Multiple sequence alignment - TraesCS2D01G363800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G363800 chr2D 100.000 6791 0 0 1 6791 469731789 469738579 0.000000e+00 12541.0
1 TraesCS2D01G363800 chr2A 95.005 3083 109 25 516 3580 611099114 611102169 0.000000e+00 4798.0
2 TraesCS2D01G363800 chr2A 93.200 1956 65 21 3580 5511 611102537 611104448 0.000000e+00 2813.0
3 TraesCS2D01G363800 chr2A 95.719 654 21 3 5436 6083 611104526 611105178 0.000000e+00 1046.0
4 TraesCS2D01G363800 chr2A 80.054 747 60 47 6089 6790 611105211 611105913 7.970000e-129 472.0
5 TraesCS2D01G363800 chr2B 92.003 3101 159 25 517 3580 548381589 548384637 0.000000e+00 4270.0
6 TraesCS2D01G363800 chr2B 95.204 2523 67 22 3590 6083 548384997 548387494 0.000000e+00 3940.0
7 TraesCS2D01G363800 chr2B 91.291 333 18 6 6089 6419 548387527 548387850 1.740000e-120 444.0
8 TraesCS2D01G363800 chr2B 82.587 201 19 9 6594 6791 548388755 548388942 5.450000e-36 163.0
9 TraesCS2D01G363800 chr2B 87.500 72 7 2 1954 2024 548382932 548383002 1.570000e-11 82.4
10 TraesCS2D01G363800 chr4D 76.654 257 45 11 86 336 484940456 484940703 1.990000e-25 128.0
11 TraesCS2D01G363800 chr1B 73.846 260 56 9 40 292 623377195 623376941 7.250000e-15 93.5
12 TraesCS2D01G363800 chr6D 100.000 45 0 0 5535 5579 147149350 147149394 4.360000e-12 84.2
13 TraesCS2D01G363800 chr6A 100.000 45 0 0 5535 5579 200254532 200254488 4.360000e-12 84.2
14 TraesCS2D01G363800 chr6B 97.778 45 1 0 5535 5579 258013283 258013239 2.030000e-10 78.7
15 TraesCS2D01G363800 chr3A 97.778 45 1 0 5535 5579 119479872 119479828 2.030000e-10 78.7
16 TraesCS2D01G363800 chr3A 100.000 28 0 0 3636 3663 196183700 196183727 1.200000e-02 52.8
17 TraesCS2D01G363800 chr7D 90.909 55 3 1 5524 5578 135361475 135361527 9.450000e-09 73.1
18 TraesCS2D01G363800 chr7A 93.617 47 2 1 5535 5580 254882878 254882832 1.220000e-07 69.4
19 TraesCS2D01G363800 chr1A 88.462 52 6 0 5535 5586 306682985 306682934 5.690000e-06 63.9
20 TraesCS2D01G363800 chr3D 89.796 49 4 1 3616 3663 164309006 164309054 2.050000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G363800 chr2D 469731789 469738579 6790 False 12541.00 12541 100.0000 1 6791 1 chr2D.!!$F1 6790
1 TraesCS2D01G363800 chr2A 611099114 611105913 6799 False 2282.25 4798 90.9945 516 6790 4 chr2A.!!$F1 6274
2 TraesCS2D01G363800 chr2B 548381589 548388942 7353 False 1779.88 4270 89.7170 517 6791 5 chr2B.!!$F1 6274

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.038343 GGTTCCATGCGCACAAATGT 60.038 50.000 14.90 0.00 0.00 2.71 F
508 509 0.093026 CGATCTTCCGCGTCAAACAC 59.907 55.000 4.92 0.00 0.00 3.32 F
510 511 0.250124 ATCTTCCGCGTCAAACACCA 60.250 50.000 4.92 0.00 0.00 4.17 F
1093 1098 0.387622 CCGAAACACGCCGAGTAGAA 60.388 55.000 0.00 0.00 41.07 2.10 F
1097 1102 0.390124 AACACGCCGAGTAGAAACCA 59.610 50.000 0.00 0.00 0.00 3.67 F
1133 1159 0.533308 TTTTTGCCTGACGCGTAGGT 60.533 50.000 25.39 1.89 42.08 3.08 F
1643 1674 0.615331 TCAGGATCTGGTGCTCCAAC 59.385 55.000 9.14 3.70 43.81 3.77 F
2879 2912 0.618458 TCCAACTGTAGCCATGGTCC 59.382 55.000 14.67 1.93 34.50 4.46 F
3425 3461 1.300697 GAACTTGGGCACTCGTCGT 60.301 57.895 0.00 0.00 0.00 4.34 F
3989 4417 0.731417 CATGCAAGCTAGCTGTCCAC 59.269 55.000 20.16 6.88 34.99 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1535 1565 0.391661 CTGCCTAGCGCTCCAAAAGA 60.392 55.000 16.34 0.00 38.78 2.52 R
2064 2095 2.286713 TGAAACATCCGAAAGCACAACG 60.287 45.455 0.00 0.00 0.00 4.10 R
2307 2340 3.007940 CCAGTAACCAACAGAGTGATGGA 59.992 47.826 9.95 0.00 42.23 3.41 R
2731 2764 6.271566 GTTACCACCAAAATTACGACCAAAA 58.728 36.000 0.00 0.00 0.00 2.44 R
3107 3143 5.885230 CAAGAGATGCATCCTGTTTAACA 57.115 39.130 23.06 0.00 0.00 2.41 R
3328 3364 2.238646 CCTGTCATAGCCCTGTTAACCA 59.761 50.000 2.48 0.00 0.00 3.67 R
3749 4173 4.843220 ATTCAAACAAGAGCTTCCACAG 57.157 40.909 0.00 0.00 0.00 3.66 R
3973 4397 1.023513 CAGGTGGACAGCTAGCTTGC 61.024 60.000 16.46 12.54 37.39 4.01 R
5241 5671 4.586884 TCTCCTCAACATGTACTAGACGT 58.413 43.478 0.00 0.00 0.00 4.34 R
6083 6697 0.168128 GTTACACGCCACTGCAATCC 59.832 55.000 0.00 0.00 37.32 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.887626 TTCTTTTAAGGGTAACATCACACC 57.112 37.500 0.00 0.00 39.74 4.16
27 28 4.998672 TCTTTTAAGGGTAACATCACACCG 59.001 41.667 0.00 0.00 35.53 4.94
28 29 4.620589 TTTAAGGGTAACATCACACCGA 57.379 40.909 0.00 0.00 35.53 4.69
29 30 4.620589 TTAAGGGTAACATCACACCGAA 57.379 40.909 0.00 0.00 35.53 4.30
30 31 3.495434 AAGGGTAACATCACACCGAAA 57.505 42.857 0.00 0.00 35.53 3.46
31 32 3.495434 AGGGTAACATCACACCGAAAA 57.505 42.857 0.00 0.00 35.53 2.29
32 33 4.028993 AGGGTAACATCACACCGAAAAT 57.971 40.909 0.00 0.00 35.53 1.82
33 34 5.168647 AGGGTAACATCACACCGAAAATA 57.831 39.130 0.00 0.00 35.53 1.40
34 35 4.939439 AGGGTAACATCACACCGAAAATAC 59.061 41.667 0.00 0.00 35.53 1.89
35 36 4.696402 GGGTAACATCACACCGAAAATACA 59.304 41.667 0.00 0.00 35.53 2.29
36 37 5.181622 GGGTAACATCACACCGAAAATACAA 59.818 40.000 0.00 0.00 35.53 2.41
37 38 6.311723 GGTAACATCACACCGAAAATACAAG 58.688 40.000 0.00 0.00 0.00 3.16
38 39 5.371115 AACATCACACCGAAAATACAAGG 57.629 39.130 0.00 0.00 0.00 3.61
39 40 3.756434 ACATCACACCGAAAATACAAGGG 59.244 43.478 0.00 0.00 0.00 3.95
40 41 3.495434 TCACACCGAAAATACAAGGGT 57.505 42.857 0.00 0.00 0.00 4.34
47 48 6.693315 ACCGAAAATACAAGGGTGAATATG 57.307 37.500 0.00 0.00 0.00 1.78
48 49 5.592688 ACCGAAAATACAAGGGTGAATATGG 59.407 40.000 0.00 0.00 0.00 2.74
49 50 5.592688 CCGAAAATACAAGGGTGAATATGGT 59.407 40.000 0.00 0.00 0.00 3.55
50 51 6.096282 CCGAAAATACAAGGGTGAATATGGTT 59.904 38.462 0.00 0.00 0.00 3.67
51 52 7.193595 CGAAAATACAAGGGTGAATATGGTTC 58.806 38.462 0.00 0.00 0.00 3.62
52 53 7.418337 AAAATACAAGGGTGAATATGGTTCC 57.582 36.000 0.00 0.00 0.00 3.62
53 54 5.725551 ATACAAGGGTGAATATGGTTCCA 57.274 39.130 0.00 0.00 0.00 3.53
54 55 4.608170 ACAAGGGTGAATATGGTTCCAT 57.392 40.909 9.37 9.37 0.00 3.41
55 56 4.280819 ACAAGGGTGAATATGGTTCCATG 58.719 43.478 13.86 0.00 0.00 3.66
56 57 2.949447 AGGGTGAATATGGTTCCATGC 58.051 47.619 13.86 4.83 0.00 4.06
57 58 1.608590 GGGTGAATATGGTTCCATGCG 59.391 52.381 13.86 0.00 0.00 4.73
58 59 1.001378 GGTGAATATGGTTCCATGCGC 60.001 52.381 13.86 0.00 0.00 6.09
59 60 1.675483 GTGAATATGGTTCCATGCGCA 59.325 47.619 14.96 14.96 0.00 6.09
60 61 1.675483 TGAATATGGTTCCATGCGCAC 59.325 47.619 14.90 0.00 0.00 5.34
61 62 1.675483 GAATATGGTTCCATGCGCACA 59.325 47.619 14.90 5.14 0.00 4.57
62 63 1.761449 ATATGGTTCCATGCGCACAA 58.239 45.000 14.90 2.56 0.00 3.33
63 64 1.539157 TATGGTTCCATGCGCACAAA 58.461 45.000 14.90 4.22 0.00 2.83
64 65 0.896923 ATGGTTCCATGCGCACAAAT 59.103 45.000 14.90 0.00 0.00 2.32
65 66 0.038435 TGGTTCCATGCGCACAAATG 60.038 50.000 14.90 7.07 0.00 2.32
66 67 0.038343 GGTTCCATGCGCACAAATGT 60.038 50.000 14.90 0.00 0.00 2.71
124 125 9.639563 ATCTTTAAAAATGTGAAATTTTGGGGT 57.360 25.926 0.00 0.00 32.23 4.95
129 130 8.986929 AAAAATGTGAAATTTTGGGGTATCAA 57.013 26.923 0.00 0.00 32.23 2.57
130 131 7.977789 AAATGTGAAATTTTGGGGTATCAAC 57.022 32.000 0.00 0.00 0.00 3.18
131 132 5.476091 TGTGAAATTTTGGGGTATCAACC 57.524 39.130 0.00 0.00 45.97 3.77
132 133 5.151454 TGTGAAATTTTGGGGTATCAACCT 58.849 37.500 0.00 0.00 45.95 3.50
133 134 5.604650 TGTGAAATTTTGGGGTATCAACCTT 59.395 36.000 0.00 0.00 45.95 3.50
134 135 5.931724 GTGAAATTTTGGGGTATCAACCTTG 59.068 40.000 0.00 0.00 45.95 3.61
135 136 4.551702 AATTTTGGGGTATCAACCTTGC 57.448 40.909 0.00 0.00 45.95 4.01
136 137 2.990740 TTTGGGGTATCAACCTTGCT 57.009 45.000 0.00 0.00 45.95 3.91
137 138 2.507407 TTGGGGTATCAACCTTGCTC 57.493 50.000 0.00 0.00 45.95 4.26
138 139 0.251916 TGGGGTATCAACCTTGCTCG 59.748 55.000 0.00 0.00 45.95 5.03
139 140 0.539986 GGGGTATCAACCTTGCTCGA 59.460 55.000 0.00 0.00 45.95 4.04
140 141 1.653151 GGGTATCAACCTTGCTCGAC 58.347 55.000 0.00 0.00 45.95 4.20
141 142 1.653151 GGTATCAACCTTGCTCGACC 58.347 55.000 0.00 0.00 43.08 4.79
142 143 1.066430 GGTATCAACCTTGCTCGACCA 60.066 52.381 0.00 0.00 43.08 4.02
