Multiple sequence alignment - TraesCS2D01G364600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G364600 chr2D 100.000 4078 0 0 1 4078 470059367 470055290 0.000000e+00 7531.0
1 TraesCS2D01G364600 chr2D 92.560 1035 52 12 2157 3189 470043384 470042373 0.000000e+00 1461.0
2 TraesCS2D01G364600 chr2D 95.111 859 32 6 3223 4078 54001225 54000374 0.000000e+00 1345.0
3 TraesCS2D01G364600 chr2D 87.808 689 67 11 1472 2158 470044106 470043433 0.000000e+00 791.0
4 TraesCS2D01G364600 chr2D 88.363 507 38 12 408 900 470045048 470044549 1.260000e-164 590.0
5 TraesCS2D01G364600 chr2D 80.032 626 65 40 587 1199 470140399 470139821 3.790000e-110 409.0
6 TraesCS2D01G364600 chr2D 83.913 460 37 17 953 1408 470044551 470044125 4.910000e-109 405.0
7 TraesCS2D01G364600 chr2D 84.551 356 32 9 2377 2715 470138004 470137655 8.450000e-87 331.0
8 TraesCS2D01G364600 chr2D 90.196 204 19 1 2879 3081 470137588 470137385 8.690000e-67 265.0
9 TraesCS2D01G364600 chr2D 92.727 165 9 3 1230 1394 470139818 470139657 6.810000e-58 235.0
10 TraesCS2D01G364600 chr3D 96.812 847 19 4 3233 4078 479937984 479937145 0.000000e+00 1408.0
11 TraesCS2D01G364600 chr3D 94.743 856 28 9 3232 4078 553879053 553878206 0.000000e+00 1315.0
12 TraesCS2D01G364600 chr3D 94.626 856 31 7 3232 4078 443379739 443378890 0.000000e+00 1312.0
13 TraesCS2D01G364600 chr3D 77.876 226 43 5 1564 1785 365990689 365990467 2.560000e-27 134.0
14 TraesCS2D01G364600 chr5D 95.878 849 21 7 3232 4078 14114496 14113660 0.000000e+00 1362.0
15 TraesCS2D01G364600 chr5D 95.053 849 33 5 3232 4078 74136337 74135496 0.000000e+00 1327.0
16 TraesCS2D01G364600 chr1D 94.830 851 33 7 3232 4078 485831639 485832482 0.000000e+00 1317.0
17 TraesCS2D01G364600 chr7D 94.632 857 30 9 3232 4078 626469194 626470044 0.000000e+00 1314.0
18 TraesCS2D01G364600 chr7D 96.049 405 15 1 1 404 12424495 12424091 0.000000e+00 658.0
19 TraesCS2D01G364600 chr6A 94.799 846 35 6 3234 4078 596612783 596611946 0.000000e+00 1310.0
20 TraesCS2D01G364600 chr6A 84.783 92 8 3 1693 1782 404458270 404458183 2.020000e-13 87.9
21 TraesCS2D01G364600 chr2B 88.515 1010 67 20 408 1410 548663661 548662694 0.000000e+00 1177.0
22 TraesCS2D01G364600 chr2B 93.074 592 28 5 2175 2753 548662185 548661594 0.000000e+00 854.0
23 TraesCS2D01G364600 chr2B 94.250 400 16 6 996 1394 548912276 548911883 4.510000e-169 604.0
24 TraesCS2D01G364600 chr2B 91.228 342 19 6 2851 3189 548661593 548661260 4.810000e-124 455.0
25 TraesCS2D01G364600 chr2B 80.877 570 79 14 2157 2715 548911809 548911259 4.870000e-114 422.0
26 TraesCS2D01G364600 chr2B 89.024 164 15 1 1231 1394 571252619 571252779 2.490000e-47 200.0
27 TraesCS2D01G364600 chr2A 88.825 698 58 14 1466 2158 611316883 611316201 0.000000e+00 839.0
28 TraesCS2D01G364600 chr2A 94.159 428 14 4 2337 2753 611316014 611315587 3.440000e-180 641.0
29 TraesCS2D01G364600 chr2A 94.103 407 12 4 996 1394 611746954 611746552 3.490000e-170 608.0
30 TraesCS2D01G364600 chr2A 82.325 628 68 23 1466 2080 612003380 612003977 4.700000e-139 505.0
31 TraesCS2D01G364600 chr2A 84.921 504 39 19 953 1447 611317347 611316872 3.690000e-130 475.0
32 TraesCS2D01G364600 chr2A 90.805 348 23 4 2851 3189 611315586 611315239 1.340000e-124 457.0
33 TraesCS2D01G364600 chr2A 81.754 422 49 16 2319 2715 611746294 611745876 1.090000e-85 327.0
34 TraesCS2D01G364600 chr2A 90.686 204 17 2 2879 3081 611745799 611745597 1.870000e-68 270.0
35 TraesCS2D01G364600 chr2A 95.105 143 3 3 2157 2299 611316152 611316014 5.310000e-54 222.0
36 TraesCS2D01G364600 chr2A 92.241 116 8 1 403 518 611333612 611333498 3.260000e-36 163.0
37 TraesCS2D01G364600 chr2A 83.735 166 21 3 1232 1394 631795707 631795869 7.060000e-33 152.0
38 TraesCS2D01G364600 chr5A 93.827 405 23 1 1 403 311942415 311942819 3.490000e-170 608.0
39 TraesCS2D01G364600 chr3B 79.661 177 32 3 1611 1785 477364444 477364270 1.540000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G364600 chr2D 470055290 470059367 4077 True 7531.000000 7531 100.000000 1 4078 1 chr2D.!!$R2 4077
1 TraesCS2D01G364600 chr2D 54000374 54001225 851 True 1345.000000 1345 95.111000 3223 4078 1 chr2D.!!$R1 855
2 TraesCS2D01G364600 chr2D 470042373 470045048 2675 True 811.750000 1461 88.161000 408 3189 4 chr2D.!!$R3 2781
3 TraesCS2D01G364600 chr2D 470137385 470140399 3014 True 310.000000 409 86.876500 587 3081 4 chr2D.!!$R4 2494
4 TraesCS2D01G364600 chr3D 479937145 479937984 839 True 1408.000000 1408 96.812000 3233 4078 1 chr3D.!!$R3 845
5 TraesCS2D01G364600 chr3D 553878206 553879053 847 True 1315.000000 1315 94.743000 3232 4078 1 chr3D.!!$R4 846
6 TraesCS2D01G364600 chr3D 443378890 443379739 849 True 1312.000000 1312 94.626000 3232 4078 1 chr3D.!!$R2 846
7 TraesCS2D01G364600 chr5D 14113660 14114496 836 True 1362.000000 1362 95.878000 3232 4078 1 chr5D.!!$R1 846
8 TraesCS2D01G364600 chr5D 74135496 74136337 841 True 1327.000000 1327 95.053000 3232 4078 1 chr5D.!!$R2 846
9 TraesCS2D01G364600 chr1D 485831639 485832482 843 False 1317.000000 1317 94.830000 3232 4078 1 chr1D.!!$F1 846
10 TraesCS2D01G364600 chr7D 626469194 626470044 850 False 1314.000000 1314 94.632000 3232 4078 1 chr7D.!!$F1 846
11 TraesCS2D01G364600 chr6A 596611946 596612783 837 True 1310.000000 1310 94.799000 3234 4078 1 chr6A.!!$R2 844
12 TraesCS2D01G364600 chr2B 548661260 548663661 2401 True 828.666667 1177 90.939000 408 3189 3 chr2B.!!$R1 2781
13 TraesCS2D01G364600 chr2B 548911259 548912276 1017 True 513.000000 604 87.563500 996 2715 2 chr2B.!!$R2 1719
14 TraesCS2D01G364600 chr2A 611315239 611317347 2108 True 526.800000 839 90.763000 953 3189 5 chr2A.!!$R2 2236
15 TraesCS2D01G364600 chr2A 612003380 612003977 597 False 505.000000 505 82.325000 1466 2080 1 chr2A.!!$F1 614
16 TraesCS2D01G364600 chr2A 611745597 611746954 1357 True 401.666667 608 88.847667 996 3081 3 chr2A.!!$R3 2085

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.034896 TTTCAACAGGAGGACGAGGC 59.965 55.0 0.00 0.00 0.00 4.70 F
220 221 0.175760 GCGCTCTTCACCTGACCATA 59.824 55.0 0.00 0.00 0.00 2.74 F
225 226 0.181350 CTTCACCTGACCATAGGGCC 59.819 60.0 0.00 0.00 42.35 5.80 F
755 769 0.317160 TGCGACCTCACTGTACAAGG 59.683 55.0 10.05 10.05 36.21 3.61 F
2046 2218 0.108186 CTATTGCTCTGGCCACGACA 60.108 55.0 0.00 0.00 37.74 4.35 F
2451 4097 0.038166 TCAAGAACATCCACAGGGGC 59.962 55.0 0.00 0.00 36.21 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1173 1212 0.036010 CTGATGAAACCACGCCCTCT 60.036 55.000 0.00 0.00 0.00 3.69 R
1990 2160 0.252479 AAGCCAGCCATCTGTCTCAG 59.748 55.000 0.00 0.00 38.66 3.35 R
2032 2204 2.507110 TAAGCTGTCGTGGCCAGAGC 62.507 60.000 5.11 11.96 38.76 4.09 R
2416 4062 1.464608 CTTGATGTGTACGGGCAACAG 59.535 52.381 0.00 0.00 39.74 3.16 R
2865 4541 0.951558 ACGCTTCCGCAGTTCATTTT 59.048 45.000 0.00 0.00 38.22 1.82 R
3786 5491 1.680989 GCCGGCATGGGTTTAAGGT 60.681 57.895 24.80 0.00 38.63 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.982130 ATCGAGGTGGCAGTGGTC 59.018 61.111 0.00 0.00 0.00 4.02
18 19 3.006756 ATCGAGGTGGCAGTGGTCG 62.007 63.158 0.00 0.00 0.00 4.79
19 20 3.680786 CGAGGTGGCAGTGGTCGA 61.681 66.667 0.00 0.00 32.32 4.20
20 21 2.982130 GAGGTGGCAGTGGTCGAT 59.018 61.111 0.00 0.00 0.00 3.59
21 22 1.448540 GAGGTGGCAGTGGTCGATG 60.449 63.158 0.00 0.00 0.00 3.84
22 23 3.127533 GGTGGCAGTGGTCGATGC 61.128 66.667 0.00 0.00 41.80 3.91
26 27 2.265739 GCAGTGGTCGATGCCTGA 59.734 61.111 11.06 0.00 36.41 3.86
27 28 1.812922 GCAGTGGTCGATGCCTGAG 60.813 63.158 11.06 0.00 36.41 3.35
28 29 1.153489 CAGTGGTCGATGCCTGAGG 60.153 63.158 0.00 0.00 0.00 3.86
41 42 2.106477 CCTGAGGCAAGGAAGAAGAC 57.894 55.000 0.05 0.00 40.02 3.01
42 43 1.349026 CCTGAGGCAAGGAAGAAGACA 59.651 52.381 0.05 0.00 40.02 3.41
43 44 2.026449 CCTGAGGCAAGGAAGAAGACAT 60.026 50.000 0.05 0.00 40.02 3.06
44 45 3.008330 CTGAGGCAAGGAAGAAGACATG 58.992 50.000 0.00 0.00 0.00 3.21
45 46 2.290514 TGAGGCAAGGAAGAAGACATGG 60.291 50.000 0.00 0.00 0.00 3.66
46 47 1.005215 AGGCAAGGAAGAAGACATGGG 59.995 52.381 0.00 0.00 0.00 4.00
47 48 1.272147 GGCAAGGAAGAAGACATGGGT 60.272 52.381 0.00 0.00 0.00 4.51
48 49 1.815003 GCAAGGAAGAAGACATGGGTG 59.185 52.381 0.00 0.00 0.00 4.61
49 50 2.553028 GCAAGGAAGAAGACATGGGTGA 60.553 50.000 0.00 0.00 0.00 4.02
50 51 3.077359 CAAGGAAGAAGACATGGGTGAC 58.923 50.000 0.00 0.00 0.00 3.67
51 52 1.276421 AGGAAGAAGACATGGGTGACG 59.724 52.381 0.00 0.00 0.00 4.35
