Multiple sequence alignment - TraesCS2D01G363900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G363900 chr2D 100.000 3288 0 0 1 3288 469741525 469738238 0.000000e+00 6072.0
1 TraesCS2D01G363900 chr2D 91.089 303 23 3 2579 2878 40642053 40641752 1.100000e-109 407.0
2 TraesCS2D01G363900 chr2D 90.759 303 24 3 2579 2878 550913674 550913373 5.110000e-108 401.0
3 TraesCS2D01G363900 chr2A 93.194 955 45 9 836 1782 611107861 611106919 0.000000e+00 1386.0
4 TraesCS2D01G363900 chr2A 93.029 832 50 3 1 831 704737330 704736506 0.000000e+00 1208.0
5 TraesCS2D01G363900 chr2A 89.530 745 37 20 1780 2508 611106695 611105976 0.000000e+00 905.0
6 TraesCS2D01G363900 chr2A 90.584 308 25 3 2579 2883 382369781 382370087 3.950000e-109 405.0
7 TraesCS2D01G363900 chr2A 80.353 397 29 21 2912 3287 611105950 611105582 4.210000e-64 255.0
8 TraesCS2D01G363900 chr5A 93.397 833 46 5 4 835 619773883 619773059 0.000000e+00 1225.0
9 TraesCS2D01G363900 chr5A 92.455 835 54 5 1 834 643460539 643459713 0.000000e+00 1184.0
10 TraesCS2D01G363900 chr5A 90.759 303 24 3 2579 2878 221627351 221627652 5.110000e-108 401.0
11 TraesCS2D01G363900 chr3D 93.198 838 45 7 3 831 376917904 376918738 0.000000e+00 1221.0
12 TraesCS2D01G363900 chr3D 90.000 70 7 0 2517 2586 595508233 595508164 1.260000e-14 91.6
13 TraesCS2D01G363900 chr1D 93.087 839 49 6 1 835 139117297 139116464 0.000000e+00 1219.0
14 TraesCS2D01G363900 chr7D 93.447 824 38 7 8 830 39012305 39011497 0.000000e+00 1208.0
15 TraesCS2D01G363900 chr7B 92.372 839 49 9 3 839 424147763 424146938 0.000000e+00 1181.0
16 TraesCS2D01G363900 chr7B 90.461 304 22 6 2579 2878 655871960 655872260 8.550000e-106 394.0
17 TraesCS2D01G363900 chr6A 92.410 830 58 3 4 831 158240372 158241198 0.000000e+00 1179.0
18 TraesCS2D01G363900 chr5B 92.115 837 55 6 1 835 344242094 344241267 0.000000e+00 1170.0
19 TraesCS2D01G363900 chr2B 95.852 675 18 5 834 1507 548391146 548390481 0.000000e+00 1083.0
20 TraesCS2D01G363900 chr2B 89.740 692 43 13 1848 2525 548390391 548389714 0.000000e+00 859.0
21 TraesCS2D01G363900 chr2B 90.759 303 24 3 2579 2878 168774309 168774008 5.110000e-108 401.0
22 TraesCS2D01G363900 chr2B 83.650 263 24 11 2885 3144 548389001 548388755 2.550000e-56 230.0
23 TraesCS2D01G363900 chr2B 93.548 62 2 2 2515 2576 168632604 168632663 1.260000e-14 91.6
24 TraesCS2D01G363900 chr1A 91.391 302 23 2 2579 2878 126483581 126483881 8.490000e-111 411.0
25 TraesCS2D01G363900 chr6D 91.089 303 22 4 2579 2878 396473496 396473196 3.950000e-109 405.0
26 TraesCS2D01G363900 chr3B 90.728 302 23 4 2579 2878 712719896 712720194 6.610000e-107 398.0
27 TraesCS2D01G363900 chr3B 90.476 63 6 0 2524 2586 547651041 547650979 2.100000e-12 84.2
28 TraesCS2D01G363900 chr7A 85.408 233 31 3 2641 2872 98784360 98784130 4.240000e-59 239.0
29 TraesCS2D01G363900 chr5D 92.063 63 5 0 2524 2586 336973637 336973575 4.520000e-14 89.8
30 TraesCS2D01G363900 chr1B 90.476 63 6 0 2524 2586 342595635 342595697 2.100000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G363900 chr2D 469738238 469741525 3287 True 6072.000000 6072 100.000000 1 3288 1 chr2D.!!$R2 3287
1 TraesCS2D01G363900 chr2A 704736506 704737330 824 True 1208.000000 1208 93.029000 1 831 1 chr2A.!!$R1 830
2 TraesCS2D01G363900 chr2A 611105582 611107861 2279 True 848.666667 1386 87.692333 836 3287 3 chr2A.!!$R2 2451
3 TraesCS2D01G363900 chr5A 619773059 619773883 824 True 1225.000000 1225 93.397000 4 835 1 chr5A.!!$R1 831
4 TraesCS2D01G363900 chr5A 643459713 643460539 826 True 1184.000000 1184 92.455000 1 834 1 chr5A.!!$R2 833
5 TraesCS2D01G363900 chr3D 376917904 376918738 834 False 1221.000000 1221 93.198000 3 831 1 chr3D.!!$F1 828
6 TraesCS2D01G363900 chr1D 139116464 139117297 833 True 1219.000000 1219 93.087000 1 835 1 chr1D.!!$R1 834
7 TraesCS2D01G363900 chr7D 39011497 39012305 808 True 1208.000000 1208 93.447000 8 830 1 chr7D.!!$R1 822
8 TraesCS2D01G363900 chr7B 424146938 424147763 825 True 1181.000000 1181 92.372000 3 839 1 chr7B.!!$R1 836
9 TraesCS2D01G363900 chr6A 158240372 158241198 826 False 1179.000000 1179 92.410000 4 831 1 chr6A.!!$F1 827
10 TraesCS2D01G363900 chr5B 344241267 344242094 827 True 1170.000000 1170 92.115000 1 835 1 chr5B.!!$R1 834
11 TraesCS2D01G363900 chr2B 548388755 548391146 2391 True 724.000000 1083 89.747333 834 3144 3 chr2B.!!$R2 2310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1014 0.039074 ACTCTCACAAGAAGACGCCG 60.039 55.0 0.0 0.0 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2868 3474 0.03831 GCAGGGTCTTAGGCCTTGTT 59.962 55.0 12.58 0.0 35.77 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.480137 CTCAGACACTCCAGCCTTAGG 59.520 57.143 0.00 0.00 0.00 2.69
216 217 0.387239 GCTTTGATGAACACGTGCCC 60.387 55.000 17.22 8.21 0.00 5.36
297 298 3.411446 TGACAATGACGCTTGGAAGAAT 58.589 40.909 0.00 0.00 0.00 2.40
368 369 5.163673 GCAGGATTTGAAGAAGATGGAAGAC 60.164 44.000 0.00 0.00 0.00 3.01
458 471 5.205056 GAGAGGAAGAGGAAGATCTGGTAA 58.795 45.833 0.00 0.00 0.00 2.85
600 615 6.014925 TGTGTGGTAAGCTCATCACTAGTTAA 60.015 38.462 1.03 0.00 0.00 2.01
624 639 3.753272 AGTGATGACAACACCTTATGCAC 59.247 43.478 11.83 0.00 38.82 4.57
645 660 2.223595 CGTTGCAACCAAACACCATGTA 60.224 45.455 23.42 0.00 31.68 2.29
650 671 7.316640 GTTGCAACCAAACACCATGTAATATA 58.683 34.615 19.15 0.00 31.68 0.86
668 689 1.316651 TATGCGCCTAATGCAATGCA 58.683 45.000 11.44 11.44 46.87 3.96
670 691 1.314534 TGCGCCTAATGCAATGCAGT 61.315 50.000 14.98 14.44 43.65 4.40
680 701 1.202510 TGCAATGCAGTCAACCAAACC 60.203 47.619 2.72 0.00 33.32 3.27
736 757 4.204012 GGCATGTAGGCAACCAAACTATA 58.796 43.478 0.00 0.00 43.51 1.31
746 767 5.336690 GGCAACCAAACTATATGCATATGGG 60.337 44.000 27.62 21.16 38.73 4.00
796 822 0.749649 CTCAATAGAGCCAGCCTCGT 59.250 55.000 0.00 0.00 45.54 4.18
815 842 2.472909 CGGGAAAGCTGAATCGGCC 61.473 63.158 10.91 0.00 36.20 6.13
816 843 2.121538 GGGAAAGCTGAATCGGCCC 61.122 63.158 10.91 4.86 36.20 5.80
831 858 0.820482 GGCCCTGTAACCAAACACGT 60.820 55.000 0.00 0.00 0.00 4.49
847 874 5.479716 AACACGTCCTTTGTTTCTTGTAG 57.520 39.130 0.00 0.00 33.23 2.74
890 917 3.573491 GCCGACCGCCATACAAGC 61.573 66.667 0.00 0.00 0.00 4.01
891 918 2.125310 CCGACCGCCATACAAGCA 60.125 61.111 0.00 0.00 0.00 3.91
984 1014 0.039074 ACTCTCACAAGAAGACGCCG 60.039 55.000 0.00 0.00 0.00 6.46
1045 1087 1.267574 ATTCCTGCGCTCCTTCCTCA 61.268 55.000 9.73 0.00 0.00 3.86
1051 1093 1.684049 CGCTCCTTCCTCACCTCCT 60.684 63.158 0.00 0.00 0.00 3.69
