Multiple sequence alignment - TraesCS2D01G362600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G362600 chr2D 100.000 9084 0 0 1 9084 468774086 468765003 0.000000e+00 16776.0
1 TraesCS2D01G362600 chr2D 87.058 989 78 25 5655 6618 468767469 468768432 0.000000e+00 1072.0
2 TraesCS2D01G362600 chr2D 81.548 504 79 10 5613 6105 548441665 548441165 3.950000e-108 403.0
3 TraesCS2D01G362600 chr2D 77.530 672 99 26 6140 6765 548441131 548441796 3.120000e-94 357.0
4 TraesCS2D01G362600 chr2B 93.296 1954 116 8 3158 5106 546947684 546945741 0.000000e+00 2868.0
5 TraesCS2D01G362600 chr2B 90.894 1186 80 14 5751 6913 546945049 546943869 0.000000e+00 1567.0
6 TraesCS2D01G362600 chr2B 93.578 981 41 4 1741 2718 546950933 546949972 0.000000e+00 1443.0
7 TraesCS2D01G362600 chr2B 93.723 940 42 9 788 1714 546951863 546950928 0.000000e+00 1393.0
8 TraesCS2D01G362600 chr2B 91.435 934 28 6 7437 8339 546942490 546941578 0.000000e+00 1234.0
9 TraesCS2D01G362600 chr2B 86.526 898 87 25 5648 6523 546944163 546945048 0.000000e+00 957.0
10 TraesCS2D01G362600 chr2B 95.859 483 16 2 1 483 546974143 546973665 0.000000e+00 778.0
11 TraesCS2D01G362600 chr2B 90.885 373 20 4 6926 7296 546943111 546942751 1.060000e-133 488.0
12 TraesCS2D01G362600 chr2B 95.378 238 9 2 381 616 546973682 546973445 2.390000e-100 377.0
13 TraesCS2D01G362600 chr2B 92.490 253 18 1 2863 3115 546949830 546949579 2.410000e-95 361.0
14 TraesCS2D01G362600 chr2B 96.685 181 4 2 612 791 546952427 546952248 5.330000e-77 300.0
15 TraesCS2D01G362600 chr2B 95.092 163 8 0 2699 2861 546949951 546949789 3.250000e-64 257.0
16 TraesCS2D01G362600 chr2B 93.878 147 9 0 7300 7446 546942700 546942554 1.190000e-53 222.0
17 TraesCS2D01G362600 chr2B 94.828 116 5 1 8969 9084 546938570 546938456 7.250000e-41 180.0
18 TraesCS2D01G362600 chr2B 87.838 148 16 2 2864 3010 546942641 546942495 1.210000e-38 172.0
19 TraesCS2D01G362600 chr2B 85.443 158 12 6 8672 8827 546938794 546938646 4.390000e-33 154.0
20 TraesCS2D01G362600 chr2B 91.803 61 1 2 8502 8559 516729543 516729484 2.100000e-11 82.4
21 TraesCS2D01G362600 chr2A 91.658 1954 132 20 790 2725 608620390 608618450 0.000000e+00 2676.0
22 TraesCS2D01G362600 chr2A 84.289 1814 242 27 3119 4919 102036940 102038723 0.000000e+00 1731.0
23 TraesCS2D01G362600 chr2A 88.086 1301 118 17 3115 4405 608617661 608616388 0.000000e+00 1509.0
24 TraesCS2D01G362600 chr2A 87.660 940 43 20 8213 9084 608609798 608608864 0.000000e+00 1026.0
25 TraesCS2D01G362600 chr2A 89.091 715 51 14 85 791 608632813 608632118 0.000000e+00 863.0
26 TraesCS2D01G362600 chr2A 90.847 590 37 8 7570 8155 608611309 608610733 0.000000e+00 774.0
27 TraesCS2D01G362600 chr2A 81.800 489 77 9 5626 6105 691513582 691513097 5.110000e-107 399.0
