
1780 1927 1.402787 AAAGTGCTCCCAAAGGTGTG 58.597 50.000 0.00 0.00 0.00 3.82
1781 1928 0.258774 AAGTGCTCCCAAAGGTGTGT 59.741 50.000 0.00 0.00 0.00 3.72
1795 1942 4.292186 AGGTGTGTAAATGCAGAGACAT 57.708 40.909 0.00 0.00 0.00 3.06
1801 1948 5.869344 TGTGTAAATGCAGAGACATAGACAC 59.131 40.000 11.82 11.82 41.55 3.67
1808 1955 5.173664 TGCAGAGACATAGACACAGATTTG 58.826 41.667 0.00 0.00 0.00 2.32
1809 1956 4.033817 GCAGAGACATAGACACAGATTTGC 59.966 45.833 0.00 0.00 0.00 3.68
1817 1964 3.466836 AGACACAGATTTGCGAACAGAA 58.533 40.909 0.00 0.00 0.00 3.02
1820 1967 5.120830 AGACACAGATTTGCGAACAGAATAC 59.879 40.000 0.00 0.00 0.00 1.89
1826 1973 6.193410 CAGATTTGCGAACAGAATACGAAATG 59.807 38.462 0.00 0.00 0.00 2.32
1830 1977 3.541516 GCGAACAGAATACGAAATGACCG 60.542 47.826 0.00 0.00 0.00 4.79
1849 1996 4.117685 ACCGCCGAATTACAAACTAGATC 58.882 43.478 0.00 0.00 0.00 2.75
1850 1997 4.116961 CCGCCGAATTACAAACTAGATCA 58.883 43.478 0.00 0.00 0.00 2.92
1856 2003 9.155975 GCCGAATTACAAACTAGATCATATGAT 57.844 33.333 18.21 18.21 37.51 2.45
1882 2032 8.950403 ACGTCAAAAATAGCAATCTAGAAAAC 57.050 30.769 0.00 0.00 0.00 2.43
1883 2033 8.564574 ACGTCAAAAATAGCAATCTAGAAAACA 58.435 29.630 0.00 0.00 0.00 2.83
1938 2088 2.350388 CGTCGCTTAATGCAACCAAACT 60.350 45.455 0.00 0.00 43.06 2.66
1941 2091 5.399013 GTCGCTTAATGCAACCAAACTAAT 58.601 37.500 0.00 0.00 43.06 1.73
1952 2102 2.873472 ACCAAACTAATGTTCGTCGCAA 59.127 40.909 0.00 0.00 34.96 4.85
2027 2179 4.471904 AACATCGACATTGAAGGCTAGA 57.528 40.909 0.00 0.00 0.00 2.43
2065 2218 4.920640 TTCTACGGATTTGTGCCAAAAA 57.079 36.364 4.76 0.00 0.00 1.94
2119 2273 1.338769 ACACTAGTCGTCCAATTGGCC 60.339 52.381 20.33 7.67 34.44 5.36
2169 2323 1.613317 CCGCTGGACAGGGTGATGTA 61.613 60.000 14.16 0.00 39.45 2.29
2246 2400 8.753497 AAATGTAAAAGAGGATAAGGTCATCC 57.247 34.615 0.00 0.00 44.27 3.51
2287 2441 4.162509 AGAAAAGGAAGAGGATAAGGTCGG 59.837 45.833 0.00 0.00 0.00 4.79
2288 2442 3.399952 AAGGAAGAGGATAAGGTCGGA 57.600 47.619 0.00 0.00 0.00 4.55
2302 2456 1.861575 GGTCGGATCGCTCAAAATCTC 59.138 52.381 0.00 0.00 0.00 2.75
2421 2575 2.280186 GCATACCCGCTTCCTCCG 60.280 66.667 0.00 0.00 0.00 4.63
2485 2639 3.062466 CGTCCGAGCTGGTGGAGA 61.062 66.667 0.00 0.00 39.52 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.373116 TCGCTCGCAACTCACCCC 62.373 66.667 0.00 0.00 0.00 4.95
18 19 2.811317 CTCGCTCGCAACTCACCC 60.811 66.667 0.00 0.00 0.00 4.61
19 20 3.482783 GCTCGCTCGCAACTCACC 61.483 66.667 0.00 0.00 0.00 4.02
20 21 3.832171 CGCTCGCTCGCAACTCAC 61.832 66.667 0.00 0.00 0.00 3.51
43 44 2.652893 CTTATTTGCTGCGCCCGCTC 62.653 60.000 17.83 6.41 42.51 5.03
44 45 2.749839 TTATTTGCTGCGCCCGCT 60.750 55.556 17.83 2.93 42.51 5.52
45 46 2.278142 CTTATTTGCTGCGCCCGC 60.278 61.111 4.18 8.60 42.35 6.13
46 47 2.278142 GCTTATTTGCTGCGCCCG 60.278 61.111 4.18 0.00 0.00 6.13
47 48 2.278142 CGCTTATTTGCTGCGCCC 60.278 61.111 4.18 0.00 43.08 6.13
51 52 2.951227 GCGCCGCTTATTTGCTGC 60.951 61.111 0.00 0.00 39.28 5.25
52 53 2.648724 CGCGCCGCTTATTTGCTG 60.649 61.111 7.78 0.00 0.00 4.41
53 54 3.124921 ACGCGCCGCTTATTTGCT 61.125 55.556 5.73 0.00 0.00 3.91
54 55 2.646799 ATCACGCGCCGCTTATTTGC 62.647 55.000 5.73 0.00 0.00 3.68