52 53 1.676014 GGAAGAAGACATGGGTGACGG 60.676 57.143 0.00 0.00 0.00 4.79
53 54 1.002087 GAAGAAGACATGGGTGACGGT 59.998 52.381 0.00 0.00 0.00 4.83
54 55 0.321671 AGAAGACATGGGTGACGGTG 59.678 55.000 0.00 0.00 0.00 4.94
55 56 0.320374 GAAGACATGGGTGACGGTGA 59.680 55.000 0.00 0.00 0.00 4.02
56 57 0.984230 AAGACATGGGTGACGGTGAT 59.016 50.000 0.00 0.00 0.00 3.06
57 58 0.984230 AGACATGGGTGACGGTGATT 59.016 50.000 0.00 0.00 0.00 2.57
58 59 1.351017 AGACATGGGTGACGGTGATTT 59.649 47.619 0.00 0.00 0.00 2.17
59 60 1.468520 GACATGGGTGACGGTGATTTG 59.531 52.381 0.00 0.00 0.00 2.32
60 61 0.171007 CATGGGTGACGGTGATTTGC 59.829 55.000 0.00 0.00 0.00 3.68
61 62 1.305219 ATGGGTGACGGTGATTTGCG 61.305 55.000 0.00 0.00 0.00 4.85
62 63 2.686816 GGGTGACGGTGATTTGCGG 61.687 63.158 0.00 0.00 0.00 5.69
63 64 1.964373 GGTGACGGTGATTTGCGGT 60.964 57.895 0.00 0.00 0.00 5.68
64 65 1.206578 GTGACGGTGATTTGCGGTG 59.793 57.895 0.00 0.00 0.00 4.94
65 66 1.069935 TGACGGTGATTTGCGGTGA 59.930 52.632 0.00 0.00 0.00 4.02
66 67 1.225376 TGACGGTGATTTGCGGTGAC 61.225 55.000 0.00 0.00 0.00 3.67
67 68 1.908066 GACGGTGATTTGCGGTGACC 61.908 60.000 0.00 0.00 0.00 4.02
68 69 2.686816 CGGTGATTTGCGGTGACCC 61.687 63.158 0.00 0.00 0.00 4.46
69 70 1.602323 GGTGATTTGCGGTGACCCA 60.602 57.895 0.00 0.00 0.00 4.51
70 71 1.175983 GGTGATTTGCGGTGACCCAA 61.176 55.000 0.00 0.00 0.00 4.12
71 72 0.671251 GTGATTTGCGGTGACCCAAA 59.329 50.000 16.74 16.74 35.64 3.28
72 73 0.958091 TGATTTGCGGTGACCCAAAG 59.042 50.000 18.44 0.00 34.77 2.77
73 74 1.243902 GATTTGCGGTGACCCAAAGA 58.756 50.000 18.44 3.20 34.77 2.52
74 75 1.611491 GATTTGCGGTGACCCAAAGAA 59.389 47.619 18.44 2.64 34.77 2.52
75 76 1.475403 TTTGCGGTGACCCAAAGAAA 58.525 45.000 12.30 0.00 0.00 2.52
76 77 1.698506 TTGCGGTGACCCAAAGAAAT 58.301 45.000 0.00 0.00 0.00 2.17
77 78 1.698506 TGCGGTGACCCAAAGAAATT 58.301 45.000 0.00 0.00 0.00 1.82
78 79 1.611491 TGCGGTGACCCAAAGAAATTC 59.389 47.619 0.00 0.00 0.00 2.17
79 80 1.611491 GCGGTGACCCAAAGAAATTCA 59.389 47.619 0.00 0.00 0.00 2.57
80 81 2.231235 GCGGTGACCCAAAGAAATTCAT 59.769 45.455 0.00 0.00 0.00 2.57
81 82 3.306019 GCGGTGACCCAAAGAAATTCATT 60.306 43.478 0.00 0.00 0.00 2.57
82 83 4.799255 GCGGTGACCCAAAGAAATTCATTT 60.799 41.667 0.00 0.00 0.00 2.32
83 84 5.296748 CGGTGACCCAAAGAAATTCATTTT 58.703 37.500 0.00 0.00 0.00 1.82
84 85 5.405269 CGGTGACCCAAAGAAATTCATTTTC 59.595 40.000 0.00 0.00 43.45 2.29
85 86 5.700832 GGTGACCCAAAGAAATTCATTTTCC 59.299 40.000 0.00 0.00 44.06 3.13
86 87 6.287525 GTGACCCAAAGAAATTCATTTTCCA 58.712 36.000 0.00 0.00 44.06 3.53
87 88 6.424812 GTGACCCAAAGAAATTCATTTTCCAG 59.575 38.462 0.00 0.00 44.06 3.86
88 89 5.868454 ACCCAAAGAAATTCATTTTCCAGG 58.132 37.500 0.00 0.00 44.06 4.45
89 90 5.606329 ACCCAAAGAAATTCATTTTCCAGGA 59.394 36.000 0.00 0.00 44.06 3.86
90 91 6.101005 ACCCAAAGAAATTCATTTTCCAGGAA 59.899 34.615 0.00 0.00 44.06 3.36
91 92 7.170277 CCCAAAGAAATTCATTTTCCAGGAAT 58.830 34.615 1.58 0.00 44.06 3.01
92 93 7.120138 CCCAAAGAAATTCATTTTCCAGGAATG 59.880 37.037 1.58 0.00 44.06 2.67
93 94 7.662669 CCAAAGAAATTCATTTTCCAGGAATGT 59.337 33.333 1.58 0.00 44.06 2.71
94 95 9.709495 CAAAGAAATTCATTTTCCAGGAATGTA 57.291 29.630 1.58 0.00 44.06 2.29
98 99 9.468532 GAAATTCATTTTCCAGGAATGTATAGC 57.531 33.333 1.58 0.00 38.22 2.97
99 100 8.773033 AATTCATTTTCCAGGAATGTATAGCT 57.227 30.769 1.58 0.00 36.23 3.32
100 101 7.572523 TTCATTTTCCAGGAATGTATAGCTG 57.427 36.000 1.58 0.00 36.23 4.24
101 102 6.899089 TCATTTTCCAGGAATGTATAGCTGA 58.101 36.000 1.58 0.00 36.23 4.26
102 103 6.994496 TCATTTTCCAGGAATGTATAGCTGAG 59.006 38.462 1.58 0.00 36.23 3.35
103 104 4.342862 TTCCAGGAATGTATAGCTGAGC 57.657 45.455 0.00 0.00 0.00 4.26
104 105 2.297315 TCCAGGAATGTATAGCTGAGCG 59.703 50.000 0.00 0.00 0.00 5.03
105 106 2.297315 CCAGGAATGTATAGCTGAGCGA 59.703 50.000 0.00 0.00 0.00 4.93
106 107 3.573598 CAGGAATGTATAGCTGAGCGAG 58.426 50.000 0.00 0.00 0.00 5.03
107 108 2.560542 AGGAATGTATAGCTGAGCGAGG 59.439 50.000 0.00 0.00 0.00 4.63
108 109 2.297597 GGAATGTATAGCTGAGCGAGGT 59.702 50.000 0.00 0.00 36.09 3.85
109 110 3.312828 GAATGTATAGCTGAGCGAGGTG 58.687 50.000 0.00 0.00 33.31 4.00
110 111 2.052782 TGTATAGCTGAGCGAGGTGA 57.947 50.000 0.00 0.00 33.31 4.02
111 112 2.375146 TGTATAGCTGAGCGAGGTGAA 58.625 47.619 0.00 0.00 33.31 3.18
112 113 2.758423 TGTATAGCTGAGCGAGGTGAAA 59.242 45.455 0.00 0.00 33.31 2.69
113 114 2.301577 ATAGCTGAGCGAGGTGAAAC 57.698 50.000 0.00 0.00 33.31 2.78
114 115 1.257743 TAGCTGAGCGAGGTGAAACT 58.742 50.000 0.00 0.00 36.74 2.66
115 116 0.037790 AGCTGAGCGAGGTGAAACTC 60.038 55.000 0.00 0.00 36.74 3.01
116 117 0.037790 GCTGAGCGAGGTGAAACTCT 60.038 55.000 0.00 0.00 36.74 3.24
117 118 1.606737 GCTGAGCGAGGTGAAACTCTT 60.607 52.381 0.00 0.00 36.74 2.85
118 119 2.064762 CTGAGCGAGGTGAAACTCTTG 58.935 52.381 0.00 0.00 36.74 3.02
119 120 1.270305 TGAGCGAGGTGAAACTCTTGG 60.270 52.381 0.00 0.00 36.74 3.61
120 121 1.000955 GAGCGAGGTGAAACTCTTGGA 59.999 52.381 0.00 0.00 36.74 3.53
121 122 1.149148 GCGAGGTGAAACTCTTGGAC 58.851 55.000 0.00 0.00 36.74 4.02
122 123 1.540363 GCGAGGTGAAACTCTTGGACA 60.540 52.381 0.00 0.00 36.74 4.02
123 124 2.833794 CGAGGTGAAACTCTTGGACAA 58.166 47.619 0.00 0.00 36.74 3.18
124 125 2.802816 CGAGGTGAAACTCTTGGACAAG 59.197 50.000 5.72 5.72 39.71 3.16
125 126 3.492656 CGAGGTGAAACTCTTGGACAAGA 60.493 47.826 13.56 13.56 44.47 3.02
126 127 4.646572 GAGGTGAAACTCTTGGACAAGAT 58.353 43.478 14.50 1.10 45.40 2.40
127 128 5.053978 AGGTGAAACTCTTGGACAAGATT 57.946 39.130 14.50 7.11 45.40 2.40
128 129 5.449553 AGGTGAAACTCTTGGACAAGATTT 58.550 37.500 14.50 12.43 45.40 2.17
129 130 5.532779 AGGTGAAACTCTTGGACAAGATTTC 59.467 40.000 24.11 24.11 45.40 2.17
130 131 5.299279 GGTGAAACTCTTGGACAAGATTTCA 59.701 40.000 26.55 26.55 45.40 2.69
131 132 6.183360 GGTGAAACTCTTGGACAAGATTTCAA 60.183 38.462 28.86 20.17 44.46 2.69
132 133 6.693113 GTGAAACTCTTGGACAAGATTTCAAC 59.307 38.462 28.86 23.50 44.46 3.18
133 134 6.376864 TGAAACTCTTGGACAAGATTTCAACA 59.623 34.615 27.24 19.84 45.40 3.33
134 135 6.382869 AACTCTTGGACAAGATTTCAACAG 57.617 37.500 14.50 4.15 45.40 3.16
135 136 4.823989 ACTCTTGGACAAGATTTCAACAGG 59.176 41.667 14.50 3.52 45.40 4.00
136 137 5.047566 TCTTGGACAAGATTTCAACAGGA 57.952 39.130 10.52 0.00 42.06 3.86
137 138 5.065914 TCTTGGACAAGATTTCAACAGGAG 58.934 41.667 10.52 0.00 42.06 3.69
138 139 3.754965 TGGACAAGATTTCAACAGGAGG 58.245 45.455 0.00 0.00 0.00 4.30
139 140 3.394274 TGGACAAGATTTCAACAGGAGGA 59.606 43.478 0.00 0.00 0.00 3.71
140 141 3.753797 GGACAAGATTTCAACAGGAGGAC 59.246 47.826 0.00 0.00 0.00 3.85
141 142 3.403038 ACAAGATTTCAACAGGAGGACG 58.597 45.455 0.00 0.00 0.00 4.79
142 143 3.071023 ACAAGATTTCAACAGGAGGACGA 59.929 43.478 0.00 0.00 0.00 4.20
143 144 3.601443 AGATTTCAACAGGAGGACGAG 57.399 47.619 0.00 0.00 0.00 4.18
144 145 2.234908 AGATTTCAACAGGAGGACGAGG 59.765 50.000 0.00 0.00 0.00 4.63
145 146 0.034896 TTTCAACAGGAGGACGAGGC 59.965 55.000 0.00 0.00 0.00 4.70
146 147 2.125912 CAACAGGAGGACGAGGCG 60.126 66.667 0.00 0.00 0.00 5.52
147 148 4.070552 AACAGGAGGACGAGGCGC 62.071 66.667 0.00 0.00 0.00 6.53
149 150 2.829003 CAGGAGGACGAGGCGCTA 60.829 66.667 7.64 0.00 0.00 4.26
150 151 2.517402 AGGAGGACGAGGCGCTAG 60.517 66.667 7.64 0.98 0.00 3.42
151 152 4.273257 GGAGGACGAGGCGCTAGC 62.273 72.222 7.64 4.06 44.18 3.42
185 186 3.896133 GGCAGCACCATCGGCATG 61.896 66.667 0.00 0.00 38.86 4.06
186 187 2.825387 GCAGCACCATCGGCATGA 60.825 61.111 0.00 0.00 30.57 3.07
187 188 2.409055 GCAGCACCATCGGCATGAA 61.409 57.895 0.00 0.00 30.57 2.57
188 189 1.430632 CAGCACCATCGGCATGAAC 59.569 57.895 0.00 0.00 30.57 3.18
189 190 1.028330 CAGCACCATCGGCATGAACT 61.028 55.000 0.00 0.00 30.57 3.01
190 191 1.028330 AGCACCATCGGCATGAACTG 61.028 55.000 0.00 0.00 30.57 3.16
191 192 1.026182 GCACCATCGGCATGAACTGA 61.026 55.000 0.00 0.00 30.57 3.41
192 193 1.012086 CACCATCGGCATGAACTGAG 58.988 55.000 0.00 0.00 30.57 3.35
193 194 0.745845 ACCATCGGCATGAACTGAGC 60.746 55.000 0.00 0.00 30.57 4.26
194 195 1.640069 CATCGGCATGAACTGAGCG 59.360 57.895 0.00 0.00 30.57 5.03
195 196 1.086067 CATCGGCATGAACTGAGCGT 61.086 55.000 0.00 0.00 30.57 5.07
196 197 0.807667 ATCGGCATGAACTGAGCGTC 60.808 55.000 0.00 0.00 0.00 5.19
197 198 2.792290 CGGCATGAACTGAGCGTCG 61.792 63.158 0.00 0.00 0.00 5.12
198 199 2.456119 GGCATGAACTGAGCGTCGG 61.456 63.158 0.00 0.00 0.00 4.79