28 TraesCS2D01G362600 chr2A 86.316 190 26 0 7107 7296 608611896 608611707 3.320000e-49 207.0
29 TraesCS2D01G362600 chr2A 90.226 133 8 3 7437 7566 608611473 608611343 1.570000e-37 169.0
30 TraesCS2D01G362600 chr2A 97.778 90 2 0 1 90 608633205 608633116 1.220000e-33 156.0
31 TraesCS2D01G362600 chr2A 87.050 139 11 4 2982 3115 758699960 758699824 5.680000e-32 150.0
32 TraesCS2D01G362600 chr2A 92.473 93 7 0 2918 3010 608611570 608611478 5.720000e-27 134.0
33 TraesCS2D01G362600 chr1A 84.234 1814 243 22 3119 4919 563798749 563796966 0.000000e+00 1725.0
34 TraesCS2D01G362600 chr1A 95.513 156 6 1 4946 5100 241516767 241516922 1.960000e-61 248.0
35 TraesCS2D01G362600 chr1A 86.232 138 14 3 2982 3115 563798953 563798817 2.640000e-30 145.0
36 TraesCS2D01G362600 chr7A 84.225 1813 242 29 3119 4918 7819361 7821142 0.000000e+00 1724.0
37 TraesCS2D01G362600 chr7A 83.776 1806 249 28 3119 4910 86113492 86115267 0.000000e+00 1672.0
38 TraesCS2D01G362600 chr7A 83.672 1819 251 31 3115 4919 176238269 176236483 0.000000e+00 1672.0
39 TraesCS2D01G362600 chr7A 82.783 999 145 13 3930 4919 700483429 700482449 0.000000e+00 867.0
40 TraesCS2D01G362600 chr7A 86.299 489 58 6 5125 5606 86115388 86115874 2.910000e-144 523.0
41 TraesCS2D01G362600 chr7A 85.890 489 60 6 5125 5606 7821255 7821741 6.290000e-141 512.0
42 TraesCS2D01G362600 chr7A 86.008 486 59 6 5128 5606 700482334 700481851 6.290000e-141 512.0
43 TraesCS2D01G362600 chr7A 80.671 507 78 16 5630 6122 176233760 176234260 8.610000e-100 375.0
44 TraesCS2D01G362600 chr7A 80.550 509 78 16 5630 6122 86118191 86117688 1.110000e-98 372.0
45 TraesCS2D01G362600 chr7A 78.692 474 76 16 6162 6617 311246558 311246092 8.920000e-75 292.0
46 TraesCS2D01G362600 chr7A 85.915 142 13 4 2979 3115 735831559 735831698 2.640000e-30 145.0
47 TraesCS2D01G362600 chr6D 83.903 1814 245 29 3119 4919 158436445 158438224 0.000000e+00 1688.0
48 TraesCS2D01G362600 chr6D 82.556 1823 233 34 3119 4919 434474677 434472918 0.000000e+00 1526.0
49 TraesCS2D01G362600 chr6D 81.349 504 73 19 5635 6122 158441207 158440709 3.080000e-104 390.0
50 TraesCS2D01G362600 chr3B 83.572 1814 254 27 3119 4919 22102609 22104391 0.000000e+00 1659.0
51 TraesCS2D01G362600 chr3B 98.039 51 0 1 8496 8546 649978345 649978394 4.520000e-13 87.9
52 TraesCS2D01G362600 chr3B 90.000 40 4 0 5087 5126 140265026 140265065 1.600000e-02 52.8
53 TraesCS2D01G362600 chr3B 96.774 31 1 0 5099 5129 260428740 260428710 1.600000e-02 52.8
54 TraesCS2D01G362600 chr3B 96.774 31 1 0 5099 5129 260442991 260442961 1.600000e-02 52.8
55 TraesCS2D01G362600 chr3A 83.645 1816 243 32 3115 4917 424082152 424083926 0.000000e+00 1659.0
56 TraesCS2D01G362600 chr3A 94.231 156 8 1 4946 5100 735212908 735213063 4.240000e-58 237.0