143 144 2.420129 GGTATCAACCTTGCTCGACCAT 60.420 50.000 0.00 0.00 43.08 3.55
144 145 2.496899 ATCAACCTTGCTCGACCATT 57.503 45.000 0.00 0.00 0.00 3.16
145 146 1.522668 TCAACCTTGCTCGACCATTG 58.477 50.000 0.00 0.00 0.00 2.82
146 147 1.202758 TCAACCTTGCTCGACCATTGT 60.203 47.619 0.00 0.00 0.00 2.71
147 148 2.037902 TCAACCTTGCTCGACCATTGTA 59.962 45.455 0.00 0.00 0.00 2.41
148 149 2.094762 ACCTTGCTCGACCATTGTAC 57.905 50.000 0.00 0.00 0.00 2.90
149 150 1.623811 ACCTTGCTCGACCATTGTACT 59.376 47.619 0.00 0.00 0.00 2.73
150 151 2.271800 CCTTGCTCGACCATTGTACTC 58.728 52.381 0.00 0.00 0.00 2.59
151 152 2.353704 CCTTGCTCGACCATTGTACTCA 60.354 50.000 0.00 0.00 0.00 3.41
152 153 2.363788 TGCTCGACCATTGTACTCAC 57.636 50.000 0.00 0.00 0.00 3.51
153 154 1.616374 TGCTCGACCATTGTACTCACA 59.384 47.619 0.00 0.00 0.00 3.58
154 155 1.993370 GCTCGACCATTGTACTCACAC 59.007 52.381 0.00 0.00 33.30 3.82
155 156 2.251040 CTCGACCATTGTACTCACACG 58.749 52.381 0.00 0.00 33.30 4.49
156 157 1.610038 TCGACCATTGTACTCACACGT 59.390 47.619 0.00 0.00 33.30 4.49
157 158 1.719246 CGACCATTGTACTCACACGTG 59.281 52.381 15.48 15.48 33.30 4.49
158 159 2.606065 CGACCATTGTACTCACACGTGA 60.606 50.000 25.01 0.00 38.06 4.35
159 160 3.386486 GACCATTGTACTCACACGTGAA 58.614 45.455 25.01 8.94 39.39 3.18
160 161 3.390135 ACCATTGTACTCACACGTGAAG 58.610 45.455 25.01 20.26 39.39 3.02
161 162 3.181469 ACCATTGTACTCACACGTGAAGT 60.181 43.478 25.01 24.52 39.39 3.01
162 163 3.807622 CCATTGTACTCACACGTGAAGTT 59.192 43.478 25.01 11.55 39.39 2.66
163 164 4.272504 CCATTGTACTCACACGTGAAGTTT 59.727 41.667 25.01 6.79 39.39 2.66
164 165 5.464057 CCATTGTACTCACACGTGAAGTTTA 59.536 40.000 25.01 13.41 39.39 2.01
165 166 6.346598 CCATTGTACTCACACGTGAAGTTTAG 60.347 42.308 25.01 11.55 39.39 1.85
166 167 5.252969 TGTACTCACACGTGAAGTTTAGT 57.747 39.130 25.01 16.28 39.39 2.24
167 168 5.038683 TGTACTCACACGTGAAGTTTAGTG 58.961 41.667 25.01 7.41 39.39 2.74
168 169 4.380841 ACTCACACGTGAAGTTTAGTGA 57.619 40.909 25.01 11.67 39.39 3.41
169 170 4.751060 ACTCACACGTGAAGTTTAGTGAA 58.249 39.130 25.01 0.00 39.39 3.18
170 171 4.804139 ACTCACACGTGAAGTTTAGTGAAG 59.196 41.667 25.01 8.98 39.39 3.02
171 172 4.116961 TCACACGTGAAGTTTAGTGAAGG 58.883 43.478 25.01 0.00 36.53 3.46
172 173 4.116961 CACACGTGAAGTTTAGTGAAGGA 58.883 43.478 25.01 0.00 37.95 3.36
173 174 4.569162 CACACGTGAAGTTTAGTGAAGGAA 59.431 41.667 25.01 0.00 37.95 3.36
174 175 5.236478 CACACGTGAAGTTTAGTGAAGGAAT 59.764 40.000 25.01 0.00 37.95 3.01
175 176 5.236478 ACACGTGAAGTTTAGTGAAGGAATG 59.764 40.000 25.01 0.00 37.95 2.67
176 177 5.465390 CACGTGAAGTTTAGTGAAGGAATGA 59.535 40.000 10.90 0.00 36.79 2.57
177 178 5.465724 ACGTGAAGTTTAGTGAAGGAATGAC 59.534 40.000 0.00 0.00 0.00 3.06
178 179 5.465390 CGTGAAGTTTAGTGAAGGAATGACA 59.535 40.000 0.00 0.00 0.00 3.58
179 180 6.564125 CGTGAAGTTTAGTGAAGGAATGACAC 60.564 42.308 0.00 0.00 35.15 3.67
180 181 5.763204 TGAAGTTTAGTGAAGGAATGACACC 59.237 40.000 0.00 0.00 35.47 4.16
181 182 4.652822 AGTTTAGTGAAGGAATGACACCC 58.347 43.478 0.00 0.00 35.47 4.61
182 183 3.328382 TTAGTGAAGGAATGACACCCG 57.672 47.619 0.00 0.00 35.47 5.28
183 184 0.324943 AGTGAAGGAATGACACCCGG 59.675 55.000 0.00 0.00 35.47 5.73
184 185 0.676782 GTGAAGGAATGACACCCGGG 60.677 60.000 22.25 22.25 0.00 5.73
185 186 1.077716 GAAGGAATGACACCCGGGG 60.078 63.158 27.92 16.65 0.00 5.73
186 187 1.848886 GAAGGAATGACACCCGGGGT 61.849 60.000 27.92 20.14 35.62 4.95
187 188 0.548197 AAGGAATGACACCCGGGGTA 60.548 55.000 27.92 3.51 32.11 3.69
188 189 0.548197 AGGAATGACACCCGGGGTAA 60.548 55.000 27.92 13.71 32.11 2.85
189 190 0.549469 GGAATGACACCCGGGGTAAT 59.451 55.000 27.92 15.51 32.11 1.89
190 191 1.476291 GGAATGACACCCGGGGTAATC 60.476 57.143 27.92 19.32 32.11 1.75
191 192 0.549469 AATGACACCCGGGGTAATCC 59.451 55.000 27.92 8.75 32.11 3.01
192 193 0.622154 ATGACACCCGGGGTAATCCA 60.622 55.000 27.92 14.13 37.22 3.41
193 194 1.222661 GACACCCGGGGTAATCCAC 59.777 63.158 27.92 3.05 37.22 4.02
194 195 1.539372 ACACCCGGGGTAATCCACA 60.539 57.895 27.92 0.00 36.84 4.17
195 196 1.223487 CACCCGGGGTAATCCACAG 59.777 63.158 27.92 0.00 36.84 3.66
196 197 1.229723 ACCCGGGGTAATCCACAGT 60.230 57.895 27.92 0.00 36.84 3.55
197 198 1.223487 CCCGGGGTAATCCACAGTG 59.777 63.158 14.71 0.00 36.84 3.66
198 199 1.268992 CCCGGGGTAATCCACAGTGA 61.269 60.000 14.71 0.00 36.84 3.41
199 200 0.616371 CCGGGGTAATCCACAGTGAA 59.384 55.000 0.62 0.00 36.84 3.18
200 201 1.406887 CCGGGGTAATCCACAGTGAAG 60.407 57.143 0.62 0.00 36.84 3.02
201 202 1.553248 CGGGGTAATCCACAGTGAAGA 59.447 52.381 0.62 0.00 36.84 2.87
202 203 2.027561 CGGGGTAATCCACAGTGAAGAA 60.028 50.000 0.62 0.00 36.84 2.52
203 204 3.558321 CGGGGTAATCCACAGTGAAGAAA 60.558 47.826 0.62 0.00 36.84 2.52
204 205 3.756963 GGGGTAATCCACAGTGAAGAAAC 59.243 47.826 0.62 0.00 37.04 2.78
205 206 3.435671 GGGTAATCCACAGTGAAGAAACG 59.564 47.826 0.62 0.00 35.00 3.60
206 207 3.435671 GGTAATCCACAGTGAAGAAACGG 59.564 47.826 0.62 0.00 0.00 4.44
207 208 2.930826 ATCCACAGTGAAGAAACGGT 57.069 45.000 0.62 0.00 0.00 4.83
208 209 4.345859 AATCCACAGTGAAGAAACGGTA 57.654 40.909 0.62 0.00 0.00 4.02
209 210 4.553330 ATCCACAGTGAAGAAACGGTAT 57.447 40.909 0.62 0.00 0.00 2.73
210 211 3.659786 TCCACAGTGAAGAAACGGTATG 58.340 45.455 0.62 0.00 0.00 2.39
211 212 3.322541 TCCACAGTGAAGAAACGGTATGA 59.677 43.478 0.62 0.00 0.00 2.15
212 213 4.020573 TCCACAGTGAAGAAACGGTATGAT 60.021 41.667 0.62 0.00 0.00 2.45
213 214 4.330074 CCACAGTGAAGAAACGGTATGATC 59.670 45.833 0.62 0.00 0.00 2.92
214 215 5.171476 CACAGTGAAGAAACGGTATGATCT 58.829 41.667 0.00 0.00 0.00 2.75
215 216 5.639506 CACAGTGAAGAAACGGTATGATCTT 59.360 40.000 0.00 0.00 34.96 2.40
216 217 6.811665 CACAGTGAAGAAACGGTATGATCTTA 59.188 38.462 0.00 0.00 32.54 2.10
217 218 6.812160 ACAGTGAAGAAACGGTATGATCTTAC 59.188 38.462 9.70 9.70 32.54 2.34
218 219 7.036220 CAGTGAAGAAACGGTATGATCTTACT 58.964 38.462 15.98 0.00 32.54 2.24
219 220 8.188799 CAGTGAAGAAACGGTATGATCTTACTA 58.811 37.037 15.98 0.00 32.54 1.82
220 221 8.915036 AGTGAAGAAACGGTATGATCTTACTAT 58.085 33.333 15.98 4.68 32.54 2.12
221 222 9.530633 GTGAAGAAACGGTATGATCTTACTATT 57.469 33.333 15.98 9.37 32.54 1.73
222 223 9.745880 TGAAGAAACGGTATGATCTTACTATTC 57.254 33.333 15.98 15.75 32.54 1.75
223 224 9.194271 GAAGAAACGGTATGATCTTACTATTCC 57.806 37.037 15.98 1.63 32.54 3.01
224 225 8.480133 AGAAACGGTATGATCTTACTATTCCT 57.520 34.615 15.98 4.37 0.00 3.36
225 226 8.925338 AGAAACGGTATGATCTTACTATTCCTT 58.075 33.333 15.98 4.61 0.00 3.36
226 227 9.194271 GAAACGGTATGATCTTACTATTCCTTC 57.806 37.037 15.98 8.64 0.00 3.46
227 228 7.834881 ACGGTATGATCTTACTATTCCTTCA 57.165 36.000 15.98 0.00 0.00 3.02
228 229 8.246430 ACGGTATGATCTTACTATTCCTTCAA 57.754 34.615 15.98 0.00 0.00 2.69
229 230 8.701895 ACGGTATGATCTTACTATTCCTTCAAA 58.298 33.333 15.98 0.00 0.00 2.69
230 231 8.979574 CGGTATGATCTTACTATTCCTTCAAAC 58.020 37.037 15.98 0.00 0.00 2.93
231 232 9.832445 GGTATGATCTTACTATTCCTTCAAACA 57.168 33.333 15.98 0.00 0.00 2.83
235 236 9.739276 TGATCTTACTATTCCTTCAAACAATGT 57.261 29.630 0.00 0.00 0.00 2.71
242 243 9.883142 ACTATTCCTTCAAACAATGTTTTTGAA 57.117 25.926 8.85 10.36 46.03 2.69
269 270 8.956533 ATAACTTTTACTTTGGCATTGTTGTT 57.043 26.923 0.00 0.00 0.00 2.83
270 271 6.902224 ACTTTTACTTTGGCATTGTTGTTC 57.098 33.333 0.00 0.00 0.00 3.18
271 272 6.402222 ACTTTTACTTTGGCATTGTTGTTCA 58.598 32.000 0.00 0.00 0.00 3.18
272 273 6.876257 ACTTTTACTTTGGCATTGTTGTTCAA 59.124 30.769 0.00 0.00 40.53 2.69
273 274 7.389053 ACTTTTACTTTGGCATTGTTGTTCAAA 59.611 29.630 0.00 0.00 39.62 2.69
274 275 7.672983 TTTACTTTGGCATTGTTGTTCAAAA 57.327 28.000 0.00 0.00 39.62 2.44
275 276 7.856145 TTACTTTGGCATTGTTGTTCAAAAT 57.144 28.000 0.00 0.00 39.62 1.82
276 277 8.948631 TTACTTTGGCATTGTTGTTCAAAATA 57.051 26.923 0.00 0.00 39.62 1.40
277 278 7.245419 ACTTTGGCATTGTTGTTCAAAATAC 57.755 32.000 0.00 0.00 39.62 1.89