55 56 0.925267 CATCACGCGCCGCTTATTTG 60.925 55.000 5.73 0.00 0.00 2.32
56 57 1.351707 CATCACGCGCCGCTTATTT 59.648 52.632 5.73 0.00 0.00 1.40
57 58 2.534019 CCATCACGCGCCGCTTATT 61.534 57.895 5.73 0.00 0.00 1.40
58 59 2.967076 CCATCACGCGCCGCTTAT 60.967 61.111 5.73 0.00 0.00 1.73
59 60 4.136511 TCCATCACGCGCCGCTTA 62.137 61.111 5.73 0.00 0.00 3.09
63 64 3.083600 GAAACTCCATCACGCGCCG 62.084 63.158 5.73 0.00 0.00 6.46
64 65 2.785258 GAAACTCCATCACGCGCC 59.215 61.111 5.73 0.00 0.00 6.53
65 66 2.395690 CGAAACTCCATCACGCGC 59.604 61.111 5.73 0.00 0.00 6.86
66 67 3.081133 CCGAAACTCCATCACGCG 58.919 61.111 3.53 3.53 0.00 6.01
67 68 2.750888 GGCCGAAACTCCATCACGC 61.751 63.158 0.00 0.00 0.00 5.34
68 69 2.106683 GGGCCGAAACTCCATCACG 61.107 63.158 0.00 0.00 0.00 4.35
69 70 2.106683 CGGGCCGAAACTCCATCAC 61.107 63.158 24.41 0.00 0.00 3.06
70 71 2.267642 CGGGCCGAAACTCCATCA 59.732 61.111 24.41 0.00 0.00 3.07
71 72 3.202706 GCGGGCCGAAACTCCATC 61.203 66.667 33.44 4.02 0.00 3.51
84 85 3.774959 ATCTAGTTCAGCGCGCGGG 62.775 63.158 33.06 23.76 0.00 6.13
85 86 1.421410 AAATCTAGTTCAGCGCGCGG 61.421 55.000 33.06 26.50 0.00 6.46
86 87 0.314578 CAAATCTAGTTCAGCGCGCG 60.315 55.000 28.44 28.44 0.00 6.86
87 88 0.587489 GCAAATCTAGTTCAGCGCGC 60.587 55.000 26.66 26.66 0.00 6.86
88 89 0.026803 GGCAAATCTAGTTCAGCGCG 59.973 55.000 0.00 0.00 0.00 6.86
89 90 0.026803 CGGCAAATCTAGTTCAGCGC 59.973 55.000 0.00 0.00 0.00 5.92
90 91 0.026803 GCGGCAAATCTAGTTCAGCG 59.973 55.000 0.00 0.00 0.00 5.18
91 92 0.026803 CGCGGCAAATCTAGTTCAGC 59.973 55.000 0.00 0.00 0.00 4.26
92 93 0.026803 GCGCGGCAAATCTAGTTCAG 59.973 55.000 8.83 0.00 0.00 3.02
93 94 1.692148 CGCGCGGCAAATCTAGTTCA 61.692 55.000 24.84 0.00 0.00 3.18
94 95 1.012234 CGCGCGGCAAATCTAGTTC 60.012 57.895 24.84 0.00 0.00 3.01
95 96 3.089784 CGCGCGGCAAATCTAGTT 58.910 55.556 24.84 0.00 0.00 2.24
96 97 3.564027 GCGCGCGGCAAATCTAGT 61.564 61.111 33.06 0.00 42.87 2.57
97 98 4.633596 CGCGCGCGGCAAATCTAG 62.634 66.667 43.28 13.53 43.84 2.43
127 128 2.507854 TATAGTGGCTCCAGCGGGC 61.508 63.158 0.00 0.00 43.26 6.13
128 129 1.367840 GTATAGTGGCTCCAGCGGG 59.632 63.158 0.00 0.00 43.26 6.13
129 130 1.367840 GGTATAGTGGCTCCAGCGG 59.632 63.158 0.00 0.00 43.26 5.52
130 131 1.007271 CGGTATAGTGGCTCCAGCG 60.007 63.158 0.00 0.00 43.26 5.18
131 132 1.367840 CCGGTATAGTGGCTCCAGC 59.632 63.158 0.00 0.00 41.14 4.85
132 133 1.120530 AACCGGTATAGTGGCTCCAG 58.879 55.000 8.00 0.00 0.00 3.86
133 134 0.828022 CAACCGGTATAGTGGCTCCA 59.172 55.000 8.00 0.00 0.00 3.86
134 135 0.532196 GCAACCGGTATAGTGGCTCC 60.532 60.000 8.00 0.00 31.05 4.70
135 136 0.874607 CGCAACCGGTATAGTGGCTC 60.875 60.000 8.00 0.00 31.58 4.70
136 137 1.143183 CGCAACCGGTATAGTGGCT 59.857 57.895 8.00 0.00 31.58 4.75
137 138 2.531376 GCGCAACCGGTATAGTGGC 61.531 63.158 8.00 4.61 34.32 5.01
138 139 2.235016 CGCGCAACCGGTATAGTGG 61.235 63.158 8.00 0.00 34.32 4.00
139 140 2.867091 GCGCGCAACCGGTATAGTG 61.867 63.158 29.10 9.97 34.32 2.74
140 141 2.584143 GCGCGCAACCGGTATAGT 60.584 61.111 29.10 0.00 34.32 2.12
141 142 3.688330 CGCGCGCAACCGGTATAG 61.688 66.667 32.61 6.38 34.32 1.31