57 TraesCS2D01G362600 chr3A 88.889 126 9 4 2992 3115 701179491 701179613 5.680000e-32 150.0
58 TraesCS2D01G362600 chr1B 83.471 1815 256 29 3119 4919 375418587 375416803 0.000000e+00 1650.0
59 TraesCS2D01G362600 chr1B 83.407 1814 256 28 3119 4919 566045586 566043805 0.000000e+00 1640.0
60 TraesCS2D01G362600 chr1B 91.525 59 3 2 8488 8546 322104644 322104588 7.560000e-11 80.5
61 TraesCS2D01G362600 chr3D 83.636 1815 234 34 3119 4919 305893196 305894961 0.000000e+00 1648.0
62 TraesCS2D01G362600 chr3D 94.872 156 7 1 4946 5100 596658538 596658693 9.110000e-60 243.0
63 TraesCS2D01G362600 chr1D 83.495 1751 227 35 3119 4856 492441443 492439742 0.000000e+00 1576.0
64 TraesCS2D01G362600 chr1D 81.559 526 73 17 5613 6122 492436975 492437492 6.560000e-111 412.0
65 TraesCS2D01G362600 chr1D 91.525 59 4 1 8488 8546 6335606 6335549 7.560000e-11 80.5
66 TraesCS2D01G362600 chr6A 83.676 1605 221 21 3326 4919 116965964 116964390 0.000000e+00 1474.0
67 TraesCS2D01G362600 chr6A 86.434 1091 128 12 3119 4203 608737158 608736082 0.000000e+00 1177.0
68 TraesCS2D01G362600 chr6A 86.200 500 54 10 5128 5619 581719142 581718650 2.250000e-145 527.0
69 TraesCS2D01G362600 chr6A 86.420 486 57 6 5128 5606 576385370 576384887 2.910000e-144 523.0
70 TraesCS2D01G362600 chr6A 85.802 486 60 6 5128 5606 116964275 116963792 2.930000e-139 507.0
71 TraesCS2D01G362600 chr6A 89.431 123 6 4 2982 3099 116983719 116983599 2.040000e-31 148.0
72 TraesCS2D01G362600 chr6B 82.821 1170 162 20 3766 4919 657625439 657624293 0.000000e+00 1011.0
73 TraesCS2D01G362600 chr6B 83.788 660 86 11 3119 3769 657642233 657641586 2.810000e-169 606.0
74 TraesCS2D01G362600 chr6B 80.792 505 75 17 5630 6118 52773095 52773593 8.610000e-100 375.0
75 TraesCS2D01G362600 chr6B 94.444 162 8 1 4946 5106 18746342 18746181 1.960000e-61 248.0
76 TraesCS2D01G362600 chr6B 94.444 54 1 2 8492 8545 89141844 89141895 2.100000e-11 82.4
77 TraesCS2D01G362600 chrUn 85.993 821 98 10 3119 3935 83365519 83364712 0.000000e+00 863.0
78 TraesCS2D01G362600 chrUn 95.513 156 6 1 4946 5100 411196670 411196825 1.960000e-61 248.0
79 TraesCS2D01G362600 chr5D 83.160 867 122 14 3119 3975 503109778 503108926 0.000000e+00 771.0
80 TraesCS2D01G362600 chr5D 94.231 156 8 1 4946 5100 503305593 503305748 4.240000e-58 237.0
81 TraesCS2D01G362600 chr5D 78.947 342 66 6 2520 2858 503110413 503110075 2.550000e-55 228.0
82 TraesCS2D01G362600 chr5A 86.299 489 58 6 5125 5606 608956324 608956810 2.910000e-144 523.0
83 TraesCS2D01G362600 chr5A 85.890 489 60 6 5125 5606 669756209 669756695 6.290000e-141 512.0
84 TraesCS2D01G362600 chr5B 85.685 489 61 6 5125 5606 507630372 507630858 2.930000e-139 507.0
85 TraesCS2D01G362600 chr5B 80.906 508 76 16 5630 6122 507632877 507632376 1.850000e-101 381.0
