Multiple sequence alignment - TraesCS2D01G363500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G363500 chr2D 100.000 2731 0 0 1 2731 469180276 469183006 0.000000e+00 5044
1 TraesCS2D01G363500 chr2D 90.909 231 19 2 2501 2731 371626218 371625990 2.640000e-80 309
2 TraesCS2D01G363500 chr4B 93.423 1627 106 1 542 2168 551784813 551786438 0.000000e+00 2410
3 TraesCS2D01G363500 chr4B 93.178 1627 110 1 542 2168 551730205 551731830 0.000000e+00 2388
4 TraesCS2D01G363500 chr6D 92.866 1626 113 2 542 2167 450906057 450907679 0.000000e+00 2357
5 TraesCS2D01G363500 chr6D 98.713 544 6 1 1 543 238734963 238735506 0.000000e+00 965
6 TraesCS2D01G363500 chr6D 98.004 551 8 3 1 550 195294359 195293811 0.000000e+00 953
7 TraesCS2D01G363500 chr7B 92.879 1629 105 8 542 2169 150842212 150843830 0.000000e+00 2355
8 TraesCS2D01G363500 chr7D 92.804 1626 113 1 542 2163 107722670 107721045 0.000000e+00 2351
9 TraesCS2D01G363500 chr7D 92.620 1626 119 1 542 2167 463975729 463974105 0.000000e+00 2337
10 TraesCS2D01G363500 chr7D 98.527 543 8 0 1 543 501078711 501078169 0.000000e+00 959
11 TraesCS2D01G363500 chr7D 98.527 543 6 2 1 542 418809075 418808534 0.000000e+00 957
12 TraesCS2D01G363500 chr4D 93.099 1565 103 5 605 2167 102106750 102105189 0.000000e+00 2287
13 TraesCS2D01G363500 chr4D 98.364 550 6 3 1 549 7950090 7949543 0.000000e+00 963
14 TraesCS2D01G363500 chr4D 90.171 234 22 1 2498 2731 39861271 39861503 1.230000e-78 303
15 TraesCS2D01G363500 chr4A 91.216 1628 134 5 542 2169 19185844 19184226 0.000000e+00 2206
16 TraesCS2D01G363500 chr4A 90.086 232 21 2 2500 2731 560406270 560406041 1.590000e-77 300
17 TraesCS2D01G363500 chr2B 90.965 1627 141 3 542 2167 459480923 459479302 0.000000e+00 2185
18 TraesCS2D01G363500 chr2B 93.750 80 2 1 2408 2484 547853944 547854023 1.720000e-22 117
19 TraesCS2D01G363500 chr5D 98.891 541 6 0 1 541 430884089 430884629 0.000000e+00 966
20 TraesCS2D01G363500 chr5D 89.362 235 23 2 2498 2731 482894677 482894444 7.400000e-76 294
21 TraesCS2D01G363500 chr5D 88.793 232 22 4 2501 2731 230030614 230030842 5.760000e-72 281
22 TraesCS2D01G363500 chr1D 98.524 542 7 1 1 541 462024354 462023813 0.000000e+00 955
23 TraesCS2D01G363500 chr1D 98.349 545 8 1 1 544 484373781 484373237 0.000000e+00 955
24 TraesCS2D01G363500 chr1D 88.696 230 24 2 2503 2731 452638041 452638269 2.070000e-71 279
25 TraesCS2D01G363500 chrUn 96.986 564 14 3 1 563 67808571 67808010 0.000000e+00 944
26 TraesCS2D01G363500 chr2A 96.215 317 12 0 2168 2484 608941359 608941675 1.120000e-143 520
27 TraesCS2D01G363500 chr1A 88.983 236 22 4 2498 2731 416518398 416518165 3.440000e-74 289
28 TraesCS2D01G363500 chr1A 88.983 236 22 4 2498 2731 505561891 505562124 3.440000e-74 289
29 TraesCS2D01G363500 chr3D 89.035 228 21 4 2506 2731 390672378 390672153 2.070000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G363500 chr2D 469180276 469183006 2730 False 5044 5044 100.000 1 2731 1 chr2D.!!$F1 2730
1 TraesCS2D01G363500 chr4B 551784813 551786438 1625 False 2410 2410 93.423 542 2168 1 chr4B.!!$F2 1626
2 TraesCS2D01G363500 chr4B 551730205 551731830 1625 False 2388 2388 93.178 542 2168 1 chr4B.!!$F1 1626
3 TraesCS2D01G363500 chr6D 450906057 450907679 1622 False 2357 2357 92.866 542 2167 1 chr6D.!!$F2 1625
4 TraesCS2D01G363500 chr6D 238734963 238735506 543 False 965 965 98.713 1 543 1 chr6D.!!$F1 542
5 TraesCS2D01G363500 chr6D 195293811 195294359 548 True 953 953 98.004 1 550 1 chr6D.!!$R1 549
6 TraesCS2D01G363500 chr7B 150842212 150843830 1618 False 2355 2355 92.879 542 2169 1 chr7B.!!$F1 1627
7 TraesCS2D01G363500 chr7D 107721045 107722670 1625 True 2351 2351 92.804 542 2163 1 chr7D.!!$R1 1621
8 TraesCS2D01G363500 chr7D 463974105 463975729 1624 True 2337 2337 92.620 542 2167 1 chr7D.!!$R3 1625
9 TraesCS2D01G363500 chr7D 501078169 501078711 542 True 959 959 98.527 1 543 1 chr7D.!!$R4 542
10 TraesCS2D01G363500 chr7D 418808534 418809075 541 True 957 957 98.527 1 542 1 chr7D.!!$R2 541
11 TraesCS2D01G363500 chr4D 102105189 102106750 1561 True 2287 2287 93.099 605 2167 1 chr4D.!!$R2 1562
12 TraesCS2D01G363500 chr4D 7949543 7950090 547 True 963 963 98.364 1 549 1 chr4D.!!$R1 548
13 TraesCS2D01G363500 chr4A 19184226 19185844 1618 True 2206 2206 91.216 542 2169 1 chr4A.!!$R1 1627
14 TraesCS2D01G363500 chr2B 459479302 459480923 1621 True 2185 2185 90.965 542 2167 1 chr2B.!!$R1 1625
15 TraesCS2D01G363500 chr5D 430884089 430884629 540 False 966 966 98.891 1 541 1 chr5D.!!$F2 540
16 TraesCS2D01G363500 chr1D 462023813 462024354 541 True 955 955 98.524 1 541 1 chr1D.!!$R1 540
17 TraesCS2D01G363500 chr1D 484373237 484373781 544 True 955 955 98.349 1 544 1 chr1D.!!$R2 543
18 TraesCS2D01G363500 chrUn 67808010 67808571 561 True 944 944 96.986 1 563 1 chrUn.!!$R1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 772 0.461548 ATGATGTCGACTGCCATCGT 59.538 50.0 17.92 9.66 42.8 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2551 2566 0.030235 GTGTCCAAACTCCCGCAAAC 59.97 55.0 0.0 0.0 0.0 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
480 482 0.531532 CCCCTCTCGTTGCTAGCATG 60.532 60.000 20.13 14.50 0.00 4.06
558 560 1.685765 AGTACGATGGCCTGGCTCA 60.686 57.895 19.68 15.02 0.00 4.26
601 603 3.451178 CACCGATTCTTCCTCCTCCTTAA 59.549 47.826 0.00 0.00 0.00 1.85
604 606 3.493524 CGATTCTTCCTCCTCCTTAAGCC 60.494 52.174 0.00 0.00 0.00 4.35
678 680 1.223487 GCGGTCATTAGGAGCCCAA 59.777 57.895 0.00 0.00 40.99 4.12
716 718 2.963782 ACCACTTCGTCCTCTGTTTAGT 59.036 45.455 0.00 0.00 0.00 2.24
717 719 3.387050 ACCACTTCGTCCTCTGTTTAGTT 59.613 43.478 0.00 0.00 0.00 2.24
718 720 3.988517 CCACTTCGTCCTCTGTTTAGTTC 59.011 47.826 0.00 0.00 0.00 3.01
720 722 3.640029 ACTTCGTCCTCTGTTTAGTTCCA 59.360 43.478 0.00 0.00 0.00 3.53
770 772 0.461548 ATGATGTCGACTGCCATCGT 59.538 50.000 17.92 9.66 42.80 3.73
795 797 2.145397 TCGCTAGGTCAGGAATCAGT 57.855 50.000 0.00 0.00 0.00 3.41
846 848 3.015327 GAGCACTGCATCAGATTCCTTT 58.985 45.455 3.30 0.00 35.18 3.11
854 856 4.705991 TGCATCAGATTCCTTTTGCATGTA 59.294 37.500 0.00 0.00 34.58 2.29
855 857 5.361571 TGCATCAGATTCCTTTTGCATGTAT 59.638 36.000 0.00 0.00 34.58 2.29
1045 1047 0.547954 GAGAAGAGAGGGGGTGGGTT 60.548 60.000 0.00 0.00 0.00 4.11
1053 1055 0.495008 AGGGGGTGGGTTAGTAGTGT 59.505 55.000 0.00 0.00 0.00 3.55
1198 1202 1.500108 CAGATCGAGGAGAGCAATGC 58.500 55.000 0.00 0.00 37.82 3.56
1307 1315 0.108756 CCGAGGAAGAACCGAAGACC 60.109 60.000 0.00 0.00 44.74 3.85
1316 1324 3.003173 CCGAAGACCCCTGAGGCA 61.003 66.667 0.00 0.00 40.58 4.75
1317 1325 2.592993 CCGAAGACCCCTGAGGCAA 61.593 63.158 0.00 0.00 40.58 4.52
1376 1388 4.827481 CGCAACTACGGCCACTAT 57.173 55.556 2.24 0.00 0.00 2.12
1427 1439 0.400213 AGGTCATCCTTGCACCGAAA 59.600 50.000 0.00 0.00 42.12 3.46
1442 1455 1.135972 CCGAAACTTGAGTGCATTCCG 60.136 52.381 6.77 1.80 0.00 4.30
1460 1473 1.685224 GATGCCCCTGGACTTCACA 59.315 57.895 0.00 0.00 0.00 3.58
1546 1559 2.028203 TGATGGTGAAGCTGATGAACGA 60.028 45.455 0.00 0.00 0.00 3.85
1550 1563 2.610479 GGTGAAGCTGATGAACGACAGA 60.610 50.000 0.00 0.00 36.38 3.41
1665 1678 4.281941 CCCTCAAGGTCATCATCTTCGATA 59.718 45.833 0.00 0.00 0.00 2.92
1724 1737 3.134127 GAAGCCTTCGCCGCCAAT 61.134 61.111 0.00 0.00 34.57 3.16
1784 1798 6.054941 TGAGTCTGCTTTGAACTGTTTATGA 58.945 36.000 0.00 0.00 0.00 2.15
1824 1838 6.593770 TGTTATGAAGTGTGGTACTGCTTATG 59.406 38.462 0.00 0.00 40.26 1.90
1871 1885 7.290813 TGATCCTCTGTTTATACTCTGCTCTA 58.709 38.462 0.00 0.00 0.00 2.43
1909 1923 2.331451 GTTGTGCCGAAGTGTGCC 59.669 61.111 0.00 0.00 0.00 5.01
1941 1955 3.651423 ACCAACTAGCCAAAGAGGTTACT 59.349 43.478 0.00 0.00 40.61 2.24
2059 2074 1.252904 GCAAGAGGGCATGCAGGAAA 61.253 55.000 21.36 0.00 42.12 3.13
2133 2148 3.944015 GAGTTGAGAAGGCTATGCAATGT 59.056 43.478 0.00 0.00 0.00 2.71
2141 2156 5.540337 AGAAGGCTATGCAATGTAGCTACTA 59.460 40.000 23.84 11.35 43.15 1.82
2155 2170 7.348080 TGTAGCTACTATTCACTACTGCAAT 57.652 36.000 23.84 0.00 36.72 3.56
2169 2184 1.112315 TGCAATCAAACACGCCCCTT 61.112 50.000 0.00 0.00 0.00 3.95
2170 2185 0.667184 GCAATCAAACACGCCCCTTG 60.667 55.000 0.00 0.00 0.00 3.61
2171 2186 0.673437 CAATCAAACACGCCCCTTGT 59.327 50.000 0.00 0.00 0.00 3.16
2172 2187 0.673437 AATCAAACACGCCCCTTGTG 59.327 50.000 0.00 0.00 42.99 3.33
2177 2192 4.263572 CACGCCCCTTGTGTCCCA 62.264 66.667 0.00 0.00 34.84 4.37
2178 2193 3.256960 ACGCCCCTTGTGTCCCAT 61.257 61.111 0.00 0.00 29.74 4.00
2179 2194 2.751436 CGCCCCTTGTGTCCCATG 60.751 66.667 0.00 0.00 0.00 3.66
2180 2195 2.362889 GCCCCTTGTGTCCCATGG 60.363 66.667 4.14 4.14 37.96 3.66
2181 2196 3.180282 CCCCTTGTGTCCCATGGT 58.820 61.111 11.73 0.00 36.79 3.55
2182 2197 1.000896 CCCCTTGTGTCCCATGGTC 60.001 63.158 11.73 4.06 36.79 4.02
2183 2198 1.767036 CCCTTGTGTCCCATGGTCA 59.233 57.895 11.73 6.89 36.79 4.02