278 279 6.259829 ACTTTGGCATTGTTGTTCAAAATACC 59.740 34.615 0.00 0.00 39.62 2.73
279 280 5.282055 TGGCATTGTTGTTCAAAATACCA 57.718 34.783 0.00 7.57 39.62 3.25
280 281 5.862845 TGGCATTGTTGTTCAAAATACCAT 58.137 33.333 0.00 0.00 39.62 3.55
281 282 5.699915 TGGCATTGTTGTTCAAAATACCATG 59.300 36.000 0.00 0.00 39.62 3.66
282 283 5.931146 GGCATTGTTGTTCAAAATACCATGA 59.069 36.000 0.00 0.00 39.62 3.07
283 284 6.426328 GGCATTGTTGTTCAAAATACCATGAA 59.574 34.615 0.00 0.00 39.62 2.57
284 285 7.119553 GGCATTGTTGTTCAAAATACCATGAAT 59.880 33.333 0.00 0.00 39.62 2.57
285 286 7.958567 GCATTGTTGTTCAAAATACCATGAATG 59.041 33.333 0.00 0.00 39.62 2.67
286 287 8.991026 CATTGTTGTTCAAAATACCATGAATGT 58.009 29.630 0.00 0.00 39.62 2.71
287 288 8.586570 TTGTTGTTCAAAATACCATGAATGTC 57.413 30.769 0.00 0.00 37.82 3.06
288 289 7.720442 TGTTGTTCAAAATACCATGAATGTCA 58.280 30.769 0.00 0.00 37.82 3.58
289 290 8.366401 TGTTGTTCAAAATACCATGAATGTCAT 58.634 29.630 0.00 0.00 37.82 3.06
290 291 9.206870 GTTGTTCAAAATACCATGAATGTCATT 57.793 29.630 0.00 0.00 37.82 2.57
291 292 9.775854 TTGTTCAAAATACCATGAATGTCATTT 57.224 25.926 0.00 0.00 37.82 2.32
292 293 9.421806 TGTTCAAAATACCATGAATGTCATTTC 57.578 29.630 0.00 0.00 37.82 2.17
293 294 9.643693 GTTCAAAATACCATGAATGTCATTTCT 57.356 29.630 0.00 0.00 37.82 2.52
295 296 9.859427 TCAAAATACCATGAATGTCATTTCTTC 57.141 29.630 0.00 0.00 34.28 2.87
296 297 9.642327 CAAAATACCATGAATGTCATTTCTTCA 57.358 29.630 0.00 0.00 34.28 3.02
302 303 9.643693 ACCATGAATGTCATTTCTTCATTAAAC 57.356 29.630 0.00 0.00 37.48 2.01
303 304 9.090692 CCATGAATGTCATTTCTTCATTAAACC 57.909 33.333 0.00 0.00 37.48 3.27
304 305 9.865321 CATGAATGTCATTTCTTCATTAAACCT 57.135 29.630 0.00 0.00 37.48 3.50
306 307 9.076781 TGAATGTCATTTCTTCATTAAACCTCA 57.923 29.630 0.00 0.00 32.90 3.86
310 311 9.177608 TGTCATTTCTTCATTAAACCTCATAGG 57.822 33.333 0.00 0.00 42.49 2.57
334 335 8.874156 AGGTGAGTATATCAATGTATCATGTGT 58.126 33.333 0.00 0.00 40.43 3.72
400 401 8.990163 TTGTTTTCTGAATTTAGTACTCCCTT 57.010 30.769 0.00 0.00 0.00 3.95
401 402 8.617290 TGTTTTCTGAATTTAGTACTCCCTTC 57.383 34.615 0.00 1.52 0.00 3.46
402 403 8.215050 TGTTTTCTGAATTTAGTACTCCCTTCA 58.785 33.333 0.00 6.23 0.00 3.02
403 404 9.063615 GTTTTCTGAATTTAGTACTCCCTTCAA 57.936 33.333 0.00 0.00 0.00 2.69
404 405 9.807921 TTTTCTGAATTTAGTACTCCCTTCAAT 57.192 29.630 0.00 0.00 0.00 2.57
405 406 9.449719 TTTCTGAATTTAGTACTCCCTTCAATC 57.550 33.333 0.00 0.00 0.00 2.67
406 407 7.565680 TCTGAATTTAGTACTCCCTTCAATCC 58.434 38.462 0.00 0.00 0.00 3.01
407 408 7.182026 TCTGAATTTAGTACTCCCTTCAATCCA 59.818 37.037 0.00 0.00 0.00 3.41
408 409 7.695055 TGAATTTAGTACTCCCTTCAATCCAA 58.305 34.615 0.00 0.00 0.00 3.53
409 410 8.167392 TGAATTTAGTACTCCCTTCAATCCAAA 58.833 33.333 0.00 0.00 0.00 3.28
410 411 8.950007 AATTTAGTACTCCCTTCAATCCAAAA 57.050 30.769 0.00 0.00 0.00 2.44
411 412 7.996098 TTTAGTACTCCCTTCAATCCAAAAG 57.004 36.000 0.00 0.00 0.00 2.27
412 413 5.843019 AGTACTCCCTTCAATCCAAAAGA 57.157 39.130 0.00 0.00 0.00 2.52
413 414 6.200878 AGTACTCCCTTCAATCCAAAAGAA 57.799 37.500 0.00 0.00 0.00 2.52
414 415 6.241645 AGTACTCCCTTCAATCCAAAAGAAG 58.758 40.000 0.00 0.00 38.72 2.85
415 416 5.066913 ACTCCCTTCAATCCAAAAGAAGT 57.933 39.130 0.00 0.00 37.62 3.01
416 417 4.829492 ACTCCCTTCAATCCAAAAGAAGTG 59.171 41.667 0.00 0.00 37.62 3.16
417 418 4.803452 TCCCTTCAATCCAAAAGAAGTGT 58.197 39.130 0.00 0.00 37.62 3.55
418 419 4.827284 TCCCTTCAATCCAAAAGAAGTGTC 59.173 41.667 0.00 0.00 37.62 3.67
419 420 4.320494 CCCTTCAATCCAAAAGAAGTGTCG 60.320 45.833 0.00 0.00 37.62 4.35
420 421 4.275936 CCTTCAATCCAAAAGAAGTGTCGT 59.724 41.667 0.00 0.00 37.62 4.34
421 422 4.811555 TCAATCCAAAAGAAGTGTCGTG 57.188 40.909 0.00 0.00 0.00 4.35
422 423 3.563808 TCAATCCAAAAGAAGTGTCGTGG 59.436 43.478 0.00 0.00 0.00 4.94
423 424 2.702592 TCCAAAAGAAGTGTCGTGGT 57.297 45.000 0.00 0.00 0.00 4.16
424 425 2.993937 TCCAAAAGAAGTGTCGTGGTT 58.006 42.857 0.00 0.00 0.00 3.67
425 426 3.349022 TCCAAAAGAAGTGTCGTGGTTT 58.651 40.909 0.00 0.00 0.00 3.27
426 427 3.759618 TCCAAAAGAAGTGTCGTGGTTTT 59.240 39.130 0.00 0.00 0.00 2.43
427 428 4.218852 TCCAAAAGAAGTGTCGTGGTTTTT 59.781 37.500 0.00 0.00 0.00 1.94
451 452 6.985188 TTGAACTAAGAATTTGATCGGAGG 57.015 37.500 0.00 0.00 0.00 4.30
452 453 5.428253 TGAACTAAGAATTTGATCGGAGGG 58.572 41.667 0.00 0.00 0.00 4.30
453 454 5.188948 TGAACTAAGAATTTGATCGGAGGGA 59.811 40.000 0.00 0.00 0.00 4.20
454 455 5.283457 ACTAAGAATTTGATCGGAGGGAG 57.717 43.478 0.00 0.00 0.00 4.30
455 456 4.717280 ACTAAGAATTTGATCGGAGGGAGT 59.283 41.667 0.00 0.00 0.00 3.85
456 457 5.897824 ACTAAGAATTTGATCGGAGGGAGTA 59.102 40.000 0.00 0.00 0.00 2.59
457 458 4.946478 AGAATTTGATCGGAGGGAGTAG 57.054 45.455 0.00 0.00 0.00 2.57
458 459 4.290942 AGAATTTGATCGGAGGGAGTAGT 58.709 43.478 0.00 0.00 0.00 2.73
459 460 5.455872 AGAATTTGATCGGAGGGAGTAGTA 58.544 41.667 0.00 0.00 0.00 1.82
460 461 6.078664 AGAATTTGATCGGAGGGAGTAGTAT 58.921 40.000 0.00 0.00 0.00 2.12
461 462 6.555360 AGAATTTGATCGGAGGGAGTAGTATT 59.445 38.462 0.00 0.00 0.00 1.89
462 463 6.749036 ATTTGATCGGAGGGAGTAGTATTT 57.251 37.500 0.00 0.00 0.00 1.40
463 464 7.850935 ATTTGATCGGAGGGAGTAGTATTTA 57.149 36.000 0.00 0.00 0.00 1.40
464 465 6.896021 TTGATCGGAGGGAGTAGTATTTAG 57.104 41.667 0.00 0.00 0.00 1.85
465 466 5.950023 TGATCGGAGGGAGTAGTATTTAGT 58.050 41.667 0.00 0.00 0.00 2.24
466 467 7.083062 TGATCGGAGGGAGTAGTATTTAGTA 57.917 40.000 0.00 0.00 0.00 1.82
467 468 7.696981 TGATCGGAGGGAGTAGTATTTAGTAT 58.303 38.462 0.00 0.00 0.00 2.12
468 469 8.168725 TGATCGGAGGGAGTAGTATTTAGTATT 58.831 37.037 0.00 0.00 0.00 1.89
469 470 7.992754 TCGGAGGGAGTAGTATTTAGTATTC 57.007 40.000 0.00 0.00 0.00 1.75
470 471 6.944862 TCGGAGGGAGTAGTATTTAGTATTCC 59.055 42.308 5.75 5.75 37.31 3.01
471 472 6.718454 CGGAGGGAGTAGTATTTAGTATTCCA 59.282 42.308 13.12 0.00 38.84 3.53
472 473 7.232127 CGGAGGGAGTAGTATTTAGTATTCCAA 59.768 40.741 13.12 0.00 38.84 3.53
473 474 8.931568 GGAGGGAGTAGTATTTAGTATTCCAAA 58.068 37.037 13.12 0.00 38.84 3.28
485 486 8.859517 TTTAGTATTCCAAAAAGGTTTTCGTG 57.140 30.769 0.00 0.00 39.02 4.35
486 487 5.838529 AGTATTCCAAAAAGGTTTTCGTGG 58.161 37.500 1.03 1.03 39.02 4.94
487 488 5.595133 AGTATTCCAAAAAGGTTTTCGTGGA 59.405 36.000 5.00 5.00 36.04 4.02
488 489 4.803098 TTCCAAAAAGGTTTTCGTGGAA 57.197 36.364 13.71 13.71 41.32 3.53
489 490 4.112716 TCCAAAAAGGTTTTCGTGGAAC 57.887 40.909 6.25 0.00 35.33 3.62
500 501 3.384927 GTGGAACGATCTTCCGCG 58.615 61.111 16.54 0.00 41.43 6.46
501 502 1.445582 GTGGAACGATCTTCCGCGT 60.446 57.895 16.54 0.00 41.43 6.01
502 503 1.153901 TGGAACGATCTTCCGCGTC 60.154 57.895 4.92 0.00 41.43 5.19
503 504 1.153901 GGAACGATCTTCCGCGTCA 60.154 57.895 4.92 0.00 40.23 4.35
504 505 0.734942 GGAACGATCTTCCGCGTCAA 60.735 55.000 4.92 0.00 40.23 3.18
505 506 1.065358 GAACGATCTTCCGCGTCAAA 58.935 50.000 4.92 0.00 40.23 2.69
506 507 0.788391 AACGATCTTCCGCGTCAAAC 59.212 50.000 4.92 0.00 40.23 2.93
507 508 0.319211 ACGATCTTCCGCGTCAAACA 60.319 50.000 4.92 0.00 35.59 2.83
508 509 0.093026 CGATCTTCCGCGTCAAACAC 59.907 55.000 4.92 0.00 0.00 3.32
509 510 0.442699 GATCTTCCGCGTCAAACACC 59.557 55.000 4.92 0.00 0.00 4.16
510 511 0.250124 ATCTTCCGCGTCAAACACCA 60.250 50.000 4.92 0.00 0.00 4.17
511 512 0.878523 TCTTCCGCGTCAAACACCAG 60.879 55.000 4.92 0.00 0.00 4.00
512 513 0.878523 CTTCCGCGTCAAACACCAGA 60.879 55.000 4.92 0.00 0.00 3.86
513 514 1.155424 TTCCGCGTCAAACACCAGAC 61.155 55.000 4.92 0.00 0.00 3.51
514 515 2.604174 CCGCGTCAAACACCAGACC 61.604 63.158 4.92 0.00 0.00 3.85
666 668 1.568025 GCGACTTGACCAACCGAAC 59.432 57.895 0.00 0.00 0.00 3.95
715 717 1.654023 GAAACGGGATGGCGAAAGGG 61.654 60.000 0.00 0.00 0.00 3.95
904 908 4.778143 CGCAAACCCTAGCCGCCT 62.778 66.667 0.00 0.00 0.00 5.52
973 977 4.835891 CCGTCCCCTAGCCGAGGT 62.836 72.222 1.77 0.00 45.03 3.85
1093 1098 0.387622 CCGAAACACGCCGAGTAGAA 60.388 55.000 0.00 0.00 41.07 2.10
1097 1102 0.390124 AACACGCCGAGTAGAAACCA 59.610 50.000 0.00 0.00 0.00 3.67