86 TraesCS2D01G362600 chr5B 88.889 126 9 4 2992 3115 497456307 497456429 5.680000e-32 150.0
87 TraesCS2D01G362600 chr7B 94.969 159 4 4 4946 5100 137678579 137678737 7.040000e-61 246.0
88 TraesCS2D01G362600 chr4D 93.210 162 10 1 4946 5106 206977640 206977479 4.240000e-58 237.0
89 TraesCS2D01G362600 chr7D 85.915 142 13 4 2979 3115 11328839 11328978 2.640000e-30 145.0
90 TraesCS2D01G362600 chr7D 96.154 52 1 1 8495 8546 98275767 98275817 5.840000e-12 84.2
91 TraesCS2D01G362600 chr7D 94.444 54 2 1 8493 8546 11673511 11673459 2.100000e-11 82.4
92 TraesCS2D01G362600 chr4B 85.816 141 14 4 2979 3115 658530072 658529934 2.640000e-30 145.0
93 TraesCS2D01G362600 chr4A 88.571 70 5 2 8499 8568 95374508 95374442 2.100000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G362600 chr2D 468765003 468774086 9083 True 16776.000000 16776 100.000000 1 9084 1 chr2D.!!$R1 9083
1 TraesCS2D01G362600 chr2D 468767469 468768432 963 False 1072.000000 1072 87.058000 5655 6618 1 chr2D.!!$F1 963
2 TraesCS2D01G362600 chr2D 548441165 548441665 500 True 403.000000 403 81.548000 5613 6105 1 chr2D.!!$R2 492
3 TraesCS2D01G362600 chr2D 548441131 548441796 665 False 357.000000 357 77.530000 6140 6765 1 chr2D.!!$F2 625
4 TraesCS2D01G362600 chr2B 546944163 546945048 885 False 957.000000 957 86.526000 5648 6523 1 chr2B.!!$F1 875
5 TraesCS2D01G362600 chr2B 546938456 546952427 13971 True 818.384615 2868 92.312692 612 9084 13 chr2B.!!$R2 8472
6 TraesCS2D01G362600 chr2B 546973445 546974143 698 True 577.500000 778 95.618500 1 616 2 chr2B.!!$R3 615
7 TraesCS2D01G362600 chr2A 608616388 608620390 4002 True 2092.500000 2676 89.872000 790 4405 2 chr2A.!!$R4 3615
8 TraesCS2D01G362600 chr2A 102036940 102038723 1783 False 1731.000000 1731 84.289000 3119 4919 1 chr2A.!!$F1 1800
9 TraesCS2D01G362600 chr2A 608632118 608633205 1087 True 509.500000 863 93.434500 1 791 2 chr2A.!!$R5 790
10 TraesCS2D01G362600 chr2A 608608864 608611896 3032 True 462.000000 1026 89.504400 2918 9084 5 chr2A.!!$R3 6166
11 TraesCS2D01G362600 chr1A 563796966 563798953 1987 True 935.000000 1725 85.233000 2982 4919 2 chr1A.!!$R1 1937
12 TraesCS2D01G362600 chr7A 176236483 176238269 1786 True 1672.000000 1672 83.672000 3115 4919 1 chr7A.!!$R2 1804
13 TraesCS2D01G362600 chr7A 7819361 7821741 2380 False 1118.000000 1724 85.057500 3119 5606 2 chr7A.!!$F3 2487
14 TraesCS2D01G362600 chr7A 86113492 86115874 2382 False 1097.500000 1672 85.037500 3119 5606 2 chr7A.!!$F4 2487
15 TraesCS2D01G362600 chr7A 700481851 700483429 1578 True 689.500000 867 84.395500 3930 5606 2 chr7A.!!$R4 1676
16 TraesCS2D01G362600 chr7A 176233760 176234260 500 False 375.000000 375 80.671000 5630 6122 1 chr7A.!!$F1 492