2184 2199 0.609131 CCCTTGTGTCCCATGGTCAC 60.609 60.000 22.48 22.48 40.97 3.67
2185 2200 0.110295 CCTTGTGTCCCATGGTCACA 59.890 55.000 25.90 25.90 46.37 3.58
2186 2201 1.272092 CCTTGTGTCCCATGGTCACAT 60.272 52.381 28.35 0.00 46.96 3.21
2187 2202 2.517959 CTTGTGTCCCATGGTCACATT 58.482 47.619 28.35 0.00 46.96 2.71
2188 2203 1.908344 TGTGTCCCATGGTCACATTG 58.092 50.000 25.90 5.87 44.12 2.82
2189 2204 0.527565 GTGTCCCATGGTCACATTGC 59.472 55.000 23.61 7.92 40.46 3.56
2190 2205 0.405198 TGTCCCATGGTCACATTGCT 59.595 50.000 11.73 0.00 34.35 3.91
2191 2206 1.098050 GTCCCATGGTCACATTGCTC 58.902 55.000 11.73 0.00 34.35 4.26
2192 2207 0.392863 TCCCATGGTCACATTGCTCG 60.393 55.000 11.73 0.00 34.35 5.03
2193 2208 1.378882 CCCATGGTCACATTGCTCGG 61.379 60.000 11.73 0.00 34.35 4.63
2194 2209 1.378882 CCATGGTCACATTGCTCGGG 61.379 60.000 2.57 0.00 34.35 5.14
2195 2210 0.677731 CATGGTCACATTGCTCGGGT 60.678 55.000 0.00 0.00 34.35 5.28
2196 2211 0.038166 ATGGTCACATTGCTCGGGTT 59.962 50.000 0.00 0.00 32.00 4.11
2197 2212 0.179004 TGGTCACATTGCTCGGGTTT 60.179 50.000 0.00 0.00 0.00 3.27
2198 2213 0.958822 GGTCACATTGCTCGGGTTTT 59.041 50.000 0.00 0.00 0.00 2.43
2199 2214 1.068541 GGTCACATTGCTCGGGTTTTC 60.069 52.381 0.00 0.00 0.00 2.29
2200 2215 1.880027 GTCACATTGCTCGGGTTTTCT 59.120 47.619 0.00 0.00 0.00 2.52
2201 2216 2.095718 GTCACATTGCTCGGGTTTTCTC 60.096 50.000 0.00 0.00 0.00 2.87
2202 2217 2.154462 CACATTGCTCGGGTTTTCTCT 58.846 47.619 0.00 0.00 0.00 3.10
2203 2218 2.160417 CACATTGCTCGGGTTTTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
2204 2219 2.039084 ACATTGCTCGGGTTTTCTCTCT 59.961 45.455 0.00 0.00 0.00 3.10
2205 2220 3.260884 ACATTGCTCGGGTTTTCTCTCTA 59.739 43.478 0.00 0.00 0.00 2.43
2206 2221 4.080863 ACATTGCTCGGGTTTTCTCTCTAT 60.081 41.667 0.00 0.00 0.00 1.98
2207 2222 4.553330 TTGCTCGGGTTTTCTCTCTATT 57.447 40.909 0.00 0.00 0.00 1.73
2208 2223 4.553330 TGCTCGGGTTTTCTCTCTATTT 57.447 40.909 0.00 0.00 0.00 1.40
2209 2224 4.253685 TGCTCGGGTTTTCTCTCTATTTG 58.746 43.478 0.00 0.00 0.00 2.32
2210 2225 4.020573 TGCTCGGGTTTTCTCTCTATTTGA 60.021 41.667 0.00 0.00 0.00 2.69
2211 2226 4.330347 GCTCGGGTTTTCTCTCTATTTGAC 59.670 45.833 0.00 0.00 0.00 3.18
2212 2227 5.477607 TCGGGTTTTCTCTCTATTTGACA 57.522 39.130 0.00 0.00 0.00 3.58
2213 2228 5.479306 TCGGGTTTTCTCTCTATTTGACAG 58.521 41.667 0.00 0.00 0.00 3.51
2214 2229 4.093556 CGGGTTTTCTCTCTATTTGACAGC 59.906 45.833 0.00 0.00 0.00 4.40
2215 2230 5.249420 GGGTTTTCTCTCTATTTGACAGCT 58.751 41.667 0.00 0.00 0.00 4.24
2216 2231 5.352846 GGGTTTTCTCTCTATTTGACAGCTC 59.647 44.000 0.00 0.00 0.00 4.09
2217 2232 5.062809 GGTTTTCTCTCTATTTGACAGCTCG 59.937 44.000 0.00 0.00 0.00 5.03
2218 2233 5.392767 TTTCTCTCTATTTGACAGCTCGT 57.607 39.130 0.00 0.00 0.00 4.18
2219 2234 6.510879 TTTCTCTCTATTTGACAGCTCGTA 57.489 37.500 0.00 0.00 0.00 3.43
2220 2235 6.701145 TTCTCTCTATTTGACAGCTCGTAT 57.299 37.500 0.00 0.00 0.00 3.06
2221 2236 6.066054 TCTCTCTATTTGACAGCTCGTATG 57.934 41.667 0.00 0.00 0.00 2.39
2222 2237 5.590663 TCTCTCTATTTGACAGCTCGTATGT 59.409 40.000 0.00 0.00 0.00 2.29
2223 2238 5.822278 TCTCTATTTGACAGCTCGTATGTC 58.178 41.667 9.46 9.46 45.88 3.06
2224 2239 5.590663 TCTCTATTTGACAGCTCGTATGTCT 59.409 40.000 14.96 2.63 45.87 3.41
2225 2240 5.582550 TCTATTTGACAGCTCGTATGTCTG 58.417 41.667 14.96 5.74 45.87 3.51
2226 2241 2.654749 TTGACAGCTCGTATGTCTGG 57.345 50.000 14.96 0.00 45.87 3.86
2227 2242 0.173481 TGACAGCTCGTATGTCTGGC 59.827 55.000 14.96 8.25 45.87 4.85
2228 2243 0.173481 GACAGCTCGTATGTCTGGCA 59.827 55.000 9.22 0.00 43.03 4.92
2229 2244 0.108615 ACAGCTCGTATGTCTGGCAC 60.109 55.000 10.24 0.00 32.42 5.01
2230 2245 0.108662 CAGCTCGTATGTCTGGCACA 60.109 55.000 0.00 0.00 40.18 4.57
2232 2247 1.208052 AGCTCGTATGTCTGGCACATT 59.792 47.619 0.00 0.00 43.89 2.71
2233 2248 2.009774 GCTCGTATGTCTGGCACATTT 58.990 47.619 0.00 0.00 43.89 2.32
2234 2249 2.420022 GCTCGTATGTCTGGCACATTTT 59.580 45.455 0.00 0.00 43.89 1.82
2235 2250 3.621268 GCTCGTATGTCTGGCACATTTTA 59.379 43.478 0.00 0.00 43.89 1.52
2236 2251 4.273480 GCTCGTATGTCTGGCACATTTTAT 59.727 41.667 0.00 0.00 43.89 1.40
2237 2252 5.733226 TCGTATGTCTGGCACATTTTATG 57.267 39.130 0.00 0.00 43.89 1.90
2238 2253 4.574421 TCGTATGTCTGGCACATTTTATGG 59.426 41.667 0.00 0.00 43.89 2.74
2239 2254 3.806625 ATGTCTGGCACATTTTATGGC 57.193 42.857 0.00 0.00 43.89 4.40
2240 2255 2.806434 TGTCTGGCACATTTTATGGCT 58.194 42.857 0.12 0.00 42.86 4.75
2241 2256 3.164268 TGTCTGGCACATTTTATGGCTT 58.836 40.909 0.12 0.00 42.86 4.35
2242 2257 3.577848 TGTCTGGCACATTTTATGGCTTT 59.422 39.130 0.12 0.00 42.86 3.51
2243 2258 4.040217 TGTCTGGCACATTTTATGGCTTTT 59.960 37.500 0.12 0.00 42.86 2.27
2244 2259 4.627035 GTCTGGCACATTTTATGGCTTTTC 59.373 41.667 0.12 0.00 42.86 2.29
2245 2260 4.282957 TCTGGCACATTTTATGGCTTTTCA 59.717 37.500 0.12 0.00 42.86 2.69
2246 2261 4.965814 TGGCACATTTTATGGCTTTTCAA 58.034 34.783 0.12 0.00 42.86 2.69
2247 2262 5.371526 TGGCACATTTTATGGCTTTTCAAA 58.628 33.333 0.12 0.00 42.86 2.69
2248 2263 5.824624 TGGCACATTTTATGGCTTTTCAAAA 59.175 32.000 0.12 0.00 42.86 2.44
2249 2264 6.489361 TGGCACATTTTATGGCTTTTCAAAAT 59.511 30.769 0.12 0.00 42.86 1.82
2250 2265 7.663081 TGGCACATTTTATGGCTTTTCAAAATA 59.337 29.630 0.12 0.00 42.86 1.40
2251 2266 8.177013 GGCACATTTTATGGCTTTTCAAAATAG 58.823 33.333 0.00 0.00 39.45 1.73
2252 2267 8.934825 GCACATTTTATGGCTTTTCAAAATAGA 58.065 29.630 0.00 0.00 31.26 1.98
2258 2273 9.912634 TTTATGGCTTTTCAAAATAGAGACTTG 57.087 29.630 0.00 0.00 0.00 3.16
2259 2274 6.959639 TGGCTTTTCAAAATAGAGACTTGT 57.040 33.333 0.00 0.00 0.00 3.16
2260 2275 7.346751 TGGCTTTTCAAAATAGAGACTTGTT 57.653 32.000 0.00 0.00 0.00 2.83
2261 2276 7.781056 TGGCTTTTCAAAATAGAGACTTGTTT 58.219 30.769 0.00 0.00 0.00 2.83
2262 2277 7.920682 TGGCTTTTCAAAATAGAGACTTGTTTC 59.079 33.333 0.00 0.00 0.00 2.78
2263 2278 8.138074 GGCTTTTCAAAATAGAGACTTGTTTCT 58.862 33.333 0.00 0.00 0.00 2.52
2264 2279 8.962111 GCTTTTCAAAATAGAGACTTGTTTCTG 58.038 33.333 4.36 0.00 0.00 3.02
2265 2280 9.455847 CTTTTCAAAATAGAGACTTGTTTCTGG 57.544 33.333 4.36 0.00 0.00 3.86
2266 2281 8.519799 TTTCAAAATAGAGACTTGTTTCTGGT 57.480 30.769 4.36 0.00 0.00 4.00
2267 2282 7.730364 TCAAAATAGAGACTTGTTTCTGGTC 57.270 36.000 4.36 0.00 0.00 4.02
2268 2283 6.710744 TCAAAATAGAGACTTGTTTCTGGTCC 59.289 38.462 4.36 0.00 0.00 4.46
2269 2284 5.825593 AATAGAGACTTGTTTCTGGTCCA 57.174 39.130 4.36 0.00 0.00 4.02
2270 2285 3.760580 AGAGACTTGTTTCTGGTCCAG 57.239 47.619 13.21 13.21 0.00 3.86
2271 2286 2.147150 GAGACTTGTTTCTGGTCCAGC 58.853 52.381 14.64 0.84 0.00 4.85
2272 2287 1.771255 AGACTTGTTTCTGGTCCAGCT 59.229 47.619 14.64 0.00 0.00 4.24
2273 2288 2.173569 AGACTTGTTTCTGGTCCAGCTT 59.826 45.455 14.64 0.00 0.00 3.74
2274 2289 2.291741 GACTTGTTTCTGGTCCAGCTTG 59.708 50.000 14.64 3.73 0.00 4.01
2275 2290 1.000938 CTTGTTTCTGGTCCAGCTTGC 60.001 52.381 14.64 5.00 0.00 4.01
2276 2291 0.106769 TGTTTCTGGTCCAGCTTGCA 60.107 50.000 14.64 7.47 0.00 4.08
2277 2292 0.595095 GTTTCTGGTCCAGCTTGCAG 59.405 55.000 14.64 0.00 0.00 4.41
2278 2293 0.538057 TTTCTGGTCCAGCTTGCAGG 60.538 55.000 14.64 0.00 0.00 4.85
2279 2294 2.360852 CTGGTCCAGCTTGCAGGG 60.361 66.667 5.79 1.01 0.00 4.45
2280 2295 3.177884 TGGTCCAGCTTGCAGGGT 61.178 61.111 0.00 0.00 0.00 4.34
2281 2296 2.360475 GGTCCAGCTTGCAGGGTC 60.360 66.667 0.00 0.00 0.00 4.46
2282 2297 2.753029 GTCCAGCTTGCAGGGTCT 59.247 61.111 0.00 0.00 0.00 3.85
2283 2298 1.553690 GGTCCAGCTTGCAGGGTCTA 61.554 60.000 0.00 0.00 0.00 2.59
2284 2299 0.324943 GTCCAGCTTGCAGGGTCTAA 59.675 55.000 0.00 0.00 0.00 2.10
2285 2300 0.324943 TCCAGCTTGCAGGGTCTAAC 59.675 55.000 0.00 0.00 0.00 2.34
2286 2301 0.036732 CCAGCTTGCAGGGTCTAACA 59.963 55.000 0.00 0.00 0.00 2.41
2287 2302 1.340405 CCAGCTTGCAGGGTCTAACAT 60.340 52.381 0.00 0.00 0.00 2.71
2288 2303 1.741706 CAGCTTGCAGGGTCTAACATG 59.258 52.381 0.00 0.00 0.00 3.21
2289 2304 1.630369 AGCTTGCAGGGTCTAACATGA 59.370 47.619 0.00 0.00 0.00 3.07
2290 2305 2.040278 AGCTTGCAGGGTCTAACATGAA 59.960 45.455 0.00 0.00 0.00 2.57
2291 2306 2.162408 GCTTGCAGGGTCTAACATGAAC 59.838 50.000 0.00 0.00 0.00 3.18
2292 2307 3.411446 CTTGCAGGGTCTAACATGAACA 58.589 45.455 0.00 0.00 0.00 3.18
2293 2308 3.057969 TGCAGGGTCTAACATGAACAG 57.942 47.619 0.00 0.00 0.00 3.16
2294 2309 2.371841 TGCAGGGTCTAACATGAACAGT 59.628 45.455 0.00 0.00 0.00 3.55
2295 2310 3.580895 TGCAGGGTCTAACATGAACAGTA 59.419 43.478 0.00 0.00 0.00 2.74
2296 2311 4.041075 TGCAGGGTCTAACATGAACAGTAA 59.959 41.667 0.00 0.00 0.00 2.24
2297 2312 4.392138 GCAGGGTCTAACATGAACAGTAAC 59.608 45.833 0.00 0.00 0.00 2.50
2298 2313 5.794894 CAGGGTCTAACATGAACAGTAACT 58.205 41.667 0.00 0.00 0.00 2.24
2299 2314 5.869888 CAGGGTCTAACATGAACAGTAACTC 59.130 44.000 0.00 0.00 0.00 3.01