199 200 3.084579 CATGAACTGAGCGTCGGC 58.915 61.111 0.00 0.00 40.37 5.54
211 212 3.482783 GTCGGCTGCGCTCTTCAC 61.483 66.667 9.73 0.00 0.00 3.18
212 213 4.742201 TCGGCTGCGCTCTTCACC 62.742 66.667 9.73 0.00 0.00 4.02
213 214 4.749310 CGGCTGCGCTCTTCACCT 62.749 66.667 9.73 0.00 0.00 4.00
214 215 3.123620 GGCTGCGCTCTTCACCTG 61.124 66.667 9.73 0.00 0.00 4.00
215 216 2.047844 GCTGCGCTCTTCACCTGA 60.048 61.111 9.73 0.00 0.00 3.86
216 217 2.386660 GCTGCGCTCTTCACCTGAC 61.387 63.158 9.73 0.00 0.00 3.51
217 218 1.739562 CTGCGCTCTTCACCTGACC 60.740 63.158 9.73 0.00 0.00 4.02
218 219 2.343758 GCGCTCTTCACCTGACCA 59.656 61.111 0.00 0.00 0.00 4.02
219 220 1.078848 GCGCTCTTCACCTGACCAT 60.079 57.895 0.00 0.00 0.00 3.55
220 221 0.175760 GCGCTCTTCACCTGACCATA 59.824 55.000 0.00 0.00 0.00 2.74
221 222 1.804372 GCGCTCTTCACCTGACCATAG 60.804 57.143 0.00 0.00 0.00 2.23
222 223 1.202463 CGCTCTTCACCTGACCATAGG 60.202 57.143 0.00 0.00 43.71 2.57
223 224 1.139853 GCTCTTCACCTGACCATAGGG 59.860 57.143 0.00 0.00 42.35 3.53
224 225 1.139853 CTCTTCACCTGACCATAGGGC 59.860 57.143 0.00 0.00 42.35 5.19
225 226 0.181350 CTTCACCTGACCATAGGGCC 59.819 60.000 0.00 0.00 42.35 5.80
226 227 1.279025 TTCACCTGACCATAGGGCCC 61.279 60.000 16.46 16.46 42.35 5.80
227 228 2.368329 ACCTGACCATAGGGCCCC 60.368 66.667 21.43 1.37 42.35 5.80
228 229 3.560251 CCTGACCATAGGGCCCCG 61.560 72.222 21.43 7.43 37.90 5.73
229 230 2.768344 CTGACCATAGGGCCCCGT 60.768 66.667 21.43 9.98 37.90 5.28
230 231 2.285818 TGACCATAGGGCCCCGTT 60.286 61.111 21.43 1.59 37.90 4.44
231 232 2.192175 GACCATAGGGCCCCGTTG 59.808 66.667 21.43 13.90 37.90 4.10
232 233 3.415650 GACCATAGGGCCCCGTTGG 62.416 68.421 26.27 26.27 37.90 3.77
233 234 3.416880 CCATAGGGCCCCGTTGGT 61.417 66.667 21.43 0.00 36.04 3.67
234 235 2.192175 CATAGGGCCCCGTTGGTC 59.808 66.667 21.43 0.00 38.35 4.02
235 236 2.285818 ATAGGGCCCCGTTGGTCA 60.286 61.111 21.43 0.00 42.20 4.02
236 237 1.926489 ATAGGGCCCCGTTGGTCAA 60.926 57.895 21.43 0.00 42.20 3.18
237 238 2.206182 ATAGGGCCCCGTTGGTCAAC 62.206 60.000 21.43 3.91 42.20 3.18
238 239 4.589675 GGGCCCCGTTGGTCAACA 62.590 66.667 12.23 0.00 42.20 3.33
239 240 2.519780 GGCCCCGTTGGTCAACAA 60.520 61.111 13.35 0.00 41.20 2.83
240 241 2.128507 GGCCCCGTTGGTCAACAAA 61.129 57.895 13.35 0.00 41.58 2.83
241 242 1.066752 GCCCCGTTGGTCAACAAAC 59.933 57.895 13.35 0.00 41.58 2.93
242 243 1.737201 CCCCGTTGGTCAACAAACC 59.263 57.895 13.35 0.00 41.58 3.27
250 251 3.859411 TGGTCAACAAACCACTTTGAC 57.141 42.857 5.33 5.33 44.40 3.18
254 255 5.701029 GTCAACAAACCACTTTGACAATG 57.299 39.130 8.46 0.00 45.60 2.82
255 256 5.167845 GTCAACAAACCACTTTGACAATGT 58.832 37.500 8.46 1.02 45.60 2.71
256 257 5.288472 GTCAACAAACCACTTTGACAATGTC 59.712 40.000 6.41 6.41 45.60 3.06
257 258 4.385358 ACAAACCACTTTGACAATGTCC 57.615 40.909 11.24 0.00 39.43 4.02
258 259 3.766591 ACAAACCACTTTGACAATGTCCA 59.233 39.130 11.24 0.00 39.43 4.02
259 260 4.111916 CAAACCACTTTGACAATGTCCAC 58.888 43.478 11.24 0.00 39.43 4.02
260 261 3.011566 ACCACTTTGACAATGTCCACA 57.988 42.857 11.24 0.00 0.00 4.17
261 262 3.565307 ACCACTTTGACAATGTCCACAT 58.435 40.909 11.24 0.00 38.41 3.21
262 263 3.569701 ACCACTTTGACAATGTCCACATC 59.430 43.478 11.24 0.00 35.10 3.06
263 264 3.569277 CCACTTTGACAATGTCCACATCA 59.431 43.478 11.24 0.00 35.10 3.07
264 265 4.320714 CCACTTTGACAATGTCCACATCAG 60.321 45.833 11.24 0.00 35.10 2.90
265 266 3.254166 ACTTTGACAATGTCCACATCAGC 59.746 43.478 11.24 0.00 35.10 4.26
266 267 2.565046 TGACAATGTCCACATCAGCA 57.435 45.000 11.24 0.00 35.10 4.41
267 268 2.861274 TGACAATGTCCACATCAGCAA 58.139 42.857 11.24 0.00 35.10 3.91
268 269 3.220940 TGACAATGTCCACATCAGCAAA 58.779 40.909 11.24 0.00 35.10 3.68
269 270 3.004629 TGACAATGTCCACATCAGCAAAC 59.995 43.478 11.24 0.00 35.10 2.93
270 271 2.297033 ACAATGTCCACATCAGCAAACC 59.703 45.455 0.00 0.00 35.10 3.27
271 272 2.291209 ATGTCCACATCAGCAAACCA 57.709 45.000 0.00 0.00 28.78 3.67
272 273 1.317613 TGTCCACATCAGCAAACCAC 58.682 50.000 0.00 0.00 0.00 4.16
273 274 0.598065 GTCCACATCAGCAAACCACC 59.402 55.000 0.00 0.00 0.00 4.61
274 275 0.478072 TCCACATCAGCAAACCACCT 59.522 50.000 0.00 0.00 0.00 4.00
275 276 0.599558 CCACATCAGCAAACCACCTG 59.400 55.000 0.00 0.00 0.00 4.00
276 277 1.608055 CACATCAGCAAACCACCTGA 58.392 50.000 0.00 0.00 41.81 3.86
277 278 2.165167 CACATCAGCAAACCACCTGAT 58.835 47.619 0.00 0.00 46.67 2.90
278 279 3.346315 CACATCAGCAAACCACCTGATA 58.654 45.455 3.14 0.00 44.61 2.15
279 280 3.758023 CACATCAGCAAACCACCTGATAA 59.242 43.478 3.14 0.00 44.61 1.75
280 281 4.218200 CACATCAGCAAACCACCTGATAAA 59.782 41.667 3.14 0.00 44.61 1.40
281 282 4.832266 ACATCAGCAAACCACCTGATAAAA 59.168 37.500 3.14 0.00 44.61 1.52
282 283 5.481473 ACATCAGCAAACCACCTGATAAAAT 59.519 36.000 3.14 0.00 44.61 1.82
283 284 5.643379 TCAGCAAACCACCTGATAAAATC 57.357 39.130 0.00 0.00 33.44 2.17
284 285 4.462483 TCAGCAAACCACCTGATAAAATCC 59.538 41.667 0.00 0.00 33.44 3.01
285 286 3.443681 AGCAAACCACCTGATAAAATCCG 59.556 43.478 0.00 0.00 0.00 4.18
286 287 3.192633 GCAAACCACCTGATAAAATCCGT 59.807 43.478 0.00 0.00 0.00 4.69
287 288 4.674362 GCAAACCACCTGATAAAATCCGTC 60.674 45.833 0.00 0.00 0.00 4.79
288 289 3.277142 ACCACCTGATAAAATCCGTCC 57.723 47.619 0.00 0.00 0.00 4.79
289 290 2.574369 ACCACCTGATAAAATCCGTCCA 59.426 45.455 0.00 0.00 0.00 4.02
290 291 3.009695 ACCACCTGATAAAATCCGTCCAA 59.990 43.478 0.00 0.00 0.00 3.53
291 292 3.627577 CCACCTGATAAAATCCGTCCAAG 59.372 47.826 0.00 0.00 0.00 3.61
292 293 4.513442 CACCTGATAAAATCCGTCCAAGA 58.487 43.478 0.00 0.00 0.00 3.02
293 294 4.332819 CACCTGATAAAATCCGTCCAAGAC 59.667 45.833 0.00 0.00 0.00 3.01
294 295 4.225267 ACCTGATAAAATCCGTCCAAGACT 59.775 41.667 0.00 0.00 0.00 3.24
295 296 5.424252 ACCTGATAAAATCCGTCCAAGACTA 59.576 40.000 0.00 0.00 0.00 2.59
296 297 6.099845 ACCTGATAAAATCCGTCCAAGACTAT 59.900 38.462 0.00 0.00 0.00 2.12
297 298 6.992715 CCTGATAAAATCCGTCCAAGACTATT 59.007 38.462 0.00 0.00 0.00 1.73
298 299 7.499232 CCTGATAAAATCCGTCCAAGACTATTT 59.501 37.037 0.00 0.00 31.78 1.40
299 300 8.433421 TGATAAAATCCGTCCAAGACTATTTC 57.567 34.615 5.79 0.00 30.36 2.17
300 301 8.265055 TGATAAAATCCGTCCAAGACTATTTCT 58.735 33.333 5.79 0.00 35.32 2.52
301 302 6.743575 AAAATCCGTCCAAGACTATTTCTG 57.256 37.500 5.79 0.00 33.46 3.02
302 303 5.677319 AATCCGTCCAAGACTATTTCTGA 57.323 39.130 0.00 0.00 33.46 3.27
303 304 5.677319 ATCCGTCCAAGACTATTTCTGAA 57.323 39.130 0.00 0.00 33.46 3.02
304 305 4.817517 TCCGTCCAAGACTATTTCTGAAC 58.182 43.478 0.00 0.00 33.46 3.18
305 306 4.282449 TCCGTCCAAGACTATTTCTGAACA 59.718 41.667 0.00 0.00 33.46 3.18
306 307 4.627467 CCGTCCAAGACTATTTCTGAACAG 59.373 45.833 0.00 0.00 33.46 3.16
307 308 5.230942 CGTCCAAGACTATTTCTGAACAGT 58.769 41.667 4.06 4.06 33.46 3.55
308 309 6.387465 CGTCCAAGACTATTTCTGAACAGTA 58.613 40.000 4.34 0.00 33.46 2.74
309 310 7.036220 CGTCCAAGACTATTTCTGAACAGTAT 58.964 38.462 4.34 0.00 33.46 2.12
310 311 7.545965 CGTCCAAGACTATTTCTGAACAGTATT 59.454 37.037 4.34 5.08 33.46 1.89
311 312 8.660373 GTCCAAGACTATTTCTGAACAGTATTG 58.340 37.037 20.85 20.85 39.02 1.90
313 314 8.777865 CAAGACTATTTCTGAACAGTATTGGA 57.222 34.615 20.42 0.00 36.86 3.53
314 315 9.388506 CAAGACTATTTCTGAACAGTATTGGAT 57.611 33.333 20.42 2.33 36.86 3.41
321 322 9.775854 ATTTCTGAACAGTATTGGATAGATCAG 57.224 33.333 0.00 0.00 34.54 2.90
322 323 7.295322 TCTGAACAGTATTGGATAGATCAGG 57.705 40.000 0.00 0.00 34.14 3.86
323 324 6.268617 TCTGAACAGTATTGGATAGATCAGGG 59.731 42.308 0.00 0.00 34.14 4.45
324 325 5.307976 TGAACAGTATTGGATAGATCAGGGG 59.692 44.000 0.00 0.00 0.00 4.79
325 326 4.171234 ACAGTATTGGATAGATCAGGGGG 58.829 47.826 0.00 0.00 0.00 5.40
326 327 4.171234 CAGTATTGGATAGATCAGGGGGT 58.829 47.826 0.00 0.00 0.00 4.95
327 328 4.599241 CAGTATTGGATAGATCAGGGGGTT 59.401 45.833 0.00 0.00 0.00 4.11
328 329 5.785423 CAGTATTGGATAGATCAGGGGGTTA 59.215 44.000 0.00 0.00 0.00 2.85
329 330 6.272324 CAGTATTGGATAGATCAGGGGGTTAA 59.728 42.308 0.00 0.00 0.00 2.01
330 331 5.850046 ATTGGATAGATCAGGGGGTTAAG 57.150 43.478 0.00 0.00 0.00 1.85
331 332 4.295905 TGGATAGATCAGGGGGTTAAGT 57.704 45.455 0.00 0.00 0.00 2.24
332 333 3.973973 TGGATAGATCAGGGGGTTAAGTG 59.026 47.826 0.00 0.00 0.00 3.16
333 334 4.232091 GGATAGATCAGGGGGTTAAGTGA 58.768 47.826 0.00 0.00 0.00 3.41
334 335 4.658901 GGATAGATCAGGGGGTTAAGTGAA 59.341 45.833 0.00 0.00 0.00 3.18