1133 1159 0.533308 TTTTTGCCTGACGCGTAGGT 60.533 50.000 25.39 1.89 42.08 3.08
1327 1354 3.620488 TGAACCCAATCTAGCCATGTTC 58.380 45.455 0.00 0.00 33.15 3.18
1387 1414 1.515519 CATCGCCATGCTGTGTTGC 60.516 57.895 0.00 0.00 0.00 4.17
1422 1449 3.004171 GGGTCGTGTGTAATGCATGTTA 58.996 45.455 0.00 0.00 0.00 2.41
1430 1457 5.512788 GTGTGTAATGCATGTTAATGTCAGC 59.487 40.000 0.00 0.00 36.08 4.26
1480 1507 1.742761 CATCCGACTGAATGTGCCTT 58.257 50.000 0.00 0.00 0.00 4.35
1489 1516 5.580691 CGACTGAATGTGCCTTATGTCTTAA 59.419 40.000 0.00 0.00 0.00 1.85
1535 1565 3.418995 ACATCTTCTGTTGCTTGCTGAT 58.581 40.909 0.00 0.00 32.90 2.90
1544 1574 3.005050 TGTTGCTTGCTGATCTTTTGGAG 59.995 43.478 0.00 0.00 0.00 3.86
1597 1628 8.410673 AAGACGATCTATTAGGAGAAATGCTA 57.589 34.615 0.00 0.00 0.00 3.49
1610 1641 8.773033 AGGAGAAATGCTAATACCAAATTGAT 57.227 30.769 0.00 0.00 0.00 2.57
1643 1674 0.615331 TCAGGATCTGGTGCTCCAAC 59.385 55.000 9.14 3.70 43.81 3.77
1653 1684 2.152016 GGTGCTCCAACTGTTTCCTAC 58.848 52.381 0.00 0.00 0.00 3.18
1664 1695 2.878406 CTGTTTCCTACTGGTGTTGGTG 59.122 50.000 0.00 0.00 39.53 4.17
1700 1731 4.067972 TGTAGAACCTCTTGTGTTGTCC 57.932 45.455 0.00 0.00 0.00 4.02
1713 1744 4.499183 TGTGTTGTCCATTTGGTTTTCAC 58.501 39.130 0.00 4.26 36.34 3.18
1716 1747 4.709397 TGTTGTCCATTTGGTTTTCACTCT 59.291 37.500 0.00 0.00 36.34 3.24
1787 1818 7.770366 TCGAGGGTATACAGAGCAAAATATA 57.230 36.000 5.01 0.00 0.00 0.86
1825 1856 7.816640 TGATCTTGTATGTTAAGTTGCTTTCC 58.183 34.615 0.00 0.00 0.00 3.13
1970 2001 8.934023 TCTTTGGATTACTGGTTATCTTTGTT 57.066 30.769 0.87 0.00 0.00 2.83
2032 2063 6.037610 CAGTTCATAAGGTCTCTGGTTAATGC 59.962 42.308 0.00 0.00 0.00 3.56
2039 2070 4.472833 AGGTCTCTGGTTAATGCTGATTCT 59.527 41.667 0.00 0.00 0.00 2.40
2064 2095 9.487790 CTCTGAGGATTATAATTCTTTGGTCTC 57.512 37.037 7.72 0.00 0.00 3.36
2202 2235 6.298361 TGAATGTTTCTGATTTCTCTCACCA 58.702 36.000 0.00 0.00 0.00 4.17
2307 2340 1.854939 TCTTGGAATCATGGGCTGGAT 59.145 47.619 0.00 0.00 0.00 3.41
2512 2545 1.571955 AACCAATTTCCCCAGATGGC 58.428 50.000 0.00 0.00 34.45 4.40
2713 2746 5.773176 TGTTTTCCATTTACCTCCTCCTTTC 59.227 40.000 0.00 0.00 0.00 2.62
2731 2764 7.202047 CCTCCTTTCCACTCTAAGTGCTATTAT 60.202 40.741 1.49 0.00 44.63 1.28
2879 2912 0.618458 TCCAACTGTAGCCATGGTCC 59.382 55.000 14.67 1.93 34.50 4.46
2889 2922 5.514169 TGTAGCCATGGTCCAAATGATAAA 58.486 37.500 14.67 0.00 0.00 1.40
2892 2925 4.964262 AGCCATGGTCCAAATGATAAACAT 59.036 37.500 14.67 0.00 41.45 2.71
3107 3143 1.569548 TCCCTCCCTAGTTCGACAGAT 59.430 52.381 0.00 0.00 0.00 2.90
3328 3364 3.100671 GTCAGGTTATCCACTCCACTCT 58.899 50.000 0.00 0.00 35.89 3.24
3425 3461 1.300697 GAACTTGGGCACTCGTCGT 60.301 57.895 0.00 0.00 0.00 4.34
3700 4124 6.118170 TGAAAATTCTGGAACATTGCCAAAA 58.882 32.000 0.00 0.00 38.20 2.44
3803 4227 7.816995 ACATGCTTTGTCTTCTGTTTGTTTTTA 59.183 29.630 0.00 0.00 30.89 1.52
3946 4370 9.374960 GTATCTTATTGCTCGTTTGATGATTTC 57.625 33.333 0.00 0.00 0.00 2.17
3973 4397 6.405065 CCCTCCACAATCATTGTTTACTCATG 60.405 42.308 0.00 0.00 43.23 3.07
3974 4398 5.953183 TCCACAATCATTGTTTACTCATGC 58.047 37.500 0.00 0.00 43.23 4.06
3975 4399 5.476254 TCCACAATCATTGTTTACTCATGCA 59.524 36.000 0.00 0.00 43.23 3.96
3976 4400 6.015603 TCCACAATCATTGTTTACTCATGCAA 60.016 34.615 0.00 0.00 43.23 4.08
3989 4417 0.731417 CATGCAAGCTAGCTGTCCAC 59.269 55.000 20.16 6.88 34.99 4.02
4089 4517 9.905713 ATGGAAACTTAAATCTAGCATGTTCTA 57.094 29.630 0.00 0.00 0.00 2.10
4232 4660 6.377996 AGCAATATACCTTTGAACTTGCATGA 59.622 34.615 6.60 0.00 39.84 3.07
4766 5194 3.160679 AGGTGACCCTGGATTGAAAAG 57.839 47.619 0.00 0.00 40.58 2.27
4770 5198 4.343814 GGTGACCCTGGATTGAAAAGAAAA 59.656 41.667 0.00 0.00 0.00 2.29
5038 5467 6.204688 CACTTCACCAGACAAGCAAACTATTA 59.795 38.462 0.00 0.00 0.00 0.98
5125 5555 6.343716 TGTTTGATGTCCATAAAATGTGCT 57.656 33.333 0.00 0.00 0.00 4.40
5241 5671 5.371526 GCATCTCCAATAGAGTTGAATGGA 58.628 41.667 5.22 0.00 42.63 3.41
5587 6193 5.859495 ACAGAGGGAGTACTTTCAAAGAAG 58.141 41.667 3.49 0.00 0.00 2.85
5625 6236 8.694540 CCCCTGTATTGTATTTGATCAAAATCA 58.305 33.333 23.91 20.60 39.29 2.57
5811 6422 0.809385 CTCACATTTGCTCTGCTGGG 59.191 55.000 0.00 0.00 0.00 4.45
5840 6451 1.956636 GCATCCCATTTGGTGCTCTCA 60.957 52.381 5.24 0.00 37.83 3.27
5891 6502 1.196808 CAACAAAGCGCGATTACCTGT 59.803 47.619 11.22 8.78 0.00 4.00
6076 6690 5.347635 TCAAAAGTATTCCGATTGTCAGTCG 59.652 40.000 10.55 10.55 38.75 4.18
6083 6697 1.340658 CGATTGTCAGTCGTCAGGTG 58.659 55.000 9.42 0.00 34.56 4.00
6084 6698 1.714794 GATTGTCAGTCGTCAGGTGG 58.285 55.000 0.00 0.00 0.00 4.61
6086 6700 1.338107 TTGTCAGTCGTCAGGTGGAT 58.662 50.000 0.00 0.00 0.00 3.41
6098 6739 2.562912 GTGGATTGCAGTGGCGTG 59.437 61.111 0.00 0.00 45.35 5.34
6136 6777 1.079336 GACCGTACCTTGCAGGGTC 60.079 63.158 25.65 14.68 40.58 4.46
6199 6851 4.047059 CGGCAAAGGCTGTGCTGG 62.047 66.667 27.69 16.93 43.38 4.85
6237 6889 2.283298 CATTAGCACGCCAGACTTCAT 58.717 47.619 0.00 0.00 0.00 2.57
6238 6890 2.010145 TTAGCACGCCAGACTTCATC 57.990 50.000 0.00 0.00 0.00 2.92
6239 6891 0.894835 TAGCACGCCAGACTTCATCA 59.105 50.000 0.00 0.00 0.00 3.07
6242 6894 1.354040 CACGCCAGACTTCATCAGAC 58.646 55.000 0.00 0.00 0.00 3.51
6373 7029 2.133742 ATTGTGCGTTGCTGGTGAGC 62.134 55.000 0.00 0.00 46.44 4.26
6374 7030 2.974698 GTGCGTTGCTGGTGAGCT 60.975 61.111 0.00 0.00 46.39 4.09
6375 7031 2.666190 TGCGTTGCTGGTGAGCTC 60.666 61.111 6.82 6.82 46.39 4.09
6376 7032 2.358003 GCGTTGCTGGTGAGCTCT 60.358 61.111 16.19 0.00 46.39 4.09
6377 7033 2.675056 GCGTTGCTGGTGAGCTCTG 61.675 63.158 16.19 3.91 46.39 3.35
6378 7034 2.031516 CGTTGCTGGTGAGCTCTGG 61.032 63.158 16.19 3.55 46.39 3.86
6379 7035 2.033141 TTGCTGGTGAGCTCTGGC 59.967 61.111 16.19 13.41 46.39 4.85
6431 7114 0.320374 TACGCACCTTCACTTGAGGG 59.680 55.000 5.86 5.86 45.76 4.30
6435 7118 1.623811 GCACCTTCACTTGAGGGAGTA 59.376 52.381 14.00 0.00 43.30 2.59
6440 7126 4.351111 ACCTTCACTTGAGGGAGTATTTGT 59.649 41.667 14.00 0.00 43.30 2.83
6457 7143 6.770785 AGTATTTGTTAGTCTTGAAGTGCCAA 59.229 34.615 0.00 0.00 0.00 4.52
6468 7154 5.362430 TCTTGAAGTGCCAACTTTGGTTAAT 59.638 36.000 9.74 0.00 46.84 1.40
6480 7166 6.555152 AACTTTGGTTAATAGCTGGGTGCTC 61.555 44.000 0.00 0.00 41.80 4.26
6490 7176 3.660111 GGGTGCTCAGCGCGTTTT 61.660 61.111 8.43 0.00 43.27 2.43
6536 7222 1.657751 CTCGGCGACAGTCAGATCCA 61.658 60.000 4.99 0.00 0.00 3.41
6551 7237 1.895886 ATCCACCTCCCTGCCTCTCT 61.896 60.000 0.00 0.00 0.00 3.10
6557 7243 1.621072 CCTCCCTGCCTCTCTACTGTT 60.621 57.143 0.00 0.00 0.00 3.16
6596 7982 4.864704 TGGTTTCCAAATTCTAAGGCAC 57.135 40.909 0.00 0.00 0.00 5.01
6599 7985 4.280929 GGTTTCCAAATTCTAAGGCACTGT 59.719 41.667 0.00 0.00 40.86 3.55
6604 7990 4.984161 CCAAATTCTAAGGCACTGTTGTTG 59.016 41.667 0.00 0.00 40.86 3.33
6619 8005 3.162831 GTTGTTGCAGCAAAAACTTTGC 58.837 40.909 27.65 14.73 45.22 3.68
6634 8020 2.145536 CTTTGCTGATGCCCCAAAAAC 58.854 47.619 0.00 0.00 38.71 2.43
6648 8034 4.565861 CCCCAAAAACCTTCTCTCTCCTAC 60.566 50.000 0.00 0.00 0.00 3.18
6651 8037 4.545208 AAAACCTTCTCTCTCCTACTGC 57.455 45.455 0.00 0.00 0.00 4.40
6657 8043 5.013599 ACCTTCTCTCTCCTACTGCAAAATT 59.986 40.000 0.00 0.00 0.00 1.82
6667 8053 9.295825 TCTCCTACTGCAAAATTCAATTTTAGA 57.704 29.630 7.80 2.65 40.27 2.10
6691 8077 5.415701 AGCATCAACTTTTACATCATCGGTT 59.584 36.000 0.00 0.00 0.00 4.44
6692 8078 6.071952 AGCATCAACTTTTACATCATCGGTTT 60.072 34.615 0.00 0.00 0.00 3.27
6693 8079 6.033831 GCATCAACTTTTACATCATCGGTTTG 59.966 38.462 0.00 0.00 0.00 2.93
6694 8080 6.007936 TCAACTTTTACATCATCGGTTTGG 57.992 37.500 0.00 0.00 0.00 3.28
6695 8081 5.765677 TCAACTTTTACATCATCGGTTTGGA 59.234 36.000 0.00 0.00 0.00 3.53
6696 8082 5.880054 ACTTTTACATCATCGGTTTGGAG 57.120 39.130 0.00 0.00 0.00 3.86
6697 8083 5.556915 ACTTTTACATCATCGGTTTGGAGA 58.443 37.500 0.00 0.00 0.00 3.71
6698 8084 6.180472 ACTTTTACATCATCGGTTTGGAGAT 58.820 36.000 0.00 0.00 0.00 2.75
6699 8085 6.094048 ACTTTTACATCATCGGTTTGGAGATG 59.906 38.462 0.00 0.00 43.99 2.90