155 156 1.841663 ATAGCCCATTTTAGCGCGCG 61.842 55.000 28.44 28.44 0.00 6.86
156 157 0.310854 AATAGCCCATTTTAGCGCGC 59.689 50.000 26.66 26.66 0.00 6.86
157 158 2.774439 AAATAGCCCATTTTAGCGCG 57.226 45.000 0.00 0.00 32.74 6.86
158 159 2.539688 GCAAAATAGCCCATTTTAGCGC 59.460 45.455 0.00 0.00 43.51 5.92
159 160 2.788786 CGCAAAATAGCCCATTTTAGCG 59.211 45.455 21.57 21.57 43.51 4.26
160 161 3.123050 CCGCAAAATAGCCCATTTTAGC 58.877 45.455 6.36 10.33 43.51 3.09
161 162 3.123050 GCCGCAAAATAGCCCATTTTAG 58.877 45.455 6.36 4.82 43.51 1.85
162 163 2.480416 CGCCGCAAAATAGCCCATTTTA 60.480 45.455 6.36 0.00 43.51 1.52
163 164 1.738700 CGCCGCAAAATAGCCCATTTT 60.739 47.619 1.71 1.71 45.72 1.82
164 165 0.179113 CGCCGCAAAATAGCCCATTT 60.179 50.000 0.00 0.00 38.54 2.32
165 166 1.319614 ACGCCGCAAAATAGCCCATT 61.320 50.000 0.00 0.00 0.00 3.16
166 167 1.752694 ACGCCGCAAAATAGCCCAT 60.753 52.632 0.00 0.00 0.00 4.00
167 168 2.360600 ACGCCGCAAAATAGCCCA 60.361 55.556 0.00 0.00 0.00 5.36
168 169 2.102161 CACGCCGCAAAATAGCCC 59.898 61.111 0.00 0.00 0.00 5.19
169 170 2.102161 CCACGCCGCAAAATAGCC 59.898 61.111 0.00 0.00 0.00 3.93
170 171 2.579518 GCCACGCCGCAAAATAGC 60.580 61.111 0.00 0.00 0.00 2.97
171 172 2.277247 CGCCACGCCGCAAAATAG 60.277 61.111 0.00 0.00 0.00 1.73
182 183 2.769617 CGTCAAACTAGCGCCACG 59.230 61.111 2.29 0.00 0.00 4.94
183 184 2.474712 GCGTCAAACTAGCGCCAC 59.525 61.111 2.29 0.00 44.67 5.01
188 189 1.566018 AACAGCCGCGTCAAACTAGC 61.566 55.000 4.92 0.00 0.00 3.42
189 190 0.163788 CAACAGCCGCGTCAAACTAG 59.836 55.000 4.92 0.00 0.00 2.57
190 191 0.249531 TCAACAGCCGCGTCAAACTA 60.250 50.000 4.92 0.00 0.00 2.24
191 192 1.092921 TTCAACAGCCGCGTCAAACT 61.093 50.000 4.92 0.00 0.00 2.66
192 193 0.657368 CTTCAACAGCCGCGTCAAAC 60.657 55.000 4.92 0.00 0.00 2.93
193 194 0.812014 TCTTCAACAGCCGCGTCAAA 60.812 50.000 4.92 0.00 0.00 2.69
194 195 0.602638 ATCTTCAACAGCCGCGTCAA 60.603 50.000 4.92 0.00 0.00 3.18
195 196 1.005037 ATCTTCAACAGCCGCGTCA 60.005 52.632 4.92 0.00 0.00 4.35
196 197 1.291877 ACATCTTCAACAGCCGCGTC 61.292 55.000 4.92 0.00 0.00 5.19
197 198 0.884704 AACATCTTCAACAGCCGCGT 60.885 50.000 4.92 0.00 0.00 6.01
198 199 0.238289 AAACATCTTCAACAGCCGCG 59.762 50.000 0.00 0.00 0.00 6.46
199 200 2.422276 AAAACATCTTCAACAGCCGC 57.578 45.000 0.00 0.00 0.00 6.53
200 201 5.519722 ACTTTAAAACATCTTCAACAGCCG 58.480 37.500 0.00 0.00 0.00 5.52
201 202 8.082242 ACATACTTTAAAACATCTTCAACAGCC 58.918 33.333 0.00 0.00 0.00 4.85
202 203 9.118236 GACATACTTTAAAACATCTTCAACAGC 57.882 33.333 0.00 0.00 0.00 4.40
224 225 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
225 226 8.323567 TGGACTACATACGGATGTATATAGACA 58.676 37.037 20.64 12.12 45.42 3.41
226 227 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
230 231 9.121658 CACTATGGACTACATACGGATGTATAT 57.878 37.037 20.64 12.15 45.42 0.86
231 232 7.555195 CCACTATGGACTACATACGGATGTATA 59.445 40.741 20.64 10.04 42.60 1.47
232 233 6.377429 CCACTATGGACTACATACGGATGTAT 59.623 42.308 20.64 9.39 42.60 2.29
233 234 5.708697 CCACTATGGACTACATACGGATGTA 59.291 44.000 19.32 19.32 41.62 2.29
234 235 4.523173 CCACTATGGACTACATACGGATGT 59.477 45.833 19.12 19.12 44.08 3.06