335 336 5.454897 GGATAGATCAGGGGGTTAAGTGAAC 60.455 48.000 0.00 0.00 37.31 3.18
362 363 5.476091 AAAAATTCAAGGGGTTATGCGAA 57.524 34.783 0.00 0.00 0.00 4.70
363 364 4.450082 AAATTCAAGGGGTTATGCGAAC 57.550 40.909 0.00 0.00 0.00 3.95
364 365 2.570415 TTCAAGGGGTTATGCGAACA 57.430 45.000 3.96 0.00 0.00 3.18
365 366 2.570415 TCAAGGGGTTATGCGAACAA 57.430 45.000 3.96 0.00 0.00 2.83
366 367 2.156098 TCAAGGGGTTATGCGAACAAC 58.844 47.619 3.96 0.00 0.00 3.32
367 368 1.201414 CAAGGGGTTATGCGAACAACC 59.799 52.381 0.00 0.00 42.94 3.77
372 373 3.586100 GGTTATGCGAACAACCCATTT 57.414 42.857 0.00 0.00 38.63 2.32
373 374 3.920446 GGTTATGCGAACAACCCATTTT 58.080 40.909 0.00 0.00 38.63 1.82
374 375 5.061920 GGTTATGCGAACAACCCATTTTA 57.938 39.130 0.00 0.00 38.63 1.52
375 376 5.656480 GGTTATGCGAACAACCCATTTTAT 58.344 37.500 0.00 0.00 38.63 1.40
376 377 6.103330 GGTTATGCGAACAACCCATTTTATT 58.897 36.000 0.00 0.00 38.63 1.40
377 378 6.254804 GGTTATGCGAACAACCCATTTTATTC 59.745 38.462 0.00 0.00 38.63 1.75
378 379 4.855715 TGCGAACAACCCATTTTATTCA 57.144 36.364 0.00 0.00 0.00 2.57
379 380 4.804108 TGCGAACAACCCATTTTATTCAG 58.196 39.130 0.00 0.00 0.00 3.02
380 381 4.173256 GCGAACAACCCATTTTATTCAGG 58.827 43.478 0.00 0.00 0.00 3.86
381 382 4.743493 CGAACAACCCATTTTATTCAGGG 58.257 43.478 0.00 0.00 46.96 4.45
382 383 4.461081 CGAACAACCCATTTTATTCAGGGA 59.539 41.667 2.90 0.00 44.30 4.20
383 384 5.047660 CGAACAACCCATTTTATTCAGGGAA 60.048 40.000 2.90 0.00 44.30 3.97
384 385 6.358974 AACAACCCATTTTATTCAGGGAAG 57.641 37.500 2.90 0.00 44.30 3.46
385 386 5.402630 ACAACCCATTTTATTCAGGGAAGT 58.597 37.500 2.90 0.00 44.30 3.01
386 387 6.557568 ACAACCCATTTTATTCAGGGAAGTA 58.442 36.000 2.90 0.00 44.30 2.24
387 388 7.013834 ACAACCCATTTTATTCAGGGAAGTAA 58.986 34.615 2.90 0.00 44.30 2.24
388 389 7.511028 ACAACCCATTTTATTCAGGGAAGTAAA 59.489 33.333 2.90 0.00 44.30 2.01
389 390 8.371699 CAACCCATTTTATTCAGGGAAGTAAAA 58.628 33.333 2.90 0.00 44.30 1.52
390 391 8.679344 ACCCATTTTATTCAGGGAAGTAAAAT 57.321 30.769 2.90 0.00 44.30 1.82
391 392 9.777008 ACCCATTTTATTCAGGGAAGTAAAATA 57.223 29.630 2.90 0.00 44.30 1.40
668 671 1.155889 TTTATGTGGCACAGCACGAG 58.844 50.000 26.04 0.00 41.80 4.18
669 672 1.298157 TTATGTGGCACAGCACGAGC 61.298 55.000 26.04 0.00 41.80 5.03
700 709 1.142314 TACCGTACGGCTCAATGGC 59.858 57.895 33.62 0.00 39.32 4.40
755 769 0.317160 TGCGACCTCACTGTACAAGG 59.683 55.000 10.05 10.05 36.21 3.61
761 775 0.602638 CTCACTGTACAAGGCGCCAA 60.603 55.000 31.54 8.10 0.00 4.52
767 788 0.796927 GTACAAGGCGCCAAAGAGAC 59.203 55.000 31.54 14.56 0.00 3.36
825 846 3.491639 GTGTACAACAATCGTGCACACTA 59.508 43.478 18.64 1.36 45.74 2.74
829 850 2.169832 ACAATCGTGCACACTAGCTT 57.830 45.000 18.64 0.00 34.99 3.74
833 854 1.508632 TCGTGCACACTAGCTTTTCC 58.491 50.000 18.64 0.00 34.99 3.13
834 855 1.070134 TCGTGCACACTAGCTTTTCCT 59.930 47.619 18.64 0.00 34.99 3.36
835 856 1.873591 CGTGCACACTAGCTTTTCCTT 59.126 47.619 18.64 0.00 34.99 3.36
842 863 2.926838 CACTAGCTTTTCCTTCTCGCTC 59.073 50.000 0.00 0.00 32.49 5.03
843 864 2.189342 CTAGCTTTTCCTTCTCGCTCG 58.811 52.381 0.00 0.00 32.49 5.03
844 865 1.016653 AGCTTTTCCTTCTCGCTCGC 61.017 55.000 0.00 0.00 0.00 5.03
845 866 1.016653 GCTTTTCCTTCTCGCTCGCT 61.017 55.000 0.00 0.00 0.00 4.93
846 867 0.995728 CTTTTCCTTCTCGCTCGCTC 59.004 55.000 0.00 0.00 0.00 5.03
895 919 3.000322 CCTTTGCGTGTATAAGAAGAGCG 60.000 47.826 0.00 0.00 0.00 5.03
916 940 4.460948 GGGACGTGTGGTAGAAATAGAA 57.539 45.455 0.00 0.00 0.00 2.10
917 941 5.019785 GGGACGTGTGGTAGAAATAGAAT 57.980 43.478 0.00 0.00 0.00 2.40
918 942 5.425630 GGGACGTGTGGTAGAAATAGAATT 58.574 41.667 0.00 0.00 0.00 2.17
919 943 5.878669 GGGACGTGTGGTAGAAATAGAATTT 59.121 40.000 0.00 0.00 0.00 1.82
920 944 6.183360 GGGACGTGTGGTAGAAATAGAATTTG 60.183 42.308 0.00 0.00 0.00 2.32
921 945 6.370718 GGACGTGTGGTAGAAATAGAATTTGT 59.629 38.462 0.00 0.00 0.00 2.83
922 946 7.360575 ACGTGTGGTAGAAATAGAATTTGTC 57.639 36.000 0.00 0.00 0.00 3.18
923 947 6.932400 ACGTGTGGTAGAAATAGAATTTGTCA 59.068 34.615 0.00 0.00 0.00 3.58
924 948 7.095355 ACGTGTGGTAGAAATAGAATTTGTCAC 60.095 37.037 0.00 0.00 0.00 3.67
925 949 7.095397 CGTGTGGTAGAAATAGAATTTGTCACA 60.095 37.037 0.00 0.00 0.00 3.58
926 950 8.230486 GTGTGGTAGAAATAGAATTTGTCACAG 58.770 37.037 0.00 0.00 32.11 3.66
1169 1208 1.225376 CTGTACGTGCTTTCGGCCAA 61.225 55.000 2.24 0.00 40.92 4.52
1170 1209 1.205820 GTACGTGCTTTCGGCCAAC 59.794 57.895 2.24 0.00 40.92 3.77
1171 1210 1.227586 TACGTGCTTTCGGCCAACA 60.228 52.632 2.24 0.00 40.92 3.33
1172 1211 1.500512 TACGTGCTTTCGGCCAACAC 61.501 55.000 2.24 1.84 40.92 3.32
1173 1212 2.829206 CGTGCTTTCGGCCAACACA 61.829 57.895 2.24 0.00 40.92 3.72
1175 1214 1.153066 TGCTTTCGGCCAACACAGA 60.153 52.632 2.24 0.00 40.92 3.41
1212 1258 3.494251 CAGCAAAGCAAACATAACCAACC 59.506 43.478 0.00 0.00 0.00 3.77
1320 1369 2.811317 CACGGCCAGAAGAGCGTC 60.811 66.667 2.24 0.00 0.00 5.19
1399 1448 4.160252 GGGAAACTTACCGAGGTATGTACA 59.840 45.833 17.55 0.00 37.79 2.90
1400 1449 5.105063 GGAAACTTACCGAGGTATGTACAC 58.895 45.833 17.55 12.60 37.79 2.90
1413 1462 6.213677 AGGTATGTACACGTATATGTTGCAG 58.786 40.000 0.00 0.00 33.85 4.41
1427 1479 1.142870 GTTGCAGGGTATGATGGCCTA 59.857 52.381 3.32 0.00 0.00 3.93
1435 1487 4.595781 AGGGTATGATGGCCTATTCGTAAA 59.404 41.667 3.32 0.00 0.00 2.01
1436 1488 5.072600 AGGGTATGATGGCCTATTCGTAAAA 59.927 40.000 3.32 0.00 0.00 1.52
1437 1489 5.944007 GGGTATGATGGCCTATTCGTAAAAT 59.056 40.000 3.32 0.00 0.00 1.82
1438 1490 6.433093 GGGTATGATGGCCTATTCGTAAAATT 59.567 38.462 3.32 0.00 0.00 1.82
1439 1491 7.361799 GGGTATGATGGCCTATTCGTAAAATTC 60.362 40.741 3.32 0.00 0.00 2.17
1440 1492 7.174253 GGTATGATGGCCTATTCGTAAAATTCA 59.826 37.037 3.32 0.00 0.00 2.57
1441 1493 7.765695 ATGATGGCCTATTCGTAAAATTCAT 57.234 32.000 3.32 0.00 0.00 2.57
1442 1494 6.969366 TGATGGCCTATTCGTAAAATTCATG 58.031 36.000 3.32 0.00 0.00 3.07
1443 1495 6.545666 TGATGGCCTATTCGTAAAATTCATGT 59.454 34.615 3.32 0.00 0.00 3.21
1444 1496 6.130298 TGGCCTATTCGTAAAATTCATGTG 57.870 37.500 3.32 0.00 0.00 3.21
1445 1497 5.883115 TGGCCTATTCGTAAAATTCATGTGA 59.117 36.000 3.32 0.00 0.00 3.58
1446 1498 6.375736 TGGCCTATTCGTAAAATTCATGTGAA 59.624 34.615 3.32 0.00 38.56 3.18
1447 1499 7.068103 TGGCCTATTCGTAAAATTCATGTGAAT 59.932 33.333 3.32 2.48 45.91 2.57
1541 1598 3.567473 GCTTGACCAGAAGCCGTC 58.433 61.111 0.00 0.00 42.23 4.79
1542 1599 1.301716 GCTTGACCAGAAGCCGTCA 60.302 57.895 0.00 0.00 42.23 4.35
1545 1602 2.935238 GCTTGACCAGAAGCCGTCAATA 60.935 50.000 3.33 0.00 45.34 1.90
1668 1746 7.882179 TCAAAAAGGGTAGAATAGTCTTTTGC 58.118 34.615 0.00 0.00 35.55 3.68
1681 1759 5.796424 AGTCTTTTGCATCCAAGTCAATT 57.204 34.783 0.00 0.00 31.52 2.32
1686 1764 8.992073 GTCTTTTGCATCCAAGTCAATTTATTT 58.008 29.630 0.00 0.00 31.52 1.40
1715 1793 5.887598 TGTTTGATCTGCAAGCTAATATGGT 59.112 36.000 0.00 0.00 38.39 3.55
1745 1823 8.315482 AGCCTTTTTAAACAACTTTAAGGTTCA 58.685 29.630 12.09 0.00 34.12 3.18
1868 2033 8.999220 AGCATACAATCAGACATCATATGTAG 57.001 34.615 1.90 0.00 45.03 2.74
1900 2065 6.861572 ACATATATTTGACGTACACATCTCCG 59.138 38.462 0.00 0.00 0.00 4.63
1930 2097 5.971895 AAAAACAAACACAAGCATGCTAG 57.028 34.783 23.00 16.30 0.00 3.42
1948 2115 7.494625 GCATGCTAGTAATTCAGTAACCAAGTA 59.505 37.037 11.37 0.00 0.00 2.24
2003 2173 3.608316 AGAAAGACTGAGACAGATGGC 57.392 47.619 5.76 0.00 35.18 4.40
2032 2204 2.076100 TGGAACTCACTTGCGCTATTG 58.924 47.619 9.73 5.81 0.00 1.90
2046 2218 0.108186 CTATTGCTCTGGCCACGACA 60.108 55.000 0.00 0.00 37.74 4.35
2053 2225 1.185618 TCTGGCCACGACAGCTTAGT 61.186 55.000 0.00 0.00 38.81 2.24
2057 2229 4.996976 CACGACAGCTTAGTGGCT 57.003 55.556 0.00 0.00 44.10 4.75
2087 2259 1.592064 TCAAATTCAGCGCTGTGACA 58.408 45.000 34.70 18.65 0.00 3.58
2167 2394 4.262079 GCGACAGGGCTCTTATGTACTTAT 60.262 45.833 0.00 0.00 0.00 1.73
2168 2395 5.048224 GCGACAGGGCTCTTATGTACTTATA 60.048 44.000 0.00 0.00 0.00 0.98
2169 2396 6.350277 GCGACAGGGCTCTTATGTACTTATAT 60.350 42.308 0.00 0.00 0.00 0.86
2170 2397 7.148120 GCGACAGGGCTCTTATGTACTTATATA 60.148 40.741 0.00 0.00 0.00 0.86
2269 2496 0.875059 GGTTTCAGCTTCCCAACTCG 59.125 55.000 0.00 0.00 0.00 4.18
2416 4062 1.457831 AGCTGGATACCGTCTCCCC 60.458 63.158 0.71 0.00 31.32 4.81
2451 4097 0.038166 TCAAGAACATCCACAGGGGC 59.962 55.000 0.00 0.00 36.21 5.80
2740 4416 4.728882 GCACTCGCGAATTCTCATTTCATT 60.729 41.667 11.33 0.00 0.00 2.57