6700 8086 2.292267 ACATCATCGGTTTGGAGATGC 58.708 47.619 0.00 0.00 42.76 3.91
6701 8087 2.092753 ACATCATCGGTTTGGAGATGCT 60.093 45.455 0.00 0.00 42.76 3.79
6702 8088 2.315925 TCATCGGTTTGGAGATGCTC 57.684 50.000 0.97 0.00 42.76 4.26
6704 8090 0.179073 ATCGGTTTGGAGATGCTCGG 60.179 55.000 0.00 0.00 0.00 4.63
6716 8102 4.980805 GCTCGGGTGGTGACGCAA 62.981 66.667 0.00 0.00 44.70 4.85
6721 8107 0.672401 CGGGTGGTGACGCAACTATT 60.672 55.000 0.00 0.00 44.70 1.73
6722 8108 0.802494 GGGTGGTGACGCAACTATTG 59.198 55.000 0.00 0.00 44.70 1.90
6724 8110 2.147958 GGTGGTGACGCAACTATTGAA 58.852 47.619 0.00 0.00 44.70 2.69
6725 8111 2.159627 GGTGGTGACGCAACTATTGAAG 59.840 50.000 0.00 0.00 44.70 3.02
6726 8112 2.806244 GTGGTGACGCAACTATTGAAGT 59.194 45.455 0.00 0.00 41.49 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.674607 GGTGTGATGTTACCCTTAAAAGAATAG 58.325 37.037 0.00 0.00 0.00 1.73
1 2 7.334921 CGGTGTGATGTTACCCTTAAAAGAATA 59.665 37.037 0.00 0.00 33.32 1.75
2 3 6.150474 CGGTGTGATGTTACCCTTAAAAGAAT 59.850 38.462 0.00 0.00 33.32 2.40
3 4 5.470777 CGGTGTGATGTTACCCTTAAAAGAA 59.529 40.000 0.00 0.00 33.32 2.52
4 5 4.998672 CGGTGTGATGTTACCCTTAAAAGA 59.001 41.667 0.00 0.00 33.32 2.52
5 6 4.998672 TCGGTGTGATGTTACCCTTAAAAG 59.001 41.667 0.00 0.00 33.32 2.27
6 7 4.970711 TCGGTGTGATGTTACCCTTAAAA 58.029 39.130 0.00 0.00 33.32 1.52
7 8 4.620589 TCGGTGTGATGTTACCCTTAAA 57.379 40.909 0.00 0.00 33.32 1.52
8 9 4.620589 TTCGGTGTGATGTTACCCTTAA 57.379 40.909 0.00 0.00 33.32 1.85
9 10 4.620589 TTTCGGTGTGATGTTACCCTTA 57.379 40.909 0.00 0.00 33.32 2.69
10 11 3.495434 TTTCGGTGTGATGTTACCCTT 57.505 42.857 0.00 0.00 33.32 3.95
11 12 3.495434 TTTTCGGTGTGATGTTACCCT 57.505 42.857 0.00 0.00 33.32 4.34
12 13 4.696402 TGTATTTTCGGTGTGATGTTACCC 59.304 41.667 0.00 0.00 33.32 3.69
13 14 5.866335 TGTATTTTCGGTGTGATGTTACC 57.134 39.130 0.00 0.00 0.00 2.85
14 15 6.311723 CCTTGTATTTTCGGTGTGATGTTAC 58.688 40.000 0.00 0.00 0.00 2.50
15 16 5.413213 CCCTTGTATTTTCGGTGTGATGTTA 59.587 40.000 0.00 0.00 0.00 2.41
16 17 4.217550 CCCTTGTATTTTCGGTGTGATGTT 59.782 41.667 0.00 0.00 0.00 2.71
17 18 3.756434 CCCTTGTATTTTCGGTGTGATGT 59.244 43.478 0.00 0.00 0.00 3.06
18 19 3.756434 ACCCTTGTATTTTCGGTGTGATG 59.244 43.478 0.00 0.00 0.00 3.07
19 20 3.756434 CACCCTTGTATTTTCGGTGTGAT 59.244 43.478 0.00 0.00 39.33 3.06
20 21 3.142951 CACCCTTGTATTTTCGGTGTGA 58.857 45.455 0.00 0.00 39.33 3.58
21 22 3.142951 TCACCCTTGTATTTTCGGTGTG 58.857 45.455 4.58 0.00 43.65 3.82
22 23 3.495434 TCACCCTTGTATTTTCGGTGT 57.505 42.857 4.58 0.00 43.65 4.16
23 24 6.459573 CCATATTCACCCTTGTATTTTCGGTG 60.460 42.308 0.00 0.00 44.40 4.94
24 25 5.592688 CCATATTCACCCTTGTATTTTCGGT 59.407 40.000 0.00 0.00 0.00 4.69
25 26 5.592688 ACCATATTCACCCTTGTATTTTCGG 59.407 40.000 0.00 0.00 0.00 4.30
26 27 6.693315 ACCATATTCACCCTTGTATTTTCG 57.307 37.500 0.00 0.00 0.00 3.46
27 28 7.123547 TGGAACCATATTCACCCTTGTATTTTC 59.876 37.037 0.00 0.00 0.00 2.29
28 29 6.957020 TGGAACCATATTCACCCTTGTATTTT 59.043 34.615 0.00 0.00 0.00 1.82
29 30 6.498538 TGGAACCATATTCACCCTTGTATTT 58.501 36.000 0.00 0.00 0.00 1.40
30 31 6.086011 TGGAACCATATTCACCCTTGTATT 57.914 37.500 0.00 0.00 0.00 1.89
31 32 5.725551 TGGAACCATATTCACCCTTGTAT 57.274 39.130 0.00 0.00 0.00 2.29
32 33 5.445069 CATGGAACCATATTCACCCTTGTA 58.555 41.667 6.00 0.00 34.91 2.41
33 34 4.280819 CATGGAACCATATTCACCCTTGT 58.719 43.478 6.00 0.00 34.91 3.16
34 35 3.068590 GCATGGAACCATATTCACCCTTG 59.931 47.826 6.00 0.00 34.91 3.61
35 36 3.299503 GCATGGAACCATATTCACCCTT 58.700 45.455 6.00 0.00 34.91 3.95
36 37 2.749466 CGCATGGAACCATATTCACCCT 60.749 50.000 6.00 0.00 34.91 4.34
37 38 1.608590 CGCATGGAACCATATTCACCC 59.391 52.381 6.00 0.00 34.91 4.61
38 39 1.001378 GCGCATGGAACCATATTCACC 60.001 52.381 0.30 0.00 34.91 4.02
39 40 1.675483 TGCGCATGGAACCATATTCAC 59.325 47.619 5.66 0.00 34.91 3.18
40 41 1.675483 GTGCGCATGGAACCATATTCA 59.325 47.619 15.91 2.28 34.91 2.57
41 42 1.675483 TGTGCGCATGGAACCATATTC 59.325 47.619 15.91 0.00 34.91 1.75
42 43 1.761449 TGTGCGCATGGAACCATATT 58.239 45.000 15.91 0.00 34.91 1.28
43 44 1.761449 TTGTGCGCATGGAACCATAT 58.239 45.000 15.91 0.00 34.91 1.78
44 45 1.539157 TTTGTGCGCATGGAACCATA 58.461 45.000 15.91 0.00 34.91 2.74
45 46 0.896923 ATTTGTGCGCATGGAACCAT 59.103 45.000 15.91 0.00 37.08 3.55
46 47 0.038435 CATTTGTGCGCATGGAACCA 60.038 50.000 15.91 1.77 0.00 3.67
47 48 0.038343 ACATTTGTGCGCATGGAACC 60.038 50.000 15.91 0.00 0.00 3.62
48 49 1.062258 CACATTTGTGCGCATGGAAC 58.938 50.000 15.91 0.00 39.39 3.62
49 50 0.957362 TCACATTTGTGCGCATGGAA 59.043 45.000 15.91 9.56 45.25 3.53
50 51 0.957362 TTCACATTTGTGCGCATGGA 59.043 45.000 15.91 0.00 45.25 3.41
51 52 1.999048 ATTCACATTTGTGCGCATGG 58.001 45.000 15.91 4.15 45.25 3.66
52 53 2.532723 GCTATTCACATTTGTGCGCATG 59.467 45.455 15.91 10.79 45.25 4.06
53 54 2.164017 TGCTATTCACATTTGTGCGCAT 59.836 40.909 15.91 0.00 45.25 4.73
54 55 1.538950 TGCTATTCACATTTGTGCGCA 59.461 42.857 5.66 5.66 45.25 6.09
55 56 2.261037 TGCTATTCACATTTGTGCGC 57.739 45.000 0.00 0.00 45.25 6.09
56 57 5.345472 TGAATTTGCTATTCACATTTGTGCG 59.655 36.000 5.81 0.00 45.25 5.34
57 58 6.709145 TGAATTTGCTATTCACATTTGTGC 57.291 33.333 5.81 0.00 45.25 4.57
98 99 9.639563 ACCCCAAAATTTCACATTTTTAAAGAT 57.360 25.926 0.00 0.00 0.00 2.40
104 105 8.845227 GTTGATACCCCAAAATTTCACATTTTT 58.155 29.630 0.00 0.00 0.00 1.94
105 106 7.446931 GGTTGATACCCCAAAATTTCACATTTT 59.553 33.333 0.00 0.00 38.60 1.82
106 107 6.939730 GGTTGATACCCCAAAATTTCACATTT 59.060 34.615 0.00 0.00 38.60 2.32
107 108 6.272090 AGGTTGATACCCCAAAATTTCACATT 59.728 34.615 0.00 0.00 46.28 2.71
108 109 5.784906 AGGTTGATACCCCAAAATTTCACAT 59.215 36.000 0.00 0.00 46.28 3.21
109 110 5.151454 AGGTTGATACCCCAAAATTTCACA 58.849 37.500 0.00 0.00 46.28 3.58
110 111 5.738619 AGGTTGATACCCCAAAATTTCAC 57.261 39.130 0.00 0.00 46.28 3.18
111 112 5.512232 GCAAGGTTGATACCCCAAAATTTCA 60.512 40.000 0.00 0.00 46.28 2.69
112 113 4.935205 GCAAGGTTGATACCCCAAAATTTC 59.065 41.667 0.00 0.00 46.28 2.17
113 114 4.597075 AGCAAGGTTGATACCCCAAAATTT 59.403 37.500 0.00 0.00 46.28 1.82
114 115 4.167319 AGCAAGGTTGATACCCCAAAATT 58.833 39.130 0.00 0.00 46.28 1.82
115 116 3.769300 GAGCAAGGTTGATACCCCAAAAT 59.231 43.478 0.00 0.00 46.28 1.82
116 117 3.161866 GAGCAAGGTTGATACCCCAAAA 58.838 45.455 0.00 0.00 46.28 2.44
117 118 2.802719 GAGCAAGGTTGATACCCCAAA 58.197 47.619 0.00 0.00 46.28 3.28
118 119 1.339631 CGAGCAAGGTTGATACCCCAA 60.340 52.381 0.00 0.00 46.28 4.12
119 120 0.251916 CGAGCAAGGTTGATACCCCA 59.748 55.000 0.00 0.00 46.28 4.96
120 121 0.539986 TCGAGCAAGGTTGATACCCC 59.460 55.000 0.00 0.00 46.28 4.95
121 122 1.653151 GTCGAGCAAGGTTGATACCC 58.347 55.000 0.00 0.00 46.28 3.69
122 123 1.066430 TGGTCGAGCAAGGTTGATACC 60.066 52.381 16.20 0.00 45.39 2.73
123 124 2.380084 TGGTCGAGCAAGGTTGATAC 57.620 50.000 16.20 0.00 0.00 2.24
124 125 3.270027 CAATGGTCGAGCAAGGTTGATA 58.730 45.455 22.64 0.00 0.00 2.15
125 126 2.086869 CAATGGTCGAGCAAGGTTGAT 58.913 47.619 22.64 0.00 0.00 2.57
126 127 1.202758 ACAATGGTCGAGCAAGGTTGA 60.203 47.619 27.18 4.00 0.00 3.18
127 128 1.238439 ACAATGGTCGAGCAAGGTTG 58.762 50.000 22.64 22.02 0.00 3.77
128 129 2.038557 AGTACAATGGTCGAGCAAGGTT 59.961 45.455 22.64 8.83 0.00 3.50
129 130 1.623811 AGTACAATGGTCGAGCAAGGT 59.376 47.619 22.64 22.50 0.00 3.50
130 131 2.271800 GAGTACAATGGTCGAGCAAGG 58.728 52.381 22.64 18.07 0.00 3.61
131 132 2.668457 GTGAGTACAATGGTCGAGCAAG 59.332 50.000 22.64 18.73 0.00 4.01
132 133 2.036604 TGTGAGTACAATGGTCGAGCAA 59.963 45.455 22.64 1.34 32.88 3.91
133 134 1.616374 TGTGAGTACAATGGTCGAGCA 59.384 47.619 21.02 21.02 32.88 4.26
134 135 1.993370 GTGTGAGTACAATGGTCGAGC 59.007 52.381 7.89 7.89 38.82 5.03
135 136 2.251040 CGTGTGAGTACAATGGTCGAG 58.749 52.381 0.00 0.00 38.82 4.04
136 137 1.610038 ACGTGTGAGTACAATGGTCGA 59.390 47.619 0.00 0.00 38.82 4.20
137 138 1.719246 CACGTGTGAGTACAATGGTCG 59.281 52.381 7.58 0.00 38.82 4.79