2300 2315 5.780793 AGGGTCTAACATGAACAGTAACTCT 59.219 40.000 0.00 0.00 0.00 3.24
2301 2316 6.952358 AGGGTCTAACATGAACAGTAACTCTA 59.048 38.462 0.00 0.00 0.00 2.43
2302 2317 7.453752 AGGGTCTAACATGAACAGTAACTCTAA 59.546 37.037 0.00 0.00 0.00 2.10
2303 2318 7.544915 GGGTCTAACATGAACAGTAACTCTAAC 59.455 40.741 0.00 0.00 0.00 2.34
2304 2319 8.086522 GGTCTAACATGAACAGTAACTCTAACA 58.913 37.037 0.00 0.00 0.00 2.41
2305 2320 9.640963 GTCTAACATGAACAGTAACTCTAACAT 57.359 33.333 0.00 0.00 0.00 2.71
2309 2324 9.950680 AACATGAACAGTAACTCTAACATTTTG 57.049 29.630 0.00 0.00 0.00 2.44
2310 2325 8.076178 ACATGAACAGTAACTCTAACATTTTGC 58.924 33.333 0.00 0.00 0.00 3.68
2311 2326 6.966021 TGAACAGTAACTCTAACATTTTGCC 58.034 36.000 0.00 0.00 0.00 4.52
2312 2327 6.770785 TGAACAGTAACTCTAACATTTTGCCT 59.229 34.615 0.00 0.00 0.00 4.75
2313 2328 6.803154 ACAGTAACTCTAACATTTTGCCTC 57.197 37.500 0.00 0.00 0.00 4.70
2314 2329 6.534634 ACAGTAACTCTAACATTTTGCCTCT 58.465 36.000 0.00 0.00 0.00 3.69
2315 2330 6.998673 ACAGTAACTCTAACATTTTGCCTCTT 59.001 34.615 0.00 0.00 0.00 2.85
2316 2331 7.041098 ACAGTAACTCTAACATTTTGCCTCTTG 60.041 37.037 0.00 0.00 0.00 3.02
2317 2332 4.773323 ACTCTAACATTTTGCCTCTTGC 57.227 40.909 0.00 0.00 41.77 4.01
2318 2333 3.507622 ACTCTAACATTTTGCCTCTTGCC 59.492 43.478 0.00 0.00 40.16 4.52
2319 2334 3.760684 CTCTAACATTTTGCCTCTTGCCT 59.239 43.478 0.00 0.00 40.16 4.75
2320 2335 4.917385 TCTAACATTTTGCCTCTTGCCTA 58.083 39.130 0.00 0.00 40.16 3.93
2321 2336 5.321102 TCTAACATTTTGCCTCTTGCCTAA 58.679 37.500 0.00 0.00 40.16 2.69
2322 2337 5.951747 TCTAACATTTTGCCTCTTGCCTAAT 59.048 36.000 0.00 0.00 40.16 1.73
2323 2338 5.488262 AACATTTTGCCTCTTGCCTAATT 57.512 34.783 0.00 0.00 40.16 1.40
2324 2339 5.488262 ACATTTTGCCTCTTGCCTAATTT 57.512 34.783 0.00 0.00 40.16 1.82
2325 2340 6.603940 ACATTTTGCCTCTTGCCTAATTTA 57.396 33.333 0.00 0.00 40.16 1.40
2326 2341 6.633856 ACATTTTGCCTCTTGCCTAATTTAG 58.366 36.000 0.00 0.00 40.16 1.85
2327 2342 6.211384 ACATTTTGCCTCTTGCCTAATTTAGT 59.789 34.615 2.88 0.00 40.16 2.24
2328 2343 7.396055 ACATTTTGCCTCTTGCCTAATTTAGTA 59.604 33.333 2.88 0.00 40.16 1.82
2329 2344 7.954666 TTTTGCCTCTTGCCTAATTTAGTAT 57.045 32.000 2.88 0.00 40.16 2.12
2330 2345 7.954666 TTTGCCTCTTGCCTAATTTAGTATT 57.045 32.000 2.88 0.00 40.16 1.89
2331 2346 7.954666 TTGCCTCTTGCCTAATTTAGTATTT 57.045 32.000 2.88 0.00 40.16 1.40
2332 2347 7.954666 TGCCTCTTGCCTAATTTAGTATTTT 57.045 32.000 2.88 0.00 40.16 1.82
2333 2348 7.771183 TGCCTCTTGCCTAATTTAGTATTTTG 58.229 34.615 2.88 0.00 40.16 2.44
2334 2349 7.613801 TGCCTCTTGCCTAATTTAGTATTTTGA 59.386 33.333 2.88 0.00 40.16 2.69
2335 2350 8.633561 GCCTCTTGCCTAATTTAGTATTTTGAT 58.366 33.333 2.88 0.00 0.00 2.57
2341 2356 9.905713 TGCCTAATTTAGTATTTTGATCTGACT 57.094 29.630 2.88 0.00 0.00 3.41
2346 2361 6.662414 TTAGTATTTTGATCTGACTTGCGG 57.338 37.500 0.00 0.00 0.00 5.69
2347 2362 3.941483 AGTATTTTGATCTGACTTGCGGG 59.059 43.478 0.00 0.00 0.00 6.13
2348 2363 1.533625 TTTTGATCTGACTTGCGGGG 58.466 50.000 0.00 0.00 0.00 5.73
2349 2364 0.322456 TTTGATCTGACTTGCGGGGG 60.322 55.000 0.00 0.00 0.00 5.40
2350 2365 1.198094 TTGATCTGACTTGCGGGGGA 61.198 55.000 0.00 0.00 0.00 4.81
2351 2366 1.144936 GATCTGACTTGCGGGGGAG 59.855 63.158 0.00 0.00 0.00 4.30
2352 2367 1.613630 ATCTGACTTGCGGGGGAGT 60.614 57.895 0.00 0.00 0.00 3.85
2353 2368 1.201429 ATCTGACTTGCGGGGGAGTT 61.201 55.000 0.00 0.00 0.00 3.01
2354 2369 1.376037 CTGACTTGCGGGGGAGTTC 60.376 63.158 0.00 0.00 0.00 3.01
2355 2370 2.434359 GACTTGCGGGGGAGTTCG 60.434 66.667 0.00 0.00 0.00 3.95
2356 2371 2.920912 ACTTGCGGGGGAGTTCGA 60.921 61.111 0.00 0.00 0.00 3.71
2357 2372 2.240162 GACTTGCGGGGGAGTTCGAT 62.240 60.000 0.00 0.00 0.00 3.59
2358 2373 1.521681 CTTGCGGGGGAGTTCGATC 60.522 63.158 0.00 0.00 0.00 3.69
2359 2374 3.365291 TTGCGGGGGAGTTCGATCG 62.365 63.158 9.36 9.36 0.00 3.69
2360 2375 3.524606 GCGGGGGAGTTCGATCGA 61.525 66.667 15.15 15.15 0.00 3.59
2361 2376 3.072486 GCGGGGGAGTTCGATCGAA 62.072 63.158 25.96 25.96 0.00 3.71
2362 2377 1.514087 CGGGGGAGTTCGATCGAAA 59.486 57.895 30.61 13.34 35.75 3.46
2363 2378 0.104304 CGGGGGAGTTCGATCGAAAT 59.896 55.000 30.61 29.63 35.75 2.17
2364 2379 1.583054 GGGGGAGTTCGATCGAAATG 58.417 55.000 32.57 0.00 35.75 2.32
2365 2380 1.138266 GGGGGAGTTCGATCGAAATGA 59.862 52.381 32.57 9.44 35.75 2.57
2366 2381 2.202566 GGGGAGTTCGATCGAAATGAC 58.797 52.381 32.57 23.57 35.75 3.06
2367 2382 2.418197 GGGGAGTTCGATCGAAATGACA 60.418 50.000 32.57 8.24 35.75 3.58
2368 2383 3.259064 GGGAGTTCGATCGAAATGACAA 58.741 45.455 32.57 7.45 35.75 3.18
2369 2384 3.682858 GGGAGTTCGATCGAAATGACAAA 59.317 43.478 32.57 6.65 35.75 2.83
2370 2385 4.153475 GGGAGTTCGATCGAAATGACAAAA 59.847 41.667 32.57 5.87 35.75 2.44
2371 2386 5.080068 GGAGTTCGATCGAAATGACAAAAC 58.920 41.667 32.57 17.55 35.75 2.43
2372 2387 5.030874 AGTTCGATCGAAATGACAAAACC 57.969 39.130 30.61 14.70 35.75 3.27
2373 2388 4.755123 AGTTCGATCGAAATGACAAAACCT 59.245 37.500 30.61 16.61 35.75 3.50
2374 2389 4.921470 TCGATCGAAATGACAAAACCTC 57.079 40.909 16.99 0.00 0.00 3.85
2375 2390 4.566004 TCGATCGAAATGACAAAACCTCT 58.434 39.130 16.99 0.00 0.00 3.69
2376 2391 4.994852 TCGATCGAAATGACAAAACCTCTT 59.005 37.500 16.99 0.00 0.00 2.85
2377 2392 6.160684 TCGATCGAAATGACAAAACCTCTTA 58.839 36.000 16.99 0.00 0.00 2.10
2378 2393 6.816640 TCGATCGAAATGACAAAACCTCTTAT 59.183 34.615 16.99 0.00 0.00 1.73
2379 2394 7.333423 TCGATCGAAATGACAAAACCTCTTATT 59.667 33.333 16.99 0.00 0.00 1.40
2380 2395 7.962918 CGATCGAAATGACAAAACCTCTTATTT 59.037 33.333 10.26 0.00 0.00 1.40
2381 2396 9.278734 GATCGAAATGACAAAACCTCTTATTTC 57.721 33.333 0.00 0.00 32.56 2.17
2382 2397 7.590279 TCGAAATGACAAAACCTCTTATTTCC 58.410 34.615 0.00 0.00 32.36 3.13
2383 2398 6.523201 CGAAATGACAAAACCTCTTATTTCCG 59.477 38.462 0.00 0.00 32.36 4.30
2384 2399 5.897377 ATGACAAAACCTCTTATTTCCGG 57.103 39.130 0.00 0.00 0.00 5.14
2385 2400 4.975631 TGACAAAACCTCTTATTTCCGGA 58.024 39.130 0.00 0.00 0.00 5.14
2386 2401 5.378332 TGACAAAACCTCTTATTTCCGGAA 58.622 37.500 14.35 14.35 0.00 4.30
2387 2402 6.007703 TGACAAAACCTCTTATTTCCGGAAT 58.992 36.000 19.62 10.81 0.00 3.01
2388 2403 6.492087 TGACAAAACCTCTTATTTCCGGAATT 59.508 34.615 19.62 17.22 0.00 2.17
2389 2404 7.666388 TGACAAAACCTCTTATTTCCGGAATTA 59.334 33.333 19.62 16.08 0.00 1.40
2390 2405 8.411991 ACAAAACCTCTTATTTCCGGAATTAA 57.588 30.769 19.62 22.00 0.00 1.40
2391 2406 8.862085 ACAAAACCTCTTATTTCCGGAATTAAA 58.138 29.630 24.36 15.82 0.00 1.52
2392 2407 9.869757 CAAAACCTCTTATTTCCGGAATTAAAT 57.130 29.630 24.36 15.85 0.00 1.40
2394 2409 9.869757 AAACCTCTTATTTCCGGAATTAAATTG 57.130 29.630 24.36 18.60 0.00 2.32
2395 2410 7.489160 ACCTCTTATTTCCGGAATTAAATTGC 58.511 34.615 24.36 0.00 0.00 3.56
2396 2411 7.123547 ACCTCTTATTTCCGGAATTAAATTGCA 59.876 33.333 24.36 7.32 0.00 4.08
2397 2412 7.978975 CCTCTTATTTCCGGAATTAAATTGCAA 59.021 33.333 24.36 0.00 0.00 4.08
2398 2413 9.364989 CTCTTATTTCCGGAATTAAATTGCAAA 57.635 29.630 24.36 6.20 0.00 3.68
2399 2414 9.712305 TCTTATTTCCGGAATTAAATTGCAAAA 57.288 25.926 24.36 6.02 0.00 2.44
2470 2485 8.789881 TTTACTTTCACATAAACAATCAACCG 57.210 30.769 0.00 0.00 0.00 4.44
2471 2486 5.219633 ACTTTCACATAAACAATCAACCGC 58.780 37.500 0.00 0.00 0.00 5.68
2472 2487 4.837896 TTCACATAAACAATCAACCGCA 57.162 36.364 0.00 0.00 0.00 5.69
2473 2488 4.837896 TCACATAAACAATCAACCGCAA 57.162 36.364 0.00 0.00 0.00 4.85
2474 2489 5.188327 TCACATAAACAATCAACCGCAAA 57.812 34.783 0.00 0.00 0.00 3.68
2475 2490 4.979197 TCACATAAACAATCAACCGCAAAC 59.021 37.500 0.00 0.00 0.00 2.93
2476 2491 4.149747 CACATAAACAATCAACCGCAAACC 59.850 41.667 0.00 0.00 0.00 3.27
2477 2492 2.969628 AAACAATCAACCGCAAACCA 57.030 40.000 0.00 0.00 0.00 3.67
2478 2493 2.969628 AACAATCAACCGCAAACCAA 57.030 40.000 0.00 0.00 0.00 3.67
2479 2494 2.969628 ACAATCAACCGCAAACCAAA 57.030 40.000 0.00 0.00 0.00 3.28
2480 2495 3.252974 ACAATCAACCGCAAACCAAAA 57.747 38.095 0.00 0.00 0.00 2.44
2481 2496 3.600388 ACAATCAACCGCAAACCAAAAA 58.400 36.364 0.00 0.00 0.00 1.94
2482 2497 3.620821 ACAATCAACCGCAAACCAAAAAG 59.379 39.130 0.00 0.00 0.00 2.27
2483 2498 1.646189 TCAACCGCAAACCAAAAAGC 58.354 45.000 0.00 0.00 0.00 3.51
2484 2499 1.066858 TCAACCGCAAACCAAAAAGCA 60.067 42.857 0.00 0.00 0.00 3.91
2485 2500 1.939255 CAACCGCAAACCAAAAAGCAT 59.061 42.857 0.00 0.00 0.00 3.79
2486 2501 1.580815 ACCGCAAACCAAAAAGCATG 58.419 45.000 0.00 0.00 0.00 4.06
2487 2502 0.867086 CCGCAAACCAAAAAGCATGG 59.133 50.000 0.00 0.00 43.84 3.66
2488 2503 0.867086 CGCAAACCAAAAAGCATGGG 59.133 50.000 0.00 0.00 42.48 4.00
2489 2504 1.237533 GCAAACCAAAAAGCATGGGG 58.762 50.000 0.00 0.00 42.48 4.96
2490 2505 1.894881 CAAACCAAAAAGCATGGGGG 58.105 50.000 0.00 0.00 42.48 5.40
2491 2506 1.419387 CAAACCAAAAAGCATGGGGGA 59.581 47.619 0.00 0.00 42.48 4.81