1052 1094 1.671901 CGCTCCTTCCTCACCTCCTC 61.672 65.000 0.00 0.00 0.00 3.71
1053 1095 1.334384 GCTCCTTCCTCACCTCCTCC 61.334 65.000 0.00 0.00 0.00 4.30
1054 1096 0.338120 CTCCTTCCTCACCTCCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
1055 1097 0.336737 TCCTTCCTCACCTCCTCCTC 59.663 60.000 0.00 0.00 0.00 3.71
1056 1098 0.689412 CCTTCCTCACCTCCTCCTCC 60.689 65.000 0.00 0.00 0.00 4.30
1057 1099 0.338120 CTTCCTCACCTCCTCCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
1058 1100 0.336737 TTCCTCACCTCCTCCTCCTC 59.663 60.000 0.00 0.00 0.00 3.71
1059 1101 1.075600 CCTCACCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
1191 1233 0.039035 ACACCGAGCTCTCCTTCTCT 59.961 55.000 12.85 0.00 0.00 3.10
1192 1234 0.455410 CACCGAGCTCTCCTTCTCTG 59.545 60.000 12.85 0.00 0.00 3.35
1264 1306 2.365370 AGGAGGAGCAGGAGCAGG 60.365 66.667 0.00 0.00 45.49 4.85
1473 1515 2.349755 GGCAACGCCCTGTTCCTA 59.650 61.111 0.00 0.00 44.06 2.94
1534 1580 3.216187 AGCGGCTCTACTATCTTCTCA 57.784 47.619 0.00 0.00 0.00 3.27
1558 1605 5.959618 ATTTACTGTTAGTTTGCCACTCC 57.040 39.130 0.00 0.00 36.88 3.85
1567 1614 6.155565 TGTTAGTTTGCCACTCCTAGCTATAA 59.844 38.462 0.00 0.00 36.88 0.98
1572 1620 4.483950 TGCCACTCCTAGCTATAATCACT 58.516 43.478 0.00 0.00 0.00 3.41
1581 1629 9.823647 CTCCTAGCTATAATCACTTTCTTGAAA 57.176 33.333 0.00 0.00 0.00 2.69
1599 1647 7.763356 TCTTGAAAAGTTCTACTATCTCCTCG 58.237 38.462 0.00 0.00 46.34 4.63
1620 1668 3.609175 CGTTGATGTTCTTGGCGTTCATT 60.609 43.478 0.00 0.00 0.00 2.57
1622 1670 4.944962 TGATGTTCTTGGCGTTCATTAG 57.055 40.909 0.00 0.00 0.00 1.73
1623 1671 4.323417 TGATGTTCTTGGCGTTCATTAGT 58.677 39.130 0.00 0.00 0.00 2.24
1624 1672 4.759693 TGATGTTCTTGGCGTTCATTAGTT 59.240 37.500 0.00 0.00 0.00 2.24
1625 1673 4.481930 TGTTCTTGGCGTTCATTAGTTG 57.518 40.909 0.00 0.00 0.00 3.16
1627 1675 5.057819 TGTTCTTGGCGTTCATTAGTTGTA 58.942 37.500 0.00 0.00 0.00 2.41
1628 1676 5.527951 TGTTCTTGGCGTTCATTAGTTGTAA 59.472 36.000 0.00 0.00 0.00 2.41
1636 1684 7.543172 TGGCGTTCATTAGTTGTAAGTAACTAG 59.457 37.037 0.00 0.00 42.31 2.57
1666 1714 1.742411 CGTTGGTGGCATCCGTAATCT 60.742 52.381 0.00 0.00 0.00 2.40
1674 1722 3.068165 TGGCATCCGTAATCTACAGTCAG 59.932 47.826 0.00 0.00 0.00 3.51
1680 1728 2.921121 CGTAATCTACAGTCAGCGCAAA 59.079 45.455 11.47 0.00 0.00 3.68
1695 1743 2.472488 GCGCAAATGAGTTTTGGAACTG 59.528 45.455 0.30 0.00 45.88 3.16
1701 1749 6.144402 GCAAATGAGTTTTGGAACTGTATGTG 59.856 38.462 0.00 0.00 45.88 3.21
1723 1771 1.139498 TGCCATTCTCCCAAGTCCCA 61.139 55.000 0.00 0.00 0.00 4.37
1766 1814 3.596214 GGTTTCAAAGATGTCGGCTAGA 58.404 45.455 0.00 0.00 0.00 2.43
1789 2063 6.825721 AGACTCTTTCTTCTTTCTGCAGAAAA 59.174 34.615 34.71 23.52 42.72 2.29
1796 2070 6.924111 TCTTCTTTCTGCAGAAAACAAAAGT 58.076 32.000 34.71 0.00 42.72 2.66
1820 2094 6.709018 ACTGTGCAAAATTTAACCAGTAGT 57.291 33.333 9.61 4.79 0.00 2.73
1879 2154 5.563592 TGATGAATGAATCAGGTGAAGTGT 58.436 37.500 0.00 0.00 42.53 3.55
2062 2337 3.066190 TACGCTCCCTCCACCACG 61.066 66.667 0.00 0.00 0.00 4.94
2073 2348 1.732259 CTCCACCACGCAAATACTGTC 59.268 52.381 0.00 0.00 0.00 3.51
2074 2349 0.802494 CCACCACGCAAATACTGTCC 59.198 55.000 0.00 0.00 0.00 4.02
2077 2352 3.331150 CACCACGCAAATACTGTCCTAA 58.669 45.455 0.00 0.00 0.00 2.69
2209 2491 2.783935 GAGGACGAGGACGACGAC 59.216 66.667 0.00 0.00 42.66 4.34
2252 2540 3.845259 GATCACCCGGGCGTGCTA 61.845 66.667 24.08 0.00 33.57 3.49
2322 2612 0.833287 AGATGGGCTAACGATGTGCT 59.167 50.000 0.00 0.00 0.00 4.40
2329 2619 1.061711 GCTAACGATGTGCTTGCTGAG 59.938 52.381 0.00 0.00 0.00 3.35
2346 2640 3.747010 GCTGAGGATGATCATGCTTGTAG 59.253 47.826 27.90 24.21 39.68 2.74
2347 2641 4.743045 GCTGAGGATGATCATGCTTGTAGT 60.743 45.833 27.90 7.59 39.68 2.73
2349 2643 6.676990 TGAGGATGATCATGCTTGTAGTAT 57.323 37.500 27.90 6.13 39.68 2.12
2350 2644 7.071069 TGAGGATGATCATGCTTGTAGTATT 57.929 36.000 27.90 5.41 39.68 1.89
2351 2645 6.932960 TGAGGATGATCATGCTTGTAGTATTG 59.067 38.462 27.90 0.00 39.68 1.90
2358 2652 6.494893 TCATGCTTGTAGTATTGTGTTTCC 57.505 37.500 0.00 0.00 0.00 3.13
2365 2659 6.768029 TGTAGTATTGTGTTTCCGTGTAAC 57.232 37.500 0.00 0.00 0.00 2.50
2394 2688 3.851845 TTTGGACGGTCGAGGTGCG 62.852 63.158 1.43 0.00 42.69 5.34
2400 2694 4.664677 GGTCGAGGTGCGTGCACT 62.665 66.667 22.82 10.26 45.52 4.40
2423 2717 8.492748 CACTTGCTACAGAATAAAGAACGTAAA 58.507 33.333 0.00 0.00 0.00 2.01
2424 2718 8.493547 ACTTGCTACAGAATAAAGAACGTAAAC 58.506 33.333 0.00 0.00 0.00 2.01
2425 2719 7.041187 TGCTACAGAATAAAGAACGTAAACG 57.959 36.000 0.04 0.04 46.33 3.60
2433 2727 2.159327 AGAACGTAAACGGTTGAGGG 57.841 50.000 7.50 0.00 40.66 4.30
2434 2728 1.688197 AGAACGTAAACGGTTGAGGGA 59.312 47.619 7.50 0.00 40.66 4.20
2446 2740 0.332632 TTGAGGGAATGGAAGGCTGG 59.667 55.000 0.00 0.00 0.00 4.85
2488 2782 2.341257 CGTCTGCAGATGCTAAGTTGT 58.659 47.619 22.45 0.00 42.66 3.32
2489 2783 2.346847 CGTCTGCAGATGCTAAGTTGTC 59.653 50.000 22.45 2.86 42.66 3.18
2508 2804 8.630054 AGTTGTCACTATGTTTATTGGCTAAA 57.370 30.769 0.00 0.00 0.00 1.85
2527 2823 7.456902 TGGCTAAATTATAGGAGTACTAAGGGG 59.543 40.741 0.00 0.00 34.79 4.79
2528 2824 7.092979 GGCTAAATTATAGGAGTACTAAGGGGG 60.093 44.444 0.00 0.00 34.79 5.40
2529 2825 7.457218 GCTAAATTATAGGAGTACTAAGGGGGT 59.543 40.741 0.00 0.00 34.79 4.95
2530 2826 7.628501 AAATTATAGGAGTACTAAGGGGGTG 57.371 40.000 0.00 0.00 34.79 4.61
2532 2828 4.639019 ATAGGAGTACTAAGGGGGTGTT 57.361 45.455 0.00 0.00 34.79 3.32
2534 2830 2.910977 AGGAGTACTAAGGGGGTGTTTG 59.089 50.000 0.00 0.00 0.00 2.93
2535 2831 2.641321 GGAGTACTAAGGGGGTGTTTGT 59.359 50.000 0.00 0.00 0.00 2.83
2536 2832 3.073503 GGAGTACTAAGGGGGTGTTTGTT 59.926 47.826 0.00 0.00 0.00 2.83
2537 2833 4.446745 GGAGTACTAAGGGGGTGTTTGTTT 60.447 45.833 0.00 0.00 0.00 2.83
2538 2834 4.722220 AGTACTAAGGGGGTGTTTGTTTC 58.278 43.478 0.00 0.00 0.00 2.78
2540 2836 3.983821 ACTAAGGGGGTGTTTGTTTCAA 58.016 40.909 0.00 0.00 0.00 2.69
2541 2837 3.958147 ACTAAGGGGGTGTTTGTTTCAAG 59.042 43.478 0.00 0.00 0.00 3.02
2542 2838 1.788229 AGGGGGTGTTTGTTTCAAGG 58.212 50.000 0.00 0.00 0.00 3.61
2543 2839 0.756294 GGGGGTGTTTGTTTCAAGGG 59.244 55.000 0.00 0.00 0.00 3.95
2544 2840 1.689892 GGGGGTGTTTGTTTCAAGGGA 60.690 52.381 0.00 0.00 0.00 4.20
2559 2855 1.892209 AGGGACTTTTTGGTGTAGCG 58.108 50.000 0.00 0.00 27.25 4.26
2560 2856 1.418637 AGGGACTTTTTGGTGTAGCGA 59.581 47.619 0.00 0.00 27.25 4.93
2561 2857 1.534163 GGGACTTTTTGGTGTAGCGAC 59.466 52.381 0.00 0.00 0.00 5.19