235 236 4.765339 TCCACTATGGACTACATACGGATG 59.235 45.833 5.94 5.94 42.67 3.51
236 237 4.994282 TCCACTATGGACTACATACGGAT 58.006 43.478 0.00 0.00 42.67 4.18
237 238 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
248 249 7.979786 AGTCTTTTAGAGATTCCACTATGGA 57.020 36.000 0.00 0.00 46.61 3.41
249 250 8.043710 ACAAGTCTTTTAGAGATTCCACTATGG 58.956 37.037 0.00 0.00 36.28 2.74
261 262 9.382244 CGTTCCAAAAATACAAGTCTTTTAGAG 57.618 33.333 0.00 0.00 0.00 2.43
262 263 8.347035 CCGTTCCAAAAATACAAGTCTTTTAGA 58.653 33.333 0.00 0.00 0.00 2.10
263 264 8.347035 TCCGTTCCAAAAATACAAGTCTTTTAG 58.653 33.333 0.00 0.00 0.00 1.85
264 265 8.223177 TCCGTTCCAAAAATACAAGTCTTTTA 57.777 30.769 0.00 0.00 0.00 1.52
265 266 7.102847 TCCGTTCCAAAAATACAAGTCTTTT 57.897 32.000 0.00 0.00 0.00 2.27
266 267 6.238925 CCTCCGTTCCAAAAATACAAGTCTTT 60.239 38.462 0.00 0.00 0.00 2.52
267 268 5.240844 CCTCCGTTCCAAAAATACAAGTCTT 59.759 40.000 0.00 0.00 0.00 3.01
268 269 4.760204 CCTCCGTTCCAAAAATACAAGTCT 59.240 41.667 0.00 0.00 0.00 3.24
269 270 4.082949 CCCTCCGTTCCAAAAATACAAGTC 60.083 45.833 0.00 0.00 0.00 3.01
270 271 3.824443 CCCTCCGTTCCAAAAATACAAGT 59.176 43.478 0.00 0.00 0.00 3.16
271 272 4.076394 TCCCTCCGTTCCAAAAATACAAG 58.924 43.478 0.00 0.00 0.00 3.16
272 273 4.101645 TCCCTCCGTTCCAAAAATACAA 57.898 40.909 0.00 0.00 0.00 2.41
273 274 3.791953 TCCCTCCGTTCCAAAAATACA 57.208 42.857 0.00 0.00 0.00 2.29
274 275 5.648960 TGTATTCCCTCCGTTCCAAAAATAC 59.351 40.000 0.00 0.00 0.00 1.89
275 276 5.817784 TGTATTCCCTCCGTTCCAAAAATA 58.182 37.500 0.00 0.00 0.00 1.40
276 277 4.668636 TGTATTCCCTCCGTTCCAAAAAT 58.331 39.130 0.00 0.00 0.00 1.82
277 278 4.101645 TGTATTCCCTCCGTTCCAAAAA 57.898 40.909 0.00 0.00 0.00 1.94
278 279 3.791953 TGTATTCCCTCCGTTCCAAAA 57.208 42.857 0.00 0.00 0.00 2.44
279 280 3.414269 GTTGTATTCCCTCCGTTCCAAA 58.586 45.455 0.00 0.00 0.00 3.28
280 281 2.290450 GGTTGTATTCCCTCCGTTCCAA 60.290 50.000 0.00 0.00 0.00 3.53
281 282 1.279846 GGTTGTATTCCCTCCGTTCCA 59.720 52.381 0.00 0.00 0.00 3.53
282 283 1.407851 GGGTTGTATTCCCTCCGTTCC 60.408 57.143 0.00 0.00 41.58 3.62
283 284 1.279846 TGGGTTGTATTCCCTCCGTTC 59.720 52.381 2.65 0.00 44.84 3.95
284 285 1.364269 TGGGTTGTATTCCCTCCGTT 58.636 50.000 2.65 0.00 44.84 4.44
285 286 1.280998 CTTGGGTTGTATTCCCTCCGT 59.719 52.381 2.65 0.00 44.84 4.69
286 287 1.557832 TCTTGGGTTGTATTCCCTCCG 59.442 52.381 2.65 0.00 44.84 4.63
287 288 2.576648 ACTCTTGGGTTGTATTCCCTCC 59.423 50.000 2.65 0.00 44.84 4.30
288 289 4.302559 AACTCTTGGGTTGTATTCCCTC 57.697 45.455 2.65 0.00 44.84 4.30
289 290 4.407365 CAAACTCTTGGGTTGTATTCCCT 58.593 43.478 2.65 0.00 44.84 4.20
290 291 4.783764 CAAACTCTTGGGTTGTATTCCC 57.216 45.455 0.00 0.00 44.81 3.97
303 304 1.377333 GCCGCCTAGCCAAACTCTT 60.377 57.895 0.00 0.00 0.00 2.85
349 350 2.009051 GTGTCATCGTCCATGATGCAA 58.991 47.619 0.00 0.00 43.72 4.08
361 362 2.949451 ACTAGCTTGAGGTGTCATCG 57.051 50.000 1.04 0.00 30.85 3.84
380 381 6.154192 TCTCTACTTCTCTCTTGTACGGAGTA 59.846 42.308 13.08 1.28 45.11 2.59
382 383 5.421277 TCTCTACTTCTCTCTTGTACGGAG 58.579 45.833 8.75 8.75 0.00 4.63
383 384 5.417754 TCTCTACTTCTCTCTTGTACGGA 57.582 43.478 0.00 0.00 0.00 4.69