2492 2507 1.351076 AACCAAAAAGCATGGGGGAG 58.649 50.000 0.00 0.00 42.48 4.30
2493 2508 0.545071 ACCAAAAAGCATGGGGGAGG 60.545 55.000 0.00 0.00 42.48 4.30
2494 2509 0.545071 CCAAAAAGCATGGGGGAGGT 60.545 55.000 0.00 0.00 34.15 3.85
2495 2510 1.351076 CAAAAAGCATGGGGGAGGTT 58.649 50.000 0.00 0.00 0.00 3.50
2496 2511 1.699083 CAAAAAGCATGGGGGAGGTTT 59.301 47.619 0.00 0.00 37.07 3.27
2497 2512 1.351076 AAAAGCATGGGGGAGGTTTG 58.649 50.000 0.00 0.00 35.81 2.93
2498 2513 1.194121 AAAGCATGGGGGAGGTTTGC 61.194 55.000 0.00 0.00 34.52 3.68
2499 2514 3.451894 GCATGGGGGAGGTTTGCG 61.452 66.667 0.00 0.00 0.00 4.85
2500 2515 2.755469 CATGGGGGAGGTTTGCGG 60.755 66.667 0.00 0.00 0.00 5.69
2501 2516 2.938798 ATGGGGGAGGTTTGCGGA 60.939 61.111 0.00 0.00 0.00 5.54
2502 2517 2.983879 ATGGGGGAGGTTTGCGGAG 61.984 63.158 0.00 0.00 0.00 4.63
2520 2535 3.252484 CGGTCCGGACGCGATTTC 61.252 66.667 30.00 15.13 0.00 2.17
2521 2536 2.183555 GGTCCGGACGCGATTTCT 59.816 61.111 27.68 0.00 0.00 2.52
2522 2537 1.877165 GGTCCGGACGCGATTTCTC 60.877 63.158 27.68 7.22 0.00 2.87
2523 2538 1.877165 GTCCGGACGCGATTTCTCC 60.877 63.158 20.85 8.07 0.00 3.71
2524 2539 2.585247 CCGGACGCGATTTCTCCC 60.585 66.667 15.93 0.78 0.00 4.30
2525 2540 2.954868 CGGACGCGATTTCTCCCG 60.955 66.667 15.93 9.68 0.00 5.14
2532 2547 3.975992 CGATTTCTCCCGCAAACTG 57.024 52.632 0.00 0.00 0.00 3.16
2533 2548 1.438651 CGATTTCTCCCGCAAACTGA 58.561 50.000 0.00 0.00 0.00 3.41
2534 2549 1.804151 CGATTTCTCCCGCAAACTGAA 59.196 47.619 0.00 0.00 0.00 3.02
2535 2550 2.159653 CGATTTCTCCCGCAAACTGAAG 60.160 50.000 0.00 0.00 0.00 3.02
2536 2551 2.631160 TTTCTCCCGCAAACTGAAGA 57.369 45.000 0.00 0.00 0.00 2.87
2537 2552 1.878953 TTCTCCCGCAAACTGAAGAC 58.121 50.000 0.00 0.00 0.00 3.01
2538 2553 0.756294 TCTCCCGCAAACTGAAGACA 59.244 50.000 0.00 0.00 0.00 3.41
2539 2554 1.140052 TCTCCCGCAAACTGAAGACAA 59.860 47.619 0.00 0.00 0.00 3.18
2540 2555 1.946768 CTCCCGCAAACTGAAGACAAA 59.053 47.619 0.00 0.00 0.00 2.83
2541 2556 1.673920 TCCCGCAAACTGAAGACAAAC 59.326 47.619 0.00 0.00 0.00 2.93
2542 2557 1.596954 CCCGCAAACTGAAGACAAACG 60.597 52.381 0.00 0.00 0.00 3.60
2543 2558 1.063469 CCGCAAACTGAAGACAAACGT 59.937 47.619 0.00 0.00 0.00 3.99
2544 2559 2.101125 CGCAAACTGAAGACAAACGTG 58.899 47.619 0.00 0.00 0.00 4.49
2545 2560 2.450160 GCAAACTGAAGACAAACGTGG 58.550 47.619 0.00 0.00 0.00 4.94
2546 2561 2.794631 GCAAACTGAAGACAAACGTGGG 60.795 50.000 0.00 0.00 0.00 4.61
2547 2562 1.675552 AACTGAAGACAAACGTGGGG 58.324 50.000 0.00 0.00 0.00 4.96
2548 2563 0.179029 ACTGAAGACAAACGTGGGGG 60.179 55.000 0.00 0.00 0.00 5.40
2549 2564 0.107831 CTGAAGACAAACGTGGGGGA 59.892 55.000 0.00 0.00 0.00 4.81
2550 2565 0.107831 TGAAGACAAACGTGGGGGAG 59.892 55.000 0.00 0.00 0.00 4.30
2551 2566 0.605589 GAAGACAAACGTGGGGGAGG 60.606 60.000 0.00 0.00 0.00 4.30
2552 2567 1.350310 AAGACAAACGTGGGGGAGGT 61.350 55.000 0.00 0.00 0.00 3.85
2553 2568 1.149854 GACAAACGTGGGGGAGGTT 59.850 57.895 0.00 0.00 34.04 3.50
2554 2569 0.466739 GACAAACGTGGGGGAGGTTT 60.467 55.000 0.00 0.00 42.14 3.27
2555 2570 4.591038 AAACGTGGGGGAGGTTTG 57.409 55.556 0.00 0.00 40.36 2.93
2556 2571 1.830847 AAACGTGGGGGAGGTTTGC 60.831 57.895 0.00 0.00 40.36 3.68
2557 2572 4.636435 ACGTGGGGGAGGTTTGCG 62.636 66.667 0.00 0.00 0.00 4.85
2561 2576 4.426313 GGGGGAGGTTTGCGGGAG 62.426 72.222 0.00 0.00 0.00 4.30
2562 2577 3.647771 GGGGAGGTTTGCGGGAGT 61.648 66.667 0.00 0.00 0.00 3.85
2563 2578 2.434774 GGGAGGTTTGCGGGAGTT 59.565 61.111 0.00 0.00 0.00 3.01
2564 2579 1.228459 GGGAGGTTTGCGGGAGTTT 60.228 57.895 0.00 0.00 0.00 2.66
2565 2580 1.524008 GGGAGGTTTGCGGGAGTTTG 61.524 60.000 0.00 0.00 0.00 2.93
2566 2581 1.524008 GGAGGTTTGCGGGAGTTTGG 61.524 60.000 0.00 0.00 0.00 3.28
2567 2582 0.536460 GAGGTTTGCGGGAGTTTGGA 60.536 55.000 0.00 0.00 0.00 3.53
2568 2583 0.822121 AGGTTTGCGGGAGTTTGGAC 60.822 55.000 0.00 0.00 0.00 4.02
2569 2584 1.104577 GGTTTGCGGGAGTTTGGACA 61.105 55.000 0.00 0.00 0.00 4.02
2570 2585 0.030235 GTTTGCGGGAGTTTGGACAC 59.970 55.000 0.00 0.00 0.00 3.67
2571 2586 1.440938 TTTGCGGGAGTTTGGACACG 61.441 55.000 0.00 0.00 0.00 4.49
2572 2587 3.723348 GCGGGAGTTTGGACACGC 61.723 66.667 0.00 0.00 38.05 5.34
2573 2588 3.411351 CGGGAGTTTGGACACGCG 61.411 66.667 3.53 3.53 43.55 6.01
2574 2589 2.029964 GGGAGTTTGGACACGCGA 59.970 61.111 15.93 0.00 0.00 5.87
2575 2590 1.595929 GGGAGTTTGGACACGCGAA 60.596 57.895 15.93 0.00 0.00 4.70
2576 2591 1.161563 GGGAGTTTGGACACGCGAAA 61.162 55.000 15.93 0.00 0.00 3.46
2577 2592 0.041576 GGAGTTTGGACACGCGAAAC 60.042 55.000 15.93 12.93 43.15 2.78
2578 2593 0.382636 GAGTTTGGACACGCGAAACG 60.383 55.000 15.93 0.00 46.10 3.60
2589 2604 2.386868 CGAAACGTCGCTCTTCGC 59.613 61.111 6.41 0.00 41.08 4.70
2590 2605 2.081212 CGAAACGTCGCTCTTCGCT 61.081 57.895 6.41 0.00 41.08 4.93
2591 2606 1.697207 GAAACGTCGCTCTTCGCTC 59.303 57.895 0.00 0.00 38.27 5.03
2592 2607 1.675524 GAAACGTCGCTCTTCGCTCC 61.676 60.000 0.00 0.00 38.27 4.70
2593 2608 3.628280 AACGTCGCTCTTCGCTCCC 62.628 63.158 0.00 0.00 38.27 4.30
2594 2609 4.856607 CGTCGCTCTTCGCTCCCC 62.857 72.222 0.00 0.00 38.27 4.81
2595 2610 3.453679 GTCGCTCTTCGCTCCCCT 61.454 66.667 0.00 0.00 38.27 4.79
2596 2611 3.452786 TCGCTCTTCGCTCCCCTG 61.453 66.667 0.00 0.00 38.27 4.45
2598 2613 4.847444 GCTCTTCGCTCCCCTGCC 62.847 72.222 0.00 0.00 35.14 4.85
2599 2614 4.168291 CTCTTCGCTCCCCTGCCC 62.168 72.222 0.00 0.00 0.00 5.36
2601 2616 4.785453 CTTCGCTCCCCTGCCCAC 62.785 72.222 0.00 0.00 0.00 4.61
2606 2621 3.589542 CTCCCCTGCCCACCCAAA 61.590 66.667 0.00 0.00 0.00 3.28
2607 2622 3.113477 TCCCCTGCCCACCCAAAA 61.113 61.111 0.00 0.00 0.00 2.44
2608 2623 2.604382 CCCCTGCCCACCCAAAAG 60.604 66.667 0.00 0.00 0.00 2.27
2609 2624 2.604382 CCCTGCCCACCCAAAAGG 60.604 66.667 0.00 0.00 43.78 3.11
2610 2625 2.525592 CCTGCCCACCCAAAAGGA 59.474 61.111 0.00 0.00 39.89 3.36
2611 2626 1.152355 CCTGCCCACCCAAAAGGAA 60.152 57.895 0.00 0.00 39.89 3.36
2612 2627 1.187567 CCTGCCCACCCAAAAGGAAG 61.188 60.000 0.00 0.00 39.89 3.46
2613 2628 1.152355 TGCCCACCCAAAAGGAAGG 60.152 57.895 0.00 0.00 39.89 3.46
2614 2629 1.152333 GCCCACCCAAAAGGAAGGT 60.152 57.895 0.00 0.00 39.89 3.50
2615 2630 1.185618 GCCCACCCAAAAGGAAGGTC 61.186 60.000 0.00 0.00 39.89 3.85
2616 2631 0.893727 CCCACCCAAAAGGAAGGTCG 60.894 60.000 0.00 0.00 39.89 4.79
2617 2632 0.109723 CCACCCAAAAGGAAGGTCGA 59.890 55.000 0.00 0.00 39.89 4.20
2618 2633 1.523758 CACCCAAAAGGAAGGTCGAG 58.476 55.000 0.00 0.00 39.89 4.04
2619 2634 0.250770 ACCCAAAAGGAAGGTCGAGC 60.251 55.000 6.48 6.48 39.89 5.03
2620 2635 0.960861 CCCAAAAGGAAGGTCGAGCC 60.961 60.000 11.73 3.31 38.24 4.70
2621 2636 0.960861 CCAAAAGGAAGGTCGAGCCC 60.961 60.000 11.73 6.39 38.26 5.19
2622 2637 1.003718 AAAAGGAAGGTCGAGCCCG 60.004 57.895 11.73 0.00 38.26 6.13
2623 2638 3.607370 AAAGGAAGGTCGAGCCCGC 62.607 63.158 11.73 0.48 38.26 6.13
2636 2651 4.054825 CCCGCGCTTTTGTGGCAT 62.055 61.111 5.56 0.00 38.22 4.40
2637 2652 2.504681 CCGCGCTTTTGTGGCATC 60.505 61.111 5.56 0.00 31.81 3.91
2638 2653 2.504681 CGCGCTTTTGTGGCATCC 60.505 61.111 5.56 0.00 0.00 3.51
2639 2654 2.125952 GCGCTTTTGTGGCATCCC 60.126 61.111 0.00 0.00 0.00 3.85
2640 2655 2.929903 GCGCTTTTGTGGCATCCCA 61.930 57.895 0.00 0.00 39.32 4.37
2649 2664 3.529948 TGGCATCCCACACTGTTTT 57.470 47.368 0.00 0.00 35.79 2.43
2650 2665 1.327303 TGGCATCCCACACTGTTTTC 58.673 50.000 0.00 0.00 35.79 2.29
2651 2666 0.240945 GGCATCCCACACTGTTTTCG 59.759 55.000 0.00 0.00 0.00 3.46
2652 2667 0.951558 GCATCCCACACTGTTTTCGT 59.048 50.000 0.00 0.00 0.00 3.85
2653 2668 1.334960 GCATCCCACACTGTTTTCGTG 60.335 52.381 0.00 0.00 38.32 4.35
2654 2669 0.951558 ATCCCACACTGTTTTCGTGC 59.048 50.000 0.00 0.00 35.84 5.34
2655 2670 1.098712 TCCCACACTGTTTTCGTGCC 61.099 55.000 0.00 0.00 35.84 5.01
2656 2671 1.380403 CCCACACTGTTTTCGTGCCA 61.380 55.000 0.00 0.00 35.84 4.92
2657 2672 0.453793 CCACACTGTTTTCGTGCCAA 59.546 50.000 0.00 0.00 35.84 4.52
2658 2673 1.135257 CCACACTGTTTTCGTGCCAAA 60.135 47.619 0.00 0.00 35.84 3.28
2659 2674 2.600731 CACACTGTTTTCGTGCCAAAA 58.399 42.857 0.00 0.00 35.84 2.44
2660 2675 3.186119 CACACTGTTTTCGTGCCAAAAT 58.814 40.909 0.00 0.00 35.84 1.82
2661 2676 3.242712 CACACTGTTTTCGTGCCAAAATC 59.757 43.478 0.00 0.00 35.84 2.17
2662 2677 2.794350 CACTGTTTTCGTGCCAAAATCC 59.206 45.455 0.00 0.00 0.00 3.01
2663 2678 2.223947 ACTGTTTTCGTGCCAAAATCCC 60.224 45.455 0.00 0.00 0.00 3.85
2664 2679 2.035632 TGTTTTCGTGCCAAAATCCCT 58.964 42.857 0.00 0.00 0.00 4.20
2665 2680 2.035321 TGTTTTCGTGCCAAAATCCCTC 59.965 45.455 0.00 0.00 0.00 4.30
2666 2681 1.988293 TTTCGTGCCAAAATCCCTCA 58.012 45.000 0.00 0.00 0.00 3.86
2667 2682 1.243902 TTCGTGCCAAAATCCCTCAC 58.756 50.000 0.00 0.00 0.00 3.51
2668 2683 0.400213 TCGTGCCAAAATCCCTCACT 59.600 50.000 0.00 0.00 0.00 3.41