2562 2858 2.490991 GGACTTTTTGGTGTAGCGACT 58.509 47.619 0.00 0.00 0.00 4.18
2564 2860 3.678548 GGACTTTTTGGTGTAGCGACTAG 59.321 47.826 0.00 0.00 0.00 2.57
2567 2863 5.362263 ACTTTTTGGTGTAGCGACTAGAAA 58.638 37.500 0.00 0.00 0.00 2.52
2570 2866 5.917541 TTTGGTGTAGCGACTAGAAAAAG 57.082 39.130 0.00 0.00 0.00 2.27
2572 2868 4.952460 TGGTGTAGCGACTAGAAAAAGTT 58.048 39.130 0.00 0.00 0.00 2.66
2573 2869 5.362263 TGGTGTAGCGACTAGAAAAAGTTT 58.638 37.500 0.00 0.00 0.00 2.66
2575 2871 5.695363 GGTGTAGCGACTAGAAAAAGTTTCT 59.305 40.000 8.23 8.23 0.00 2.52
2576 2872 6.202379 GGTGTAGCGACTAGAAAAAGTTTCTT 59.798 38.462 8.44 0.00 0.00 2.52
2577 2873 7.254692 GGTGTAGCGACTAGAAAAAGTTTCTTT 60.255 37.037 8.44 0.00 0.00 2.52
2578 2874 8.121086 GTGTAGCGACTAGAAAAAGTTTCTTTT 58.879 33.333 8.44 0.00 0.00 2.27
2579 2875 9.316730 TGTAGCGACTAGAAAAAGTTTCTTTTA 57.683 29.630 8.44 0.00 0.00 1.52
2581 2877 7.862648 AGCGACTAGAAAAAGTTTCTTTTAGG 58.137 34.615 8.44 0.00 0.00 2.69
2583 2879 7.041576 GCGACTAGAAAAAGTTTCTTTTAGGGA 60.042 37.037 8.44 0.00 0.00 4.20
2584 2880 8.281194 CGACTAGAAAAAGTTTCTTTTAGGGAC 58.719 37.037 8.44 0.00 0.00 4.46
2603 2899 7.578458 AGGGACTAAAAGTTACTTTATGGGA 57.422 36.000 10.97 0.00 36.02 4.37
2605 2901 7.239143 AGGGACTAAAAGTTACTTTATGGGACT 59.761 37.037 10.97 3.92 36.02 3.85
2606 2902 8.542926 GGGACTAAAAGTTACTTTATGGGACTA 58.457 37.037 10.97 0.00 31.99 2.59
2619 2915 8.606830 ACTTTATGGGACTAAATGAAGAAGACT 58.393 33.333 0.00 0.00 0.00 3.24
2620 2916 9.103861 CTTTATGGGACTAAATGAAGAAGACTC 57.896 37.037 0.00 0.00 0.00 3.36
2621 2917 6.882768 ATGGGACTAAATGAAGAAGACTCT 57.117 37.500 0.00 0.00 0.00 3.24
2623 2919 5.780282 TGGGACTAAATGAAGAAGACTCTCA 59.220 40.000 0.00 0.00 0.00 3.27
2624 2920 6.270000 TGGGACTAAATGAAGAAGACTCTCAA 59.730 38.462 0.00 0.00 0.00 3.02
2625 2921 6.816140 GGGACTAAATGAAGAAGACTCTCAAG 59.184 42.308 0.00 0.00 0.00 3.02
2626 2922 6.816140 GGACTAAATGAAGAAGACTCTCAAGG 59.184 42.308 0.00 0.00 0.00 3.61
2627 2923 7.310113 GGACTAAATGAAGAAGACTCTCAAGGA 60.310 40.741 0.00 0.00 0.00 3.36
2628 2924 7.610865 ACTAAATGAAGAAGACTCTCAAGGAG 58.389 38.462 0.00 0.00 46.87 3.69
2640 2936 4.068599 CTCTCAAGGAGTCTTTTTGGGAC 58.931 47.826 2.39 0.00 37.30 4.46
2641 2937 3.716872 TCTCAAGGAGTCTTTTTGGGACT 59.283 43.478 0.00 0.00 45.37 3.85
2642 2938 4.166144 TCTCAAGGAGTCTTTTTGGGACTT 59.834 41.667 0.00 0.00 43.13 3.01
2645 2941 5.127031 TCAAGGAGTCTTTTTGGGACTTTTG 59.873 40.000 0.00 0.00 43.13 2.44
2649 2945 3.035363 GTCTTTTTGGGACTTTTGGGGA 58.965 45.455 0.00 0.00 0.00 4.81
2650 2946 3.035363 TCTTTTTGGGACTTTTGGGGAC 58.965 45.455 0.00 0.00 0.00 4.46
2651 2947 2.858787 TTTTGGGACTTTTGGGGACT 57.141 45.000 0.00 0.00 0.00 3.85
2652 2948 2.858787 TTTGGGACTTTTGGGGACTT 57.141 45.000 0.00 0.00 0.00 3.01
2653 2949 2.858787 TTGGGACTTTTGGGGACTTT 57.141 45.000 0.00 0.00 0.00 2.66
2654 2950 2.858787 TGGGACTTTTGGGGACTTTT 57.141 45.000 0.00 0.00 0.00 2.27
2655 2951 2.673258 TGGGACTTTTGGGGACTTTTC 58.327 47.619 0.00 0.00 0.00 2.29
2656 2952 1.968493 GGGACTTTTGGGGACTTTTCC 59.032 52.381 0.00 0.00 41.95 3.13
2657 2953 2.673258 GGACTTTTGGGGACTTTTCCA 58.327 47.619 0.00 0.00 44.98 3.53
2659 2955 3.181469 GGACTTTTGGGGACTTTTCCAAC 60.181 47.826 0.00 0.00 44.98 3.77
2663 2959 4.414337 TTTGGGGACTTTTCCAACAATG 57.586 40.909 0.00 0.00 44.98 2.82
2664 2960 1.691434 TGGGGACTTTTCCAACAATGC 59.309 47.619 0.00 0.00 44.98 3.56
2666 2962 1.001974 GGGACTTTTCCAACAATGCCC 59.998 52.381 0.00 0.00 44.98 5.36
2667 2963 1.001974 GGACTTTTCCAACAATGCCCC 59.998 52.381 0.00 0.00 42.30 5.80
2668 2964 1.970640 GACTTTTCCAACAATGCCCCT 59.029 47.619 0.00 0.00 0.00 4.79
2672 2968 1.442886 TTCCAACAATGCCCCTCCCT 61.443 55.000 0.00 0.00 0.00 4.20
2673 2969 1.380380 CCAACAATGCCCCTCCCTC 60.380 63.158 0.00 0.00 0.00 4.30
2675 2971 1.856873 AACAATGCCCCTCCCTCCA 60.857 57.895 0.00 0.00 0.00 3.86
2676 2972 1.224003 AACAATGCCCCTCCCTCCAT 61.224 55.000 0.00 0.00 0.00 3.41
2677 2973 1.152368 CAATGCCCCTCCCTCCATC 59.848 63.158 0.00 0.00 0.00 3.51
2681 2977 2.087461 GCCCCTCCCTCCATCCATT 61.087 63.158 0.00 0.00 0.00 3.16
2682 2978 1.849116 CCCCTCCCTCCATCCATTG 59.151 63.158 0.00 0.00 0.00 2.82
2685 2981 1.152368 CTCCCTCCATCCATTGGCC 59.848 63.158 0.00 0.00 46.01 5.36
2686 2982 2.203394 CCCTCCATCCATTGGCCG 60.203 66.667 0.00 0.00 46.01 6.13
2688 2984 2.756042 CCTCCATCCATTGGCCGGA 61.756 63.158 5.05 11.22 46.01 5.14
2689 2985 1.526917 CTCCATCCATTGGCCGGAC 60.527 63.158 5.05 0.56 46.01 4.79
2690 2986 2.901840 CCATCCATTGGCCGGACG 60.902 66.667 5.05 0.00 39.09 4.79
2691 2987 3.585990 CATCCATTGGCCGGACGC 61.586 66.667 5.05 0.00 34.69 5.19
2701 2997 4.935495 CCGGACGCCCCCATGATG 62.935 72.222 0.00 0.00 0.00 3.07
2702 2998 4.175337 CGGACGCCCCCATGATGT 62.175 66.667 0.00 0.00 0.00 3.06
2703 2999 2.275418 GGACGCCCCCATGATGTT 59.725 61.111 0.00 0.00 0.00 2.71
2704 3000 2.120909 GGACGCCCCCATGATGTTG 61.121 63.158 0.00 0.00 0.00 3.33
2706 3002 0.965363 GACGCCCCCATGATGTTGTT 60.965 55.000 0.00 0.00 0.00 2.83
2707 3003 0.541764 ACGCCCCCATGATGTTGTTT 60.542 50.000 0.00 0.00 0.00 2.83
2709 3005 0.249955 GCCCCCATGATGTTGTTTGG 59.750 55.000 0.00 0.00 0.00 3.28
2711 3007 1.977129 CCCCCATGATGTTGTTTGGTT 59.023 47.619 0.00 0.00 0.00 3.67
2712 3008 2.289569 CCCCCATGATGTTGTTTGGTTG 60.290 50.000 0.00 0.00 0.00 3.77
2713 3009 2.368221 CCCCATGATGTTGTTTGGTTGT 59.632 45.455 0.00 0.00 0.00 3.32
2714 3010 3.181456 CCCCATGATGTTGTTTGGTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
2715 3011 4.039730 CCCCATGATGTTGTTTGGTTGTTA 59.960 41.667 0.00 0.00 0.00 2.41
2716 3012 5.279910 CCCCATGATGTTGTTTGGTTGTTAT 60.280 40.000 0.00 0.00 0.00 1.89
2717 3013 6.229733 CCCATGATGTTGTTTGGTTGTTATT 58.770 36.000 0.00 0.00 0.00 1.40
2718 3014 6.709846 CCCATGATGTTGTTTGGTTGTTATTT 59.290 34.615 0.00 0.00 0.00 1.40
2721 3327 9.649024 CATGATGTTGTTTGGTTGTTATTTTTC 57.351 29.630 0.00 0.00 0.00 2.29
2725 3331 9.877178 ATGTTGTTTGGTTGTTATTTTTCTGTA 57.123 25.926 0.00 0.00 0.00 2.74
2733 3339 9.675464 TGGTTGTTATTTTTCTGTATACTAGGG 57.325 33.333 4.17 0.00 0.00 3.53
2734 3340 9.117183 GGTTGTTATTTTTCTGTATACTAGGGG 57.883 37.037 4.17 0.00 0.00 4.79
2735 3341 9.676861 GTTGTTATTTTTCTGTATACTAGGGGT 57.323 33.333 4.17 0.00 0.00 4.95
2742 3348 8.612486 TTTTCTGTATACTAGGGGTAACATGA 57.388 34.615 0.00 0.00 39.74 3.07
2755 3361 8.706322 AGGGGTAACATGATCATTTAATAACC 57.294 34.615 5.16 8.61 39.74 2.85
2757 3363 8.793592 GGGGTAACATGATCATTTAATAACCTC 58.206 37.037 5.16 4.70 39.74 3.85
2762 3368 8.413309 ACATGATCATTTAATAACCTCCATGG 57.587 34.615 5.16 4.97 42.93 3.66