17 TraesCS2D01G362600 chr7A 86117688 86118191 503 True 372.000000 372 80.550000 5630 6122 1 chr7A.!!$R1 492
18 TraesCS2D01G362600 chr6D 158436445 158438224 1779 False 1688.000000 1688 83.903000 3119 4919 1 chr6D.!!$F1 1800
19 TraesCS2D01G362600 chr6D 434472918 434474677 1759 True 1526.000000 1526 82.556000 3119 4919 1 chr6D.!!$R2 1800
20 TraesCS2D01G362600 chr3B 22102609 22104391 1782 False 1659.000000 1659 83.572000 3119 4919 1 chr3B.!!$F1 1800
21 TraesCS2D01G362600 chr3A 424082152 424083926 1774 False 1659.000000 1659 83.645000 3115 4917 1 chr3A.!!$F1 1802
22 TraesCS2D01G362600 chr1B 375416803 375418587 1784 True 1650.000000 1650 83.471000 3119 4919 1 chr1B.!!$R2 1800
23 TraesCS2D01G362600 chr1B 566043805 566045586 1781 True 1640.000000 1640 83.407000 3119 4919 1 chr1B.!!$R3 1800
24 TraesCS2D01G362600 chr3D 305893196 305894961 1765 False 1648.000000 1648 83.636000 3119 4919 1 chr3D.!!$F1 1800
25 TraesCS2D01G362600 chr1D 492439742 492441443 1701 True 1576.000000 1576 83.495000 3119 4856 1 chr1D.!!$R2 1737
26 TraesCS2D01G362600 chr1D 492436975 492437492 517 False 412.000000 412 81.559000 5613 6122 1 chr1D.!!$F1 509
27 TraesCS2D01G362600 chr6A 608736082 608737158 1076 True 1177.000000 1177 86.434000 3119 4203 1 chr6A.!!$R4 1084
28 TraesCS2D01G362600 chr6A 116963792 116965964 2172 True 990.500000 1474 84.739000 3326 5606 2 chr6A.!!$R5 2280
29 TraesCS2D01G362600 chr6B 657624293 657625439 1146 True 1011.000000 1011 82.821000 3766 4919 1 chr6B.!!$R2 1153
30 TraesCS2D01G362600 chr6B 657641586 657642233 647 True 606.000000 606 83.788000 3119 3769 1 chr6B.!!$R3 650
31 TraesCS2D01G362600 chrUn 83364712 83365519 807 True 863.000000 863 85.993000 3119 3935 1 chrUn.!!$R1 816
32 TraesCS2D01G362600 chr5D 503108926 503110413 1487 True 499.500000 771 81.053500 2520 3975 2 chr5D.!!$R1 1455
33 TraesCS2D01G362600 chr5B 507632376 507632877 501 True 381.000000 381 80.906000 5630 6122 1 chr5B.!!$R1 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 1061 0.373716 CGCTGAAAGGTACGGCATTC 59.626 55.0 0.00 0.00 39.31 2.67 F
1927 2751 0.249238 GGTACAGAGGATCAGCTGCG 60.249 60.0 9.47 0.00 37.82 5.18 F
2580 3411 0.037790 TGGCGTTGACGATGTGATGA 60.038 50.0 7.85 0.00 43.02 2.92 F
2879 3750 0.112218 CCATCAAGGAACCCACACCA 59.888 55.0 0.00 0.00 41.22 4.17 F
4461 7515 0.387929 TGTCGACACAGACAAGGTCC 59.612 55.0 15.76 0.00 46.81 4.46 F
4666 7724 1.439353 CCATTCGTCTTCCATGGCGG 61.439 60.0 6.96 1.83 31.32 6.13 F
6286 9529 0.463654 AGCCGAAGTGCAACAACAGA 60.464 50.0 0.00 0.00 41.43 3.41 F
7203 11247 0.029567 CAGGCTCGGTGTAGTCGATC 59.970 60.0 0.00 0.00 36.01 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 3343 1.526575 AAACCACCCTCTGCGCATTG 61.527 55.000 12.24 6.68 0.00 2.82 R