2669 2684 0.804989 CGTGCCAAAATCCCTCACTC 59.195 55.000 0.00 0.00 0.00 3.51
2670 2685 1.611673 CGTGCCAAAATCCCTCACTCT 60.612 52.381 0.00 0.00 0.00 3.24
2671 2686 2.087646 GTGCCAAAATCCCTCACTCTC 58.912 52.381 0.00 0.00 0.00 3.20
2672 2687 1.988107 TGCCAAAATCCCTCACTCTCT 59.012 47.619 0.00 0.00 0.00 3.10
2673 2688 2.376518 TGCCAAAATCCCTCACTCTCTT 59.623 45.455 0.00 0.00 0.00 2.85
2674 2689 3.013219 GCCAAAATCCCTCACTCTCTTC 58.987 50.000 0.00 0.00 0.00 2.87
2675 2690 3.308046 GCCAAAATCCCTCACTCTCTTCT 60.308 47.826 0.00 0.00 0.00 2.85
2676 2691 4.809007 GCCAAAATCCCTCACTCTCTTCTT 60.809 45.833 0.00 0.00 0.00 2.52
2677 2692 4.940654 CCAAAATCCCTCACTCTCTTCTTC 59.059 45.833 0.00 0.00 0.00 2.87
2678 2693 4.835284 AAATCCCTCACTCTCTTCTTCC 57.165 45.455 0.00 0.00 0.00 3.46
2679 2694 3.481559 ATCCCTCACTCTCTTCTTCCA 57.518 47.619 0.00 0.00 0.00 3.53
2680 2695 2.530701 TCCCTCACTCTCTTCTTCCAC 58.469 52.381 0.00 0.00 0.00 4.02
2681 2696 2.110899 TCCCTCACTCTCTTCTTCCACT 59.889 50.000 0.00 0.00 0.00 4.00
2682 2697 2.495669 CCCTCACTCTCTTCTTCCACTC 59.504 54.545 0.00 0.00 0.00 3.51
2683 2698 2.495669 CCTCACTCTCTTCTTCCACTCC 59.504 54.545 0.00 0.00 0.00 3.85
2684 2699 2.495669 CTCACTCTCTTCTTCCACTCCC 59.504 54.545 0.00 0.00 0.00 4.30
2685 2700 1.552792 CACTCTCTTCTTCCACTCCCC 59.447 57.143 0.00 0.00 0.00 4.81
2686 2701 0.820871 CTCTCTTCTTCCACTCCCCG 59.179 60.000 0.00 0.00 0.00 5.73
2687 2702 1.219393 CTCTTCTTCCACTCCCCGC 59.781 63.158 0.00 0.00 0.00 6.13
2688 2703 2.245438 CTCTTCTTCCACTCCCCGCC 62.245 65.000 0.00 0.00 0.00 6.13
2689 2704 3.665675 CTTCTTCCACTCCCCGCCG 62.666 68.421 0.00 0.00 0.00 6.46
2704 2719 2.897350 CCGCTCTCCGCCCAAATC 60.897 66.667 0.00 0.00 35.03 2.17
2705 2720 2.897350 CGCTCTCCGCCCAAATCC 60.897 66.667 0.00 0.00 34.21 3.01
2706 2721 2.517166 GCTCTCCGCCCAAATCCC 60.517 66.667 0.00 0.00 0.00 3.85
2707 2722 2.203070 CTCTCCGCCCAAATCCCG 60.203 66.667 0.00 0.00 0.00 5.14
2708 2723 4.483243 TCTCCGCCCAAATCCCGC 62.483 66.667 0.00 0.00 0.00 6.13
2709 2724 4.489771 CTCCGCCCAAATCCCGCT 62.490 66.667 0.00 0.00 0.00 5.52
2710 2725 4.483243 TCCGCCCAAATCCCGCTC 62.483 66.667 0.00 0.00 0.00 5.03
2711 2726 4.489771 CCGCCCAAATCCCGCTCT 62.490 66.667 0.00 0.00 0.00 4.09
2712 2727 2.438434 CGCCCAAATCCCGCTCTT 60.438 61.111 0.00 0.00 0.00 2.85
2713 2728 2.046285 CGCCCAAATCCCGCTCTTT 61.046 57.895 0.00 0.00 0.00 2.52
2714 2729 1.595093 CGCCCAAATCCCGCTCTTTT 61.595 55.000 0.00 0.00 0.00 2.27
2715 2730 0.173481 GCCCAAATCCCGCTCTTTTC 59.827 55.000 0.00 0.00 0.00 2.29
2716 2731 1.839424 CCCAAATCCCGCTCTTTTCT 58.161 50.000 0.00 0.00 0.00 2.52
2717 2732 1.745653 CCCAAATCCCGCTCTTTTCTC 59.254 52.381 0.00 0.00 0.00 2.87
2718 2733 1.745653 CCAAATCCCGCTCTTTTCTCC 59.254 52.381 0.00 0.00 0.00 3.71
2719 2734 1.745653 CAAATCCCGCTCTTTTCTCCC 59.254 52.381 0.00 0.00 0.00 4.30
2720 2735 0.991920 AATCCCGCTCTTTTCTCCCA 59.008 50.000 0.00 0.00 0.00 4.37
2721 2736 0.253327 ATCCCGCTCTTTTCTCCCAC 59.747 55.000 0.00 0.00 0.00 4.61
2722 2737 1.377333 CCCGCTCTTTTCTCCCACC 60.377 63.158 0.00 0.00 0.00 4.61
2723 2738 1.377333 CCGCTCTTTTCTCCCACCC 60.377 63.158 0.00 0.00 0.00 4.61
2724 2739 1.679898 CGCTCTTTTCTCCCACCCT 59.320 57.895 0.00 0.00 0.00 4.34
2725 2740 0.391793 CGCTCTTTTCTCCCACCCTC 60.392 60.000 0.00 0.00 0.00 4.30
2726 2741 0.988063 GCTCTTTTCTCCCACCCTCT 59.012 55.000 0.00 0.00 0.00 3.69
2727 2742 1.065782 GCTCTTTTCTCCCACCCTCTC 60.066 57.143 0.00 0.00 0.00 3.20
2728 2743 1.557371 CTCTTTTCTCCCACCCTCTCC 59.443 57.143 0.00 0.00 0.00 3.71
2729 2744 1.152271 TCTTTTCTCCCACCCTCTCCT 59.848 52.381 0.00 0.00 0.00 3.69
2730 2745 1.988846 CTTTTCTCCCACCCTCTCCTT 59.011 52.381 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
480 482 5.112686 GTGTCACCAAGATCAATCTAGGAC 58.887 45.833 0.00 0.95 35.76 3.85
575 577 1.092345 GGAGGAAGAATCGGTGCAGC 61.092 60.000 5.64 5.64 0.00 5.25
584 586 2.780592 GGGCTTAAGGAGGAGGAAGAAT 59.219 50.000 4.29 0.00 0.00 2.40
601 603 3.083997 GGTCATCGGTGAGGGGCT 61.084 66.667 0.00 0.00 34.36 5.19
604 606 2.494918 GACGGTCATCGGTGAGGG 59.505 66.667 0.00 0.00 44.45 4.30
634 636 1.941294 CGCAGTGTACTAGGAGACGAT 59.059 52.381 0.00 0.00 0.00 3.73
678 680 6.435292 AAGTGGTCCAAGTACAAGAACTAT 57.565 37.500 0.00 0.00 0.00 2.12
716 718 2.363795 AGGCCGTCTCCGATGGAA 60.364 61.111 6.30 0.00 40.94 3.53
717 719 2.928988 ATCAGGCCGTCTCCGATGGA 62.929 60.000 6.30 0.00 40.94 3.41
718 720 2.032860 AATCAGGCCGTCTCCGATGG 62.033 60.000 0.00 0.00 41.35 3.51
720 722 1.043116 TCAATCAGGCCGTCTCCGAT 61.043 55.000 0.00 0.00 35.63 4.18
738 740 0.820891 ACATCATTCGCTGGGCCATC 60.821 55.000 6.72 0.37 0.00 3.51
795 797 1.139654 ACTGCACAAGAGCTGAAGACA 59.860 47.619 0.00 0.00 37.23 3.41
854 856 2.171237 TCGAACTTCAGATCCATGCCAT 59.829 45.455 0.00 0.00 0.00 4.40
855 857 1.554617 TCGAACTTCAGATCCATGCCA 59.445 47.619 0.00 0.00 0.00 4.92
864 866 1.000163 GAGGTGTGCTCGAACTTCAGA 60.000 52.381 0.00 0.00 0.00 3.27
866 868 0.033504 GGAGGTGTGCTCGAACTTCA 59.966 55.000 0.38 0.00 0.00 3.02
916 918 2.995574 CTTCCTCGGGTGGTCGGT 60.996 66.667 0.00 0.00 0.00 4.69
1045 1047 0.981183 CACCCTGCCCAACACTACTA 59.019 55.000 0.00 0.00 0.00 1.82
1053 1055 4.104102 CCTATATTTACTCACCCTGCCCAA 59.896 45.833 0.00 0.00 0.00 4.12
1224 1228 1.342174 CTGCTTGCCCTTGTTGTCAAT 59.658 47.619 0.00 0.00 32.82 2.57
1307 1315 2.032528 TCGTTGCTTGCCTCAGGG 59.967 61.111 0.00 0.00 0.00 4.45
1316 1324 2.738521 ATGCGCTCGTCGTTGCTT 60.739 55.556 9.73 1.57 41.07 3.91
1317 1325 3.481903 CATGCGCTCGTCGTTGCT 61.482 61.111 9.73 0.00 41.07 3.91
1376 1388 0.624206 TTGGGCCATCCTCCTCATGA 60.624 55.000 7.26 0.00 36.20 3.07
1442 1455 0.038166 TTGTGAAGTCCAGGGGCATC 59.962 55.000 0.00 0.00 0.00 3.91
1460 1473 1.868997 CACCGCGATGAAGTGCTTT 59.131 52.632 8.23 0.00 0.00 3.51
1511 1524 0.393537 CCATCACCTTCCAGGAGCAC 60.394 60.000 0.00 0.00 37.67 4.40
1546 1559 1.566211 CTGATCCAGGGTCACTCTGT 58.434 55.000 3.35 0.00 0.00 3.41
1583 1596 3.369147 CGATCTTGATATGATGAACGGCC 59.631 47.826 0.00 0.00 0.00 6.13
1595 1608 3.895041 TCACCATGTAGCCGATCTTGATA 59.105 43.478 0.00 0.00 0.00 2.15
1665 1678 2.292267 GACGACCTCAATGCCATCATT 58.708 47.619 0.00 0.00 43.31 2.57
1784 1798 7.750458 CACTTCATAACAGTTCAACGCATAAAT 59.250 33.333 0.00 0.00 0.00 1.40
1824 1838 9.922305 GATCAACTACTTAACAGCATAATTCAC 57.078 33.333 0.00 0.00 0.00 3.18
1871 1885 5.102953 ACCATGTAGCACACATCATAAGT 57.897 39.130 1.26 0.00 44.99 2.24
1909 1923 1.405121 GGCTAGTTGGTGAGGTTACCG 60.405 57.143 0.00 0.00 43.87 4.02
1941 1955 0.321996 TATGCAACGCCTGGTGTGTA 59.678 50.000 14.59 8.20 36.45 2.90
2059 2074 2.101249 CACCATCTGCAAGTTGTTTGGT 59.899 45.455 4.48 9.49 37.26 3.67
2133 2148 7.582667 TGATTGCAGTAGTGAATAGTAGCTA 57.417 36.000 0.42 0.00 0.00 3.32
2141 2156 4.613622 GCGTGTTTGATTGCAGTAGTGAAT 60.614 41.667 0.42 0.00 0.00 2.57
2155 2170 1.077357 ACACAAGGGGCGTGTTTGA 60.077 52.632 0.00 0.00 45.12 2.69
2172 2187 1.098050 GAGCAATGTGACCATGGGAC 58.902 55.000 18.09 12.80 0.00 4.46
2173 2188 0.392863 CGAGCAATGTGACCATGGGA 60.393 55.000 18.09 0.00 0.00 4.37
2174 2189 1.378882 CCGAGCAATGTGACCATGGG 61.379 60.000 18.09 0.00 0.00 4.00
2175 2190 1.378882 CCCGAGCAATGTGACCATGG 61.379 60.000 11.19 11.19 0.00 3.66
2176 2191 0.677731 ACCCGAGCAATGTGACCATG 60.678 55.000 0.00 0.00 0.00 3.66
2177 2192 0.038166 AACCCGAGCAATGTGACCAT 59.962 50.000 0.00 0.00 0.00 3.55
2178 2193 0.179004 AAACCCGAGCAATGTGACCA 60.179 50.000 0.00 0.00 0.00 4.02
2179 2194 0.958822 AAAACCCGAGCAATGTGACC 59.041 50.000 0.00 0.00 0.00 4.02
2180 2195 1.880027 AGAAAACCCGAGCAATGTGAC 59.120 47.619 0.00 0.00 0.00 3.67
2181 2196 2.151202 GAGAAAACCCGAGCAATGTGA 58.849 47.619 0.00 0.00 0.00 3.58
2182 2197 2.154462 AGAGAAAACCCGAGCAATGTG 58.846 47.619 0.00 0.00 0.00 3.21
2183 2198 2.039084 AGAGAGAAAACCCGAGCAATGT 59.961 45.455 0.00 0.00 0.00 2.71
2184 2199 2.704572 AGAGAGAAAACCCGAGCAATG 58.295 47.619 0.00 0.00 0.00 2.82
2185 2200 4.762289 ATAGAGAGAAAACCCGAGCAAT 57.238 40.909 0.00 0.00 0.00 3.56
2186 2201 4.553330 AATAGAGAGAAAACCCGAGCAA 57.447 40.909 0.00 0.00 0.00 3.91
2187 2202 4.020573 TCAAATAGAGAGAAAACCCGAGCA 60.021 41.667 0.00 0.00 0.00 4.26
2188 2203 4.330347 GTCAAATAGAGAGAAAACCCGAGC 59.670 45.833 0.00 0.00 0.00 5.03
2189 2204 5.479306 TGTCAAATAGAGAGAAAACCCGAG 58.521 41.667 0.00 0.00 0.00 4.63
2190 2205 5.477607 TGTCAAATAGAGAGAAAACCCGA 57.522 39.130 0.00 0.00 0.00 5.14
2191 2206 4.093556 GCTGTCAAATAGAGAGAAAACCCG 59.906 45.833 0.00 0.00 39.94 5.28
2192 2207 5.249420 AGCTGTCAAATAGAGAGAAAACCC 58.751 41.667 0.00 0.00 39.94 4.11
2193 2208 5.062809 CGAGCTGTCAAATAGAGAGAAAACC 59.937 44.000 0.00 0.00 39.94 3.27
2194 2209 5.635700 ACGAGCTGTCAAATAGAGAGAAAAC 59.364 40.000 0.00 0.00 39.94 2.43
2195 2210 5.784177 ACGAGCTGTCAAATAGAGAGAAAA 58.216 37.500 0.00 0.00 39.94 2.29
2196 2211 5.392767 ACGAGCTGTCAAATAGAGAGAAA 57.607 39.130 0.00 0.00 39.94 2.52