384 385 5.644636 AGTTCTCTACTTCTCTCTTGTACGG 59.355 44.000 0.00 0.00 31.29 4.02
385 386 6.402766 CCAGTTCTCTACTTCTCTCTTGTACG 60.403 46.154 0.00 0.00 33.85 3.67
386 387 6.655848 TCCAGTTCTCTACTTCTCTCTTGTAC 59.344 42.308 0.00 0.00 33.85 2.90
387 388 6.655848 GTCCAGTTCTCTACTTCTCTCTTGTA 59.344 42.308 0.00 0.00 33.85 2.41
388 389 5.475564 GTCCAGTTCTCTACTTCTCTCTTGT 59.524 44.000 0.00 0.00 33.85 3.16
389 390 5.475220 TGTCCAGTTCTCTACTTCTCTCTTG 59.525 44.000 0.00 0.00 33.85 3.02
390 391 5.636123 TGTCCAGTTCTCTACTTCTCTCTT 58.364 41.667 0.00 0.00 33.85 2.85
391 392 5.249780 TGTCCAGTTCTCTACTTCTCTCT 57.750 43.478 0.00 0.00 33.85 3.10
392 393 6.238266 CGTATGTCCAGTTCTCTACTTCTCTC 60.238 46.154 0.00 0.00 33.85 3.20
393 394 5.587043 CGTATGTCCAGTTCTCTACTTCTCT 59.413 44.000 0.00 0.00 33.85 3.10
394 395 5.731126 GCGTATGTCCAGTTCTCTACTTCTC 60.731 48.000 0.00 0.00 33.85 2.87
395 396 4.096682 GCGTATGTCCAGTTCTCTACTTCT 59.903 45.833 0.00 0.00 33.85 2.85
396 397 4.096682 AGCGTATGTCCAGTTCTCTACTTC 59.903 45.833 0.00 0.00 33.85 3.01
397 398 4.017808 AGCGTATGTCCAGTTCTCTACTT 58.982 43.478 0.00 0.00 33.85 2.24
398 399 3.378742 CAGCGTATGTCCAGTTCTCTACT 59.621 47.826 0.00 0.00 37.68 2.57
399 400 3.128938 ACAGCGTATGTCCAGTTCTCTAC 59.871 47.826 0.00 0.00 37.75 2.59
400 401 3.353557 ACAGCGTATGTCCAGTTCTCTA 58.646 45.455 0.00 0.00 37.75 2.43
420 421 4.760047 ATGTGCGCCGTGGAGGAC 62.760 66.667 4.18 7.32 45.00 3.85
492 527 3.277211 TTCAACGTCCCTCTCCGCG 62.277 63.158 0.00 0.00 0.00 6.46
508 543 7.544622 GGTGGAGATTTAGGTAAATTTGGTTC 58.455 38.462 0.00 0.00 36.13 3.62
607 642 2.104170 AGCTGTCTAGTGCCTAGTTCC 58.896 52.381 8.51 1.58 35.72 3.62
643 678 2.263741 GGGTGGCTCAGCAGTTGTG 61.264 63.158 0.00 0.00 33.07 3.33
666 701 5.618056 TCAGATGCATCTTGTCAAAAGAC 57.382 39.130 26.70 0.00 34.22 3.01
694 729 7.173907 CACAACCTATCAAGTCTGATTTCTGTT 59.826 37.037 0.00 0.00 39.36 3.16
788 823 6.393990 ACAGAGTGATCAGCTAACAAAGTAG 58.606 40.000 0.00 0.00 0.00 2.57
824 859 1.609501 CCCCTTCTCTGGACCGTGA 60.610 63.158 0.00 0.00 0.00 4.35
827 862 2.592993 TTGCCCCTTCTCTGGACCG 61.593 63.158 0.00 0.00 0.00 4.79
837 897 2.452600 TTGTTCTTCTGTTGCCCCTT 57.547 45.000 0.00 0.00 0.00 3.95
839 899 3.132111 TCTTTTTGTTCTTCTGTTGCCCC 59.868 43.478 0.00 0.00 0.00 5.80
840 900 4.385358 TCTTTTTGTTCTTCTGTTGCCC 57.615 40.909 0.00 0.00 0.00 5.36
842 902 7.581011 TTTCTTCTTTTTGTTCTTCTGTTGC 57.419 32.000 0.00 0.00 0.00 4.17
843 903 7.201470 GGCTTTCTTCTTTTTGTTCTTCTGTTG 60.201 37.037 0.00 0.00 0.00 3.33
844 904 6.813649 GGCTTTCTTCTTTTTGTTCTTCTGTT 59.186 34.615 0.00 0.00 0.00 3.16
845 905 6.333416 GGCTTTCTTCTTTTTGTTCTTCTGT 58.667 36.000 0.00 0.00 0.00 3.41
846 906 5.750547 GGGCTTTCTTCTTTTTGTTCTTCTG 59.249 40.000 0.00 0.00 0.00 3.02
941 1011 1.153958 GGAATGCTGCTTGCGGTTC 60.154 57.895 0.00 0.53 46.63 3.62
1018 1091 1.135972 CACGCAAGAAATTCACCGGAG 60.136 52.381 9.46 0.00 43.62 4.63
1022 1099 1.266718 TCAGCACGCAAGAAATTCACC 59.733 47.619 0.00 0.00 43.62 4.02
1053 1130 0.103208 AAGAGATCGTCCATGGCGAC 59.897 55.000 26.26 20.37 41.33 5.19
1074 1151 5.866633 CCCATCAATTATTAGAGAGAGCGTC 59.133 44.000 0.00 0.00 0.00 5.19