2759 4435 3.708563 TTGGCAGTTTACTTGAGTTGC 57.291 42.857 0.00 0.00 0.00 4.17
2764 4440 4.504097 GGCAGTTTACTTGAGTTGCTTTTG 59.496 41.667 5.75 0.00 30.98 2.44
2774 4450 5.843673 TGAGTTGCTTTTGGTGTTTCATA 57.156 34.783 0.00 0.00 0.00 2.15
2775 4451 5.587289 TGAGTTGCTTTTGGTGTTTCATAC 58.413 37.500 0.00 0.00 0.00 2.39
2776 4452 5.359576 TGAGTTGCTTTTGGTGTTTCATACT 59.640 36.000 0.00 0.00 0.00 2.12
2777 4453 5.831997 AGTTGCTTTTGGTGTTTCATACTC 58.168 37.500 0.00 0.00 0.00 2.59
2778 4454 4.846779 TGCTTTTGGTGTTTCATACTCC 57.153 40.909 0.00 0.00 40.18 3.85
2779 4455 4.469657 TGCTTTTGGTGTTTCATACTCCT 58.530 39.130 0.00 0.00 40.37 3.69
2824 4500 4.898829 TGAATTAGATGGCATCAAACCG 57.101 40.909 27.93 0.00 0.00 4.44
2832 4508 1.466950 TGGCATCAAACCGTTTCGATC 59.533 47.619 0.00 0.00 0.00 3.69
2849 4525 4.650985 TCGATCGCATCTTTTGTTTCATG 58.349 39.130 11.09 0.00 0.00 3.07
2860 4536 6.054941 TCTTTTGTTTCATGAGCAGTCAGTA 58.945 36.000 0.00 0.00 35.66 2.74
2865 4541 1.272212 TCATGAGCAGTCAGTAACGCA 59.728 47.619 0.00 0.00 35.66 5.24
2904 4580 2.859538 GTTGTTGCACTCATGTTTGGTG 59.140 45.455 0.00 0.00 0.00 4.17
2940 4620 0.329261 CAGGATTGTGAGCAAGGGGA 59.671 55.000 0.00 0.00 38.10 4.81
2954 4634 1.972588 AGGGGAAGTGGATACTGCTT 58.027 50.000 0.00 0.00 37.19 3.91
2972 4652 1.812571 CTTTACGTGCTTGCCAAGGAT 59.187 47.619 6.57 0.00 0.00 3.24
3121 4803 6.016527 TCGTGAGTAAAACTGTAGACAGATGT 60.017 38.462 16.44 2.30 46.59 3.06
3169 4860 3.002102 AGAGAGGAACGAGTACGAAGTC 58.998 50.000 0.00 0.00 43.93 3.01
3174 4865 2.413897 GGAACGAGTACGAAGTCCAGAC 60.414 54.545 0.00 0.00 43.93 3.51
3189 4880 7.042321 CGAAGTCCAGACAATAAAGTTGTACAA 60.042 37.037 3.59 3.59 31.96 2.41
3190 4881 7.730364 AGTCCAGACAATAAAGTTGTACAAG 57.270 36.000 8.98 0.00 31.96 3.16
3191 4882 7.280356 AGTCCAGACAATAAAGTTGTACAAGT 58.720 34.615 8.98 9.66 31.96 3.16
3192 4883 8.426489 AGTCCAGACAATAAAGTTGTACAAGTA 58.574 33.333 16.18 6.25 31.96 2.24
3193 4884 8.493547 GTCCAGACAATAAAGTTGTACAAGTAC 58.506 37.037 16.18 2.07 36.63 2.73
3194 4885 8.426489 TCCAGACAATAAAGTTGTACAAGTACT 58.574 33.333 16.18 4.59 37.00 2.73
3195 4886 8.709646 CCAGACAATAAAGTTGTACAAGTACTC 58.290 37.037 16.18 0.70 37.00 2.59
3196 4887 9.477484 CAGACAATAAAGTTGTACAAGTACTCT 57.523 33.333 16.18 3.17 37.00 3.24
3197 4888 9.477484 AGACAATAAAGTTGTACAAGTACTCTG 57.523 33.333 16.18 13.16 37.00 3.35
3198 4889 9.257651 GACAATAAAGTTGTACAAGTACTCTGT 57.742 33.333 16.18 15.78 37.00 3.41
3202 4893 9.909644 ATAAAGTTGTACAAGTACTCTGTACTG 57.090 33.333 28.57 15.13 39.14 2.74
3203 4894 6.956202 AGTTGTACAAGTACTCTGTACTGT 57.044 37.500 28.57 18.69 39.14 3.55
3204 4895 6.736123 AGTTGTACAAGTACTCTGTACTGTG 58.264 40.000 28.57 14.07 39.14 3.66
3205 4896 6.544931 AGTTGTACAAGTACTCTGTACTGTGA 59.455 38.462 28.57 17.14 39.14 3.58
3206 4897 7.230913 AGTTGTACAAGTACTCTGTACTGTGAT 59.769 37.037 28.57 17.39 39.14 3.06
3207 4898 7.520451 TGTACAAGTACTCTGTACTGTGATT 57.480 36.000 28.57 1.07 39.14 2.57
3208 4899 7.368059 TGTACAAGTACTCTGTACTGTGATTG 58.632 38.462 28.57 12.49 39.14 2.67
3209 4900 6.406692 ACAAGTACTCTGTACTGTGATTGT 57.593 37.500 10.61 8.25 0.00 2.71
3210 4901 6.817184 ACAAGTACTCTGTACTGTGATTGTT 58.183 36.000 10.61 0.00 0.00 2.83
3211 4902 6.701841 ACAAGTACTCTGTACTGTGATTGTTG 59.298 38.462 10.61 5.96 0.00 3.33
3212 4903 6.650427 AGTACTCTGTACTGTGATTGTTGA 57.350 37.500 9.27 0.00 0.00 3.18
3213 4904 7.050970 AGTACTCTGTACTGTGATTGTTGAA 57.949 36.000 9.27 0.00 0.00 2.69
3214 4905 7.671302 AGTACTCTGTACTGTGATTGTTGAAT 58.329 34.615 9.27 0.00 0.00 2.57
3215 4906 8.150945 AGTACTCTGTACTGTGATTGTTGAATT 58.849 33.333 9.27 0.00 0.00 2.17
3216 4907 7.426929 ACTCTGTACTGTGATTGTTGAATTC 57.573 36.000 8.57 0.00 0.00 2.17
3217 4908 7.220030 ACTCTGTACTGTGATTGTTGAATTCT 58.780 34.615 7.05 0.00 0.00 2.40
3218 4909 8.367911 ACTCTGTACTGTGATTGTTGAATTCTA 58.632 33.333 7.05 0.00 0.00 2.10
3219 4910 9.376075 CTCTGTACTGTGATTGTTGAATTCTAT 57.624 33.333 7.05 0.00 0.00 1.98
3227 4918 9.605275 TGTGATTGTTGAATTCTATAAGAGAGG 57.395 33.333 7.05 0.00 34.93 3.69
3354 5056 2.042464 GGTGATGGCAGAGAGTGGATA 58.958 52.381 0.00 0.00 0.00 2.59
3573 5277 2.029369 CGTTGGGTTCGAACGGGA 59.971 61.111 21.34 7.07 41.95 5.14
3574 5278 2.025418 CGTTGGGTTCGAACGGGAG 61.025 63.158 21.34 8.35 41.95 4.30
3575 5279 1.368579 GTTGGGTTCGAACGGGAGA 59.631 57.895 21.34 3.59 0.00 3.71
3576 5280 0.669625 GTTGGGTTCGAACGGGAGAG 60.670 60.000 21.34 0.00 0.00 3.20
3605 5309 2.844348 TCAACCTAACATTCTCCCCCTC 59.156 50.000 0.00 0.00 0.00 4.30
3684 5388 7.886629 ATTGGTACATAGAGCATGTTTCATT 57.113 32.000 0.00 0.00 46.01 2.57
3693 5397 1.335780 GCATGTTTCATTGTCACGGCA 60.336 47.619 0.00 0.00 0.00 5.69
3786 5491 6.522459 GCCTATCCAGGAATCATAAGGCTTTA 60.522 42.308 4.45 0.00 45.91 1.85
4053 5758 4.091549 TCTACCACTTTCAAGTCGGGTAT 58.908 43.478 8.60 0.00 37.12 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.982130 GACCACTGCCACCTCGAT 59.018 61.111 0.00 0.00 0.00 3.59
1 2 3.680786 CGACCACTGCCACCTCGA 61.681 66.667 0.00 0.00 0.00 4.04
3 4 1.448540 CATCGACCACTGCCACCTC 60.449 63.158 0.00 0.00 0.00 3.85
4 5 2.665000 CATCGACCACTGCCACCT 59.335 61.111 0.00 0.00 0.00 4.00
9 10 1.812922 CTCAGGCATCGACCACTGC 60.813 63.158 0.00 0.00 37.66 4.40
10 11 1.153489 CCTCAGGCATCGACCACTG 60.153 63.158 5.89 5.89 0.00 3.66
11 12 3.303189 CCTCAGGCATCGACCACT 58.697 61.111 0.00 0.00 0.00 4.00
22 23 1.349026 TGTCTTCTTCCTTGCCTCAGG 59.651 52.381 0.00 0.00 34.86 3.86
23 24 2.847327 TGTCTTCTTCCTTGCCTCAG 57.153 50.000 0.00 0.00 0.00 3.35
24 25 2.290514 CCATGTCTTCTTCCTTGCCTCA 60.291 50.000 0.00 0.00 0.00 3.86
25 26 2.363683 CCATGTCTTCTTCCTTGCCTC 58.636 52.381 0.00 0.00 0.00 4.70
26 27 1.005215 CCCATGTCTTCTTCCTTGCCT 59.995 52.381 0.00 0.00 0.00 4.75
27 28 1.272147 ACCCATGTCTTCTTCCTTGCC 60.272 52.381 0.00 0.00 0.00 4.52
28 29 1.815003 CACCCATGTCTTCTTCCTTGC 59.185 52.381 0.00 0.00 0.00 4.01
29 30 3.077359 GTCACCCATGTCTTCTTCCTTG 58.923 50.000 0.00 0.00 0.00 3.61
30 31 2.289694 CGTCACCCATGTCTTCTTCCTT 60.290 50.000 0.00 0.00 0.00 3.36
31 32 1.276421 CGTCACCCATGTCTTCTTCCT 59.724 52.381 0.00 0.00 0.00 3.36
32 33 1.676014 CCGTCACCCATGTCTTCTTCC 60.676 57.143 0.00 0.00 0.00 3.46
33 34 1.002087 ACCGTCACCCATGTCTTCTTC 59.998 52.381 0.00 0.00 0.00 2.87
34 35 1.056660 ACCGTCACCCATGTCTTCTT 58.943 50.000 0.00 0.00 0.00 2.52
35 36 0.321671 CACCGTCACCCATGTCTTCT 59.678 55.000 0.00 0.00 0.00 2.85
36 37 0.320374 TCACCGTCACCCATGTCTTC 59.680 55.000 0.00 0.00 0.00 2.87
37 38 0.984230 ATCACCGTCACCCATGTCTT 59.016 50.000 0.00 0.00 0.00 3.01
38 39 0.984230 AATCACCGTCACCCATGTCT 59.016 50.000 0.00 0.00 0.00 3.41
39 40 1.468520 CAAATCACCGTCACCCATGTC 59.531 52.381 0.00 0.00 0.00 3.06
40 41 1.533625 CAAATCACCGTCACCCATGT 58.466 50.000 0.00 0.00 0.00 3.21
41 42 0.171007 GCAAATCACCGTCACCCATG 59.829 55.000 0.00 0.00 0.00 3.66
42 43 1.305219 CGCAAATCACCGTCACCCAT 61.305 55.000 0.00 0.00 0.00 4.00
43 44 1.963855 CGCAAATCACCGTCACCCA 60.964 57.895 0.00 0.00 0.00 4.51
44 45 2.686816 CCGCAAATCACCGTCACCC 61.687 63.158 0.00 0.00 0.00 4.61
45 46 1.964373 ACCGCAAATCACCGTCACC 60.964 57.895 0.00 0.00 0.00 4.02
46 47 1.206578 CACCGCAAATCACCGTCAC 59.793 57.895 0.00 0.00 0.00 3.67
47 48 1.069935 TCACCGCAAATCACCGTCA 59.930 52.632 0.00 0.00 0.00 4.35
48 49 1.495951 GTCACCGCAAATCACCGTC 59.504 57.895 0.00 0.00 0.00 4.79
49 50 1.964373 GGTCACCGCAAATCACCGT 60.964 57.895 0.00 0.00 0.00 4.83
50 51 2.686816 GGGTCACCGCAAATCACCG 61.687 63.158 0.00 0.00 0.00 4.94
51 52 1.175983 TTGGGTCACCGCAAATCACC 61.176 55.000 0.00 0.00 40.18 4.02
52 53 0.671251 TTTGGGTCACCGCAAATCAC 59.329 50.000 6.42 0.00 45.31 3.06
53 54 3.117657 TTTGGGTCACCGCAAATCA 57.882 47.368 6.42 0.00 45.31 2.57
57 58 1.698506 ATTTCTTTGGGTCACCGCAA 58.301 45.000 0.00 0.00 41.25 4.85
58 59 1.611491 GAATTTCTTTGGGTCACCGCA 59.389 47.619 0.00 0.00 40.75 5.69
59 60 1.611491 TGAATTTCTTTGGGTCACCGC 59.389 47.619 0.00 0.00 40.75 5.68
60 61 4.519540 AATGAATTTCTTTGGGTCACCG 57.480 40.909 0.00 0.00 40.75 4.94
61 62 5.700832 GGAAAATGAATTTCTTTGGGTCACC 59.299 40.000 0.00 0.00 45.57 4.02
62 63 6.287525 TGGAAAATGAATTTCTTTGGGTCAC 58.712 36.000 0.00 0.00 45.57 3.67
63 64 6.464180 CCTGGAAAATGAATTTCTTTGGGTCA 60.464 38.462 0.00 0.00 45.57 4.02
64 65 5.934043 CCTGGAAAATGAATTTCTTTGGGTC 59.066 40.000 0.00 0.00 45.57 4.46
65 66 5.606329 TCCTGGAAAATGAATTTCTTTGGGT 59.394 36.000 0.00 0.00 45.57 4.51