2197 2212 6.095580 ACATACGAGCTGTCAAATAGAGAGAA 59.904 38.462 0.00 0.00 39.94 2.87
2198 2213 5.590663 ACATACGAGCTGTCAAATAGAGAGA 59.409 40.000 0.00 0.00 39.94 3.10
2199 2214 5.826586 ACATACGAGCTGTCAAATAGAGAG 58.173 41.667 0.00 0.00 40.47 3.20
2200 2215 5.590663 AGACATACGAGCTGTCAAATAGAGA 59.409 40.000 15.38 0.00 44.37 3.10
2201 2216 5.685068 CAGACATACGAGCTGTCAAATAGAG 59.315 44.000 15.38 0.00 44.37 2.43
2202 2217 5.450550 CCAGACATACGAGCTGTCAAATAGA 60.451 44.000 15.38 0.00 44.37 1.98
2203 2218 4.742167 CCAGACATACGAGCTGTCAAATAG 59.258 45.833 15.38 0.00 44.37 1.73
2204 2219 4.682787 CCAGACATACGAGCTGTCAAATA 58.317 43.478 15.38 0.00 44.37 1.40
2205 2220 3.525537 CCAGACATACGAGCTGTCAAAT 58.474 45.455 15.38 0.00 44.37 2.32
2206 2221 2.930887 GCCAGACATACGAGCTGTCAAA 60.931 50.000 15.38 0.00 44.37 2.69
2207 2222 1.404181 GCCAGACATACGAGCTGTCAA 60.404 52.381 15.38 0.00 44.37 3.18
2208 2223 0.173481 GCCAGACATACGAGCTGTCA 59.827 55.000 15.38 0.00 44.37 3.58
2209 2224 0.173481 TGCCAGACATACGAGCTGTC 59.827 55.000 0.00 0.00 42.68 3.51
2210 2225 0.108615 GTGCCAGACATACGAGCTGT 60.109 55.000 0.00 0.00 0.00 4.40
2211 2226 0.108662 TGTGCCAGACATACGAGCTG 60.109 55.000 0.00 0.00 0.00 4.24
2212 2227 0.826715 ATGTGCCAGACATACGAGCT 59.173 50.000 0.00 0.00 43.96 4.09
2213 2228 1.656652 AATGTGCCAGACATACGAGC 58.343 50.000 0.00 0.00 45.12 5.03
2214 2229 5.277490 CCATAAAATGTGCCAGACATACGAG 60.277 44.000 0.00 0.00 45.12 4.18
2215 2230 4.574421 CCATAAAATGTGCCAGACATACGA 59.426 41.667 0.00 0.00 45.12 3.43
2216 2231 4.789481 GCCATAAAATGTGCCAGACATACG 60.789 45.833 0.00 0.00 45.12 3.06
2217 2232 4.339247 AGCCATAAAATGTGCCAGACATAC 59.661 41.667 0.00 0.00 45.12 2.39
2218 2233 4.535781 AGCCATAAAATGTGCCAGACATA 58.464 39.130 0.00 0.00 45.12 2.29
2220 2235 2.806434 AGCCATAAAATGTGCCAGACA 58.194 42.857 0.00 0.00 39.53 3.41
2221 2236 3.874392 AAGCCATAAAATGTGCCAGAC 57.126 42.857 0.00 0.00 0.00 3.51
2222 2237 4.282957 TGAAAAGCCATAAAATGTGCCAGA 59.717 37.500 0.00 0.00 0.00 3.86
2223 2238 4.567971 TGAAAAGCCATAAAATGTGCCAG 58.432 39.130 0.00 0.00 0.00 4.85
2224 2239 4.613925 TGAAAAGCCATAAAATGTGCCA 57.386 36.364 0.00 0.00 0.00 4.92
2225 2240 5.938438 TTTGAAAAGCCATAAAATGTGCC 57.062 34.783 0.00 0.00 0.00 5.01
2226 2241 8.934825 TCTATTTTGAAAAGCCATAAAATGTGC 58.065 29.630 0.00 0.00 35.22 4.57
2232 2247 9.912634 CAAGTCTCTATTTTGAAAAGCCATAAA 57.087 29.630 0.00 0.00 0.00 1.40
2233 2248 9.077885 ACAAGTCTCTATTTTGAAAAGCCATAA 57.922 29.630 0.00 0.00 0.00 1.90
2234 2249 8.635765 ACAAGTCTCTATTTTGAAAAGCCATA 57.364 30.769 0.00 0.00 0.00 2.74
2235 2250 7.530426 ACAAGTCTCTATTTTGAAAAGCCAT 57.470 32.000 0.00 0.00 0.00 4.40
2236 2251 6.959639 ACAAGTCTCTATTTTGAAAAGCCA 57.040 33.333 0.00 0.00 0.00 4.75
2237 2252 8.138074 AGAAACAAGTCTCTATTTTGAAAAGCC 58.862 33.333 0.00 0.00 0.00 4.35
2238 2253 8.962111 CAGAAACAAGTCTCTATTTTGAAAAGC 58.038 33.333 0.00 0.00 0.00 3.51
2239 2254 9.455847 CCAGAAACAAGTCTCTATTTTGAAAAG 57.544 33.333 0.00 0.00 0.00 2.27
2240 2255 8.966868 ACCAGAAACAAGTCTCTATTTTGAAAA 58.033 29.630 0.00 0.00 0.00 2.29
2241 2256 8.519799 ACCAGAAACAAGTCTCTATTTTGAAA 57.480 30.769 0.00 0.00 0.00 2.69
2242 2257 7.228706 GGACCAGAAACAAGTCTCTATTTTGAA 59.771 37.037 0.00 0.00 0.00 2.69
2243 2258 6.710744 GGACCAGAAACAAGTCTCTATTTTGA 59.289 38.462 0.00 0.00 0.00 2.69
2244 2259 6.486657 TGGACCAGAAACAAGTCTCTATTTTG 59.513 38.462 0.00 0.00 0.00 2.44
2245 2260 6.601332 TGGACCAGAAACAAGTCTCTATTTT 58.399 36.000 0.00 0.00 0.00 1.82
2246 2261 6.187727 TGGACCAGAAACAAGTCTCTATTT 57.812 37.500 0.00 0.00 0.00 1.40
2247 2262 5.799213 CTGGACCAGAAACAAGTCTCTATT 58.201 41.667 17.22 0.00 32.44 1.73
2248 2263 4.323104 GCTGGACCAGAAACAAGTCTCTAT 60.323 45.833 26.25 0.00 32.44 1.98
2249 2264 3.006967 GCTGGACCAGAAACAAGTCTCTA 59.993 47.826 26.25 0.00 32.44 2.43
2250 2265 2.224402 GCTGGACCAGAAACAAGTCTCT 60.224 50.000 26.25 0.00 32.44 3.10
2251 2266 2.147150 GCTGGACCAGAAACAAGTCTC 58.853 52.381 26.25 0.00 32.44 3.36
2252 2267 1.771255 AGCTGGACCAGAAACAAGTCT 59.229 47.619 26.25 6.92 32.44 3.24
2253 2268 2.262423 AGCTGGACCAGAAACAAGTC 57.738 50.000 26.25 4.51 32.44 3.01
2254 2269 2.301346 CAAGCTGGACCAGAAACAAGT 58.699 47.619 26.25 0.00 32.44 3.16
2255 2270 1.000938 GCAAGCTGGACCAGAAACAAG 60.001 52.381 26.25 8.78 32.44 3.16
2256 2271 1.032014 GCAAGCTGGACCAGAAACAA 58.968 50.000 26.25 0.00 32.44 2.83
2257 2272 0.106769 TGCAAGCTGGACCAGAAACA 60.107 50.000 26.25 13.49 32.44 2.83
2258 2273 0.595095 CTGCAAGCTGGACCAGAAAC 59.405 55.000 26.25 11.04 32.44 2.78
2259 2274 0.538057 CCTGCAAGCTGGACCAGAAA 60.538 55.000 26.25 3.95 37.23 2.52
2260 2275 1.073722 CCTGCAAGCTGGACCAGAA 59.926 57.895 26.25 3.60 37.23 3.02
2261 2276 2.752358 CCTGCAAGCTGGACCAGA 59.248 61.111 26.25 2.41 37.23 3.86
2262 2277 2.360852 CCCTGCAAGCTGGACCAG 60.361 66.667 17.83 17.83 37.23 4.00
2263 2278 3.177884 ACCCTGCAAGCTGGACCA 61.178 61.111 18.16 0.00 37.23 4.02
2264 2279 1.553690 TAGACCCTGCAAGCTGGACC 61.554 60.000 18.16 9.70 37.23 4.46
2265 2280 0.324943 TTAGACCCTGCAAGCTGGAC 59.675 55.000 18.16 11.76 37.23 4.02
2266 2281 0.324943 GTTAGACCCTGCAAGCTGGA 59.675 55.000 18.16 0.00 37.23 3.86
2267 2282 0.036732 TGTTAGACCCTGCAAGCTGG 59.963 55.000 10.65 10.65 35.20 4.85
2268 2283 1.741706 CATGTTAGACCCTGCAAGCTG 59.258 52.381 0.00 0.00 0.00 4.24
2269 2284 1.630369 TCATGTTAGACCCTGCAAGCT 59.370 47.619 0.00 0.00 0.00 3.74
2270 2285 2.113860 TCATGTTAGACCCTGCAAGC 57.886 50.000 0.00 0.00 0.00 4.01
2271 2286 3.411446 TGTTCATGTTAGACCCTGCAAG 58.589 45.455 0.00 0.00 0.00 4.01
2272 2287 3.181445 ACTGTTCATGTTAGACCCTGCAA 60.181 43.478 0.00 0.00 0.00 4.08
2273 2288 2.371841 ACTGTTCATGTTAGACCCTGCA 59.628 45.455 0.00 0.00 0.00 4.41
2274 2289 3.059352 ACTGTTCATGTTAGACCCTGC 57.941 47.619 0.00 0.00 0.00 4.85
2275 2290 5.794894 AGTTACTGTTCATGTTAGACCCTG 58.205 41.667 0.00 0.00 0.00 4.45
2276 2291 5.780793 AGAGTTACTGTTCATGTTAGACCCT 59.219 40.000 0.00 0.00 0.00 4.34
2277 2292 6.038997 AGAGTTACTGTTCATGTTAGACCC 57.961 41.667 0.00 0.00 0.00 4.46
2278 2293 8.086522 TGTTAGAGTTACTGTTCATGTTAGACC 58.913 37.037 0.00 0.00 0.00 3.85
2279 2294 9.640963 ATGTTAGAGTTACTGTTCATGTTAGAC 57.359 33.333 0.00 0.00 0.00 2.59
2283 2298 9.950680 CAAAATGTTAGAGTTACTGTTCATGTT 57.049 29.630 0.00 0.00 0.00 2.71
2284 2299 8.076178 GCAAAATGTTAGAGTTACTGTTCATGT 58.924 33.333 0.00 0.00 0.00 3.21
2285 2300 7.538678 GGCAAAATGTTAGAGTTACTGTTCATG 59.461 37.037 0.00 0.00 0.00 3.07
2286 2301 7.448469 AGGCAAAATGTTAGAGTTACTGTTCAT 59.552 33.333 0.00 0.00 0.00 2.57
2287 2302 6.770785 AGGCAAAATGTTAGAGTTACTGTTCA 59.229 34.615 0.00 0.00 0.00 3.18
2288 2303 7.173390 AGAGGCAAAATGTTAGAGTTACTGTTC 59.827 37.037 0.00 0.00 0.00 3.18
2289 2304 6.998673 AGAGGCAAAATGTTAGAGTTACTGTT 59.001 34.615 0.00 0.00 0.00 3.16
2290 2305 6.534634 AGAGGCAAAATGTTAGAGTTACTGT 58.465 36.000 0.00 0.00 0.00 3.55
2291 2306 7.301054 CAAGAGGCAAAATGTTAGAGTTACTG 58.699 38.462 0.00 0.00 0.00 2.74
2292 2307 6.072452 GCAAGAGGCAAAATGTTAGAGTTACT 60.072 38.462 0.00 0.00 43.97 2.24
2293 2308 6.086871 GCAAGAGGCAAAATGTTAGAGTTAC 58.913 40.000 0.00 0.00 43.97 2.50
2294 2309 6.254281 GCAAGAGGCAAAATGTTAGAGTTA 57.746 37.500 0.00 0.00 43.97 2.24
2295 2310 5.126396 GCAAGAGGCAAAATGTTAGAGTT 57.874 39.130 0.00 0.00 43.97 3.01
2296 2311 4.773323 GCAAGAGGCAAAATGTTAGAGT 57.227 40.909 0.00 0.00 43.97 3.24
2309 2324 7.996385 TCAAAATACTAAATTAGGCAAGAGGC 58.004 34.615 4.92 0.00 43.74 4.70
2315 2330 9.905713 AGTCAGATCAAAATACTAAATTAGGCA 57.094 29.630 4.92 0.00 0.00 4.75
2320 2335 8.184192 CCGCAAGTCAGATCAAAATACTAAATT 58.816 33.333 0.00 0.00 0.00 1.82
2321 2336 7.201732 CCCGCAAGTCAGATCAAAATACTAAAT 60.202 37.037 0.00 0.00 0.00 1.40
2322 2337 6.093495 CCCGCAAGTCAGATCAAAATACTAAA 59.907 38.462 0.00 0.00 0.00 1.85
2323 2338 5.584649 CCCGCAAGTCAGATCAAAATACTAA 59.415 40.000 0.00 0.00 0.00 2.24
2324 2339 5.116180 CCCGCAAGTCAGATCAAAATACTA 58.884 41.667 0.00 0.00 0.00 1.82
2325 2340 3.941483 CCCGCAAGTCAGATCAAAATACT 59.059 43.478 0.00 0.00 0.00 2.12
2326 2341 3.065371 CCCCGCAAGTCAGATCAAAATAC 59.935 47.826 0.00 0.00 0.00 1.89
2327 2342 3.278574 CCCCGCAAGTCAGATCAAAATA 58.721 45.455 0.00 0.00 0.00 1.40
2328 2343 2.094675 CCCCGCAAGTCAGATCAAAAT 58.905 47.619 0.00 0.00 0.00 1.82
2329 2344 1.533625 CCCCGCAAGTCAGATCAAAA 58.466 50.000 0.00 0.00 0.00 2.44
2330 2345 0.322456 CCCCCGCAAGTCAGATCAAA 60.322 55.000 0.00 0.00 0.00 2.69
2331 2346 1.198094 TCCCCCGCAAGTCAGATCAA 61.198 55.000 0.00 0.00 0.00 2.57
2332 2347 1.612146 TCCCCCGCAAGTCAGATCA 60.612 57.895 0.00 0.00 0.00 2.92
2333 2348 1.144936 CTCCCCCGCAAGTCAGATC 59.855 63.158 0.00 0.00 0.00 2.75
2334 2349 1.201429 AACTCCCCCGCAAGTCAGAT 61.201 55.000 0.00 0.00 0.00 2.90
2335 2350 1.827399 GAACTCCCCCGCAAGTCAGA 61.827 60.000 0.00 0.00 0.00 3.27