2763 3369 8.226810 ACATGATCATTTAATAACCTCCATGGA 58.773 33.333 15.27 15.27 39.71 3.41
2764 3370 8.737175 CATGATCATTTAATAACCTCCATGGAG 58.263 37.037 31.69 31.69 41.63 3.86
2774 3380 2.478872 CTCCATGGAGGGACTAAGGA 57.521 55.000 31.14 0.00 41.55 3.36
2775 3381 2.043227 CTCCATGGAGGGACTAAGGAC 58.957 57.143 31.14 0.00 41.55 3.85
2776 3382 1.651770 TCCATGGAGGGACTAAGGACT 59.348 52.381 11.44 0.00 41.55 3.85
2777 3383 2.045885 TCCATGGAGGGACTAAGGACTT 59.954 50.000 11.44 0.00 41.55 3.01
2778 3384 2.846827 CCATGGAGGGACTAAGGACTTT 59.153 50.000 5.56 0.00 41.55 2.66
2779 3385 3.267031 CCATGGAGGGACTAAGGACTTTT 59.733 47.826 5.56 0.00 41.55 2.27
2780 3386 4.263949 CCATGGAGGGACTAAGGACTTTTT 60.264 45.833 5.56 0.00 41.55 1.94
2781 3387 5.045140 CCATGGAGGGACTAAGGACTTTTTA 60.045 44.000 5.56 0.00 41.55 1.52
2783 3389 5.160386 TGGAGGGACTAAGGACTTTTTAGT 58.840 41.667 0.00 0.00 41.55 2.24
2792 3398 9.978044 GACTAAGGACTTTTTAGTCTCTGTAAA 57.022 33.333 14.63 0.00 46.89 2.01
2793 3399 9.761504 ACTAAGGACTTTTTAGTCTCTGTAAAC 57.238 33.333 5.40 0.00 36.84 2.01
2794 3400 9.760077 CTAAGGACTTTTTAGTCTCTGTAAACA 57.240 33.333 5.40 0.00 38.74 2.83
2799 3405 9.704098 GACTTTTTAGTCTCTGTAAACAAACAG 57.296 33.333 0.00 0.00 46.78 3.16
2800 3406 8.674607 ACTTTTTAGTCTCTGTAAACAAACAGG 58.325 33.333 4.32 0.00 45.69 4.00
2806 3412 4.781775 TCTGTAAACAAACAGGGAAGGA 57.218 40.909 4.32 0.00 45.69 3.36
2807 3413 4.457466 TCTGTAAACAAACAGGGAAGGAC 58.543 43.478 4.32 0.00 45.69 3.85
2808 3414 4.165372 TCTGTAAACAAACAGGGAAGGACT 59.835 41.667 4.32 0.00 45.69 3.85
2809 3415 4.862371 TGTAAACAAACAGGGAAGGACTT 58.138 39.130 0.00 0.00 0.00 3.01
2811 3417 5.717654 TGTAAACAAACAGGGAAGGACTTTT 59.282 36.000 0.00 0.00 0.00 2.27
2814 3420 6.465439 AACAAACAGGGAAGGACTTTTTAG 57.535 37.500 0.00 0.00 0.00 1.85
2815 3421 4.893524 ACAAACAGGGAAGGACTTTTTAGG 59.106 41.667 0.00 0.00 0.00 2.69
2816 3422 3.808834 ACAGGGAAGGACTTTTTAGGG 57.191 47.619 0.00 0.00 0.00 3.53
2819 3425 3.330998 CAGGGAAGGACTTTTTAGGGACT 59.669 47.826 0.00 0.00 46.37 3.85
2820 3426 4.534897 CAGGGAAGGACTTTTTAGGGACTA 59.465 45.833 0.00 0.00 41.75 2.59
2821 3427 5.191921 CAGGGAAGGACTTTTTAGGGACTAT 59.808 44.000 0.00 0.00 42.38 2.12
2822 3428 5.191921 AGGGAAGGACTTTTTAGGGACTATG 59.808 44.000 0.00 0.00 42.38 2.23
2823 3429 5.437946 GGAAGGACTTTTTAGGGACTATGG 58.562 45.833 0.00 0.00 42.38 2.74
2824 3430 5.191124 GGAAGGACTTTTTAGGGACTATGGA 59.809 44.000 0.00 0.00 42.38 3.41
2826 3432 5.351405 AGGACTTTTTAGGGACTATGGACT 58.649 41.667 0.00 0.00 42.38 3.85
2828 3434 6.274908 AGGACTTTTTAGGGACTATGGACTTT 59.725 38.462 0.00 0.00 42.38 2.66
2829 3435 6.946583 GGACTTTTTAGGGACTATGGACTTTT 59.053 38.462 0.00 0.00 42.38 2.27
2831 3437 9.511272 GACTTTTTAGGGACTATGGACTTTTTA 57.489 33.333 0.00 0.00 42.38 1.52
2832 3438 9.516546 ACTTTTTAGGGACTATGGACTTTTTAG 57.483 33.333 0.00 0.00 42.38 1.85
2833 3439 9.516546 CTTTTTAGGGACTATGGACTTTTTAGT 57.483 33.333 0.00 0.00 42.38 2.24
2834 3440 9.871175 TTTTTAGGGACTATGGACTTTTTAGTT 57.129 29.630 0.00 0.00 42.38 2.24
2835 3441 8.857694 TTTAGGGACTATGGACTTTTTAGTTG 57.142 34.615 0.00 0.00 42.38 3.16
2836 3442 5.816682 AGGGACTATGGACTTTTTAGTTGG 58.183 41.667 0.00 0.00 36.02 3.77
2837 3443 4.948004 GGGACTATGGACTTTTTAGTTGGG 59.052 45.833 0.00 0.00 0.00 4.12
2838 3444 5.280830 GGGACTATGGACTTTTTAGTTGGGA 60.281 44.000 0.00 0.00 0.00 4.37
2839 3445 5.646793 GGACTATGGACTTTTTAGTTGGGAC 59.353 44.000 0.00 0.00 0.00 4.46
2840 3446 6.449830 ACTATGGACTTTTTAGTTGGGACT 57.550 37.500 0.00 0.00 39.97 3.85
2841 3447 7.310858 GGACTATGGACTTTTTAGTTGGGACTA 60.311 40.741 0.00 0.00 37.33 2.59
2842 3448 7.621796 ACTATGGACTTTTTAGTTGGGACTAG 58.378 38.462 0.00 0.00 39.43 2.57
2844 3450 6.503560 TGGACTTTTTAGTTGGGACTAGAA 57.496 37.500 0.00 0.00 39.43 2.10
2846 3452 7.348033 TGGACTTTTTAGTTGGGACTAGAAAA 58.652 34.615 0.00 5.68 40.10 2.29
2847 3453 7.835181 TGGACTTTTTAGTTGGGACTAGAAAAA 59.165 33.333 0.00 0.00 40.10 1.94
2848 3454 8.350722 GGACTTTTTAGTTGGGACTAGAAAAAG 58.649 37.037 17.36 17.36 45.76 2.27
2849 3455 8.818622 ACTTTTTAGTTGGGACTAGAAAAAGT 57.181 30.769 18.18 18.18 46.80 2.66
2855 3461 7.818997 AGTTGGGACTAGAAAAAGTTTTAGG 57.181 36.000 0.24 0.00 33.32 2.69
2856 3462 7.580007 AGTTGGGACTAGAAAAAGTTTTAGGA 58.420 34.615 0.24 0.00 33.32 2.94
2857 3463 7.501559 AGTTGGGACTAGAAAAAGTTTTAGGAC 59.498 37.037 0.24 0.00 33.32 3.85
2858 3464 7.145474 TGGGACTAGAAAAAGTTTTAGGACT 57.855 36.000 0.24 2.61 0.00 3.85
2860 3466 8.716779 TGGGACTAGAAAAAGTTTTAGGACTTA 58.283 33.333 0.24 0.00 38.86 2.24
2867 3473 9.416284 AGAAAAAGTTTTAGGACTTATGAACCA 57.584 29.630 0.24 0.00 38.86 3.67
2870 3476 9.811995 AAAAGTTTTAGGACTTATGAACCAAAC 57.188 29.630 0.00 0.00 38.86 2.93
2871 3477 8.528044 AAGTTTTAGGACTTATGAACCAAACA 57.472 30.769 0.00 0.00 38.06 2.83
2872 3478 8.528044 AGTTTTAGGACTTATGAACCAAACAA 57.472 30.769 0.00 0.00 0.00 2.83
2873 3479 8.630037 AGTTTTAGGACTTATGAACCAAACAAG 58.370 33.333 0.00 0.00 0.00 3.16
2882 3519 3.219281 TGAACCAAACAAGGCCTAAGAC 58.781 45.455 5.16 0.00 0.00 3.01
2895 3542 1.689575 CCTAAGACCCTGCAGGCTCTA 60.690 57.143 27.30 15.78 40.58 2.43
2901 3548 2.370189 GACCCTGCAGGCTCTATGTATT 59.630 50.000 28.39 0.00 40.58 1.89
2903 3550 3.325135 ACCCTGCAGGCTCTATGTATTAC 59.675 47.826 28.39 0.00 40.58 1.89
2929 3576 2.789409 ATTACCTGCTTGTGGAGTCC 57.211 50.000 0.73 0.73 0.00 3.85
3002 3651 1.209504 CTTTATGCTTCCGTGGGAGGA 59.790 52.381 0.00 0.00 38.79 3.71
3003 3652 0.830648 TTATGCTTCCGTGGGAGGAG 59.169 55.000 0.00 0.00 41.98 3.69
3004 3653 0.032515 TATGCTTCCGTGGGAGGAGA 60.033 55.000 0.00 0.00 41.98 3.71
3020 3677 4.826556 GAGGAGACTGCAACTTCAATAGT 58.173 43.478 0.00 0.00 44.43 2.12
3032 3689 1.803334 TCAATAGTTGCGTCACCACC 58.197 50.000 0.00 0.00 0.00 4.61
3034 3691 0.672401 AATAGTTGCGTCACCACCCG 60.672 55.000 0.00 0.00 0.00 5.28
3035 3692 1.537814 ATAGTTGCGTCACCACCCGA 61.538 55.000 0.00 0.00 0.00 5.14
3036 3693 2.149803 TAGTTGCGTCACCACCCGAG 62.150 60.000 0.00 0.00 0.00 4.63
3037 3694 4.980805 TTGCGTCACCACCCGAGC 62.981 66.667 0.00 0.00 0.00 5.03
3039 3696 4.760047 GCGTCACCACCCGAGCAT 62.760 66.667 0.00 0.00 0.00 3.79
3040 3697 2.509336 CGTCACCACCCGAGCATC 60.509 66.667 0.00 0.00 0.00 3.91
3041 3698 2.982130 GTCACCACCCGAGCATCT 59.018 61.111 0.00 0.00 0.00 2.90
3042 3699 1.153549 GTCACCACCCGAGCATCTC 60.154 63.158 0.00 0.00 0.00 2.75
3043 3700 2.187946 CACCACCCGAGCATCTCC 59.812 66.667 0.00 0.00 0.00 3.71
3044 3701 2.284625 ACCACCCGAGCATCTCCA 60.285 61.111 0.00 0.00 0.00 3.86