138 139 3.021269 TCACGTGTGAGTACAATGGTC 57.979 47.619 16.51 0.00 38.82 4.02
139 140 3.181469 ACTTCACGTGTGAGTACAATGGT 60.181 43.478 20.34 0.00 41.13 3.55
140 141 3.390135 ACTTCACGTGTGAGTACAATGG 58.610 45.455 20.34 0.00 41.13 3.16
141 142 5.403897 AAACTTCACGTGTGAGTACAATG 57.596 39.130 21.44 4.84 41.13 2.82
142 143 6.200286 CACTAAACTTCACGTGTGAGTACAAT 59.800 38.462 21.44 13.47 41.13 2.71
143 144 5.517411 CACTAAACTTCACGTGTGAGTACAA 59.483 40.000 21.44 12.36 41.13 2.41
144 145 5.038683 CACTAAACTTCACGTGTGAGTACA 58.961 41.667 21.44 13.88 41.13 2.90
145 146 5.276270 TCACTAAACTTCACGTGTGAGTAC 58.724 41.667 21.44 0.00 41.13 2.73
146 147 5.503662 TCACTAAACTTCACGTGTGAGTA 57.496 39.130 21.44 10.67 41.13 2.59
147 148 4.380841 TCACTAAACTTCACGTGTGAGT 57.619 40.909 16.51 17.09 41.13 3.41
148 149 4.209288 CCTTCACTAAACTTCACGTGTGAG 59.791 45.833 16.51 16.45 41.13 3.51
149 150 4.116961 CCTTCACTAAACTTCACGTGTGA 58.883 43.478 16.51 6.28 37.91 3.58
150 151 4.116961 TCCTTCACTAAACTTCACGTGTG 58.883 43.478 16.51 12.19 0.00 3.82
151 152 4.395959 TCCTTCACTAAACTTCACGTGT 57.604 40.909 16.51 0.00 0.00 4.49
152 153 5.465390 TCATTCCTTCACTAAACTTCACGTG 59.535 40.000 9.94 9.94 0.00 4.49
153 154 5.465724 GTCATTCCTTCACTAAACTTCACGT 59.534 40.000 0.00 0.00 0.00 4.49
154 155 5.465390 TGTCATTCCTTCACTAAACTTCACG 59.535 40.000 0.00 0.00 0.00 4.35
155 156 6.293462 GGTGTCATTCCTTCACTAAACTTCAC 60.293 42.308 0.00 0.00 33.30 3.18
156 157 5.763204 GGTGTCATTCCTTCACTAAACTTCA 59.237 40.000 0.00 0.00 33.30 3.02
157 158 5.181433 GGGTGTCATTCCTTCACTAAACTTC 59.819 44.000 0.00 0.00 33.30 3.01
158 159 5.070685 GGGTGTCATTCCTTCACTAAACTT 58.929 41.667 0.00 0.00 33.30 2.66
159 160 4.652822 GGGTGTCATTCCTTCACTAAACT 58.347 43.478 0.00 0.00 33.30 2.66
160 161 3.435671 CGGGTGTCATTCCTTCACTAAAC 59.564 47.826 0.00 0.00 33.30 2.01
161 162 3.558321 CCGGGTGTCATTCCTTCACTAAA 60.558 47.826 0.00 0.00 33.30 1.85
162 163 2.027561 CCGGGTGTCATTCCTTCACTAA 60.028 50.000 0.00 0.00 33.30 2.24
163 164 1.553248 CCGGGTGTCATTCCTTCACTA 59.447 52.381 0.00 0.00 33.30 2.74
164 165 0.324943 CCGGGTGTCATTCCTTCACT 59.675 55.000 0.00 0.00 33.30 3.41
165 166 0.676782 CCCGGGTGTCATTCCTTCAC 60.677 60.000 14.18 0.00 0.00 3.18
166 167 1.682849 CCCGGGTGTCATTCCTTCA 59.317 57.895 14.18 0.00 0.00 3.02
167 168 1.077716 CCCCGGGTGTCATTCCTTC 60.078 63.158 21.85 0.00 0.00 3.46
168 169 0.548197 TACCCCGGGTGTCATTCCTT 60.548 55.000 21.85 0.00 36.19 3.36
169 170 0.548197 TTACCCCGGGTGTCATTCCT 60.548 55.000 21.85 0.00 36.19 3.36
170 171 0.549469 ATTACCCCGGGTGTCATTCC 59.451 55.000 21.85 0.00 36.19 3.01
171 172 1.476291 GGATTACCCCGGGTGTCATTC 60.476 57.143 21.85 9.13 36.19 2.67
172 173 0.549469 GGATTACCCCGGGTGTCATT 59.451 55.000 21.85 5.50 36.19 2.57
173 174 0.622154 TGGATTACCCCGGGTGTCAT 60.622 55.000 21.85 13.72 36.19 3.06
174 175 1.229561 TGGATTACCCCGGGTGTCA 60.230 57.895 21.85 9.11 36.19 3.58
175 176 1.222661 GTGGATTACCCCGGGTGTC 59.777 63.158 21.85 16.05 36.19 3.67
176 177 1.539372 TGTGGATTACCCCGGGTGT 60.539 57.895 21.85 19.19 36.19 4.16
177 178 1.223487 CTGTGGATTACCCCGGGTG 59.777 63.158 21.85 13.82 36.19 4.61
178 179 1.229723 ACTGTGGATTACCCCGGGT 60.230 57.895 21.85 15.24 40.16 5.28
179 180 1.223487 CACTGTGGATTACCCCGGG 59.777 63.158 15.80 15.80 34.81 5.73
180 181 0.616371 TTCACTGTGGATTACCCCGG 59.384 55.000 8.11 0.00 34.81 5.73
181 182 1.553248 TCTTCACTGTGGATTACCCCG 59.447 52.381 8.11 0.00 34.81 5.73
182 183 3.713826 TTCTTCACTGTGGATTACCCC 57.286 47.619 8.11 0.00 34.81 4.95
183 184 3.435671 CGTTTCTTCACTGTGGATTACCC 59.564 47.826 8.11 0.00 34.81 3.69
184 185 3.435671 CCGTTTCTTCACTGTGGATTACC 59.564 47.826 8.11 0.00 0.00 2.85
185 186 4.062991 ACCGTTTCTTCACTGTGGATTAC 58.937 43.478 8.11 0.00 0.00 1.89
186 187 4.345859 ACCGTTTCTTCACTGTGGATTA 57.654 40.909 8.11 0.00 0.00 1.75
187 188 3.208747 ACCGTTTCTTCACTGTGGATT 57.791 42.857 8.11 0.00 0.00 3.01
188 189 2.930826 ACCGTTTCTTCACTGTGGAT 57.069 45.000 8.11 0.00 0.00 3.41
189 190 3.322541 TCATACCGTTTCTTCACTGTGGA 59.677 43.478 8.11 0.00 0.00 4.02
190 191 3.659786 TCATACCGTTTCTTCACTGTGG 58.340 45.455 8.11 0.00 0.00 4.17
191 192 5.171476 AGATCATACCGTTTCTTCACTGTG 58.829 41.667 0.17 0.17 0.00 3.66
192 193 5.407407 AGATCATACCGTTTCTTCACTGT 57.593 39.130 0.00 0.00 0.00 3.55
193 194 7.036220 AGTAAGATCATACCGTTTCTTCACTG 58.964 38.462 4.52 0.00 31.29 3.66
194 195 7.171630 AGTAAGATCATACCGTTTCTTCACT 57.828 36.000 4.52 0.00 31.29 3.41
195 196 9.530633 AATAGTAAGATCATACCGTTTCTTCAC 57.469 33.333 4.52 0.00 31.29 3.18
196 197 9.745880 GAATAGTAAGATCATACCGTTTCTTCA 57.254 33.333 4.52 0.00 31.29 3.02
197 198 9.194271 GGAATAGTAAGATCATACCGTTTCTTC 57.806 37.037 4.52 0.78 31.29 2.87
198 199 8.925338 AGGAATAGTAAGATCATACCGTTTCTT 58.075 33.333 4.52 0.77 33.29 2.52
199 200 8.480133 AGGAATAGTAAGATCATACCGTTTCT 57.520 34.615 4.52 2.16 0.00 2.52
200 201 9.194271 GAAGGAATAGTAAGATCATACCGTTTC 57.806 37.037 4.52 5.84 0.00 2.78
201 202 8.701895 TGAAGGAATAGTAAGATCATACCGTTT 58.298 33.333 4.52 0.00 0.00 3.60
202 203 8.246430 TGAAGGAATAGTAAGATCATACCGTT 57.754 34.615 4.52 0.68 0.00 4.44
203 204 7.834881 TGAAGGAATAGTAAGATCATACCGT 57.165 36.000 4.52 0.00 0.00 4.83
204 205 8.979574 GTTTGAAGGAATAGTAAGATCATACCG 58.020 37.037 4.52 0.00 0.00 4.02
205 206 9.832445 TGTTTGAAGGAATAGTAAGATCATACC 57.168 33.333 4.52 0.00 0.00 2.73
209 210 9.739276 ACATTGTTTGAAGGAATAGTAAGATCA 57.261 29.630 0.00 0.00 0.00 2.92
216 217 9.883142 TTCAAAAACATTGTTTGAAGGAATAGT 57.117 25.926 15.17 0.00 45.44 2.12
244 245 8.956533 AACAACAATGCCAAAGTAAAAGTTAT 57.043 26.923 0.00 0.00 0.00 1.89
245 246 8.035394 TGAACAACAATGCCAAAGTAAAAGTTA 58.965 29.630 0.00 0.00 0.00 2.24
246 247 6.876257 TGAACAACAATGCCAAAGTAAAAGTT 59.124 30.769 0.00 0.00 0.00 2.66
247 248 6.402222 TGAACAACAATGCCAAAGTAAAAGT 58.598 32.000 0.00 0.00 0.00 2.66
248 249 6.900568 TGAACAACAATGCCAAAGTAAAAG 57.099 33.333 0.00 0.00 0.00 2.27
249 250 7.672983 TTTGAACAACAATGCCAAAGTAAAA 57.327 28.000 0.00 0.00 38.36 1.52
250 251 7.672983 TTTTGAACAACAATGCCAAAGTAAA 57.327 28.000 0.00 0.00 38.36 2.01
251 252 7.856145 ATTTTGAACAACAATGCCAAAGTAA 57.144 28.000 0.00 0.00 38.36 2.24
252 253 7.439655 GGTATTTTGAACAACAATGCCAAAGTA 59.560 33.333 16.01 0.00 38.36 2.24
253 254 6.259829 GGTATTTTGAACAACAATGCCAAAGT 59.740 34.615 16.01 0.00 38.36 2.66
254 255 6.259608 TGGTATTTTGAACAACAATGCCAAAG 59.740 34.615 18.60 0.00 38.36 2.77
255 256 6.115446 TGGTATTTTGAACAACAATGCCAAA 58.885 32.000 18.60 0.00 38.36 3.28
256 257 5.674525 TGGTATTTTGAACAACAATGCCAA 58.325 33.333 18.60 10.19 38.36 4.52
257 258 5.282055 TGGTATTTTGAACAACAATGCCA 57.718 34.783 17.81 17.81 38.36 4.92
258 259 5.931146 TCATGGTATTTTGAACAACAATGCC 59.069 36.000 15.03 15.03 38.36 4.40
259 260 7.418840 TTCATGGTATTTTGAACAACAATGC 57.581 32.000 0.00 0.00 38.36 3.56
260 261 8.991026 ACATTCATGGTATTTTGAACAACAATG 58.009 29.630 0.00 0.00 38.36 2.82
261 262 9.206870 GACATTCATGGTATTTTGAACAACAAT 57.793 29.630 0.00 0.00 38.36 2.71
262 263 8.200120 TGACATTCATGGTATTTTGAACAACAA 58.800 29.630 0.00 0.00 34.87 2.83
263 264 7.720442 TGACATTCATGGTATTTTGAACAACA 58.280 30.769 0.00 0.00 34.87 3.33
264 265 8.761575 ATGACATTCATGGTATTTTGAACAAC 57.238 30.769 0.00 0.00 35.43 3.32
265 266 9.775854 AAATGACATTCATGGTATTTTGAACAA 57.224 25.926 0.05 0.00 37.15 2.83
266 267 9.421806 GAAATGACATTCATGGTATTTTGAACA 57.578 29.630 0.05 0.00 37.15 3.18
267 268 9.643693 AGAAATGACATTCATGGTATTTTGAAC 57.356 29.630 0.05 0.00 37.15 3.18
269 270 9.859427 GAAGAAATGACATTCATGGTATTTTGA 57.141 29.630 0.05 0.00 37.15 2.69
270 271 9.642327 TGAAGAAATGACATTCATGGTATTTTG 57.358 29.630 0.05 0.00 37.15 2.44
276 277 9.643693 GTTTAATGAAGAAATGACATTCATGGT 57.356 29.630 0.05 0.00 41.56 3.55
277 278 9.090692 GGTTTAATGAAGAAATGACATTCATGG 57.909 33.333 0.05 0.00 41.56 3.66
278 279 9.865321 AGGTTTAATGAAGAAATGACATTCATG 57.135 29.630 0.05 0.00 41.56 3.07
280 281 9.076781 TGAGGTTTAATGAAGAAATGACATTCA 57.923 29.630 0.05 0.00 37.36 2.57