66 67 6.112927 TCCTGGAAAATGAATTTCTTTGGG 57.887 37.500 0.00 0.00 45.57 4.12
67 68 7.662669 ACATTCCTGGAAAATGAATTTCTTTGG 59.337 33.333 14.03 0.00 45.57 3.28
68 69 8.611654 ACATTCCTGGAAAATGAATTTCTTTG 57.388 30.769 14.03 4.86 45.57 2.77
72 73 9.468532 GCTATACATTCCTGGAAAATGAATTTC 57.531 33.333 14.03 0.00 45.55 2.17
73 74 9.205513 AGCTATACATTCCTGGAAAATGAATTT 57.794 29.630 14.03 0.00 37.51 1.82
74 75 8.636213 CAGCTATACATTCCTGGAAAATGAATT 58.364 33.333 14.03 2.20 37.51 2.17
75 76 8.000709 TCAGCTATACATTCCTGGAAAATGAAT 58.999 33.333 14.03 5.90 37.51 2.57
76 77 7.345691 TCAGCTATACATTCCTGGAAAATGAA 58.654 34.615 14.03 0.00 37.51 2.57
77 78 6.899089 TCAGCTATACATTCCTGGAAAATGA 58.101 36.000 14.03 6.26 37.51 2.57
78 79 6.293845 GCTCAGCTATACATTCCTGGAAAATG 60.294 42.308 14.03 10.70 39.50 2.32
79 80 5.767168 GCTCAGCTATACATTCCTGGAAAAT 59.233 40.000 14.03 9.89 0.00 1.82
80 81 5.126067 GCTCAGCTATACATTCCTGGAAAA 58.874 41.667 14.03 2.61 0.00 2.29
81 82 4.708177 GCTCAGCTATACATTCCTGGAAA 58.292 43.478 14.03 0.00 0.00 3.13
82 83 3.243873 CGCTCAGCTATACATTCCTGGAA 60.244 47.826 12.26 12.26 0.00 3.53
83 84 2.297315 CGCTCAGCTATACATTCCTGGA 59.703 50.000 0.00 0.00 0.00 3.86
84 85 2.297315 TCGCTCAGCTATACATTCCTGG 59.703 50.000 0.00 0.00 0.00 4.45
85 86 3.573598 CTCGCTCAGCTATACATTCCTG 58.426 50.000 0.00 0.00 0.00 3.86
86 87 2.560542 CCTCGCTCAGCTATACATTCCT 59.439 50.000 0.00 0.00 0.00 3.36
87 88 2.297597 ACCTCGCTCAGCTATACATTCC 59.702 50.000 0.00 0.00 0.00 3.01
88 89 3.004839 TCACCTCGCTCAGCTATACATTC 59.995 47.826 0.00 0.00 0.00 2.67
89 90 2.959030 TCACCTCGCTCAGCTATACATT 59.041 45.455 0.00 0.00 0.00 2.71
90 91 2.587522 TCACCTCGCTCAGCTATACAT 58.412 47.619 0.00 0.00 0.00 2.29
91 92 2.052782 TCACCTCGCTCAGCTATACA 57.947 50.000 0.00 0.00 0.00 2.29
92 93 3.117046 GTTTCACCTCGCTCAGCTATAC 58.883 50.000 0.00 0.00 0.00 1.47
93 94 3.024547 AGTTTCACCTCGCTCAGCTATA 58.975 45.455 0.00 0.00 0.00 1.31
94 95 1.827969 AGTTTCACCTCGCTCAGCTAT 59.172 47.619 0.00 0.00 0.00 2.97
95 96 1.202582 GAGTTTCACCTCGCTCAGCTA 59.797 52.381 0.00 0.00 0.00 3.32
96 97 0.037790 GAGTTTCACCTCGCTCAGCT 60.038 55.000 0.00 0.00 0.00 4.24
97 98 0.037790 AGAGTTTCACCTCGCTCAGC 60.038 55.000 0.00 0.00 36.56 4.26
98 99 2.064762 CAAGAGTTTCACCTCGCTCAG 58.935 52.381 0.00 0.00 36.56 3.35
99 100 1.270305 CCAAGAGTTTCACCTCGCTCA 60.270 52.381 0.00 0.00 36.56 4.26
100 101 1.000955 TCCAAGAGTTTCACCTCGCTC 59.999 52.381 0.00 0.00 36.56 5.03
101 102 1.048601 TCCAAGAGTTTCACCTCGCT 58.951 50.000 0.00 0.00 36.56 4.93
102 103 1.149148 GTCCAAGAGTTTCACCTCGC 58.851 55.000 0.00 0.00 36.56 5.03
103 104 2.526304 TGTCCAAGAGTTTCACCTCG 57.474 50.000 0.00 0.00 36.56 4.63
104 105 4.073293 TCTTGTCCAAGAGTTTCACCTC 57.927 45.455 5.64 0.00 42.06 3.85
115 116 4.217118 CCTCCTGTTGAAATCTTGTCCAAG 59.783 45.833 0.47 0.47 39.71 3.61
116 117 4.141274 TCCTCCTGTTGAAATCTTGTCCAA 60.141 41.667 0.00 0.00 0.00 3.53
117 118 3.394274 TCCTCCTGTTGAAATCTTGTCCA 59.606 43.478 0.00 0.00 0.00 4.02
118 119 3.753797 GTCCTCCTGTTGAAATCTTGTCC 59.246 47.826 0.00 0.00 0.00 4.02
119 120 3.433615 CGTCCTCCTGTTGAAATCTTGTC 59.566 47.826 0.00 0.00 0.00 3.18
120 121 3.071023 TCGTCCTCCTGTTGAAATCTTGT 59.929 43.478 0.00 0.00 0.00 3.16
121 122 3.664107 TCGTCCTCCTGTTGAAATCTTG 58.336 45.455 0.00 0.00 0.00 3.02
122 123 3.307059 CCTCGTCCTCCTGTTGAAATCTT 60.307 47.826 0.00 0.00 0.00 2.40
123 124 2.234908 CCTCGTCCTCCTGTTGAAATCT 59.765 50.000 0.00 0.00 0.00 2.40
124 125 2.622436 CCTCGTCCTCCTGTTGAAATC 58.378 52.381 0.00 0.00 0.00 2.17
125 126 1.339151 GCCTCGTCCTCCTGTTGAAAT 60.339 52.381 0.00 0.00 0.00 2.17
126 127 0.034896 GCCTCGTCCTCCTGTTGAAA 59.965 55.000 0.00 0.00 0.00 2.69
127 128 1.671742 GCCTCGTCCTCCTGTTGAA 59.328 57.895 0.00 0.00 0.00 2.69
128 129 2.636412 CGCCTCGTCCTCCTGTTGA 61.636 63.158 0.00 0.00 0.00 3.18
129 130 2.125912 CGCCTCGTCCTCCTGTTG 60.126 66.667 0.00 0.00 0.00 3.33
130 131 4.070552 GCGCCTCGTCCTCCTGTT 62.071 66.667 0.00 0.00 0.00 3.16
131 132 3.640257 TAGCGCCTCGTCCTCCTGT 62.640 63.158 2.29 0.00 0.00 4.00
132 133 2.829003 TAGCGCCTCGTCCTCCTG 60.829 66.667 2.29 0.00 0.00 3.86
133 134 2.517402 CTAGCGCCTCGTCCTCCT 60.517 66.667 2.29 0.00 0.00 3.69
134 135 4.273257 GCTAGCGCCTCGTCCTCC 62.273 72.222 2.29 0.00 0.00 4.30
157 158 4.742201 TGCTGCCGCTCTTCGTCC 62.742 66.667 0.70 0.00 36.97 4.79
158 159 3.482783 GTGCTGCCGCTCTTCGTC 61.483 66.667 0.70 0.00 36.97 4.20
161 162 2.437359 ATGGTGCTGCCGCTCTTC 60.437 61.111 0.70 0.00 41.21 2.87
162 163 2.437359 GATGGTGCTGCCGCTCTT 60.437 61.111 0.70 0.00 41.21 2.85
163 164 4.827087 CGATGGTGCTGCCGCTCT 62.827 66.667 0.70 0.00 41.21 4.09
168 169 3.896133 CATGCCGATGGTGCTGCC 61.896 66.667 0.00 0.00 37.90 4.85
169 170 2.409055 TTCATGCCGATGGTGCTGC 61.409 57.895 0.00 0.00 0.00 5.25
170 171 1.028330 AGTTCATGCCGATGGTGCTG 61.028 55.000 0.00 0.00 0.00 4.41
171 172 1.028330 CAGTTCATGCCGATGGTGCT 61.028 55.000 0.00 0.00 0.00 4.40
172 173 1.026182 TCAGTTCATGCCGATGGTGC 61.026 55.000 0.00 0.00 0.00 5.01
173 174 1.012086 CTCAGTTCATGCCGATGGTG 58.988 55.000 0.00 0.00 0.00 4.17
174 175 0.745845 GCTCAGTTCATGCCGATGGT 60.746 55.000 0.00 0.00 0.00 3.55
175 176 1.769098 CGCTCAGTTCATGCCGATGG 61.769 60.000 0.00 0.00 0.00 3.51
176 177 1.086067 ACGCTCAGTTCATGCCGATG 61.086 55.000 0.00 0.00 0.00 3.84
177 178 0.807667 GACGCTCAGTTCATGCCGAT 60.808 55.000 0.00 0.00 0.00 4.18
178 179 1.446099 GACGCTCAGTTCATGCCGA 60.446 57.895 0.00 0.00 0.00 5.54
179 180 2.792290 CGACGCTCAGTTCATGCCG 61.792 63.158 0.00 0.00 0.00 5.69
180 181 2.456119 CCGACGCTCAGTTCATGCC 61.456 63.158 0.00 0.00 0.00 4.40
181 182 3.084579 CCGACGCTCAGTTCATGC 58.915 61.111 0.00 0.00 0.00 4.06
182 183 1.446792 AGCCGACGCTCAGTTCATG 60.447 57.895 0.00 0.00 43.95 3.07
183 184 1.446792 CAGCCGACGCTCAGTTCAT 60.447 57.895 0.00 0.00 43.95 2.57
184 185 2.049156 CAGCCGACGCTCAGTTCA 60.049 61.111 0.00 0.00 43.95 3.18
185 186 3.482783 GCAGCCGACGCTCAGTTC 61.483 66.667 0.00 0.00 43.95 3.01
199 200 1.739562 GGTCAGGTGAAGAGCGCAG 60.740 63.158 11.47 0.00 0.00 5.18
200 201 1.830587 ATGGTCAGGTGAAGAGCGCA 61.831 55.000 11.47 0.00 36.34 6.09
201 202 0.175760 TATGGTCAGGTGAAGAGCGC 59.824 55.000 0.00 0.00 36.34 5.92
202 203 1.202463 CCTATGGTCAGGTGAAGAGCG 60.202 57.143 0.00 0.00 36.34 5.03
203 204 1.139853 CCCTATGGTCAGGTGAAGAGC 59.860 57.143 0.00 0.00 33.44 4.09
204 205 1.139853 GCCCTATGGTCAGGTGAAGAG 59.860 57.143 0.00 0.00 33.44 2.85
205 206 1.204146 GCCCTATGGTCAGGTGAAGA 58.796 55.000 0.00 0.00 33.44 2.87
206 207 0.181350 GGCCCTATGGTCAGGTGAAG 59.819 60.000 0.00 0.00 35.79 3.02
207 208 1.279025 GGGCCCTATGGTCAGGTGAA 61.279 60.000 17.04 0.00 38.32 3.18
208 209 1.692749 GGGCCCTATGGTCAGGTGA 60.693 63.158 17.04 0.00 38.32 4.02
209 210 2.757124 GGGGCCCTATGGTCAGGTG 61.757 68.421 24.38 0.00 38.32 4.00
210 211 2.368329 GGGGCCCTATGGTCAGGT 60.368 66.667 24.38 0.00 38.32 4.00
211 212 3.560251 CGGGGCCCTATGGTCAGG 61.560 72.222 24.38 0.00 38.32 3.86
212 213 2.375345 AACGGGGCCCTATGGTCAG 61.375 63.158 24.38 4.44 38.32 3.51
213 214 2.285818 AACGGGGCCCTATGGTCA 60.286 61.111 24.38 0.00 38.32 4.02
214 215 2.192175 CAACGGGGCCCTATGGTC 59.808 66.667 24.38 1.81 34.57 4.02
215 216 3.416880 CCAACGGGGCCCTATGGT 61.417 66.667 27.04 14.06 0.00 3.55
216 217 3.415650 GACCAACGGGGCCCTATGG 62.416 68.421 31.16 31.16 42.05 2.74
217 218 2.192175 GACCAACGGGGCCCTATG 59.808 66.667 24.38 18.54 42.05 2.23
218 219 1.926489 TTGACCAACGGGGCCCTAT 60.926 57.895 24.38 7.21 44.10 2.57
219 220 2.529643 TTGACCAACGGGGCCCTA 60.530 61.111 24.38 0.00 44.10 3.53
220 221 4.280019 GTTGACCAACGGGGCCCT 62.280 66.667 24.38 4.65 44.10 5.19
221 222 4.589675 TGTTGACCAACGGGGCCC 62.590 66.667 15.76 15.76 44.10 5.80
222 223 2.128507 TTTGTTGACCAACGGGGCC 61.129 57.895 0.00 0.00 44.10 5.80
223 224 1.066752 GTTTGTTGACCAACGGGGC 59.933 57.895 8.18 0.00 45.44 5.80
224 225 1.038130 TGGTTTGTTGACCAACGGGG 61.038 55.000 8.18 0.00 46.33 5.73
225 226 2.494677 TGGTTTGTTGACCAACGGG 58.505 52.632 8.18 0.00 46.33 5.28
230 231 3.157881 TGTCAAAGTGGTTTGTTGACCA 58.842 40.909 11.94 0.00 46.85 4.02
231 232 3.859411 TGTCAAAGTGGTTTGTTGACC 57.141 42.857 11.94 0.00 46.85 4.02
233 234 5.398603 ACATTGTCAAAGTGGTTTGTTGA 57.601 34.783 0.00 0.00 43.22 3.18
234 235 4.566360 GGACATTGTCAAAGTGGTTTGTTG 59.434 41.667 18.09 0.00 43.22 3.33
235 236 4.221703 TGGACATTGTCAAAGTGGTTTGTT 59.778 37.500 18.09 0.00 43.22 2.83