3045 3702 1.918293 ACCACCCGAGCATCTCCAA 60.918 57.895 0.00 0.00 0.00 3.53
3069 3726 4.943705 ACCGATGATGTAAAAGTTGATGCT 59.056 37.500 0.00 0.00 0.00 3.79
3088 3745 8.246908 TGATGCTCTAAAATTGAATTTTGCAG 57.753 30.769 22.30 17.81 39.99 4.41
3102 3759 4.543590 TTTTGCAGTAGGAGAGAGAAGG 57.456 45.455 0.00 0.00 0.00 3.46
3103 3760 2.909504 TGCAGTAGGAGAGAGAAGGT 57.090 50.000 0.00 0.00 0.00 3.50
3117 3774 2.232208 GAGAAGGTTTTTGGGGCATCAG 59.768 50.000 0.00 0.00 0.00 2.90
3137 3794 3.468304 GCAAAGTTTTTGCTGCAACAA 57.532 38.095 15.72 12.43 41.87 2.83
3140 3797 4.396519 CAAAGTTTTTGCTGCAACAACAG 58.603 39.130 33.12 22.89 36.75 3.16
3145 3802 1.321805 TTGCTGCAACAACAGTGCCT 61.322 50.000 11.69 0.00 41.49 4.75
3148 3805 1.335324 GCTGCAACAACAGTGCCTTAG 60.335 52.381 0.00 0.00 41.49 2.18
3158 3833 5.362430 ACAACAGTGCCTTAGAATTTGGAAA 59.638 36.000 0.00 0.00 0.00 3.13
3179 3854 7.234371 TGGAAACCAATTGAAACATAAGATCCA 59.766 33.333 7.12 4.99 0.00 3.41
3182 3857 7.537596 ACCAATTGAAACATAAGATCCAACA 57.462 32.000 7.12 0.00 0.00 3.33
3185 3860 8.739039 CCAATTGAAACATAAGATCCAACAGTA 58.261 33.333 7.12 0.00 0.00 2.74
3194 3869 3.030291 AGATCCAACAGTAGAGAGGCAG 58.970 50.000 0.00 0.00 0.00 4.85
3200 3875 0.032615 CAGTAGAGAGGCAGGGAGGT 60.033 60.000 0.00 0.00 0.00 3.85
3224 3899 2.276863 CTGACTGTCGCCGAGCAGAT 62.277 60.000 18.83 7.29 36.62 2.90
3246 3921 4.364415 ACTAAAACGCAACTTTCTGCAA 57.636 36.364 0.00 0.00 42.77 4.08
3256 3931 0.499761 CTTTCTGCAAAAACGCGCTG 59.500 50.000 5.73 1.02 33.35 5.18
3279 3954 3.089284 GCACCCAGCTATTAACCAAAGT 58.911 45.455 0.00 0.00 41.15 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.789409 ATGCCCTCTCAACAGTTACC 57.211 50.000 0.00 0.00 0.00 2.85
216 217 0.030101 GCTCGACATCTTCCTCCTCG 59.970 60.000 0.00 0.00 0.00 4.63
297 298 1.777878 TCTGCCCACTCCAACCTTTTA 59.222 47.619 0.00 0.00 0.00 1.52
368 369 0.110328 CTGCTGCTGCTTCTTGTTCG 60.110 55.000 17.00 0.00 40.48 3.95
458 471 2.176247 AGGGGATAGTTCATCGGTGT 57.824 50.000 0.00 0.00 34.12 4.16
600 615 4.826733 TGCATAAGGTGTTGTCATCACTTT 59.173 37.500 13.86 13.86 38.35 2.66
606 621 2.778299 ACGTGCATAAGGTGTTGTCAT 58.222 42.857 0.00 0.00 0.00 3.06
624 639 1.207390 CATGGTGTTTGGTTGCAACG 58.793 50.000 22.67 1.56 0.00 4.10
668 689 1.940242 AACCCGGGGTTTGGTTGACT 61.940 55.000 25.84 0.00 44.33 3.41
670 691 0.554792 TTAACCCGGGGTTTGGTTGA 59.445 50.000 34.78 14.58 44.33 3.18
680 701 2.894765 AGACAACCATTTTTAACCCGGG 59.105 45.455 22.25 22.25 0.00 5.73
760 784 2.440247 GCCGGTTTGAGGGGATGG 60.440 66.667 1.90 0.00 0.00 3.51
791 817 0.108138 ATTCAGCTTTCCCGACGAGG 60.108 55.000 0.00 0.00 40.63 4.63
796 822 1.449601 GCCGATTCAGCTTTCCCGA 60.450 57.895 0.00 0.00 0.00 5.14
801 827 0.618458 TACAGGGCCGATTCAGCTTT 59.382 50.000 0.00 0.00 0.00 3.51
802 828 0.618458 TTACAGGGCCGATTCAGCTT 59.382 50.000 0.00 0.00 0.00 3.74
815 842 2.249844 AGGACGTGTTTGGTTACAGG 57.750 50.000 0.00 0.00 39.23 4.00
816 843 3.375922 ACAAAGGACGTGTTTGGTTACAG 59.624 43.478 19.17 0.00 38.90 2.74
831 858 5.477607 TCGATCCTACAAGAAACAAAGGA 57.522 39.130 0.00 0.00 40.50 3.36
847 874 2.221055 GCACGTGAACCATTATCGATCC 59.779 50.000 22.23 0.00 0.00 3.36
890 917 2.051345 GGAACCGCGTTGCTTGTG 60.051 61.111 4.92 0.00 31.28 3.33
891 918 2.203153 AGGAACCGCGTTGCTTGT 60.203 55.556 4.92 0.00 41.19 3.16
984 1014 1.145738 AGCATCCTCTCCTCTCCTCTC 59.854 57.143 0.00 0.00 0.00 3.20
1045 1087 1.088896 TAGGGGAGGAGGAGGAGGT 59.911 63.158 0.00 0.00 0.00 3.85
1051 1093 4.153330 GGGCGTAGGGGAGGAGGA 62.153 72.222 0.00 0.00 0.00 3.71
1055 1097 4.817909 AAGGGGGCGTAGGGGAGG 62.818 72.222 0.00 0.00 0.00 4.30
1056 1098 3.162154 GAAGGGGGCGTAGGGGAG 61.162 72.222 0.00 0.00 0.00 4.30
1057 1099 4.810184 GGAAGGGGGCGTAGGGGA 62.810 72.222 0.00 0.00 0.00 4.81
1058 1100 4.817909 AGGAAGGGGGCGTAGGGG 62.818 72.222 0.00 0.00 0.00 4.79
1059 1101 3.162154 GAGGAAGGGGGCGTAGGG 61.162 72.222 0.00 0.00 0.00 3.53
1191 1233 3.466836 CTTGCTGAAGGTGTTGTAGACA 58.533 45.455 0.00 0.00 35.42 3.41
1192 1234 2.808543 CCTTGCTGAAGGTGTTGTAGAC 59.191 50.000 0.00 0.00 43.63 2.59
1508 1550 4.561500 AGATAGTAGAGCCGCTAGATCA 57.438 45.455 0.00 0.00 30.28 2.92
1534 1580 7.402862 AGGAGTGGCAAACTAACAGTAAATAT 58.597 34.615 0.00 0.00 40.07 1.28
1572 1620 9.930693 GAGGAGATAGTAGAACTTTTCAAGAAA 57.069 33.333 0.00 0.00 0.00 2.52
1581 1629 6.603997 ACATCAACGAGGAGATAGTAGAACTT 59.396 38.462 0.00 0.00 0.00 2.66
1586 1634 6.627395 AGAACATCAACGAGGAGATAGTAG 57.373 41.667 0.00 0.00 0.00 2.57
1589 1637 5.046529 CCAAGAACATCAACGAGGAGATAG 58.953 45.833 0.00 0.00 0.00 2.08
1599 1647 3.559238 ATGAACGCCAAGAACATCAAC 57.441 42.857 0.00 0.00 0.00 3.18
1624 1672 9.999009 CAACGTATTGATCTCTAGTTACTTACA 57.001 33.333 0.00 0.00 38.15 2.41
1625 1673 9.448294 CCAACGTATTGATCTCTAGTTACTTAC 57.552 37.037 0.00 0.00 38.15 2.34
1627 1675 7.974501 CACCAACGTATTGATCTCTAGTTACTT 59.025 37.037 0.00 0.00 38.15 2.24
1628 1676 7.416438 CCACCAACGTATTGATCTCTAGTTACT 60.416 40.741 0.00 0.00 38.15 2.24
1636 1684 2.627945 TGCCACCAACGTATTGATCTC 58.372 47.619 0.00 0.00 38.15 2.75
1639 1687 2.297701 GGATGCCACCAACGTATTGAT 58.702 47.619 0.00 0.00 38.15 2.57
1643 1691 0.825410 TACGGATGCCACCAACGTAT 59.175 50.000 0.00 0.00 38.77 3.06
1666 1714 2.455674 ACTCATTTGCGCTGACTGTA 57.544 45.000 9.73 0.00 0.00 2.74
1674 1722 2.472488 CAGTTCCAAAACTCATTTGCGC 59.528 45.455 0.00 0.00 43.99 6.09
1680 1728 6.205464 CAGACACATACAGTTCCAAAACTCAT 59.795 38.462 0.00 0.00 43.99 2.90
1695 1743 2.092968 TGGGAGAATGGCAGACACATAC 60.093 50.000 0.00 0.00 0.00 2.39
1701 1749 1.680249 GGACTTGGGAGAATGGCAGAC 60.680 57.143 0.00 0.00 0.00 3.51
1773 1821 7.970614 AGTACTTTTGTTTTCTGCAGAAAGAAG 59.029 33.333 33.76 31.52 43.90 2.85
1789 2063 7.819900 TGGTTAAATTTTGCACAGTACTTTTGT 59.180 29.630 0.00 0.00 0.00 2.83
1796 2070 7.040961 GGACTACTGGTTAAATTTTGCACAGTA 60.041 37.037 16.68 16.68 38.50 2.74
1820 2094 3.165071 TCAAGTCATGAGCAGTACTGGA 58.835 45.455 23.95 9.63 33.04 3.86
1833 2107 1.831106 TCGTACAGGGCATCAAGTCAT 59.169 47.619 0.00 0.00 0.00 3.06
1879 2154 2.035155 TCCGCCCTTCTCGAGTCA 59.965 61.111 13.13 0.00 0.00 3.41
1930 2205 1.226974 CATGATCTCGCCGTCGGTT 60.227 57.895 13.94 0.00 36.13 4.44
1960 2235 4.643387 ACCGCCCACACCAGCTTC 62.643 66.667 0.00 0.00 0.00 3.86
2073 2348 8.750298 TCGAAGGAGCCTAGATTTATTATTAGG 58.250 37.037 0.00 0.00 36.56 2.69
2074 2349 9.796120 CTCGAAGGAGCCTAGATTTATTATTAG 57.204 37.037 0.00 0.00 32.61 1.73
2124 2405 4.605967 GCACGTTGCCACACACCG 62.606 66.667 0.00 0.00 37.42 4.94