284 285 9.177608 CCTATGAGGTTTAATGAAGAAATGACA 57.822 33.333 0.00 0.00 0.00 3.58
308 309 8.874156 ACACATGATACATTGATATACTCACCT 58.126 33.333 0.00 0.00 32.17 4.00
374 375 9.588096 AAGGGAGTACTAAATTCAGAAAACAAT 57.412 29.630 0.00 0.00 0.00 2.71
375 376 8.990163 AAGGGAGTACTAAATTCAGAAAACAA 57.010 30.769 0.00 0.00 0.00 2.83
376 377 8.215050 TGAAGGGAGTACTAAATTCAGAAAACA 58.785 33.333 10.50 0.00 0.00 2.83
377 378 8.617290 TGAAGGGAGTACTAAATTCAGAAAAC 57.383 34.615 10.50 0.00 0.00 2.43
378 379 9.807921 ATTGAAGGGAGTACTAAATTCAGAAAA 57.192 29.630 12.99 3.55 0.00 2.29
379 380 9.449719 GATTGAAGGGAGTACTAAATTCAGAAA 57.550 33.333 12.99 3.80 0.00 2.52
380 381 8.047310 GGATTGAAGGGAGTACTAAATTCAGAA 58.953 37.037 12.99 0.00 0.00 3.02
381 382 7.182026 TGGATTGAAGGGAGTACTAAATTCAGA 59.818 37.037 12.99 7.76 0.00 3.27
382 383 7.338710 TGGATTGAAGGGAGTACTAAATTCAG 58.661 38.462 12.99 0.00 0.00 3.02
383 384 7.265599 TGGATTGAAGGGAGTACTAAATTCA 57.734 36.000 10.50 10.50 0.00 2.57
384 385 8.575649 TTTGGATTGAAGGGAGTACTAAATTC 57.424 34.615 0.00 0.92 0.00 2.17
385 386 8.950007 TTTTGGATTGAAGGGAGTACTAAATT 57.050 30.769 0.00 0.00 0.00 1.82
386 387 8.390921 TCTTTTGGATTGAAGGGAGTACTAAAT 58.609 33.333 0.00 0.00 0.00 1.40
387 388 7.751646 TCTTTTGGATTGAAGGGAGTACTAAA 58.248 34.615 0.00 0.00 0.00 1.85
388 389 7.324388 TCTTTTGGATTGAAGGGAGTACTAA 57.676 36.000 0.00 0.00 0.00 2.24
389 390 6.945636 TCTTTTGGATTGAAGGGAGTACTA 57.054 37.500 0.00 0.00 0.00 1.82
390 391 5.843019 TCTTTTGGATTGAAGGGAGTACT 57.157 39.130 0.00 0.00 0.00 2.73
391 392 6.004574 ACTTCTTTTGGATTGAAGGGAGTAC 58.995 40.000 0.00 0.00 40.83 2.73
392 393 6.003950 CACTTCTTTTGGATTGAAGGGAGTA 58.996 40.000 0.00 0.00 42.09 2.59
393 394 4.829492 CACTTCTTTTGGATTGAAGGGAGT 59.171 41.667 0.00 0.00 42.09 3.85
394 395 4.829492 ACACTTCTTTTGGATTGAAGGGAG 59.171 41.667 10.61 1.86 42.09 4.30
395 396 4.803452 ACACTTCTTTTGGATTGAAGGGA 58.197 39.130 10.61 0.00 42.09 4.20
396 397 4.320494 CGACACTTCTTTTGGATTGAAGGG 60.320 45.833 0.00 0.00 44.25 3.95
397 398 4.275936 ACGACACTTCTTTTGGATTGAAGG 59.724 41.667 0.00 0.00 40.83 3.46
398 399 5.207768 CACGACACTTCTTTTGGATTGAAG 58.792 41.667 0.00 0.00 41.87 3.02
399 400 4.036262 CCACGACACTTCTTTTGGATTGAA 59.964 41.667 0.00 0.00 0.00 2.69
400 401 3.563808 CCACGACACTTCTTTTGGATTGA 59.436 43.478 0.00 0.00 0.00 2.57
401 402 3.315191 ACCACGACACTTCTTTTGGATTG 59.685 43.478 0.00 0.00 0.00 2.67
402 403 3.551846 ACCACGACACTTCTTTTGGATT 58.448 40.909 0.00 0.00 0.00 3.01
403 404 3.208747 ACCACGACACTTCTTTTGGAT 57.791 42.857 0.00 0.00 0.00 3.41
404 405 2.702592 ACCACGACACTTCTTTTGGA 57.297 45.000 0.00 0.00 0.00 3.53
405 406 3.775661 AAACCACGACACTTCTTTTGG 57.224 42.857 0.00 0.00 0.00 3.28
425 426 8.296713 CCTCCGATCAAATTCTTAGTTCAAAAA 58.703 33.333 0.00 0.00 0.00 1.94
426 427 7.094377 CCCTCCGATCAAATTCTTAGTTCAAAA 60.094 37.037 0.00 0.00 0.00 2.44
427 428 6.374333 CCCTCCGATCAAATTCTTAGTTCAAA 59.626 38.462 0.00 0.00 0.00 2.69
428 429 5.880332 CCCTCCGATCAAATTCTTAGTTCAA 59.120 40.000 0.00 0.00 0.00 2.69
429 430 5.188948 TCCCTCCGATCAAATTCTTAGTTCA 59.811 40.000 0.00 0.00 0.00 3.18
430 431 5.671493 TCCCTCCGATCAAATTCTTAGTTC 58.329 41.667 0.00 0.00 0.00 3.01
431 432 5.189934 ACTCCCTCCGATCAAATTCTTAGTT 59.810 40.000 0.00 0.00 0.00 2.24
432 433 4.717280 ACTCCCTCCGATCAAATTCTTAGT 59.283 41.667 0.00 0.00 0.00 2.24
433 434 5.283457 ACTCCCTCCGATCAAATTCTTAG 57.717 43.478 0.00 0.00 0.00 2.18
434 435 5.897824 ACTACTCCCTCCGATCAAATTCTTA 59.102 40.000 0.00 0.00 0.00 2.10
435 436 4.717280 ACTACTCCCTCCGATCAAATTCTT 59.283 41.667 0.00 0.00 0.00 2.52
436 437 4.290942 ACTACTCCCTCCGATCAAATTCT 58.709 43.478 0.00 0.00 0.00 2.40
437 438 4.674281 ACTACTCCCTCCGATCAAATTC 57.326 45.455 0.00 0.00 0.00 2.17
438 439 6.749036 AATACTACTCCCTCCGATCAAATT 57.251 37.500 0.00 0.00 0.00 1.82
439 440 6.749036 AAATACTACTCCCTCCGATCAAAT 57.251 37.500 0.00 0.00 0.00 2.32
440 441 6.837568 ACTAAATACTACTCCCTCCGATCAAA 59.162 38.462 0.00 0.00 0.00 2.69
441 442 6.371278 ACTAAATACTACTCCCTCCGATCAA 58.629 40.000 0.00 0.00 0.00 2.57
442 443 5.950023 ACTAAATACTACTCCCTCCGATCA 58.050 41.667 0.00 0.00 0.00 2.92
443 444 8.578448 AATACTAAATACTACTCCCTCCGATC 57.422 38.462 0.00 0.00 0.00 3.69
444 445 7.614974 GGAATACTAAATACTACTCCCTCCGAT 59.385 40.741 0.00 0.00 0.00 4.18
445 446 6.944862 GGAATACTAAATACTACTCCCTCCGA 59.055 42.308 0.00 0.00 0.00 4.55
446 447 6.718454 TGGAATACTAAATACTACTCCCTCCG 59.282 42.308 0.00 0.00 0.00 4.63
447 448 8.488308 TTGGAATACTAAATACTACTCCCTCC 57.512 38.462 0.00 0.00 0.00 4.30
459 460 9.471084 CACGAAAACCTTTTTGGAATACTAAAT 57.529 29.630 0.00 0.00 39.71 1.40
460 461 7.921745 CCACGAAAACCTTTTTGGAATACTAAA 59.078 33.333 0.00 0.00 39.71 1.85
461 462 7.284944 TCCACGAAAACCTTTTTGGAATACTAA 59.715 33.333 0.00 0.00 35.33 2.24
462 463 6.771749 TCCACGAAAACCTTTTTGGAATACTA 59.228 34.615 0.00 0.00 35.33 1.82
463 464 5.595133 TCCACGAAAACCTTTTTGGAATACT 59.405 36.000 0.00 0.00 35.33 2.12
464 465 5.834169 TCCACGAAAACCTTTTTGGAATAC 58.166 37.500 0.00 0.00 35.33 1.89
465 466 6.274579 GTTCCACGAAAACCTTTTTGGAATA 58.725 36.000 15.14 0.00 43.42 1.75
466 467 5.113383 GTTCCACGAAAACCTTTTTGGAAT 58.887 37.500 15.14 0.00 43.42 3.01
467 468 4.496360 GTTCCACGAAAACCTTTTTGGAA 58.504 39.130 10.62 10.62 41.32 3.53
468 469 3.427773 CGTTCCACGAAAACCTTTTTGGA 60.428 43.478 0.00 2.33 46.05 3.53
469 470 2.855370 CGTTCCACGAAAACCTTTTTGG 59.145 45.455 0.00 0.24 46.05 3.28
482 483 2.505498 CGCGGAAGATCGTTCCACG 61.505 63.158 18.27 16.73 44.19 4.94
483 484 1.411493 GACGCGGAAGATCGTTCCAC 61.411 60.000 12.47 11.12 39.22 4.02
484 485 1.153901 GACGCGGAAGATCGTTCCA 60.154 57.895 12.47 0.00 39.22 3.53
485 486 0.734942 TTGACGCGGAAGATCGTTCC 60.735 55.000 12.47 11.74 39.22 3.62
486 487 1.065358 TTTGACGCGGAAGATCGTTC 58.935 50.000 12.47 0.00 39.22 3.95
487 488 0.788391 GTTTGACGCGGAAGATCGTT 59.212 50.000 12.47 0.00 39.22 3.85
488 489 0.319211 TGTTTGACGCGGAAGATCGT 60.319 50.000 12.47 0.00 42.09 3.73
489 490 0.093026 GTGTTTGACGCGGAAGATCG 59.907 55.000 12.47 0.00 0.00 3.69
490 491 0.442699 GGTGTTTGACGCGGAAGATC 59.557 55.000 12.47 0.00 0.00 2.75
491 492 0.250124 TGGTGTTTGACGCGGAAGAT 60.250 50.000 12.47 0.00 0.00 2.40
492 493 0.878523 CTGGTGTTTGACGCGGAAGA 60.879 55.000 12.47 0.00 0.00 2.87
493 494 0.878523 TCTGGTGTTTGACGCGGAAG 60.879 55.000 12.47 0.00 0.00 3.46
494 495 1.144276 TCTGGTGTTTGACGCGGAA 59.856 52.632 12.47 0.00 0.00 4.30
495 496 1.593209 GTCTGGTGTTTGACGCGGA 60.593 57.895 12.47 0.00 0.00 5.54
496 497 2.604174 GGTCTGGTGTTTGACGCGG 61.604 63.158 12.47 0.00 34.31 6.46
497 498 2.604174 GGGTCTGGTGTTTGACGCG 61.604 63.158 3.53 3.53 36.65 6.01
498 499 1.098712 TTGGGTCTGGTGTTTGACGC 61.099 55.000 0.00 0.00 43.48 5.19
499 500 1.266718 CATTGGGTCTGGTGTTTGACG 59.733 52.381 0.00 0.00 34.31 4.35
500 501 2.306847 ACATTGGGTCTGGTGTTTGAC 58.693 47.619 0.00 0.00 0.00 3.18
501 502 2.746279 ACATTGGGTCTGGTGTTTGA 57.254 45.000 0.00 0.00 0.00 2.69
502 503 2.287547 CGAACATTGGGTCTGGTGTTTG 60.288 50.000 0.00 0.00 35.15 2.93
503 504 1.953686 CGAACATTGGGTCTGGTGTTT 59.046 47.619 0.00 0.00 35.15 2.83
504 505 1.133915 ACGAACATTGGGTCTGGTGTT 60.134 47.619 0.00 0.00 37.49 3.32
505 506 0.472471 ACGAACATTGGGTCTGGTGT 59.528 50.000 0.00 0.00 0.00 4.16
506 507 0.874390 CACGAACATTGGGTCTGGTG 59.126 55.000 0.00 0.00 0.00 4.17
507 508 0.472471 ACACGAACATTGGGTCTGGT 59.528 50.000 0.00 0.00 0.00 4.00
508 509 0.874390 CACACGAACATTGGGTCTGG 59.126 55.000 0.00 0.00 0.00 3.86
509 510 0.238289 GCACACGAACATTGGGTCTG 59.762 55.000 0.00 0.00 0.00 3.51
510 511 0.108585 AGCACACGAACATTGGGTCT 59.891 50.000 0.00 0.00 0.00 3.85
511 512 1.803334 TAGCACACGAACATTGGGTC 58.197 50.000 0.00 0.00 0.00 4.46
512 513 2.489938 ATAGCACACGAACATTGGGT 57.510 45.000 0.00 0.00 0.00 4.51
513 514 2.287915 GCTATAGCACACGAACATTGGG 59.712 50.000 20.01 0.00 41.59 4.12
514 515 3.592381 GCTATAGCACACGAACATTGG 57.408 47.619 20.01 0.00 41.59 3.16