236 237 3.766591 TGGACATTGTCAAAGTGGTTTGT 59.233 39.130 18.09 0.00 43.22 2.83
237 238 4.111916 GTGGACATTGTCAAAGTGGTTTG 58.888 43.478 18.09 0.00 43.96 2.93
238 239 3.766591 TGTGGACATTGTCAAAGTGGTTT 59.233 39.130 18.09 0.00 33.68 3.27
239 240 3.360867 TGTGGACATTGTCAAAGTGGTT 58.639 40.909 18.09 0.00 33.68 3.67
240 241 3.011566 TGTGGACATTGTCAAAGTGGT 57.988 42.857 18.09 0.00 33.68 4.16
241 242 3.569277 TGATGTGGACATTGTCAAAGTGG 59.431 43.478 18.09 0.00 36.57 4.00
242 243 4.790878 CTGATGTGGACATTGTCAAAGTG 58.209 43.478 18.09 0.00 36.57 3.16
243 244 3.254166 GCTGATGTGGACATTGTCAAAGT 59.746 43.478 18.09 0.00 36.57 2.66
244 245 3.253921 TGCTGATGTGGACATTGTCAAAG 59.746 43.478 18.09 3.03 36.57 2.77
245 246 3.220940 TGCTGATGTGGACATTGTCAAA 58.779 40.909 18.09 3.43 36.57 2.69
246 247 2.861274 TGCTGATGTGGACATTGTCAA 58.139 42.857 18.09 4.29 36.57 3.18
247 248 2.565046 TGCTGATGTGGACATTGTCA 57.435 45.000 18.09 0.00 36.57 3.58
248 249 3.568538 GTTTGCTGATGTGGACATTGTC 58.431 45.455 8.34 8.34 36.57 3.18
249 250 2.297033 GGTTTGCTGATGTGGACATTGT 59.703 45.455 0.00 0.00 36.57 2.71
250 251 2.296752 TGGTTTGCTGATGTGGACATTG 59.703 45.455 0.00 0.00 36.57 2.82
251 252 2.297033 GTGGTTTGCTGATGTGGACATT 59.703 45.455 0.00 0.00 36.57 2.71
252 253 1.888512 GTGGTTTGCTGATGTGGACAT 59.111 47.619 0.00 0.00 39.70 3.06
253 254 1.317613 GTGGTTTGCTGATGTGGACA 58.682 50.000 0.00 0.00 0.00 4.02
254 255 0.598065 GGTGGTTTGCTGATGTGGAC 59.402 55.000 0.00 0.00 0.00 4.02
255 256 0.478072 AGGTGGTTTGCTGATGTGGA 59.522 50.000 0.00 0.00 0.00 4.02
256 257 0.599558 CAGGTGGTTTGCTGATGTGG 59.400 55.000 0.00 0.00 0.00 4.17
257 258 1.608055 TCAGGTGGTTTGCTGATGTG 58.392 50.000 0.00 0.00 0.00 3.21
258 259 2.592102 ATCAGGTGGTTTGCTGATGT 57.408 45.000 0.00 0.00 35.51 3.06
259 260 5.389859 TTTTATCAGGTGGTTTGCTGATG 57.610 39.130 0.00 0.00 37.18 3.07
260 261 5.127682 GGATTTTATCAGGTGGTTTGCTGAT 59.872 40.000 0.00 0.00 39.52 2.90
261 262 4.462483 GGATTTTATCAGGTGGTTTGCTGA 59.538 41.667 0.00 0.00 0.00 4.26
262 263 4.675146 CGGATTTTATCAGGTGGTTTGCTG 60.675 45.833 0.00 0.00 0.00 4.41
263 264 3.443681 CGGATTTTATCAGGTGGTTTGCT 59.556 43.478 0.00 0.00 0.00 3.91
264 265 3.192633 ACGGATTTTATCAGGTGGTTTGC 59.807 43.478 0.00 0.00 0.00 3.68
265 266 4.142469 GGACGGATTTTATCAGGTGGTTTG 60.142 45.833 0.00 0.00 0.00 2.93
266 267 4.014406 GGACGGATTTTATCAGGTGGTTT 58.986 43.478 0.00 0.00 0.00 3.27
267 268 3.009695 TGGACGGATTTTATCAGGTGGTT 59.990 43.478 0.00 0.00 0.00 3.67
268 269 2.574369 TGGACGGATTTTATCAGGTGGT 59.426 45.455 0.00 0.00 0.00 4.16
269 270 3.275617 TGGACGGATTTTATCAGGTGG 57.724 47.619 0.00 0.00 0.00 4.61
270 271 4.332819 GTCTTGGACGGATTTTATCAGGTG 59.667 45.833 0.00 0.00 0.00 4.00
271 272 4.225267 AGTCTTGGACGGATTTTATCAGGT 59.775 41.667 0.00 0.00 37.67 4.00
272 273 4.770795 AGTCTTGGACGGATTTTATCAGG 58.229 43.478 0.00 0.00 37.67 3.86
273 274 8.438676 AAATAGTCTTGGACGGATTTTATCAG 57.561 34.615 0.00 0.00 37.67 2.90
274 275 8.265055 AGAAATAGTCTTGGACGGATTTTATCA 58.735 33.333 11.72 0.00 35.10 2.15
275 276 8.552034 CAGAAATAGTCTTGGACGGATTTTATC 58.448 37.037 11.72 0.00 35.10 1.75
276 277 8.265055 TCAGAAATAGTCTTGGACGGATTTTAT 58.735 33.333 11.72 5.38 35.10 1.40
277 278 7.617225 TCAGAAATAGTCTTGGACGGATTTTA 58.383 34.615 11.72 3.58 35.10 1.52
278 279 6.472887 TCAGAAATAGTCTTGGACGGATTTT 58.527 36.000 11.72 3.95 35.10 1.82
279 280 6.049955 TCAGAAATAGTCTTGGACGGATTT 57.950 37.500 10.84 10.84 36.47 2.17
280 281 5.677319 TCAGAAATAGTCTTGGACGGATT 57.323 39.130 0.00 0.00 37.67 3.01
281 282 5.046591 TGTTCAGAAATAGTCTTGGACGGAT 60.047 40.000 0.00 0.00 37.67 4.18
282 283 4.282449 TGTTCAGAAATAGTCTTGGACGGA 59.718 41.667 0.00 0.00 37.67 4.69
283 284 4.566004 TGTTCAGAAATAGTCTTGGACGG 58.434 43.478 0.00 0.00 37.67 4.79
284 285 5.230942 ACTGTTCAGAAATAGTCTTGGACG 58.769 41.667 6.83 0.00 37.67 4.79
285 286 8.660373 CAATACTGTTCAGAAATAGTCTTGGAC 58.340 37.037 6.83 0.00 37.20 4.02
286 287 8.777865 CAATACTGTTCAGAAATAGTCTTGGA 57.222 34.615 6.83 0.00 37.20 3.53
287 288 7.978982 CCAATACTGTTCAGAAATAGTCTTGG 58.021 38.462 20.27 20.27 45.50 3.61
288 289 8.777865 TCCAATACTGTTCAGAAATAGTCTTG 57.222 34.615 6.83 14.19 38.90 3.02
295 296 9.775854 CTGATCTATCCAATACTGTTCAGAAAT 57.224 33.333 6.83 0.00 31.90 2.17
296 297 8.206867 CCTGATCTATCCAATACTGTTCAGAAA 58.793 37.037 6.83 0.00 31.90 2.52
297 298 7.202038 CCCTGATCTATCCAATACTGTTCAGAA 60.202 40.741 6.83 0.00 31.90 3.02
298 299 6.268617 CCCTGATCTATCCAATACTGTTCAGA 59.731 42.308 6.83 0.00 31.90 3.27
299 300 6.462500 CCCTGATCTATCCAATACTGTTCAG 58.538 44.000 0.00 0.00 0.00 3.02
300 301 5.307976 CCCCTGATCTATCCAATACTGTTCA 59.692 44.000 0.00 0.00 0.00 3.18
301 302 5.280215 CCCCCTGATCTATCCAATACTGTTC 60.280 48.000 0.00 0.00 0.00 3.18
302 303 4.599241 CCCCCTGATCTATCCAATACTGTT 59.401 45.833 0.00 0.00 0.00 3.16
303 304 4.171234 CCCCCTGATCTATCCAATACTGT 58.829 47.826 0.00 0.00 0.00 3.55
304 305 4.171234 ACCCCCTGATCTATCCAATACTG 58.829 47.826 0.00 0.00 0.00 2.74
305 306 4.510303 ACCCCCTGATCTATCCAATACT 57.490 45.455 0.00 0.00 0.00 2.12
306 307 6.272558 ACTTAACCCCCTGATCTATCCAATAC 59.727 42.308 0.00 0.00 0.00 1.89
307 308 6.272324 CACTTAACCCCCTGATCTATCCAATA 59.728 42.308 0.00 0.00 0.00 1.90
308 309 5.073691 CACTTAACCCCCTGATCTATCCAAT 59.926 44.000 0.00 0.00 0.00 3.16
309 310 4.412199 CACTTAACCCCCTGATCTATCCAA 59.588 45.833 0.00 0.00 0.00 3.53
310 311 3.973973 CACTTAACCCCCTGATCTATCCA 59.026 47.826 0.00 0.00 0.00 3.41
311 312 4.232091 TCACTTAACCCCCTGATCTATCC 58.768 47.826 0.00 0.00 0.00 2.59
312 313 5.612351 GTTCACTTAACCCCCTGATCTATC 58.388 45.833 0.00 0.00 31.38 2.08
313 314 5.632034 GTTCACTTAACCCCCTGATCTAT 57.368 43.478 0.00 0.00 31.38 1.98
340 341 5.221541 TGTTCGCATAACCCCTTGAATTTTT 60.222 36.000 0.00 0.00 0.00 1.94
341 342 4.282195 TGTTCGCATAACCCCTTGAATTTT 59.718 37.500 0.00 0.00 0.00 1.82
342 343 3.829601 TGTTCGCATAACCCCTTGAATTT 59.170 39.130 0.00 0.00 0.00 1.82
343 344 3.426615 TGTTCGCATAACCCCTTGAATT 58.573 40.909 0.00 0.00 0.00 2.17
344 345 3.080300 TGTTCGCATAACCCCTTGAAT 57.920 42.857 0.00 0.00 0.00 2.57
345 346 2.554893 GTTGTTCGCATAACCCCTTGAA 59.445 45.455 0.00 0.00 0.00 2.69
346 347 2.156098 GTTGTTCGCATAACCCCTTGA 58.844 47.619 0.00 0.00 0.00 3.02
347 348 1.201414 GGTTGTTCGCATAACCCCTTG 59.799 52.381 2.31 0.00 40.31 3.61
348 349 1.541379 GGTTGTTCGCATAACCCCTT 58.459 50.000 2.31 0.00 40.31 3.95
349 350 3.259592 GGTTGTTCGCATAACCCCT 57.740 52.632 2.31 0.00 40.31 4.79
352 353 3.586100 AAATGGGTTGTTCGCATAACC 57.414 42.857 5.17 5.17 46.57 2.85
353 354 6.809196 TGAATAAAATGGGTTGTTCGCATAAC 59.191 34.615 0.00 0.00 46.57 1.89
354 355 6.925211 TGAATAAAATGGGTTGTTCGCATAA 58.075 32.000 0.00 0.00 46.57 1.90
355 356 6.405286 CCTGAATAAAATGGGTTGTTCGCATA 60.405 38.462 0.00 0.00 46.57 3.14
357 358 4.321601 CCTGAATAAAATGGGTTGTTCGCA 60.322 41.667 0.00 0.00 42.92 5.10
358 359 4.173256 CCTGAATAAAATGGGTTGTTCGC 58.827 43.478 0.00 0.00 32.86 4.70
359 360 4.461081 TCCCTGAATAAAATGGGTTGTTCG 59.539 41.667 0.00 0.00 40.48 3.95
360 361 5.993748 TCCCTGAATAAAATGGGTTGTTC 57.006 39.130 0.00 0.00 40.48 3.18
361 362 5.843969 ACTTCCCTGAATAAAATGGGTTGTT 59.156 36.000 0.00 0.00 40.48 2.83
362 363 5.402630 ACTTCCCTGAATAAAATGGGTTGT 58.597 37.500 0.00 0.00 40.48 3.32
363 364 7.475137 TTACTTCCCTGAATAAAATGGGTTG 57.525 36.000 0.00 0.00 40.48 3.77
364 365 8.499288 TTTTACTTCCCTGAATAAAATGGGTT 57.501 30.769 0.00 0.00 40.48 4.11
365 366 8.679344 ATTTTACTTCCCTGAATAAAATGGGT 57.321 30.769 0.00 0.00 40.48 4.51
398 399 9.801873 CAGGTGAAAACTGAAAAAGAATAGAAA 57.198 29.630 0.00 0.00 38.20 2.52
399 400 9.184523 TCAGGTGAAAACTGAAAAAGAATAGAA 57.815 29.630 0.00 0.00 41.66 2.10
400 401 8.621286 GTCAGGTGAAAACTGAAAAAGAATAGA 58.379 33.333 0.00 0.00 45.66 1.98
401 402 7.862873 GGTCAGGTGAAAACTGAAAAAGAATAG 59.137 37.037 0.00 0.00 45.66 1.73
402 403 7.340743 TGGTCAGGTGAAAACTGAAAAAGAATA 59.659 33.333 0.00 0.00 45.66 1.75
403 404 6.154363 TGGTCAGGTGAAAACTGAAAAAGAAT 59.846 34.615 0.00 0.00 45.66 2.40
404 405 5.478679 TGGTCAGGTGAAAACTGAAAAAGAA 59.521 36.000 0.00 0.00 45.66 2.52
405 406 5.013547 TGGTCAGGTGAAAACTGAAAAAGA 58.986 37.500 0.00 0.00 45.66 2.52
406 407 5.323371 TGGTCAGGTGAAAACTGAAAAAG 57.677 39.130 0.00 0.00 45.66 2.27
541 542 8.866956 CAAATTCAGAATTAGATGCACTTTTCC 58.133 33.333 8.88 0.00 0.00 3.13
573 575 0.383737 GTGCGCGTCGTGAAAATTGA 60.384 50.000 10.58 0.00 0.00 2.57