2135 2417 3.673484 GTGGCTGCCATGCACGTT 61.673 61.111 26.22 0.00 35.28 3.99
2209 2491 3.717294 CCTCCCCCAAGACCACCG 61.717 72.222 0.00 0.00 0.00 4.94
2216 2504 4.479993 CTGCTCGCCTCCCCCAAG 62.480 72.222 0.00 0.00 0.00 3.61
2322 2612 2.949644 CAAGCATGATCATCCTCAGCAA 59.050 45.455 15.09 0.00 0.00 3.91
2329 2619 6.484643 ACACAATACTACAAGCATGATCATCC 59.515 38.462 4.86 0.00 0.00 3.51
2346 2640 4.612033 GCAGGTTACACGGAAACACAATAC 60.612 45.833 0.00 0.00 0.00 1.89
2347 2641 3.499157 GCAGGTTACACGGAAACACAATA 59.501 43.478 0.00 0.00 0.00 1.90
2349 2643 1.671845 GCAGGTTACACGGAAACACAA 59.328 47.619 0.00 0.00 0.00 3.33
2350 2644 1.301423 GCAGGTTACACGGAAACACA 58.699 50.000 0.00 0.00 0.00 3.72
2351 2645 1.301423 TGCAGGTTACACGGAAACAC 58.699 50.000 0.00 0.00 0.00 3.32
2358 2652 3.489047 CCAAACATTTTGCAGGTTACACG 59.511 43.478 0.00 0.00 0.00 4.49
2365 2659 1.068434 ACCGTCCAAACATTTTGCAGG 59.932 47.619 0.00 0.00 0.00 4.85
2394 2688 5.862924 TCTTTATTCTGTAGCAAGTGCAC 57.137 39.130 9.40 9.40 45.16 4.57
2395 2689 5.107104 CGTTCTTTATTCTGTAGCAAGTGCA 60.107 40.000 6.00 0.00 45.16 4.57
2396 2690 5.107065 ACGTTCTTTATTCTGTAGCAAGTGC 60.107 40.000 0.00 0.00 42.49 4.40
2397 2691 6.467723 ACGTTCTTTATTCTGTAGCAAGTG 57.532 37.500 0.00 0.00 0.00 3.16
2398 2692 8.493547 GTTTACGTTCTTTATTCTGTAGCAAGT 58.506 33.333 0.00 0.00 0.00 3.16
2399 2693 7.682865 CGTTTACGTTCTTTATTCTGTAGCAAG 59.317 37.037 0.00 0.00 34.11 4.01
2400 2694 7.359431 CCGTTTACGTTCTTTATTCTGTAGCAA 60.359 37.037 0.00 0.00 37.74 3.91
2423 2717 0.328258 CCTTCCATTCCCTCAACCGT 59.672 55.000 0.00 0.00 0.00 4.83
2424 2718 1.032114 GCCTTCCATTCCCTCAACCG 61.032 60.000 0.00 0.00 0.00 4.44
2425 2719 0.332972 AGCCTTCCATTCCCTCAACC 59.667 55.000 0.00 0.00 0.00 3.77
2446 2740 4.142687 CGGAATCACCAATGTTTACAGGTC 60.143 45.833 0.00 0.00 38.90 3.85
2508 2804 6.304831 ACACCCCCTTAGTACTCCTATAAT 57.695 41.667 0.00 0.00 0.00 1.28
2511 2807 4.639019 AACACCCCCTTAGTACTCCTAT 57.361 45.455 0.00 0.00 0.00 2.57
2514 2810 2.641321 ACAAACACCCCCTTAGTACTCC 59.359 50.000 0.00 0.00 0.00 3.85
2515 2811 4.362470 AACAAACACCCCCTTAGTACTC 57.638 45.455 0.00 0.00 0.00 2.59
2525 2821 1.411246 GTCCCTTGAAACAAACACCCC 59.589 52.381 0.00 0.00 0.00 4.95
2527 2823 4.465632 AAAGTCCCTTGAAACAAACACC 57.534 40.909 0.00 0.00 0.00 4.16
2528 2824 5.121611 CCAAAAAGTCCCTTGAAACAAACAC 59.878 40.000 0.00 0.00 0.00 3.32
2529 2825 5.221742 ACCAAAAAGTCCCTTGAAACAAACA 60.222 36.000 0.00 0.00 0.00 2.83
2530 2826 5.121611 CACCAAAAAGTCCCTTGAAACAAAC 59.878 40.000 0.00 0.00 0.00 2.93
2532 2828 4.284746 ACACCAAAAAGTCCCTTGAAACAA 59.715 37.500 0.00 0.00 0.00 2.83
2534 2830 4.465632 ACACCAAAAAGTCCCTTGAAAC 57.534 40.909 0.00 0.00 0.00 2.78
2535 2831 4.098807 GCTACACCAAAAAGTCCCTTGAAA 59.901 41.667 0.00 0.00 0.00 2.69
2536 2832 3.634910 GCTACACCAAAAAGTCCCTTGAA 59.365 43.478 0.00 0.00 0.00 2.69
2537 2833 3.219281 GCTACACCAAAAAGTCCCTTGA 58.781 45.455 0.00 0.00 0.00 3.02
2538 2834 2.031157 CGCTACACCAAAAAGTCCCTTG 60.031 50.000 0.00 0.00 0.00 3.61
2540 2836 1.418637 TCGCTACACCAAAAAGTCCCT 59.581 47.619 0.00 0.00 0.00 4.20
2541 2837 1.534163 GTCGCTACACCAAAAAGTCCC 59.466 52.381 0.00 0.00 0.00 4.46
2542 2838 2.490991 AGTCGCTACACCAAAAAGTCC 58.509 47.619 0.00 0.00 0.00 3.85
2543 2839 4.553323 TCTAGTCGCTACACCAAAAAGTC 58.447 43.478 0.00 0.00 0.00 3.01
2544 2840 4.595762 TCTAGTCGCTACACCAAAAAGT 57.404 40.909 0.00 0.00 0.00 2.66
2546 2842 6.316890 ACTTTTTCTAGTCGCTACACCAAAAA 59.683 34.615 0.00 0.00 0.00 1.94
2548 2844 5.362263 ACTTTTTCTAGTCGCTACACCAAA 58.638 37.500 0.00 0.00 0.00 3.28
2549 2845 4.952460 ACTTTTTCTAGTCGCTACACCAA 58.048 39.130 0.00 0.00 0.00 3.67
2550 2846 4.595762 ACTTTTTCTAGTCGCTACACCA 57.404 40.909 0.00 0.00 0.00 4.17
2552 2848 6.766452 AGAAACTTTTTCTAGTCGCTACAC 57.234 37.500 0.00 0.00 0.00 2.90
2554 2850 9.794653 CTAAAAGAAACTTTTTCTAGTCGCTAC 57.205 33.333 13.33 0.00 32.79 3.58
2555 2851 8.985805 CCTAAAAGAAACTTTTTCTAGTCGCTA 58.014 33.333 13.33 0.00 32.79 4.26
2557 2853 7.041576 TCCCTAAAAGAAACTTTTTCTAGTCGC 60.042 37.037 13.33 0.00 32.79 5.19
2559 2855 9.339850 AGTCCCTAAAAGAAACTTTTTCTAGTC 57.660 33.333 13.33 3.59 32.79 2.59
2576 2872 9.743581 CCCATAAAGTAACTTTTAGTCCCTAAA 57.256 33.333 0.00 0.00 35.21 1.85
2577 2873 9.114938 TCCCATAAAGTAACTTTTAGTCCCTAA 57.885 33.333 0.00 0.00 35.21 2.69
2578 2874 8.542926 GTCCCATAAAGTAACTTTTAGTCCCTA 58.457 37.037 0.00 0.00 35.21 3.53
2579 2875 7.239143 AGTCCCATAAAGTAACTTTTAGTCCCT 59.761 37.037 0.00 0.00 35.21 4.20
2581 2877 9.948964 TTAGTCCCATAAAGTAACTTTTAGTCC 57.051 33.333 0.00 0.00 35.21 3.85
2592 2888 9.886132 GTCTTCTTCATTTAGTCCCATAAAGTA 57.114 33.333 0.00 0.00 0.00 2.24
2593 2889 8.606830 AGTCTTCTTCATTTAGTCCCATAAAGT 58.393 33.333 0.00 0.00 0.00 2.66
2594 2890 9.103861 GAGTCTTCTTCATTTAGTCCCATAAAG 57.896 37.037 0.00 0.00 0.00 1.85
2595 2891 8.826765 AGAGTCTTCTTCATTTAGTCCCATAAA 58.173 33.333 0.00 0.00 0.00 1.40
2596 2892 8.380742 AGAGTCTTCTTCATTTAGTCCCATAA 57.619 34.615 0.00 0.00 0.00 1.90
2597 2893 7.619698 TGAGAGTCTTCTTCATTTAGTCCCATA 59.380 37.037 0.00 0.00 32.53 2.74
2599 2895 5.780282 TGAGAGTCTTCTTCATTTAGTCCCA 59.220 40.000 0.00 0.00 32.53 4.37
2600 2896 6.287589 TGAGAGTCTTCTTCATTTAGTCCC 57.712 41.667 0.00 0.00 32.53 4.46
2601 2897 6.816140 CCTTGAGAGTCTTCTTCATTTAGTCC 59.184 42.308 0.00 0.00 32.53 3.85
2603 2899 7.546250 TCCTTGAGAGTCTTCTTCATTTAGT 57.454 36.000 0.00 0.00 32.53 2.24
2619 2915 3.716872 AGTCCCAAAAAGACTCCTTGAGA 59.283 43.478 0.00 0.00 40.61 3.27
2620 2916 4.092116 AGTCCCAAAAAGACTCCTTGAG 57.908 45.455 0.00 0.00 40.61 3.02
2621 2917 4.519906 AAGTCCCAAAAAGACTCCTTGA 57.480 40.909 0.00 0.00 43.77 3.02
2623 2919 4.405680 CCAAAAGTCCCAAAAAGACTCCTT 59.594 41.667 0.00 0.00 43.77 3.36
2624 2920 3.960755 CCAAAAGTCCCAAAAAGACTCCT 59.039 43.478 0.00 0.00 43.77 3.69
2625 2921 3.069586 CCCAAAAGTCCCAAAAAGACTCC 59.930 47.826 0.00 0.00 43.77 3.85
2626 2922 3.069586 CCCCAAAAGTCCCAAAAAGACTC 59.930 47.826 0.00 0.00 43.77 3.36
2627 2923 3.038280 CCCCAAAAGTCCCAAAAAGACT 58.962 45.455 0.00 0.00 46.50 3.24
2628 2924 3.035363 TCCCCAAAAGTCCCAAAAAGAC 58.965 45.455 0.00 0.00 34.31 3.01
2629 2925 3.035363 GTCCCCAAAAGTCCCAAAAAGA 58.965 45.455 0.00 0.00 0.00 2.52
2630 2926 3.038280 AGTCCCCAAAAGTCCCAAAAAG 58.962 45.455 0.00 0.00 0.00 2.27
2632 2928 2.858787 AGTCCCCAAAAGTCCCAAAA 57.141 45.000 0.00 0.00 0.00 2.44
2633 2929 2.858787 AAGTCCCCAAAAGTCCCAAA 57.141 45.000 0.00 0.00 0.00 3.28
2634 2930 2.858787 AAAGTCCCCAAAAGTCCCAA 57.141 45.000 0.00 0.00 0.00 4.12