550 551 2.759973 CAGGCGGGGCTGAGACTA 60.760 66.667 16.42 0.00 0.00 2.59
666 668 3.812019 CGTCCCGGTCGTCTCTGG 61.812 72.222 0.00 0.00 0.00 3.86
715 717 0.965866 GGCCTGTTTACTGCCTTCCC 60.966 60.000 0.00 0.00 42.01 3.97
760 764 3.368013 GGGAAGGTTTTAAAATGGGCTCG 60.368 47.826 3.52 0.00 0.00 5.03
877 881 4.280019 GGTTTGCGGGGGTCTGGT 62.280 66.667 0.00 0.00 0.00 4.00
880 884 2.204029 TAGGGTTTGCGGGGGTCT 60.204 61.111 0.00 0.00 0.00 3.85
1318 1345 1.822990 CAGAATTGCAGGAACATGGCT 59.177 47.619 0.00 0.00 0.00 4.75
1387 1414 1.289109 CGACCCACTTGTACTTGGCG 61.289 60.000 0.00 0.00 0.00 5.69
1422 1449 1.331214 CACCAAACAGGGCTGACATT 58.669 50.000 0.00 0.00 43.89 2.71
1430 1457 2.437651 ACCAAAATTCCACCAAACAGGG 59.562 45.455 0.00 0.00 43.89 4.45
1480 1507 5.124776 CCAAGGCGTCCAAAATTAAGACATA 59.875 40.000 0.00 0.00 0.00 2.29
1489 1516 3.576550 ACATAAACCAAGGCGTCCAAAAT 59.423 39.130 0.00 0.00 0.00 1.82
1535 1565 0.391661 CTGCCTAGCGCTCCAAAAGA 60.392 55.000 16.34 0.00 38.78 2.52
1610 1641 9.177608 CACCAGATCCTGAATCATAAAAACTTA 57.822 33.333 0.00 0.00 36.79 2.24
1643 1674 2.878406 CACCAACACCAGTAGGAAACAG 59.122 50.000 0.00 0.00 38.69 3.16
1653 1684 3.882888 ACTGATACAAACACCAACACCAG 59.117 43.478 0.00 0.00 0.00 4.00
1664 1695 9.654663 AGAGGTTCTACATTAACTGATACAAAC 57.345 33.333 0.00 0.00 0.00 2.93
1700 1731 4.744631 CGGGAAAAGAGTGAAAACCAAATG 59.255 41.667 0.00 0.00 0.00 2.32
1713 1744 6.079424 TGAATAACAAAACCGGGAAAAGAG 57.921 37.500 6.32 0.00 0.00 2.85
1716 1747 6.706716 GGAATTGAATAACAAAACCGGGAAAA 59.293 34.615 6.32 0.00 42.03 2.29
1787 1818 8.137745 ACATACAAGATCAAACCAAAATCCAT 57.862 30.769 0.00 0.00 0.00 3.41
1825 1856 6.900189 TCTGCATTTAAATTGCACAAAATGG 58.100 32.000 16.37 8.94 38.92 3.16
2039 2070 8.144478 CGAGACCAAAGAATTATAATCCTCAGA 58.856 37.037 0.00 0.00 0.00 3.27
2064 2095 2.286713 TGAAACATCCGAAAGCACAACG 60.287 45.455 0.00 0.00 0.00 4.10
2144 2175 6.573664 TGAAACCATTAACACAAGAGGATG 57.426 37.500 0.00 0.00 0.00 3.51
2148 2181 5.695851 AGCTGAAACCATTAACACAAGAG 57.304 39.130 0.00 0.00 0.00 2.85
2182 2215 6.547141 ACAAATGGTGAGAGAAATCAGAAACA 59.453 34.615 0.00 0.00 0.00 2.83
2202 2235 9.558396 TTCCTGCATATTTTTGAAAGAACAAAT 57.442 25.926 0.00 0.00 39.09 2.32
2307 2340 3.007940 CCAGTAACCAACAGAGTGATGGA 59.992 47.826 9.95 0.00 42.23 3.41
2713 2746 7.254455 CGACCAAAATAATAGCACTTAGAGTGG 60.254 40.741 9.85 0.00 46.01 4.00
2731 2764 6.271566 GTTACCACCAAAATTACGACCAAAA 58.728 36.000 0.00 0.00 0.00 2.44
3107 3143 5.885230 CAAGAGATGCATCCTGTTTAACA 57.115 39.130 23.06 0.00 0.00 2.41
3328 3364 2.238646 CCTGTCATAGCCCTGTTAACCA 59.761 50.000 2.48 0.00 0.00 3.67
3749 4173 4.843220 ATTCAAACAAGAGCTTCCACAG 57.157 40.909 0.00 0.00 0.00 3.66
3752 4176 6.899393 AACATATTCAAACAAGAGCTTCCA 57.101 33.333 0.00 0.00 0.00 3.53
3803 4227 5.923684 ACAAAACGAAATGTGACACAAGTTT 59.076 32.000 13.23 17.50 31.87 2.66
3820 4244 6.229945 CAATACAAAACACACACACAAAACG 58.770 36.000 0.00 0.00 0.00 3.60
3946 4370 2.236489 AACAATGATTGTGGAGGGGG 57.764 50.000 12.09 0.00 44.59 5.40
3973 4397 1.023513 CAGGTGGACAGCTAGCTTGC 61.024 60.000 16.46 12.54 37.39 4.01
3974 4398 1.023513 GCAGGTGGACAGCTAGCTTG 61.024 60.000 16.46 13.22 37.39 4.01
3975 4399 1.197430 AGCAGGTGGACAGCTAGCTT 61.197 55.000 16.46 6.82 38.87 3.74
3976 4400 1.611851 AGCAGGTGGACAGCTAGCT 60.612 57.895 12.68 12.68 37.95 3.32
3989 4417 2.679837 CACATAGTTAACCAGCAGCAGG 59.320 50.000 1.37 1.37 0.00 4.85
4063 4491 8.814038 AGAACATGCTAGATTTAAGTTTCCAT 57.186 30.769 0.00 0.00 0.00 3.41
4126 4554 5.712152 ACCCACATGTGAAGAAAAAGATC 57.288 39.130 27.46 0.00 0.00 2.75
4232 4660 7.394359 ACAAGAGACCAAAAGTATGCATAATGT 59.606 33.333 8.28 0.00 0.00 2.71
4770 5198 7.370238 AGGCATATTCTTTATAACCCCCTTTT 58.630 34.615 0.00 0.00 0.00 2.27
5241 5671 4.586884 TCTCCTCAACATGTACTAGACGT 58.413 43.478 0.00 0.00 0.00 4.34
5522 6128 7.953005 TTTGGCAGTTTAAGGATTATGATGA 57.047 32.000 0.00 0.00 0.00 2.92
5641 6252 7.491048 GTGAGCAAGTTCCAAAAATAAACAAGA 59.509 33.333 0.00 0.00 0.00 3.02
5811 6422 4.907457 ATGGGATGCGACCATTCC 57.093 55.556 1.19 0.00 46.25 3.01
6076 6690 1.589716 GCCACTGCAATCCACCTGAC 61.590 60.000 0.00 0.00 37.47 3.51
6083 6697 0.168128 GTTACACGCCACTGCAATCC 59.832 55.000 0.00 0.00 37.32 3.01
6084 6698 0.871722 TGTTACACGCCACTGCAATC 59.128 50.000 0.00 0.00 37.32 2.67
6086 6700 2.171341 TATGTTACACGCCACTGCAA 57.829 45.000 0.00 0.00 37.32 4.08
6098 6739 5.395324 CGGTCCCATCCCAGATATATGTTAC 60.395 48.000 0.00 0.00 0.00 2.50
6136 6777 3.427233 GCTGAGCTAAAGCAATCCAAGTG 60.427 47.826 14.48 0.00 45.16 3.16
6170 6811 1.368345 CTTTGCCGGATGATGCACGA 61.368 55.000 5.05 0.00 37.18 4.35
6199 6851 0.685097 TGGTAGACCAGGAACAGCAC 59.315 55.000 0.00 0.00 42.01 4.40
6237 6889 8.250332 GCAATATCCACAAATTAAAAGGTCTGA 58.750 33.333 0.00 0.00 0.00 3.27
6238 6890 8.253113 AGCAATATCCACAAATTAAAAGGTCTG 58.747 33.333 0.00 0.00 0.00 3.51
6239 6891 8.253113 CAGCAATATCCACAAATTAAAAGGTCT 58.747 33.333 0.00 0.00 0.00 3.85
6242 6894 9.520204 CTACAGCAATATCCACAAATTAAAAGG 57.480 33.333 0.00 0.00 0.00 3.11
6368 7023 2.583520 CCAGAGGCCAGAGCTCAC 59.416 66.667 17.77 4.59 39.73 3.51
6431 7114 6.426937 TGGCACTTCAAGACTAACAAATACTC 59.573 38.462 0.00 0.00 0.00 2.59
6435 7118 5.594317 AGTTGGCACTTCAAGACTAACAAAT 59.406 36.000 11.77 0.00 0.00 2.32
6440 7126 4.338118 CCAAAGTTGGCACTTCAAGACTAA 59.662 41.667 0.00 0.00 42.89 2.24
6457 7143 3.089284 GCACCCAGCTATTAACCAAAGT 58.911 45.455 0.00 0.00 41.15 2.66
6480 7166 0.499761 CTTTCTGCAAAAACGCGCTG 59.500 50.000 5.73 1.02 33.35 5.18
6490 7176 4.364415 ACTAAAACGCAACTTTCTGCAA 57.636 36.364 0.00 0.00 42.77 4.08
6512 7198 2.276863 CTGACTGTCGCCGAGCAGAT 62.277 60.000 18.83 7.29 36.62 2.90
6536 7222 0.032615 CAGTAGAGAGGCAGGGAGGT 60.033 60.000 0.00 0.00 0.00 3.85
6551 7237 8.739039 CCAATTGAAACATAAGATCCAACAGTA 58.261 33.333 7.12 0.00 0.00 2.74
6557 7243 7.234371 TGGAAACCAATTGAAACATAAGATCCA 59.766 33.333 7.12 4.99 0.00 3.41
6588 7274 1.335324 GCTGCAACAACAGTGCCTTAG 60.335 52.381 0.00 0.00 41.49 2.18
6590 7276 1.321805 TGCTGCAACAACAGTGCCTT 61.322 50.000 0.00 0.00 41.49 4.35
6591 7277 1.321805 TTGCTGCAACAACAGTGCCT 61.322 50.000 11.69 0.00 41.49 4.75
6596 7982 4.396519 CAAAGTTTTTGCTGCAACAACAG 58.603 39.130 33.12 22.89 36.75 3.16
6599 7985 3.468304 GCAAAGTTTTTGCTGCAACAA 57.532 38.095 15.72 12.43 41.87 2.83
6619 8005 2.232208 GAGAAGGTTTTTGGGGCATCAG 59.768 50.000 0.00 0.00 0.00 2.90
6634 8020 4.543590 TTTTGCAGTAGGAGAGAGAAGG 57.456 45.455 0.00 0.00 0.00 3.46
6648 8034 8.246908 TGATGCTCTAAAATTGAATTTTGCAG 57.753 30.769 22.30 17.81 39.99 4.41
6667 8053 4.943705 ACCGATGATGTAAAAGTTGATGCT 59.056 37.500 0.00 0.00 0.00 3.79
6691 8077 1.918293 ACCACCCGAGCATCTCCAA 60.918 57.895 0.00 0.00 0.00 3.53
6692 8078 2.284625 ACCACCCGAGCATCTCCA 60.285 61.111 0.00 0.00 0.00 3.86
6693 8079 2.187946 CACCACCCGAGCATCTCC 59.812 66.667 0.00 0.00 0.00 3.71
6694 8080 1.153549 GTCACCACCCGAGCATCTC 60.154 63.158 0.00 0.00 0.00 2.75
6695 8081 2.982130 GTCACCACCCGAGCATCT 59.018 61.111 0.00 0.00 0.00 2.90
6696 8082 2.509336 CGTCACCACCCGAGCATC 60.509 66.667 0.00 0.00 0.00 3.91
6697 8083 4.760047 GCGTCACCACCCGAGCAT 62.760 66.667 0.00 0.00 0.00 3.79
6699 8085 4.980805 TTGCGTCACCACCCGAGC 62.981 66.667 0.00 0.00 0.00 5.03
6700 8086 2.149803 TAGTTGCGTCACCACCCGAG 62.150 60.000 0.00 0.00 0.00 4.63
6701 8087 1.537814 ATAGTTGCGTCACCACCCGA 61.538 55.000 0.00 0.00 0.00 5.14
6702 8088 0.672401 AATAGTTGCGTCACCACCCG 60.672 55.000 0.00 0.00 0.00 5.28
6704 8090 1.803334 TCAATAGTTGCGTCACCACC 58.197 50.000 0.00 0.00 0.00 4.61
6716 8102 4.826556 GAGGAGACTGCAACTTCAATAGT 58.173 43.478 0.00 0.00 44.43 2.12
6729 8115 1.893786 CTTCCGTGGGAGGAGACTG 59.106 63.158 0.00 0.00 44.43 3.51
6731 8117 1.617947 ATGCTTCCGTGGGAGGAGAC 61.618 60.000 0.00 0.00 41.98 3.36
6732 8118 0.032515 TATGCTTCCGTGGGAGGAGA 60.033 55.000 0.00 0.00 41.98 3.71
6734 8120 1.209504 CTTTATGCTTCCGTGGGAGGA 59.790 52.381 0.00 0.00 38.79 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.