2336 2351 1.376037 GAACTCCCCCGCAAGTCAG 60.376 63.158 0.00 0.00 0.00 3.51
2337 2352 2.747686 GAACTCCCCCGCAAGTCA 59.252 61.111 0.00 0.00 0.00 3.41
2338 2353 2.240162 ATCGAACTCCCCCGCAAGTC 62.240 60.000 0.00 0.00 0.00 3.01
2339 2354 2.240162 GATCGAACTCCCCCGCAAGT 62.240 60.000 0.00 0.00 0.00 3.16
2340 2355 1.521681 GATCGAACTCCCCCGCAAG 60.522 63.158 0.00 0.00 0.00 4.01
2341 2356 2.582436 GATCGAACTCCCCCGCAA 59.418 61.111 0.00 0.00 0.00 4.85
2342 2357 3.833645 CGATCGAACTCCCCCGCA 61.834 66.667 10.26 0.00 0.00 5.69
2343 2358 2.567564 TTTCGATCGAACTCCCCCGC 62.568 60.000 29.15 0.00 33.41 6.13
2344 2359 0.104304 ATTTCGATCGAACTCCCCCG 59.896 55.000 29.15 0.00 33.41 5.73
2345 2360 1.138266 TCATTTCGATCGAACTCCCCC 59.862 52.381 29.15 0.00 33.41 5.40
2346 2361 2.202566 GTCATTTCGATCGAACTCCCC 58.797 52.381 29.15 12.90 33.41 4.81
2347 2362 2.888594 TGTCATTTCGATCGAACTCCC 58.111 47.619 29.15 17.45 33.41 4.30
2348 2363 4.921470 TTTGTCATTTCGATCGAACTCC 57.079 40.909 29.15 17.12 33.41 3.85
2349 2364 5.080068 GGTTTTGTCATTTCGATCGAACTC 58.920 41.667 29.15 18.50 33.41 3.01
2350 2365 4.755123 AGGTTTTGTCATTTCGATCGAACT 59.245 37.500 29.15 21.56 33.41 3.01
2351 2366 5.030874 AGGTTTTGTCATTTCGATCGAAC 57.969 39.130 29.15 19.03 33.41 3.95
2352 2367 4.994852 AGAGGTTTTGTCATTTCGATCGAA 59.005 37.500 25.96 25.96 0.00 3.71
2353 2368 4.566004 AGAGGTTTTGTCATTTCGATCGA 58.434 39.130 15.15 15.15 0.00 3.59
2354 2369 4.928661 AGAGGTTTTGTCATTTCGATCG 57.071 40.909 9.36 9.36 0.00 3.69
2355 2370 9.278734 GAAATAAGAGGTTTTGTCATTTCGATC 57.721 33.333 0.00 0.00 0.00 3.69
2356 2371 8.244113 GGAAATAAGAGGTTTTGTCATTTCGAT 58.756 33.333 0.00 0.00 33.69 3.59
2357 2372 7.572353 CGGAAATAAGAGGTTTTGTCATTTCGA 60.572 37.037 0.00 0.00 33.69 3.71
2358 2373 6.523201 CGGAAATAAGAGGTTTTGTCATTTCG 59.477 38.462 0.00 0.00 33.69 3.46
2359 2374 6.806739 CCGGAAATAAGAGGTTTTGTCATTTC 59.193 38.462 0.00 0.00 32.66 2.17
2360 2375 6.492087 TCCGGAAATAAGAGGTTTTGTCATTT 59.508 34.615 0.00 0.00 0.00 2.32
2361 2376 6.007703 TCCGGAAATAAGAGGTTTTGTCATT 58.992 36.000 0.00 0.00 0.00 2.57
2362 2377 5.566469 TCCGGAAATAAGAGGTTTTGTCAT 58.434 37.500 0.00 0.00 0.00 3.06
2363 2378 4.975631 TCCGGAAATAAGAGGTTTTGTCA 58.024 39.130 0.00 0.00 0.00 3.58
2364 2379 5.952526 TTCCGGAAATAAGAGGTTTTGTC 57.047 39.130 16.28 0.00 0.00 3.18
2365 2380 6.911250 AATTCCGGAAATAAGAGGTTTTGT 57.089 33.333 23.08 0.00 0.00 2.83
2366 2381 9.869757 ATTTAATTCCGGAAATAAGAGGTTTTG 57.130 29.630 23.08 0.00 0.00 2.44
2368 2383 9.869757 CAATTTAATTCCGGAAATAAGAGGTTT 57.130 29.630 23.08 9.99 0.00 3.27
2369 2384 7.979537 GCAATTTAATTCCGGAAATAAGAGGTT 59.020 33.333 23.08 10.75 0.00 3.50
2370 2385 7.123547 TGCAATTTAATTCCGGAAATAAGAGGT 59.876 33.333 23.08 8.00 0.00 3.85
2371 2386 7.488322 TGCAATTTAATTCCGGAAATAAGAGG 58.512 34.615 23.08 15.57 0.00 3.69
2372 2387 8.925161 TTGCAATTTAATTCCGGAAATAAGAG 57.075 30.769 23.08 16.17 0.00 2.85
2373 2388 9.712305 TTTTGCAATTTAATTCCGGAAATAAGA 57.288 25.926 23.08 13.75 0.00 2.10
2444 2459 9.405587 CGGTTGATTGTTTATGTGAAAGTAAAT 57.594 29.630 0.00 0.00 0.00 1.40
2445 2460 7.380065 GCGGTTGATTGTTTATGTGAAAGTAAA 59.620 33.333 0.00 0.00 0.00 2.01
2446 2461 6.858993 GCGGTTGATTGTTTATGTGAAAGTAA 59.141 34.615 0.00 0.00 0.00 2.24
2447 2462 6.017026 TGCGGTTGATTGTTTATGTGAAAGTA 60.017 34.615 0.00 0.00 0.00 2.24
2448 2463 5.219633 GCGGTTGATTGTTTATGTGAAAGT 58.780 37.500 0.00 0.00 0.00 2.66
2449 2464 5.218885 TGCGGTTGATTGTTTATGTGAAAG 58.781 37.500 0.00 0.00 0.00 2.62
2450 2465 5.188327 TGCGGTTGATTGTTTATGTGAAA 57.812 34.783 0.00 0.00 0.00 2.69
2451 2466 4.837896 TGCGGTTGATTGTTTATGTGAA 57.162 36.364 0.00 0.00 0.00 3.18
2452 2467 4.837896 TTGCGGTTGATTGTTTATGTGA 57.162 36.364 0.00 0.00 0.00 3.58
2453 2468 4.149747 GGTTTGCGGTTGATTGTTTATGTG 59.850 41.667 0.00 0.00 0.00 3.21
2454 2469 4.202161 TGGTTTGCGGTTGATTGTTTATGT 60.202 37.500 0.00 0.00 0.00 2.29
2455 2470 4.302455 TGGTTTGCGGTTGATTGTTTATG 58.698 39.130 0.00 0.00 0.00 1.90
2456 2471 4.592485 TGGTTTGCGGTTGATTGTTTAT 57.408 36.364 0.00 0.00 0.00 1.40
2457 2472 4.386867 TTGGTTTGCGGTTGATTGTTTA 57.613 36.364 0.00 0.00 0.00 2.01
2458 2473 2.969628 TGGTTTGCGGTTGATTGTTT 57.030 40.000 0.00 0.00 0.00 2.83
2459 2474 2.969628 TTGGTTTGCGGTTGATTGTT 57.030 40.000 0.00 0.00 0.00 2.83
2460 2475 2.969628 TTTGGTTTGCGGTTGATTGT 57.030 40.000 0.00 0.00 0.00 2.71
2461 2476 3.545822 GCTTTTTGGTTTGCGGTTGATTG 60.546 43.478 0.00 0.00 0.00 2.67
2462 2477 2.611751 GCTTTTTGGTTTGCGGTTGATT 59.388 40.909 0.00 0.00 0.00 2.57
2463 2478 2.209273 GCTTTTTGGTTTGCGGTTGAT 58.791 42.857 0.00 0.00 0.00 2.57
2464 2479 1.066858 TGCTTTTTGGTTTGCGGTTGA 60.067 42.857 0.00 0.00 0.00 3.18
2465 2480 1.363744 TGCTTTTTGGTTTGCGGTTG 58.636 45.000 0.00 0.00 0.00 3.77
2466 2481 1.939255 CATGCTTTTTGGTTTGCGGTT 59.061 42.857 0.00 0.00 0.00 4.44
2467 2482 1.580815 CATGCTTTTTGGTTTGCGGT 58.419 45.000 0.00 0.00 0.00 5.68
2468 2483 0.867086 CCATGCTTTTTGGTTTGCGG 59.133 50.000 0.00 0.00 0.00 5.69
2469 2484 0.867086 CCCATGCTTTTTGGTTTGCG 59.133 50.000 0.00 0.00 31.99 4.85
2470 2485 1.237533 CCCCATGCTTTTTGGTTTGC 58.762 50.000 0.00 0.00 31.99 3.68
2471 2486 1.419387 TCCCCCATGCTTTTTGGTTTG 59.581 47.619 0.00 0.00 31.99 2.93
2472 2487 1.699083 CTCCCCCATGCTTTTTGGTTT 59.301 47.619 0.00 0.00 31.99 3.27
2473 2488 1.351076 CTCCCCCATGCTTTTTGGTT 58.649 50.000 0.00 0.00 31.99 3.67
2474 2489 0.545071 CCTCCCCCATGCTTTTTGGT 60.545 55.000 0.00 0.00 31.99 3.67
2475 2490 0.545071 ACCTCCCCCATGCTTTTTGG 60.545 55.000 0.00 0.00 0.00 3.28
2476 2491 1.351076 AACCTCCCCCATGCTTTTTG 58.649 50.000 0.00 0.00 0.00 2.44
2477 2492 1.699083 CAAACCTCCCCCATGCTTTTT 59.301 47.619 0.00 0.00 0.00 1.94
2478 2493 1.351076 CAAACCTCCCCCATGCTTTT 58.649 50.000 0.00 0.00 0.00 2.27
2479 2494 1.194121 GCAAACCTCCCCCATGCTTT 61.194 55.000 0.00 0.00 34.29 3.51
2480 2495 1.610379 GCAAACCTCCCCCATGCTT 60.610 57.895 0.00 0.00 34.29 3.91
2481 2496 2.037847 GCAAACCTCCCCCATGCT 59.962 61.111 0.00 0.00 34.29 3.79
2482 2497 3.451894 CGCAAACCTCCCCCATGC 61.452 66.667 0.00 0.00 0.00 4.06
2483 2498 2.755469 CCGCAAACCTCCCCCATG 60.755 66.667 0.00 0.00 0.00 3.66
2484 2499 2.938798 TCCGCAAACCTCCCCCAT 60.939 61.111 0.00 0.00 0.00 4.00
2485 2500 3.646715 CTCCGCAAACCTCCCCCA 61.647 66.667 0.00 0.00 0.00 4.96
2489 2504 4.699522 ACCGCTCCGCAAACCTCC 62.700 66.667 0.00 0.00 0.00 4.30
2490 2505 3.119096 GACCGCTCCGCAAACCTC 61.119 66.667 0.00 0.00 0.00 3.85
2491 2506 4.699522 GGACCGCTCCGCAAACCT 62.700 66.667 0.00 0.00 0.00 3.50
2503 2518 3.252484 GAAATCGCGTCCGGACCG 61.252 66.667 28.52 28.64 34.56 4.79
2504 2519 1.877165 GAGAAATCGCGTCCGGACC 60.877 63.158 28.52 19.32 34.56 4.46
2505 2520 1.877165 GGAGAAATCGCGTCCGGAC 60.877 63.158 25.28 25.28 34.56 4.79
2506 2521 2.493030 GGAGAAATCGCGTCCGGA 59.507 61.111 5.77 0.00 34.56 5.14
2507 2522 2.585247 GGGAGAAATCGCGTCCGG 60.585 66.667 5.77 0.00 34.56 5.14
2508 2523 2.954868 CGGGAGAAATCGCGTCCG 60.955 66.667 5.77 5.84 40.45 4.79
2509 2524 3.262686 GCGGGAGAAATCGCGTCC 61.263 66.667 5.77 4.85 45.79 4.79
2514 2529 1.438651 TCAGTTTGCGGGAGAAATCG 58.561 50.000 0.00 0.00 0.00 3.34
2515 2530 3.074412 TCTTCAGTTTGCGGGAGAAATC 58.926 45.455 0.00 0.00 0.00 2.17
2516 2531 2.814336 GTCTTCAGTTTGCGGGAGAAAT 59.186 45.455 0.00 0.00 0.00 2.17
2517 2532 2.218603 GTCTTCAGTTTGCGGGAGAAA 58.781 47.619 0.00 0.00 0.00 2.52
2518 2533 1.140052 TGTCTTCAGTTTGCGGGAGAA 59.860 47.619 0.00 0.00 0.00 2.87
2519 2534 0.756294 TGTCTTCAGTTTGCGGGAGA 59.244 50.000 0.00 0.00 0.00 3.71
2520 2535 1.593196 TTGTCTTCAGTTTGCGGGAG 58.407 50.000 0.00 0.00 0.00 4.30
2521 2536 1.673920 GTTTGTCTTCAGTTTGCGGGA 59.326 47.619 0.00 0.00 0.00 5.14
2522 2537 1.596954 CGTTTGTCTTCAGTTTGCGGG 60.597 52.381 0.00 0.00 0.00 6.13
2523 2538 1.063469 ACGTTTGTCTTCAGTTTGCGG 59.937 47.619 0.00 0.00 0.00 5.69
2524 2539 2.101125 CACGTTTGTCTTCAGTTTGCG 58.899 47.619 0.00 0.00 0.00 4.85
2525 2540 2.450160 CCACGTTTGTCTTCAGTTTGC 58.550 47.619 0.00 0.00 0.00 3.68
2526 2541 2.223479 CCCCACGTTTGTCTTCAGTTTG 60.223 50.000 0.00 0.00 0.00 2.93
2527 2542 2.021457 CCCCACGTTTGTCTTCAGTTT 58.979 47.619 0.00 0.00 0.00 2.66
2528 2543 1.675552 CCCCACGTTTGTCTTCAGTT 58.324 50.000 0.00 0.00 0.00 3.16
2529 2544 0.179029 CCCCCACGTTTGTCTTCAGT 60.179 55.000 0.00 0.00 0.00 3.41
2530 2545 0.107831 TCCCCCACGTTTGTCTTCAG 59.892 55.000 0.00 0.00 0.00 3.02
2531 2546 0.107831 CTCCCCCACGTTTGTCTTCA 59.892 55.000 0.00 0.00 0.00 3.02
2532 2547 0.605589 CCTCCCCCACGTTTGTCTTC 60.606 60.000 0.00 0.00 0.00 2.87
2533 2548 1.350310 ACCTCCCCCACGTTTGTCTT 61.350 55.000 0.00 0.00 0.00 3.01
2534 2549 1.350310 AACCTCCCCCACGTTTGTCT 61.350 55.000 0.00 0.00 0.00 3.41
2535 2550 0.466739 AAACCTCCCCCACGTTTGTC 60.467 55.000 0.00 0.00 0.00 3.18
2536 2551 0.753848 CAAACCTCCCCCACGTTTGT 60.754 55.000 0.00 0.00 40.80 2.83
2537 2552 2.037871 CAAACCTCCCCCACGTTTG 58.962 57.895 0.00 0.00 40.09 2.93