2635 2931 2.673258 GAAAAGTCCCCAAAAGTCCCA 58.327 47.619 0.00 0.00 0.00 4.37
2636 2932 1.968493 GGAAAAGTCCCCAAAAGTCCC 59.032 52.381 0.00 0.00 38.08 4.46
2637 2933 2.673258 TGGAAAAGTCCCCAAAAGTCC 58.327 47.619 0.00 0.00 44.23 3.85
2638 2934 3.449377 TGTTGGAAAAGTCCCCAAAAGTC 59.551 43.478 0.00 0.00 44.23 3.01
2640 2936 4.479786 TTGTTGGAAAAGTCCCCAAAAG 57.520 40.909 0.00 0.00 44.23 2.27
2641 2937 4.775236 CATTGTTGGAAAAGTCCCCAAAA 58.225 39.130 0.00 0.00 44.23 2.44
2642 2938 3.432890 GCATTGTTGGAAAAGTCCCCAAA 60.433 43.478 0.00 0.00 44.23 3.28
2645 2941 1.001974 GGCATTGTTGGAAAAGTCCCC 59.998 52.381 0.00 0.00 44.23 4.81
2649 2945 1.970640 GAGGGGCATTGTTGGAAAAGT 59.029 47.619 0.00 0.00 0.00 2.66
2650 2946 1.276138 GGAGGGGCATTGTTGGAAAAG 59.724 52.381 0.00 0.00 0.00 2.27
2651 2947 1.347062 GGAGGGGCATTGTTGGAAAA 58.653 50.000 0.00 0.00 0.00 2.29
2652 2948 0.544120 GGGAGGGGCATTGTTGGAAA 60.544 55.000 0.00 0.00 0.00 3.13
2653 2949 1.078347 GGGAGGGGCATTGTTGGAA 59.922 57.895 0.00 0.00 0.00 3.53
2654 2950 1.856873 AGGGAGGGGCATTGTTGGA 60.857 57.895 0.00 0.00 0.00 3.53
2655 2951 1.380380 GAGGGAGGGGCATTGTTGG 60.380 63.158 0.00 0.00 0.00 3.77
2656 2952 1.380380 GGAGGGAGGGGCATTGTTG 60.380 63.158 0.00 0.00 0.00 3.33
2657 2953 1.224003 ATGGAGGGAGGGGCATTGTT 61.224 55.000 0.00 0.00 0.00 2.83
2659 2955 1.152368 GATGGAGGGAGGGGCATTG 59.848 63.158 0.00 0.00 0.00 2.82
2663 2959 2.087461 AATGGATGGAGGGAGGGGC 61.087 63.158 0.00 0.00 0.00 5.80
2664 2960 1.849116 CAATGGATGGAGGGAGGGG 59.151 63.158 0.00 0.00 0.00 4.79
2685 2981 3.697439 AACATCATGGGGGCGTCCG 62.697 63.158 0.00 0.00 36.01 4.79
2686 2982 2.120909 CAACATCATGGGGGCGTCC 61.121 63.158 0.00 0.00 0.00 4.79
2688 2984 0.541764 AAACAACATCATGGGGGCGT 60.542 50.000 0.00 0.00 0.00 5.68
2689 2985 0.108709 CAAACAACATCATGGGGGCG 60.109 55.000 0.00 0.00 0.00 6.13
2690 2986 0.249955 CCAAACAACATCATGGGGGC 59.750 55.000 0.00 0.00 0.00 5.80
2691 2987 1.643310 ACCAAACAACATCATGGGGG 58.357 50.000 0.00 0.00 37.26 5.40
2692 2988 2.368221 ACAACCAAACAACATCATGGGG 59.632 45.455 0.00 0.00 37.26 4.96
2693 2989 3.749665 ACAACCAAACAACATCATGGG 57.250 42.857 0.00 0.00 37.26 4.00
2694 2990 7.727331 AAATAACAACCAAACAACATCATGG 57.273 32.000 0.00 0.00 38.91 3.66
2696 2992 9.612066 AGAAAAATAACAACCAAACAACATCAT 57.388 25.926 0.00 0.00 0.00 2.45
2697 2993 8.877779 CAGAAAAATAACAACCAAACAACATCA 58.122 29.630 0.00 0.00 0.00 3.07
2698 2994 8.878769 ACAGAAAAATAACAACCAAACAACATC 58.121 29.630 0.00 0.00 0.00 3.06
2699 2995 8.785329 ACAGAAAAATAACAACCAAACAACAT 57.215 26.923 0.00 0.00 0.00 2.71
2700 2996 9.877178 ATACAGAAAAATAACAACCAAACAACA 57.123 25.926 0.00 0.00 0.00 3.33
2707 3003 9.675464 CCCTAGTATACAGAAAAATAACAACCA 57.325 33.333 5.50 0.00 0.00 3.67
2709 3005 9.676861 ACCCCTAGTATACAGAAAAATAACAAC 57.323 33.333 5.50 0.00 0.00 3.32
2715 3011 9.847224 CATGTTACCCCTAGTATACAGAAAAAT 57.153 33.333 5.50 0.00 30.65 1.82
2716 3012 9.049050 TCATGTTACCCCTAGTATACAGAAAAA 57.951 33.333 5.50 0.00 30.65 1.94
2717 3013 8.612486 TCATGTTACCCCTAGTATACAGAAAA 57.388 34.615 5.50 0.00 30.65 2.29
2718 3014 8.792830 ATCATGTTACCCCTAGTATACAGAAA 57.207 34.615 5.50 0.00 30.65 2.52
2721 3327 7.776618 TGATCATGTTACCCCTAGTATACAG 57.223 40.000 5.50 0.84 30.65 2.74
2731 3337 8.706322 AGGTTATTAAATGATCATGTTACCCC 57.294 34.615 9.46 4.83 0.00 4.95
2732 3338 8.793592 GGAGGTTATTAAATGATCATGTTACCC 58.206 37.037 9.46 4.21 0.00 3.69
2733 3339 9.349713 TGGAGGTTATTAAATGATCATGTTACC 57.650 33.333 9.46 10.89 0.00 2.85
2736 3342 8.863086 CCATGGAGGTTATTAAATGATCATGTT 58.137 33.333 9.46 8.42 0.00 2.71
2755 3361 2.043227 GTCCTTAGTCCCTCCATGGAG 58.957 57.143 31.69 31.69 41.63 3.86
2757 3363 2.182516 AGTCCTTAGTCCCTCCATGG 57.817 55.000 4.97 4.97 0.00 3.66
2760 3366 5.160386 ACTAAAAAGTCCTTAGTCCCTCCA 58.840 41.667 0.00 0.00 35.16 3.86
2761 3367 5.732633 GACTAAAAAGTCCTTAGTCCCTCC 58.267 45.833 10.34 0.00 44.97 4.30
2767 3373 9.761504 GTTTACAGAGACTAAAAAGTCCTTAGT 57.238 33.333 2.00 0.00 41.28 2.24
2768 3374 9.760077 TGTTTACAGAGACTAAAAAGTCCTTAG 57.240 33.333 2.00 0.00 39.50 2.18
2770 3376 9.457436 TTTGTTTACAGAGACTAAAAAGTCCTT 57.543 29.630 2.00 0.00 39.50 3.36
2771 3377 8.890718 GTTTGTTTACAGAGACTAAAAAGTCCT 58.109 33.333 2.00 0.00 39.50 3.85
2772 3378 8.671028 TGTTTGTTTACAGAGACTAAAAAGTCC 58.329 33.333 2.00 0.00 39.50 3.85
2773 3379 9.704098 CTGTTTGTTTACAGAGACTAAAAAGTC 57.296 33.333 0.00 0.00 46.72 3.01
2774 3380 8.674607 CCTGTTTGTTTACAGAGACTAAAAAGT 58.325 33.333 5.39 0.00 46.72 2.66
2775 3381 8.129211 CCCTGTTTGTTTACAGAGACTAAAAAG 58.871 37.037 5.39 0.00 46.72 2.27
2776 3382 7.830201 TCCCTGTTTGTTTACAGAGACTAAAAA 59.170 33.333 5.39 0.00 46.72 1.94
2777 3383 7.340256 TCCCTGTTTGTTTACAGAGACTAAAA 58.660 34.615 5.39 0.00 46.72 1.52
2778 3384 6.891388 TCCCTGTTTGTTTACAGAGACTAAA 58.109 36.000 5.39 0.00 46.72 1.85
2779 3385 6.488769 TCCCTGTTTGTTTACAGAGACTAA 57.511 37.500 5.39 0.00 46.72 2.24
2780 3386 6.463897 CCTTCCCTGTTTGTTTACAGAGACTA 60.464 42.308 5.39 0.00 46.72 2.59
2781 3387 5.367945 TTCCCTGTTTGTTTACAGAGACT 57.632 39.130 5.39 0.00 46.72 3.24
2783 3389 4.410883 TCCTTCCCTGTTTGTTTACAGAGA 59.589 41.667 5.39 0.00 46.72 3.10
2784 3390 4.515567 GTCCTTCCCTGTTTGTTTACAGAG 59.484 45.833 5.39 0.00 46.72 3.35
2785 3391 4.165372 AGTCCTTCCCTGTTTGTTTACAGA 59.835 41.667 5.39 0.00 46.72 3.41
2787 3393 4.513406 AGTCCTTCCCTGTTTGTTTACA 57.487 40.909 0.00 0.00 0.00 2.41
2788 3394 5.847111 AAAGTCCTTCCCTGTTTGTTTAC 57.153 39.130 0.00 0.00 0.00 2.01
2789 3395 6.860790 AAAAAGTCCTTCCCTGTTTGTTTA 57.139 33.333 0.00 0.00 0.00 2.01
2791 3397 5.362717 CCTAAAAAGTCCTTCCCTGTTTGTT 59.637 40.000 0.00 0.00 0.00 2.83
2792 3398 4.893524 CCTAAAAAGTCCTTCCCTGTTTGT 59.106 41.667 0.00 0.00 0.00 2.83
2793 3399 4.280929 CCCTAAAAAGTCCTTCCCTGTTTG 59.719 45.833 0.00 0.00 0.00 2.93
2794 3400 4.169264 TCCCTAAAAAGTCCTTCCCTGTTT 59.831 41.667 0.00 0.00 0.00 2.83
2799 3405 5.437946 CATAGTCCCTAAAAAGTCCTTCCC 58.562 45.833 0.00 0.00 0.00 3.97
2800 3406 5.191124 TCCATAGTCCCTAAAAAGTCCTTCC 59.809 44.000 0.00 0.00 0.00 3.46
2801 3407 6.070136 AGTCCATAGTCCCTAAAAAGTCCTTC 60.070 42.308 0.00 0.00 0.00 3.46
2802 3408 5.791141 AGTCCATAGTCCCTAAAAAGTCCTT 59.209 40.000 0.00 0.00 0.00 3.36
2806 3412 9.516546 CTAAAAAGTCCATAGTCCCTAAAAAGT 57.483 33.333 0.00 0.00 0.00 2.66
2807 3413 9.516546 ACTAAAAAGTCCATAGTCCCTAAAAAG 57.483 33.333 0.00 0.00 0.00 2.27
2808 3414 9.871175 AACTAAAAAGTCCATAGTCCCTAAAAA 57.129 29.630 0.00 0.00 0.00 1.94
2809 3415 9.292195 CAACTAAAAAGTCCATAGTCCCTAAAA 57.708 33.333 0.00 0.00 0.00 1.52