1077 1154 7.449247 AGAACCCATCAATTATTAGAGAGAGC 58.551 38.462 0.00 0.00 0.00 4.09
1179 1256 3.266510 TCACCATAGATGTCTGCAACC 57.733 47.619 0.00 0.00 0.00 3.77
1204 1281 4.035017 CACCAACGCAAAGTTCAAGTTAG 58.965 43.478 0.00 0.00 42.02 2.34
1205 1282 3.440872 ACACCAACGCAAAGTTCAAGTTA 59.559 39.130 0.00 0.00 42.02 2.24
1206 1283 2.230266 ACACCAACGCAAAGTTCAAGTT 59.770 40.909 0.00 0.00 42.02 2.66
1212 1289 1.470051 AGGAACACCAACGCAAAGTT 58.530 45.000 0.00 0.00 45.45 2.66
1220 1297 5.063438 GCTGAAAAGAAAAAGGAACACCAAC 59.937 40.000 0.00 0.00 0.00 3.77
1248 1325 4.150627 CGAGAAGCGAAACAGATGAAGAAA 59.849 41.667 0.00 0.00 44.57 2.52
1265 1342 1.137872 ACCAGGATAGCAAGCGAGAAG 59.862 52.381 0.00 0.00 0.00 2.85
1344 1421 1.354337 CCGCGGCTATGGAATCGATG 61.354 60.000 14.67 0.00 0.00 3.84
1353 1430 2.125310 TTGTGGTCCGCGGCTATG 60.125 61.111 23.51 0.00 0.00 2.23
1419 1496 1.068954 CCAAACTTCCGCAGCTTCTTC 60.069 52.381 0.00 0.00 0.00 2.87
1524 1601 4.099633 TGGGAGAGAACATGAACAGAGAT 58.900 43.478 0.00 0.00 0.00 2.75
1526 1603 3.969287 TGGGAGAGAACATGAACAGAG 57.031 47.619 0.00 0.00 0.00 3.35
1541 1619 6.678568 ACTAACAAGAGATATCCATGGGAG 57.321 41.667 13.02 1.59 34.05 4.30
1546 1624 8.814038 AGCAAAAACTAACAAGAGATATCCAT 57.186 30.769 0.00 0.00 0.00 3.41
1548 1626 8.394121 CAGAGCAAAAACTAACAAGAGATATCC 58.606 37.037 0.00 0.00 0.00 2.59
1582 1696 7.684317 TCCTGAATACCCATATAACTGAACA 57.316 36.000 0.00 0.00 0.00 3.18
1593 1707 7.074237 ACCTCTGATTAAATCCTGAATACCCAT 59.926 37.037 0.00 0.00 0.00 4.00
1599 1713 8.910944 CATTTCACCTCTGATTAAATCCTGAAT 58.089 33.333 0.00 0.00 0.00 2.57
1600 1714 7.890127 ACATTTCACCTCTGATTAAATCCTGAA 59.110 33.333 0.00 0.00 0.00 3.02
1601 1715 7.405292 ACATTTCACCTCTGATTAAATCCTGA 58.595 34.615 0.00 0.00 0.00 3.86
1603 1717 9.178758 GTAACATTTCACCTCTGATTAAATCCT 57.821 33.333 0.00 0.00 0.00 3.24
1605 1719 9.178758 AGGTAACATTTCACCTCTGATTAAATC 57.821 33.333 0.00 0.00 41.44 2.17
1612 1758 3.072330 TGCAGGTAACATTTCACCTCTGA 59.928 43.478 0.00 0.00 43.45 3.27
1635 1781 4.534500 TCATAGGGAAAAGGTGAGCAGTTA 59.466 41.667 0.00 0.00 0.00 2.24
1638 1784 3.054802 AGTCATAGGGAAAAGGTGAGCAG 60.055 47.826 0.00 0.00 0.00 4.24
1641 1787 5.450688 CGAGTAGTCATAGGGAAAAGGTGAG 60.451 48.000 0.00 0.00 0.00 3.51
1647 1793 4.382685 CCAAGCGAGTAGTCATAGGGAAAA 60.383 45.833 0.00 0.00 0.00 2.29
1648 1794 3.132289 CCAAGCGAGTAGTCATAGGGAAA 59.868 47.826 0.00 0.00 0.00 3.13
1649 1795 2.693591 CCAAGCGAGTAGTCATAGGGAA 59.306 50.000 0.00 0.00 0.00 3.97
1650 1796 2.307768 CCAAGCGAGTAGTCATAGGGA 58.692 52.381 0.00 0.00 0.00 4.20
1651 1797 1.269831 GCCAAGCGAGTAGTCATAGGG 60.270 57.143 0.00 0.00 0.00 3.53
1652 1798 1.409064 TGCCAAGCGAGTAGTCATAGG 59.591 52.381 0.00 0.00 0.00 2.57
1653 1799 2.871182 TGCCAAGCGAGTAGTCATAG 57.129 50.000 0.00 0.00 0.00 2.23
1655 1801 1.550524 TCTTGCCAAGCGAGTAGTCAT 59.449 47.619 0.00 0.00 40.65 3.06
1656 1802 0.966179 TCTTGCCAAGCGAGTAGTCA 59.034 50.000 0.00 0.00 40.65 3.41
1657 1803 1.351153 GTCTTGCCAAGCGAGTAGTC 58.649 55.000 0.00 0.00 40.65 2.59
1659 1805 0.388649 ACGTCTTGCCAAGCGAGTAG 60.389 55.000 21.91 9.38 40.65 2.57
1660 1806 0.032952 AACGTCTTGCCAAGCGAGTA 59.967 50.000 21.91 0.00 40.65 2.59