2859 3730 0.112412 GGTGTGGGTTCCTTGATGGT 59.888 55.000 0.00 0.00 37.07 3.55 R
4064 7107 1.250328 TGCTGCATGAAACCAAGAGG 58.750 50.000 0.00 0.00 42.21 3.69 R
4836 7898 1.614317 CCCTTCCCGTGCAAGAAGAAT 60.614 52.381 19.00 0.00 41.69 2.40 R
6014 9253 1.078848 GCGAGGTCCACTTCATGCT 60.079 57.895 0.00 0.00 0.00 3.79 R
6526 9782 3.159353 TCATCACTGTAATTCCGACCG 57.841 47.619 0.00 0.00 0.00 4.79 R
7238 11282 0.107017 CTCCGGAATCAGGGCAATGT 60.107 55.000 5.23 0.00 0.00 2.71 R
8827 16500 0.654683 CCTAGATCGCAGCAGCAAAC 59.345 55.000 0.82 0.00 42.27 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 1.065926 TCGGTTCATTCATGCTCTGCT 60.066 47.619 0.00 0.00 0.00 4.24
174 493 1.825090 TGGTGTCCAAGCTAAGCATG 58.175 50.000 0.00 0.00 0.00 4.06
175 494 1.073763 TGGTGTCCAAGCTAAGCATGT 59.926 47.619 0.00 0.00 0.00 3.21
176 495 1.470098 GGTGTCCAAGCTAAGCATGTG 59.530 52.381 0.00 0.00 0.00 3.21
177 496 2.426522 GTGTCCAAGCTAAGCATGTGA 58.573 47.619 0.00 0.00 0.00 3.58
178 497 2.813754 GTGTCCAAGCTAAGCATGTGAA 59.186 45.455 0.00 0.00 0.00 3.18
179 498 3.253188 GTGTCCAAGCTAAGCATGTGAAA 59.747 43.478 0.00 0.00 0.00 2.69
180 499 3.503363 TGTCCAAGCTAAGCATGTGAAAG 59.497 43.478 0.00 0.00 0.00 2.62
181 500 3.084039 TCCAAGCTAAGCATGTGAAAGG 58.916 45.455 0.00 0.00 0.00 3.11
182 501 2.165030 CCAAGCTAAGCATGTGAAAGGG 59.835 50.000 0.00 0.00 0.00 3.95
183 502 1.467920 AGCTAAGCATGTGAAAGGGC 58.532 50.000 0.00 0.00 0.00 5.19
242 561 9.545105 TTGAGCAATTCTTGTTAAATCATTTGT 57.455 25.926 0.00 0.00 0.00 2.83
243 562 9.545105 TGAGCAATTCTTGTTAAATCATTTGTT 57.455 25.926 0.00 0.00 0.00 2.83
316 637 4.171754 GAGAAATACGCACTTAACGACCT 58.828 43.478 0.00 0.00 0.00 3.85
410 732 7.065563 ACAAAAATTGCAAAGTCAGCATTACAA 59.934 29.630 1.71 0.00 42.33 2.41
652 1061 0.373716 CGCTGAAAGGTACGGCATTC 59.626 55.000 0.00 0.00 39.31 2.67
680 1089 4.876107 AGTCGTGAACAAAACTTGATGTCT 59.124 37.500 0.00 0.00 0.00 3.41
769 1178 9.425893 CAAGCAACATATACAAATAGTCTTTCG 57.574 33.333 0.00 0.00 0.00 3.46
886 1694 5.388599 AGAGGATTGTTATTGTAAGGGGG 57.611 43.478 0.00 0.00 0.00 5.40
976 1784 1.070134 CAACACCGAGTCTCCTTGGAA 59.930 52.381 2.99 0.00 44.19 3.53
977 1785 0.969894 ACACCGAGTCTCCTTGGAAG 59.030 55.000 2.99 0.00 44.19 3.46
980 1788 1.257743 CCGAGTCTCCTTGGAAGTCA 58.742 55.000 0.00 0.00 44.19 3.41
1041 1849 3.058160 CTCACCGCAGCAAAGGGG 61.058 66.667 5.56 5.56 46.27 4.79
1258 2069 2.579787 CGCTCTTCGCCAGGTACG 60.580 66.667 0.00 0.00 34.21 3.67
1301 2115 7.897575 TTCAATCTTCAGAGTAGAAAGAAGC 57.102 36.000 0.00 0.00 37.86 3.86
1302 2116 6.997655 TCAATCTTCAGAGTAGAAAGAAGCA 58.002 36.000 0.00 0.00 37.86 3.91
1303 2117 7.095910 TCAATCTTCAGAGTAGAAAGAAGCAG 58.904 38.462 0.00 0.00 37.86 4.24
1304 2118 6.603940 ATCTTCAGAGTAGAAAGAAGCAGT 57.396 37.500 0.00 0.00 37.86 4.40