668 671 3.549625 CGTACGGTACAATCTCCCTTAGC 60.550 52.174 17.69 0.00 0.00 3.09
669 672 3.004106 CCGTACGGTACAATCTCCCTTAG 59.996 52.174 26.39 0.00 0.00 2.18
670 673 2.951642 CCGTACGGTACAATCTCCCTTA 59.048 50.000 26.39 0.00 0.00 2.69
671 674 1.753073 CCGTACGGTACAATCTCCCTT 59.247 52.381 26.39 0.00 0.00 3.95
672 675 1.396653 CCGTACGGTACAATCTCCCT 58.603 55.000 26.39 0.00 0.00 4.20
680 683 0.173935 CCATTGAGCCGTACGGTACA 59.826 55.000 33.34 27.93 37.65 2.90
700 709 1.128507 CCGTTCATGTCACATCGTTGG 59.871 52.381 0.00 0.00 0.00 3.77
825 846 1.016653 GCGAGCGAGAAGGAAAAGCT 61.017 55.000 0.00 0.00 41.29 3.74
829 850 1.215647 GGAGCGAGCGAGAAGGAAA 59.784 57.895 0.00 0.00 0.00 3.13
833 854 1.803519 GTGTGGAGCGAGCGAGAAG 60.804 63.158 0.00 0.00 0.00 2.85
834 855 2.258591 GTGTGGAGCGAGCGAGAA 59.741 61.111 0.00 0.00 0.00 2.87
835 856 4.103103 CGTGTGGAGCGAGCGAGA 62.103 66.667 0.00 0.00 0.00 4.04
895 919 4.460948 TTCTATTTCTACCACACGTCCC 57.539 45.455 0.00 0.00 0.00 4.46
901 925 7.390440 CCTGTGACAAATTCTATTTCTACCACA 59.610 37.037 0.00 0.00 0.00 4.17
903 927 6.374333 GCCTGTGACAAATTCTATTTCTACCA 59.626 38.462 0.00 0.00 0.00 3.25
911 935 3.350219 ACGGCCTGTGACAAATTCTAT 57.650 42.857 0.00 0.00 0.00 1.98
913 937 2.301870 TCTACGGCCTGTGACAAATTCT 59.698 45.455 0.00 0.00 0.00 2.40
915 939 2.851263 TCTACGGCCTGTGACAAATT 57.149 45.000 0.00 0.00 0.00 1.82
916 940 3.350219 AATCTACGGCCTGTGACAAAT 57.650 42.857 0.00 0.00 0.00 2.32
917 941 2.851263 AATCTACGGCCTGTGACAAA 57.149 45.000 0.00 0.00 0.00 2.83
918 942 4.188462 CAATAATCTACGGCCTGTGACAA 58.812 43.478 0.00 0.00 0.00 3.18
919 943 3.792401 CAATAATCTACGGCCTGTGACA 58.208 45.455 0.00 0.00 0.00 3.58
920 944 2.544267 GCAATAATCTACGGCCTGTGAC 59.456 50.000 0.00 0.00 0.00 3.67
921 945 2.434336 AGCAATAATCTACGGCCTGTGA 59.566 45.455 0.00 2.18 0.00 3.58
922 946 2.838736 AGCAATAATCTACGGCCTGTG 58.161 47.619 0.00 0.00 0.00 3.66
923 947 3.560636 AAGCAATAATCTACGGCCTGT 57.439 42.857 0.00 2.95 0.00 4.00
924 948 3.059597 CGAAAGCAATAATCTACGGCCTG 60.060 47.826 0.00 0.00 0.00 4.85
925 949 3.131396 CGAAAGCAATAATCTACGGCCT 58.869 45.455 0.00 0.00 0.00 5.19
926 950 3.128349 TCGAAAGCAATAATCTACGGCC 58.872 45.455 0.00 0.00 0.00 6.13
1169 1208 1.227853 GAAACCACGCCCTCTGTGT 60.228 57.895 0.00 0.00 38.53 3.72
1170 1209 0.606401 ATGAAACCACGCCCTCTGTG 60.606 55.000 0.00 0.00 37.09 3.66
1171 1210 0.321653 GATGAAACCACGCCCTCTGT 60.322 55.000 0.00 0.00 0.00 3.41
1172 1211 0.321564 TGATGAAACCACGCCCTCTG 60.322 55.000 0.00 0.00 0.00 3.35
1173 1212 0.036010 CTGATGAAACCACGCCCTCT 60.036 55.000 0.00 0.00 0.00 3.69
1175 1214 1.675641 GCTGATGAAACCACGCCCT 60.676 57.895 0.00 0.00 0.00 5.19
1212 1258 3.503827 GCATGATATGGATGCATGTGG 57.496 47.619 10.37 0.00 44.74 4.17
1399 1448 4.948341 TCATACCCTGCAACATATACGT 57.052 40.909 0.00 0.00 0.00 3.57
1400 1449 4.631377 CCATCATACCCTGCAACATATACG 59.369 45.833 0.00 0.00 0.00 3.06
1413 1462 4.546829 TTACGAATAGGCCATCATACCC 57.453 45.455 5.01 0.00 0.00 3.69
1555 1612 6.182204 GGGTGTACCGAAACAAAGTTTGTTC 61.182 44.000 29.13 21.24 44.38 3.18
1655 1733 6.500684 TGACTTGGATGCAAAAGACTATTC 57.499 37.500 12.54 2.45 0.00 1.75
1681 1759 9.177608 AGCTTGCAGATCAAACATACTAAATAA 57.822 29.630 0.00 0.00 33.65 1.40
1691 1769 5.887598 ACCATATTAGCTTGCAGATCAAACA 59.112 36.000 0.00 0.00 33.65 2.83
1715 1793 9.974980 CCTTAAAGTTGTTTAAAAAGGCTATCA 57.025 29.630 0.00 0.00 37.61 2.15
1771 1850 6.989437 TCGATATAGTTTGAGTTTTGCTTCG 58.011 36.000 0.00 0.00 0.00 3.79
1913 2078 6.380995 TGAATTACTAGCATGCTTGTGTTTG 58.619 36.000 35.09 16.39 34.25 2.93
1928 2095 9.899661 ATGCAATACTTGGTTACTGAATTACTA 57.100 29.630 0.00 0.00 0.00 1.82
1929 2096 8.807948 ATGCAATACTTGGTTACTGAATTACT 57.192 30.769 0.00 0.00 0.00 2.24
1930 2097 8.673711 TGATGCAATACTTGGTTACTGAATTAC 58.326 33.333 0.00 0.00 0.00 1.89
1971 2141 6.536941 GTCTCAGTCTTTCTTCTTGTTCTTGT 59.463 38.462 0.00 0.00 0.00 3.16
1975 2145 6.276847 TCTGTCTCAGTCTTTCTTCTTGTTC 58.723 40.000 0.00 0.00 32.61 3.18
1990 2160 0.252479 AAGCCAGCCATCTGTCTCAG 59.748 55.000 0.00 0.00 38.66 3.35
2003 2173 3.119708 GCAAGTGAGTTCCATAAAGCCAG 60.120 47.826 0.00 0.00 0.00 4.85
2032 2204 2.507110 TAAGCTGTCGTGGCCAGAGC 62.507 60.000 5.11 11.96 38.76 4.09
2053 2225 7.538575 GCTGAATTTGAAGTTATTTAGAGCCA 58.461 34.615 0.00 0.00 0.00 4.75
2057 2229 7.094805 ACAGCGCTGAATTTGAAGTTATTTAGA 60.095 33.333 42.03 0.00 0.00 2.10
2416 4062 1.464608 CTTGATGTGTACGGGCAACAG 59.535 52.381 0.00 0.00 39.74 3.16
2451 4097 1.869767 GAGGAATCGCTACCATGCTTG 59.130 52.381 0.00 0.00 0.00 4.01
2565 4240 6.127196 GGCATGAACCTATATTTGTTTCCCAA 60.127 38.462 0.00 0.00 0.00 4.12
2740 4416 2.930950 AGCAACTCAAGTAAACTGCCA 58.069 42.857 1.88 0.00 30.61 4.92
2759 4435 6.150976 TGCATAGGAGTATGAAACACCAAAAG 59.849 38.462 0.00 0.00 41.03 2.27
2764 4440 7.801716 TTATTGCATAGGAGTATGAAACACC 57.198 36.000 0.00 0.00 37.06 4.16
2774 4450 5.765510 TGTCCCAAATTATTGCATAGGAGT 58.234 37.500 0.00 0.00 35.10 3.85
2775 4451 6.713762 TTGTCCCAAATTATTGCATAGGAG 57.286 37.500 0.00 0.00 35.10 3.69
2776 4452 8.774546 TTATTGTCCCAAATTATTGCATAGGA 57.225 30.769 0.00 0.00 35.10 2.94
2809 4485 1.468520 CGAAACGGTTTGATGCCATCT 59.531 47.619 11.43 0.00 0.00 2.90
2824 4500 4.909305 TGAAACAAAAGATGCGATCGAAAC 59.091 37.500 21.57 7.41 0.00 2.78
2832 4508 3.567530 TGCTCATGAAACAAAAGATGCG 58.432 40.909 0.00 0.00 0.00 4.73
2849 4525 3.186409 TCATTTTGCGTTACTGACTGCTC 59.814 43.478 0.00 0.00 0.00 4.26
2865 4541 0.951558 ACGCTTCCGCAGTTCATTTT 59.048 45.000 0.00 0.00 38.22 1.82
2889 4565 2.358898 AGTTCACACCAAACATGAGTGC 59.641 45.455 0.00 0.00 34.83 4.40
2904 4580 6.017109 ACAATCCTGAACACACATAAGTTCAC 60.017 38.462 4.07 0.00 46.46 3.18
2940 4620 3.000727 GCACGTAAAGCAGTATCCACTT 58.999 45.455 0.00 0.00 30.46 3.16
2954 4634 1.164411 CATCCTTGGCAAGCACGTAA 58.836 50.000 21.77 2.83 0.00 3.18
3045 4725 1.377333 CGTGGGCTTCCCTCCTTTC 60.377 63.158 3.27 0.00 45.70 2.62
3169 4860 8.603242 AGTACTTGTACAACTTTATTGTCTGG 57.397 34.615 3.59 0.00 34.11 3.86
3189 4880 6.650427 TCAACAATCACAGTACAGAGTACT 57.350 37.500 0.00 0.00 0.00 2.73
3190 4881 7.891183 ATTCAACAATCACAGTACAGAGTAC 57.109 36.000 0.00 0.00 0.00 2.73
3191 4882 8.367911 AGAATTCAACAATCACAGTACAGAGTA 58.632 33.333 8.44 0.00 0.00 2.59
3192 4883 7.220030 AGAATTCAACAATCACAGTACAGAGT 58.780 34.615 8.44 0.00 0.00 3.24
3193 4884 7.664082 AGAATTCAACAATCACAGTACAGAG 57.336 36.000 8.44 0.00 0.00 3.35
3201 4892 9.605275 CCTCTCTTATAGAATTCAACAATCACA 57.395 33.333 8.44 0.00 32.46 3.58
3202 4893 9.823647 TCCTCTCTTATAGAATTCAACAATCAC 57.176 33.333 8.44 0.00 32.46 3.06
3205 4896 9.319143 CGTTCCTCTCTTATAGAATTCAACAAT 57.681 33.333 8.44 0.00 32.46 2.71
3206 4897 8.528643 TCGTTCCTCTCTTATAGAATTCAACAA 58.471 33.333 8.44 0.00 32.46 2.83
3207 4898 8.063200 TCGTTCCTCTCTTATAGAATTCAACA 57.937 34.615 8.44 0.00 32.46 3.33
3210 4901 9.794719 TCTATCGTTCCTCTCTTATAGAATTCA 57.205 33.333 8.44 0.00 32.46 2.57
3214 4905 8.516234 GCAATCTATCGTTCCTCTCTTATAGAA 58.484 37.037 0.00 0.00 32.46 2.10
3215 4906 7.885922 AGCAATCTATCGTTCCTCTCTTATAGA 59.114 37.037 0.00 0.00 32.26 1.98
3216 4907 8.050778 AGCAATCTATCGTTCCTCTCTTATAG 57.949 38.462 0.00 0.00 0.00 1.31
3217 4908 8.410673 AAGCAATCTATCGTTCCTCTCTTATA 57.589 34.615 0.00 0.00 0.00 0.98
3218 4909 6.909550 AGCAATCTATCGTTCCTCTCTTAT 57.090 37.500 0.00 0.00 0.00 1.73
3219 4910 6.716934 AAGCAATCTATCGTTCCTCTCTTA 57.283 37.500 0.00 0.00 0.00 2.10
3220 4911 5.606348 AAGCAATCTATCGTTCCTCTCTT 57.394 39.130 0.00 0.00 0.00 2.85
3221 4912 5.355596 CAAAGCAATCTATCGTTCCTCTCT 58.644 41.667 0.00 0.00 0.00 3.10
3227 4918 4.084328 CCGATCCAAAGCAATCTATCGTTC 60.084 45.833 0.00 0.00 35.62 3.95
3230 4921 3.653344 TCCGATCCAAAGCAATCTATCG 58.347 45.455 0.00 0.00 36.78 2.92
3322 5016 4.388499 ATCACCGGCCACCGTCAC 62.388 66.667 0.00 0.00 46.80 3.67
3573 5277 7.125391 AGAATGTTAGGTTGATCTCTCTCTCT 58.875 38.462 0.00 0.00 0.00 3.10
3574 5278 7.346751 AGAATGTTAGGTTGATCTCTCTCTC 57.653 40.000 0.00 0.00 0.00 3.20
3575 5279 6.323739 GGAGAATGTTAGGTTGATCTCTCTCT 59.676 42.308 0.00 0.00 34.98 3.10
3576 5280 6.462347 GGGAGAATGTTAGGTTGATCTCTCTC 60.462 46.154 0.00 0.00 32.83 3.20
3693 5397 6.936900 AGCTGTATGATTCTAACGGCAATTAT 59.063 34.615 18.66 2.46 45.86 1.28
3748 5452 2.314549 TGGATAGGCCCAAAAGGAACAT 59.685 45.455 0.00 0.00 38.24 2.71
3786 5491 1.680989 GCCGGCATGGGTTTAAGGT 60.681 57.895 24.80 0.00 38.63 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.