1661 1807 1.222115 GAACGTCTTGCCAAGCGAGT 61.222 55.000 21.91 12.39 40.65 4.18
1663 1809 0.812014 TTGAACGTCTTGCCAAGCGA 60.812 50.000 21.91 3.61 34.02 4.93
1664 1810 0.028770 TTTGAACGTCTTGCCAAGCG 59.971 50.000 16.10 16.10 35.30 4.68
1666 1812 2.554032 AGGATTTGAACGTCTTGCCAAG 59.446 45.455 0.00 0.00 0.00 3.61
1668 1814 2.270352 AGGATTTGAACGTCTTGCCA 57.730 45.000 0.00 0.00 0.00 4.92
1669 1815 3.751698 AGTAAGGATTTGAACGTCTTGCC 59.248 43.478 0.00 0.00 0.00 4.52
1671 1817 7.464710 GCTGATAGTAAGGATTTGAACGTCTTG 60.465 40.741 0.00 0.00 0.00 3.02
1672 1818 6.535508 GCTGATAGTAAGGATTTGAACGTCTT 59.464 38.462 0.00 0.00 0.00 3.01
1673 1819 6.043411 GCTGATAGTAAGGATTTGAACGTCT 58.957 40.000 0.00 0.00 0.00 4.18
1674 1820 5.051641 CGCTGATAGTAAGGATTTGAACGTC 60.052 44.000 0.00 0.00 0.00 4.34
1675 1821 4.804139 CGCTGATAGTAAGGATTTGAACGT 59.196 41.667 0.00 0.00 0.00 3.99
1676 1822 4.804139 ACGCTGATAGTAAGGATTTGAACG 59.196 41.667 0.00 0.00 0.00 3.95
1678 1824 5.972935 TCACGCTGATAGTAAGGATTTGAA 58.027 37.500 0.00 0.00 0.00 2.69
1679 1825 5.592104 TCACGCTGATAGTAAGGATTTGA 57.408 39.130 0.00 0.00 0.00 2.69
1680 1826 5.580691 TGTTCACGCTGATAGTAAGGATTTG 59.419 40.000 0.00 0.00 0.00 2.32
1681 1827 5.730550 TGTTCACGCTGATAGTAAGGATTT 58.269 37.500 0.00 0.00 0.00 2.17
1682 1828 5.339008 TGTTCACGCTGATAGTAAGGATT 57.661 39.130 0.00 0.00 0.00 3.01
1684 1830 4.794278 TTGTTCACGCTGATAGTAAGGA 57.206 40.909 0.00 0.00 0.00 3.36
1685 1831 7.567571 CATAATTGTTCACGCTGATAGTAAGG 58.432 38.462 0.00 0.00 0.00 2.69
1686 1832 7.065894 GCATAATTGTTCACGCTGATAGTAAG 58.934 38.462 0.00 0.00 0.00 2.34
1688 1834 6.045955 TGCATAATTGTTCACGCTGATAGTA 58.954 36.000 0.00 0.00 0.00 1.82
1689 1835 4.875536 TGCATAATTGTTCACGCTGATAGT 59.124 37.500 0.00 0.00 0.00 2.12
1690 1836 5.408204 TGCATAATTGTTCACGCTGATAG 57.592 39.130 0.00 0.00 0.00 2.08
1691 1837 4.273235 CCTGCATAATTGTTCACGCTGATA 59.727 41.667 0.00 0.00 0.00 2.15
1692 1838 3.065786 CCTGCATAATTGTTCACGCTGAT 59.934 43.478 0.00 0.00 0.00 2.90
1693 1839 2.419673 CCTGCATAATTGTTCACGCTGA 59.580 45.455 0.00 0.00 0.00 4.26
1694 1840 2.478370 CCCTGCATAATTGTTCACGCTG 60.478 50.000 0.00 0.00 0.00 5.18
1695 1841 1.745087 CCCTGCATAATTGTTCACGCT 59.255 47.619 0.00 0.00 0.00 5.07
1696 1842 1.472480 ACCCTGCATAATTGTTCACGC 59.528 47.619 0.00 0.00 0.00 5.34
1697 1843 3.848272 AACCCTGCATAATTGTTCACG 57.152 42.857 0.00 0.00 0.00 4.35
1698 1844 4.021544 TGGAAACCCTGCATAATTGTTCAC 60.022 41.667 0.00 0.00 0.00 3.18
1699 1845 4.155709 TGGAAACCCTGCATAATTGTTCA 58.844 39.130 0.00 0.00 0.00 3.18
1700 1846 4.799564 TGGAAACCCTGCATAATTGTTC 57.200 40.909 0.00 0.00 0.00 3.18
1701 1847 4.893608 GTTGGAAACCCTGCATAATTGTT 58.106 39.130 0.00 0.00 42.21 2.83
1702 1848 4.535526 GTTGGAAACCCTGCATAATTGT 57.464 40.909 0.00 0.00 42.21 2.71
1726 1872 6.609616 AGAAACTGATCCAAAAACCCTTAACA 59.390 34.615 0.00 0.00 0.00 2.41
1729 1875 6.610830 AGAGAAACTGATCCAAAAACCCTTA 58.389 36.000 0.00 0.00 0.00 2.69
1730 1876 5.458595 AGAGAAACTGATCCAAAAACCCTT 58.541 37.500 0.00 0.00 0.00 3.95
1733 1879 6.391227 TGAAGAGAAACTGATCCAAAAACC 57.609 37.500 0.00 0.00 0.00 3.27
1742 1889 7.882271 AGCACTTTATCTTGAAGAGAAACTGAT 59.118 33.333 19.14 13.34 38.06 2.90