2538 2553 1.830847 GCAAACCTCCCCCACGTTT 60.831 57.895 0.00 0.00 0.00 3.60
2539 2554 2.203437 GCAAACCTCCCCCACGTT 60.203 61.111 0.00 0.00 0.00 3.99
2540 2555 4.636435 CGCAAACCTCCCCCACGT 62.636 66.667 0.00 0.00 0.00 4.49
2544 2559 4.426313 CTCCCGCAAACCTCCCCC 62.426 72.222 0.00 0.00 0.00 5.40
2545 2560 2.708593 AAACTCCCGCAAACCTCCCC 62.709 60.000 0.00 0.00 0.00 4.81
2546 2561 1.228459 AAACTCCCGCAAACCTCCC 60.228 57.895 0.00 0.00 0.00 4.30
2547 2562 1.524008 CCAAACTCCCGCAAACCTCC 61.524 60.000 0.00 0.00 0.00 4.30
2548 2563 0.536460 TCCAAACTCCCGCAAACCTC 60.536 55.000 0.00 0.00 0.00 3.85
2549 2564 0.822121 GTCCAAACTCCCGCAAACCT 60.822 55.000 0.00 0.00 0.00 3.50
2550 2565 1.104577 TGTCCAAACTCCCGCAAACC 61.105 55.000 0.00 0.00 0.00 3.27
2551 2566 0.030235 GTGTCCAAACTCCCGCAAAC 59.970 55.000 0.00 0.00 0.00 2.93
2552 2567 1.440938 CGTGTCCAAACTCCCGCAAA 61.441 55.000 0.00 0.00 0.00 3.68
2553 2568 1.890041 CGTGTCCAAACTCCCGCAA 60.890 57.895 0.00 0.00 0.00 4.85
2554 2569 2.280524 CGTGTCCAAACTCCCGCA 60.281 61.111 0.00 0.00 0.00 5.69
2555 2570 3.723348 GCGTGTCCAAACTCCCGC 61.723 66.667 0.00 0.00 33.24 6.13
2556 2571 3.411351 CGCGTGTCCAAACTCCCG 61.411 66.667 0.00 0.00 0.00 5.14
2557 2572 1.161563 TTTCGCGTGTCCAAACTCCC 61.162 55.000 5.77 0.00 0.00 4.30
2558 2573 0.041576 GTTTCGCGTGTCCAAACTCC 60.042 55.000 5.77 0.00 0.00 3.85
2559 2574 0.382636 CGTTTCGCGTGTCCAAACTC 60.383 55.000 15.52 0.00 35.54 3.01
2560 2575 1.639534 CGTTTCGCGTGTCCAAACT 59.360 52.632 15.52 0.00 35.54 2.66
2561 2576 4.183146 CGTTTCGCGTGTCCAAAC 57.817 55.556 5.77 8.17 35.54 2.93
2582 2597 4.168291 GGGCAGGGGAGCGAAGAG 62.168 72.222 0.00 0.00 34.64 2.85
2584 2599 4.785453 GTGGGCAGGGGAGCGAAG 62.785 72.222 0.00 0.00 34.64 3.79
2589 2604 3.159104 TTTTGGGTGGGCAGGGGAG 62.159 63.158 0.00 0.00 0.00 4.30
2590 2605 3.113477 TTTTGGGTGGGCAGGGGA 61.113 61.111 0.00 0.00 0.00 4.81
2591 2606 2.604382 CTTTTGGGTGGGCAGGGG 60.604 66.667 0.00 0.00 0.00 4.79
2592 2607 2.604382 CCTTTTGGGTGGGCAGGG 60.604 66.667 0.00 0.00 35.46 4.45
2593 2608 1.152355 TTCCTTTTGGGTGGGCAGG 60.152 57.895 0.00 0.00 40.87 4.85
2594 2609 1.187567 CCTTCCTTTTGGGTGGGCAG 61.188 60.000 0.00 0.00 40.87 4.85
2595 2610 1.152355 CCTTCCTTTTGGGTGGGCA 60.152 57.895 0.00 0.00 40.87 5.36
2596 2611 1.152333 ACCTTCCTTTTGGGTGGGC 60.152 57.895 0.00 0.00 40.87 5.36
2597 2612 0.893727 CGACCTTCCTTTTGGGTGGG 60.894 60.000 0.00 0.00 40.87 4.61
2598 2613 0.109723 TCGACCTTCCTTTTGGGTGG 59.890 55.000 0.00 0.00 40.87 4.61
2599 2614 1.523758 CTCGACCTTCCTTTTGGGTG 58.476 55.000 0.00 0.00 40.87 4.61
2600 2615 0.250770 GCTCGACCTTCCTTTTGGGT 60.251 55.000 0.00 0.00 40.87 4.51
2601 2616 0.960861 GGCTCGACCTTCCTTTTGGG 60.961 60.000 0.00 0.00 36.25 4.12
2602 2617 0.960861 GGGCTCGACCTTCCTTTTGG 60.961 60.000 4.41 0.00 39.10 3.28
2603 2618 1.298859 CGGGCTCGACCTTCCTTTTG 61.299 60.000 0.00 0.00 39.10 2.44
2604 2619 1.003718 CGGGCTCGACCTTCCTTTT 60.004 57.895 0.00 0.00 39.10 2.27
2605 2620 2.663196 CGGGCTCGACCTTCCTTT 59.337 61.111 0.00 0.00 39.10 3.11
2606 2621 4.083862 GCGGGCTCGACCTTCCTT 62.084 66.667 12.03 0.00 39.10 3.36
2619 2634 3.969642 GATGCCACAAAAGCGCGGG 62.970 63.158 8.83 0.00 0.00 6.13
2620 2635 2.504681 GATGCCACAAAAGCGCGG 60.505 61.111 8.83 0.00 0.00 6.46
2621 2636 2.504681 GGATGCCACAAAAGCGCG 60.505 61.111 0.00 0.00 0.00 6.86
2622 2637 2.125952 GGGATGCCACAAAAGCGC 60.126 61.111 0.00 0.00 0.00 5.92
2623 2638 1.080569 GTGGGATGCCACAAAAGCG 60.081 57.895 29.60 0.00 40.13 4.68
2624 2639 2.048601 TGTGGGATGCCACAAAAGC 58.951 52.632 34.08 9.48 46.02 3.51
2629 2644 0.106268 AAACAGTGTGGGATGCCACA 60.106 50.000 32.82 32.82 46.69 4.17
2630 2645 1.000274 GAAAACAGTGTGGGATGCCAC 60.000 52.381 28.15 28.15 40.73 5.01
2631 2646 1.327303 GAAAACAGTGTGGGATGCCA 58.673 50.000 0.00 0.00 0.00 4.92
2632 2647 0.240945 CGAAAACAGTGTGGGATGCC 59.759 55.000 0.00 0.00 0.00 4.40
2633 2648 0.951558 ACGAAAACAGTGTGGGATGC 59.048 50.000 0.00 0.00 0.00 3.91
2634 2649 1.334960 GCACGAAAACAGTGTGGGATG 60.335 52.381 0.00 0.00 41.36 3.51
2635 2650 0.951558 GCACGAAAACAGTGTGGGAT 59.048 50.000 0.00 0.00 41.36 3.85
2636 2651 1.098712 GGCACGAAAACAGTGTGGGA 61.099 55.000 0.00 0.00 41.36 4.37
2637 2652 1.358759 GGCACGAAAACAGTGTGGG 59.641 57.895 0.00 0.00 41.36 4.61
2638 2653 0.453793 TTGGCACGAAAACAGTGTGG 59.546 50.000 0.00 0.00 41.36 4.17
2639 2654 2.270275 TTTGGCACGAAAACAGTGTG 57.730 45.000 0.00 0.00 41.36 3.82
2640 2655 3.443976 GATTTTGGCACGAAAACAGTGT 58.556 40.909 0.00 0.00 41.36 3.55
2641 2656 2.794350 GGATTTTGGCACGAAAACAGTG 59.206 45.455 0.00 0.00 42.15 3.66
2642 2657 2.223947 GGGATTTTGGCACGAAAACAGT 60.224 45.455 0.00 0.00 0.00 3.55
2643 2658 2.035832 AGGGATTTTGGCACGAAAACAG 59.964 45.455 0.00 0.00 0.00 3.16
2644 2659 2.035321 GAGGGATTTTGGCACGAAAACA 59.965 45.455 0.00 0.00 0.00 2.83
2645 2660 2.035321 TGAGGGATTTTGGCACGAAAAC 59.965 45.455 0.00 0.00 0.00 2.43
2646 2661 2.035321 GTGAGGGATTTTGGCACGAAAA 59.965 45.455 0.00 0.00 0.00 2.29
2647 2662 1.611491 GTGAGGGATTTTGGCACGAAA 59.389 47.619 0.00 0.00 0.00 3.46
2648 2663 1.202879 AGTGAGGGATTTTGGCACGAA 60.203 47.619 0.00 0.00 34.82 3.85
2649 2664 0.400213 AGTGAGGGATTTTGGCACGA 59.600 50.000 0.00 0.00 34.82 4.35
2650 2665 0.804989 GAGTGAGGGATTTTGGCACG 59.195 55.000 0.00 0.00 34.82 5.34
2651 2666 2.087646 GAGAGTGAGGGATTTTGGCAC 58.912 52.381 0.00 0.00 0.00 5.01
2652 2667 1.988107 AGAGAGTGAGGGATTTTGGCA 59.012 47.619 0.00 0.00 0.00 4.92
2653 2668 2.797177 AGAGAGTGAGGGATTTTGGC 57.203 50.000 0.00 0.00 0.00 4.52
2654 2669 4.566426 AGAAGAGAGTGAGGGATTTTGG 57.434 45.455 0.00 0.00 0.00 3.28
2655 2670 4.940654 GGAAGAAGAGAGTGAGGGATTTTG 59.059 45.833 0.00 0.00 0.00 2.44
2656 2671 4.599241 TGGAAGAAGAGAGTGAGGGATTTT 59.401 41.667 0.00 0.00 0.00 1.82
2657 2672 4.019771 GTGGAAGAAGAGAGTGAGGGATTT 60.020 45.833 0.00 0.00 0.00 2.17
2658 2673 3.517500 GTGGAAGAAGAGAGTGAGGGATT 59.482 47.826 0.00 0.00 0.00 3.01
2659 2674 3.103742 GTGGAAGAAGAGAGTGAGGGAT 58.896 50.000 0.00 0.00 0.00 3.85
2660 2675 2.110899 AGTGGAAGAAGAGAGTGAGGGA 59.889 50.000 0.00 0.00 0.00 4.20
2661 2676 2.495669 GAGTGGAAGAAGAGAGTGAGGG 59.504 54.545 0.00 0.00 0.00 4.30
2662 2677 2.495669 GGAGTGGAAGAAGAGAGTGAGG 59.504 54.545 0.00 0.00 0.00 3.86
2663 2678 2.495669 GGGAGTGGAAGAAGAGAGTGAG 59.504 54.545 0.00 0.00 0.00 3.51
2664 2679 2.530701 GGGAGTGGAAGAAGAGAGTGA 58.469 52.381 0.00 0.00 0.00 3.41
2665 2680 1.552792 GGGGAGTGGAAGAAGAGAGTG 59.447 57.143 0.00 0.00 0.00 3.51
2666 2681 1.893210 CGGGGAGTGGAAGAAGAGAGT 60.893 57.143 0.00 0.00 0.00 3.24
2667 2682 0.820871 CGGGGAGTGGAAGAAGAGAG 59.179 60.000 0.00 0.00 0.00 3.20
2668 2683 1.258445 GCGGGGAGTGGAAGAAGAGA 61.258 60.000 0.00 0.00 0.00 3.10
2669 2684 1.219393 GCGGGGAGTGGAAGAAGAG 59.781 63.158 0.00 0.00 0.00 2.85
2670 2685 2.291043 GGCGGGGAGTGGAAGAAGA 61.291 63.158 0.00 0.00 0.00 2.87
2671 2686 2.269241 GGCGGGGAGTGGAAGAAG 59.731 66.667 0.00 0.00 0.00 2.85
2672 2687 3.702048 CGGCGGGGAGTGGAAGAA 61.702 66.667 0.00 0.00 0.00 2.52
2690 2705 2.203070 CGGGATTTGGGCGGAGAG 60.203 66.667 0.00 0.00 0.00 3.20
2691 2706 4.483243 GCGGGATTTGGGCGGAGA 62.483 66.667 0.00 0.00 0.00 3.71
2692 2707 4.489771 AGCGGGATTTGGGCGGAG 62.490 66.667 0.00 0.00 0.00 4.63
2693 2708 4.483243 GAGCGGGATTTGGGCGGA 62.483 66.667 0.00 0.00 0.00 5.54
2694 2709 3.995506 AAGAGCGGGATTTGGGCGG 62.996 63.158 0.00 0.00 0.00 6.13
2695 2710 1.595093 AAAAGAGCGGGATTTGGGCG 61.595 55.000 0.00 0.00 0.00 6.13
2696 2711 0.173481 GAAAAGAGCGGGATTTGGGC 59.827 55.000 0.00 0.00 0.00 5.36
2697 2712 1.745653 GAGAAAAGAGCGGGATTTGGG 59.254 52.381 0.00 0.00 0.00 4.12
2698 2713 1.745653 GGAGAAAAGAGCGGGATTTGG 59.254 52.381 0.00 0.00 0.00 3.28
2699 2714 1.745653 GGGAGAAAAGAGCGGGATTTG 59.254 52.381 0.00 0.00 0.00 2.32
2700 2715 1.354368 TGGGAGAAAAGAGCGGGATTT 59.646 47.619 0.00 0.00 0.00 2.17
2701 2716 0.991920 TGGGAGAAAAGAGCGGGATT 59.008 50.000 0.00 0.00 0.00 3.01
2702 2717 0.253327 GTGGGAGAAAAGAGCGGGAT 59.747 55.000 0.00 0.00 0.00 3.85
2703 2718 1.677552 GTGGGAGAAAAGAGCGGGA 59.322 57.895 0.00 0.00 0.00 5.14
2704 2719 1.377333 GGTGGGAGAAAAGAGCGGG 60.377 63.158 0.00 0.00 0.00 6.13
2705 2720 1.377333 GGGTGGGAGAAAAGAGCGG 60.377 63.158 0.00 0.00 0.00 5.52
2706 2721 0.391793 GAGGGTGGGAGAAAAGAGCG 60.392 60.000 0.00 0.00 0.00 5.03
2707 2722 0.988063 AGAGGGTGGGAGAAAAGAGC 59.012 55.000 0.00 0.00 0.00 4.09
2708 2723 1.557371 GGAGAGGGTGGGAGAAAAGAG 59.443 57.143 0.00 0.00 0.00 2.85
2709 2724 1.152271 AGGAGAGGGTGGGAGAAAAGA 59.848 52.381 0.00 0.00 0.00 2.52
2710 2725 1.662686 AGGAGAGGGTGGGAGAAAAG 58.337 55.000 0.00 0.00 0.00 2.27
2711 2726 2.133858 AAGGAGAGGGTGGGAGAAAA 57.866 50.000 0.00 0.00 0.00 2.29
2712 2727 3.914860 AAGGAGAGGGTGGGAGAAA 57.085 52.632 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.