2811 3417 7.399634 CCAACTAAAAAGTCCATAGTCCCTAA 58.600 38.462 0.00 0.00 0.00 2.69
2814 3420 4.948004 CCCAACTAAAAAGTCCATAGTCCC 59.052 45.833 0.00 0.00 0.00 4.46
2815 3421 5.646793 GTCCCAACTAAAAAGTCCATAGTCC 59.353 44.000 0.00 0.00 0.00 3.85
2816 3422 6.473758 AGTCCCAACTAAAAAGTCCATAGTC 58.526 40.000 0.00 0.00 32.59 2.59
2819 3425 7.801893 TCTAGTCCCAACTAAAAAGTCCATA 57.198 36.000 0.00 0.00 37.53 2.74
2820 3426 6.697641 TCTAGTCCCAACTAAAAAGTCCAT 57.302 37.500 0.00 0.00 37.53 3.41
2821 3427 6.503560 TTCTAGTCCCAACTAAAAAGTCCA 57.496 37.500 0.00 0.00 37.53 4.02
2822 3428 7.812690 TTTTCTAGTCCCAACTAAAAAGTCC 57.187 36.000 0.00 0.00 37.53 3.85
2824 3430 8.818622 ACTTTTTCTAGTCCCAACTAAAAAGT 57.181 30.769 17.77 17.77 46.78 2.66
2829 3435 9.346005 CCTAAAACTTTTTCTAGTCCCAACTAA 57.654 33.333 0.00 0.00 37.53 2.24
2831 3437 7.501559 GTCCTAAAACTTTTTCTAGTCCCAACT 59.498 37.037 0.00 0.00 39.66 3.16
2832 3438 7.501559 AGTCCTAAAACTTTTTCTAGTCCCAAC 59.498 37.037 0.00 0.00 0.00 3.77
2833 3439 7.580007 AGTCCTAAAACTTTTTCTAGTCCCAA 58.420 34.615 0.00 0.00 0.00 4.12
2834 3440 7.145474 AGTCCTAAAACTTTTTCTAGTCCCA 57.855 36.000 0.00 0.00 0.00 4.37
2835 3441 9.736414 ATAAGTCCTAAAACTTTTTCTAGTCCC 57.264 33.333 0.00 0.00 40.01 4.46
2841 3447 9.416284 TGGTTCATAAGTCCTAAAACTTTTTCT 57.584 29.630 0.00 0.00 40.01 2.52
2844 3450 9.811995 GTTTGGTTCATAAGTCCTAAAACTTTT 57.188 29.630 0.00 0.00 40.01 2.27
2846 3452 8.528044 TGTTTGGTTCATAAGTCCTAAAACTT 57.472 30.769 0.00 0.00 42.10 2.66
2847 3453 8.528044 TTGTTTGGTTCATAAGTCCTAAAACT 57.472 30.769 0.00 0.00 0.00 2.66
2848 3454 7.865889 CCTTGTTTGGTTCATAAGTCCTAAAAC 59.134 37.037 0.00 0.00 0.00 2.43
2849 3455 7.470841 GCCTTGTTTGGTTCATAAGTCCTAAAA 60.471 37.037 0.00 0.00 0.00 1.52
2850 3456 6.015772 GCCTTGTTTGGTTCATAAGTCCTAAA 60.016 38.462 0.00 0.00 0.00 1.85
2851 3457 5.475564 GCCTTGTTTGGTTCATAAGTCCTAA 59.524 40.000 0.00 0.00 0.00 2.69
2852 3458 5.007682 GCCTTGTTTGGTTCATAAGTCCTA 58.992 41.667 0.00 0.00 0.00 2.94
2853 3459 3.826729 GCCTTGTTTGGTTCATAAGTCCT 59.173 43.478 0.00 0.00 0.00 3.85
2854 3460 3.056821 GGCCTTGTTTGGTTCATAAGTCC 60.057 47.826 0.00 0.00 0.00 3.85
2855 3461 3.826729 AGGCCTTGTTTGGTTCATAAGTC 59.173 43.478 0.00 0.00 0.00 3.01
2856 3462 3.844640 AGGCCTTGTTTGGTTCATAAGT 58.155 40.909 0.00 0.00 0.00 2.24
2857 3463 5.710099 TCTTAGGCCTTGTTTGGTTCATAAG 59.290 40.000 12.58 3.30 0.00 1.73
2858 3464 5.475564 GTCTTAGGCCTTGTTTGGTTCATAA 59.524 40.000 12.58 0.00 0.00 1.90
2860 3466 3.826729 GTCTTAGGCCTTGTTTGGTTCAT 59.173 43.478 12.58 0.00 0.00 2.57
2862 3468 2.557056 GGTCTTAGGCCTTGTTTGGTTC 59.443 50.000 12.58 0.00 0.00 3.62
2863 3469 2.594131 GGTCTTAGGCCTTGTTTGGTT 58.406 47.619 12.58 0.00 0.00 3.67
2864 3470 1.203013 GGGTCTTAGGCCTTGTTTGGT 60.203 52.381 12.58 0.00 0.00 3.67
2865 3471 1.075536 AGGGTCTTAGGCCTTGTTTGG 59.924 52.381 12.58 0.00 0.00 3.28
2866 3472 2.162681 CAGGGTCTTAGGCCTTGTTTG 58.837 52.381 12.58 0.00 0.00 2.93
2867 3473 1.547901 GCAGGGTCTTAGGCCTTGTTT 60.548 52.381 12.58 0.00 35.77 2.83
2868 3474 0.038310 GCAGGGTCTTAGGCCTTGTT 59.962 55.000 12.58 0.00 35.77 2.83
2870 3476 0.393537 CTGCAGGGTCTTAGGCCTTG 60.394 60.000 12.58 10.81 36.34 3.61
2871 3477 1.566298 CCTGCAGGGTCTTAGGCCTT 61.566 60.000 26.14 0.00 0.00 4.35
2872 3478 1.997874 CCTGCAGGGTCTTAGGCCT 60.998 63.158 26.14 11.78 0.00 5.19
2873 3479 2.592308 CCTGCAGGGTCTTAGGCC 59.408 66.667 26.14 0.00 0.00 5.19
2882 3519 3.307059 GGTAATACATAGAGCCTGCAGGG 60.307 52.174 33.46 18.09 35.18 4.45
2895 3542 9.120538 CAAGCAGGTAATAACAAGGTAATACAT 57.879 33.333 0.00 0.00 0.00 2.29
2901 3548 5.013287 TCCACAAGCAGGTAATAACAAGGTA 59.987 40.000 0.00 0.00 0.00 3.08
2903 3550 4.331968 TCCACAAGCAGGTAATAACAAGG 58.668 43.478 0.00 0.00 0.00 3.61
2939 3586 2.159517 CGCCACTCTCCAGCATTAAAAC 60.160 50.000 0.00 0.00 0.00 2.43
3013 3662 1.609580 GGGTGGTGACGCAACTATTGA 60.610 52.381 0.00 0.00 44.70 2.57
3020 3677 4.980805 GCTCGGGTGGTGACGCAA 62.981 66.667 0.00 0.00 44.70 4.85
3032 3689 0.179073 ATCGGTTTGGAGATGCTCGG 60.179 55.000 0.00 0.00 0.00 4.63
3034 3691 2.315925 TCATCGGTTTGGAGATGCTC 57.684 50.000 0.97 0.00 42.76 4.26
3035 3692 2.092753 ACATCATCGGTTTGGAGATGCT 60.093 45.455 0.00 0.00 42.76 3.79
3036 3693 2.292267 ACATCATCGGTTTGGAGATGC 58.708 47.619 0.00 0.00 42.76 3.91
3037 3694 6.094048 ACTTTTACATCATCGGTTTGGAGATG 59.906 38.462 0.00 0.00 43.99 2.90
3038 3695 6.180472 ACTTTTACATCATCGGTTTGGAGAT 58.820 36.000 0.00 0.00 0.00 2.75
3039 3696 5.556915 ACTTTTACATCATCGGTTTGGAGA 58.443 37.500 0.00 0.00 0.00 3.71
3040 3697 5.880054 ACTTTTACATCATCGGTTTGGAG 57.120 39.130 0.00 0.00 0.00 3.86
3041 3698 5.765677 TCAACTTTTACATCATCGGTTTGGA 59.234 36.000 0.00 0.00 0.00 3.53
3042 3699 6.007936 TCAACTTTTACATCATCGGTTTGG 57.992 37.500 0.00 0.00 0.00 3.28
3043 3700 6.033831 GCATCAACTTTTACATCATCGGTTTG 59.966 38.462 0.00 0.00 0.00 2.93
3044 3701 6.071952 AGCATCAACTTTTACATCATCGGTTT 60.072 34.615 0.00 0.00 0.00 3.27
3045 3702 5.415701 AGCATCAACTTTTACATCATCGGTT 59.584 36.000 0.00 0.00 0.00 4.44
3069 3726 9.295825 TCTCCTACTGCAAAATTCAATTTTAGA 57.704 29.630 7.80 2.65 40.27 2.10
3079 3736 5.013599 ACCTTCTCTCTCCTACTGCAAAATT 59.986 40.000 0.00 0.00 0.00 1.82
3085 3742 4.545208 AAAACCTTCTCTCTCCTACTGC 57.455 45.455 0.00 0.00 0.00 4.40
3088 3745 4.565861 CCCCAAAAACCTTCTCTCTCCTAC 60.566 50.000 0.00 0.00 0.00 3.18
3102 3759 2.145536 CTTTGCTGATGCCCCAAAAAC 58.854 47.619 0.00 0.00 38.71 2.43
3103 3760 1.767681 ACTTTGCTGATGCCCCAAAAA 59.232 42.857 0.00 0.00 38.71 1.94
3117 3774 3.162831 GTTGTTGCAGCAAAAACTTTGC 58.837 40.909 27.65 14.73 45.22 3.68
3132 3789 4.984161 CCAAATTCTAAGGCACTGTTGTTG 59.016 41.667 0.00 0.00 40.86 3.33
3137 3794 4.280929 GGTTTCCAAATTCTAAGGCACTGT 59.719 41.667 0.00 0.00 40.86 3.55
3140 3797 4.864704 TGGTTTCCAAATTCTAAGGCAC 57.135 40.909 0.00 0.00 0.00 5.01
3158 3833 7.233348 ACTGTTGGATCTTATGTTTCAATTGGT 59.767 33.333 5.42 0.00 0.00 3.67
3179 3854 1.621072 CCTCCCTGCCTCTCTACTGTT 60.621 57.143 0.00 0.00 0.00 3.16
3182 3857 0.032615 CACCTCCCTGCCTCTCTACT 60.033 60.000 0.00 0.00 0.00 2.57
3185 3860 1.895886 ATCCACCTCCCTGCCTCTCT 61.896 60.000 0.00 0.00 0.00 3.10
3194 3869 0.827368 GACAGTCAGATCCACCTCCC 59.173 60.000 0.00 0.00 0.00 4.30
3200 3875 1.657751 CTCGGCGACAGTCAGATCCA 61.658 60.000 4.99 0.00 0.00 3.41
3246 3921 3.660111 GGGTGCTCAGCGCGTTTT 61.660 61.111 8.43 0.00 43.27 2.43
3256 3931 6.555152 AACTTTGGTTAATAGCTGGGTGCTC 61.555 44.000 0.00 0.00 41.80 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.