1762 1909 0.258774 ACACACCTTTGGGAGCACTT 59.741 50.000 0.00 0.00 36.25 3.16
1763 1910 1.136828 TACACACCTTTGGGAGCACT 58.863 50.000 0.00 0.00 36.25 4.40
1764 1911 1.975660 TTACACACCTTTGGGAGCAC 58.024 50.000 0.00 0.00 36.25 4.40
1765 1912 2.738587 TTTACACACCTTTGGGAGCA 57.261 45.000 0.00 0.00 36.25 4.26
1766 1913 2.352715 GCATTTACACACCTTTGGGAGC 60.353 50.000 0.00 0.00 36.25 4.70
1768 1915 2.890311 CTGCATTTACACACCTTTGGGA 59.110 45.455 0.00 0.00 36.25 4.37
1770 1917 3.820467 TCTCTGCATTTACACACCTTTGG 59.180 43.478 0.00 0.00 0.00 3.28
1771 1918 4.275689 TGTCTCTGCATTTACACACCTTTG 59.724 41.667 0.00 0.00 0.00 2.77
1773 1920 4.085357 TGTCTCTGCATTTACACACCTT 57.915 40.909 0.00 0.00 0.00 3.50
1774 1921 3.769739 TGTCTCTGCATTTACACACCT 57.230 42.857 0.00 0.00 0.00 4.00
1776 1923 5.869344 TGTCTATGTCTCTGCATTTACACAC 59.131 40.000 0.00 0.00 0.00 3.82
1777 1924 5.869344 GTGTCTATGTCTCTGCATTTACACA 59.131 40.000 13.63 0.00 39.88 3.72
1778 1925 5.869344 TGTGTCTATGTCTCTGCATTTACAC 59.131 40.000 12.51 12.51 40.17 2.90
1779 1926 6.036577 TGTGTCTATGTCTCTGCATTTACA 57.963 37.500 0.00 0.00 0.00 2.41
1780 1927 6.333416 TCTGTGTCTATGTCTCTGCATTTAC 58.667 40.000 0.00 0.00 0.00 2.01
1781 1928 6.530019 TCTGTGTCTATGTCTCTGCATTTA 57.470 37.500 0.00 0.00 0.00 1.40
1795 1942 4.251543 TCTGTTCGCAAATCTGTGTCTA 57.748 40.909 0.00 0.00 34.50 2.59
1801 1948 4.840401 TCGTATTCTGTTCGCAAATCTG 57.160 40.909 0.00 0.00 0.00 2.90
1808 1955 3.541516 CGGTCATTTCGTATTCTGTTCGC 60.542 47.826 0.00 0.00 0.00 4.70
1809 1956 3.541516 GCGGTCATTTCGTATTCTGTTCG 60.542 47.826 0.00 0.00 0.00 3.95
1817 1964 2.234300 ATTCGGCGGTCATTTCGTAT 57.766 45.000 7.21 0.00 0.00 3.06
1820 1967 1.661617 TGTAATTCGGCGGTCATTTCG 59.338 47.619 7.21 0.00 0.00 3.46
1826 1973 3.514645 TCTAGTTTGTAATTCGGCGGTC 58.485 45.455 7.21 0.00 0.00 4.79
1830 1977 8.534333 TCATATGATCTAGTTTGTAATTCGGC 57.466 34.615 0.00 0.00 0.00 5.54
1857 2004 8.564574 TGTTTTCTAGATTGCTATTTTTGACGT 58.435 29.630 0.00 0.00 0.00 4.34
1920 2070 5.633182 AACATTAGTTTGGTTGCATTAAGCG 59.367 36.000 0.00 0.00 39.93 4.68
1938 2088 4.508492 TCTGTTCTTTTGCGACGAACATTA 59.492 37.500 14.99 7.16 44.00 1.90
1941 2091 2.272678 TCTGTTCTTTTGCGACGAACA 58.727 42.857 14.23 14.23 43.18 3.18
1952 2102 6.484977 GTCTCTGTTTCATTCCTCTGTTCTTT 59.515 38.462 0.00 0.00 0.00 2.52
2027 2179 4.024048 CGTAGAATTGTGGTTTCTGCAACT 60.024 41.667 0.00 0.00 36.10 3.16
2119 2273 7.072177 TCTGTCATAAACGAGCTTAAATTGG 57.928 36.000 0.00 0.00 0.00 3.16
2169 2323 0.441145 GCGAACCGTTATTTCGTGCT 59.559 50.000 6.38 0.00 46.09 4.40
2257 2411 9.083422 CCTTATCCTCTTCCTTTTCTTTTTCTT 57.917 33.333 0.00 0.00 0.00 2.52
2258 2412 8.228206 ACCTTATCCTCTTCCTTTTCTTTTTCT 58.772 33.333 0.00 0.00 0.00 2.52
2259 2413 8.410673 ACCTTATCCTCTTCCTTTTCTTTTTC 57.589 34.615 0.00 0.00 0.00 2.29
2287 2441 3.525537 TCCTGTGAGATTTTGAGCGATC 58.474 45.455 0.00 0.00 0.00 3.69
2288 2442 3.196469 TCTCCTGTGAGATTTTGAGCGAT 59.804 43.478 0.00 0.00 42.73 4.58
2302 2456 1.137872 GGCTCATGGTACTCTCCTGTG 59.862 57.143 0.00 0.00 0.00 3.66
2313 2467 1.107114 CTCTACTCGTGGCTCATGGT 58.893 55.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.