1305 2119 5.777802 TCTTCAGAGTAGAAAGAAGCAGTG 58.222 41.667 0.00 0.00 37.86 3.66
1306 2120 4.527509 TCAGAGTAGAAAGAAGCAGTGG 57.472 45.455 0.00 0.00 0.00 4.00
1307 2121 2.999355 CAGAGTAGAAAGAAGCAGTGGC 59.001 50.000 0.00 0.00 41.61 5.01
1337 2154 7.492669 GCAGTAGTAGTTTGCTCTGATGATTTA 59.507 37.037 0.00 0.00 35.05 1.40
1353 2170 9.687210 CTGATGATTTAATCCATGTTGTATTGG 57.313 33.333 2.22 0.00 0.00 3.16
1378 2195 3.325135 CCTAGCATCCGGATCTAGGTTTT 59.675 47.826 34.44 10.93 42.69 2.43
1421 2238 7.161404 AGTTGATATGTGAGAGTGCTTTTGTA 58.839 34.615 0.00 0.00 0.00 2.41
1427 2244 6.304356 TGTGAGAGTGCTTTTGTAAGAATG 57.696 37.500 0.00 0.00 32.92 2.67
1492 2309 6.021596 GCGATTCAGAAATAAACGTGAATGT 58.978 36.000 1.29 0.00 39.25 2.71
1494 2311 7.690637 GCGATTCAGAAATAAACGTGAATGTTA 59.309 33.333 1.29 0.00 39.25 2.41
1667 2487 5.897377 AACCACCTGTGTATTATTTCAGC 57.103 39.130 0.00 0.00 0.00 4.26
1721 2545 7.148188 TGCTATGACAATCATCCTTGTTTTCTC 60.148 37.037 0.00 0.00 39.40 2.87
1743 2567 7.957002 TCTCATGGAGTCTAATCTTTGTATCC 58.043 38.462 0.00 0.00 0.00 2.59
1783 2607 4.002982 TGATAGTTCCATGTGCAAGTCAC 58.997 43.478 0.00 0.00 45.82 3.67
1801 2625 4.686554 AGTCACGAGCTGTTCTTTAATCAC 59.313 41.667 0.00 0.00 0.00 3.06
1927 2751 0.249238 GGTACAGAGGATCAGCTGCG 60.249 60.000 9.47 0.00 37.82 5.18
1954 2780 5.646360 GCCAGGTGCACTATTTCTACTTTTA 59.354 40.000 17.98 0.00 40.77 1.52
1996 2822 1.826385 ATTTCCCTTGCTCACCTTCG 58.174 50.000 0.00 0.00 0.00 3.79
2049 2875 3.181468 TGGATCAGATGCTAGAACTGCAG 60.181 47.826 13.48 13.48 44.04 4.41
2066 2892 2.558795 TGCAGAGTCTTCTACTGGTGTC 59.441 50.000 0.00 0.00 39.07 3.67
2187 3014 7.698836 AGTGTTGTTTTATCAAAGTGAATGC 57.301 32.000 0.00 0.00 0.00 3.56
2208 3035 6.164417 TGCGCCAAGTCTAGGTAAATATAA 57.836 37.500 4.18 0.00 0.00 0.98
2292 3121 4.062293 TCGGTGTAAGTCAATGAAACCAG 58.938 43.478 0.00 0.00 0.00 4.00
2335 3164 2.690653 TTTGGTCAAGCCTCACCCCG 62.691 60.000 0.00 0.00 38.35 5.73
2490 3321 6.025749 TGACATTATAGGATCGTAAGCCTG 57.974 41.667 0.00 0.00 35.73 4.85
2512 3343 4.580167 TGGCATTAGATCACCTAATTGCAC 59.420 41.667 0.00 0.00 43.63 4.57
2580 3411 0.037790 TGGCGTTGACGATGTGATGA 60.038 50.000 7.85 0.00 43.02 2.92
2689 3520 2.444421 GAACAGAGGTCGAAGGAGGTA 58.556 52.381 0.00 0.00 0.00 3.08
2709 3580 1.503818 TTCCTGTCGCAAAACGCTCC 61.504 55.000 0.00 0.00 43.23 4.70
2726 3597 5.197451 ACGCTCCTATAGATCAGATTAGGG 58.803 45.833 0.00 0.00 33.47 3.53
2855 3726 1.000717 CACAATTGGTTTGGGTCGTCC 60.001 52.381 10.83 0.00 39.80 4.79
2865 3736 4.368003 GGTCGTCCCCTACCATCA 57.632 61.111 0.00 0.00 35.73 3.07
2866 3737 2.599216 GGTCGTCCCCTACCATCAA 58.401 57.895 0.00 0.00 35.73 2.57
2868 3739 0.464452 GTCGTCCCCTACCATCAAGG 59.536 60.000 0.00 0.00 45.67 3.61
2869 3740 0.337082 TCGTCCCCTACCATCAAGGA 59.663 55.000 0.00 0.00 41.22 3.36
2870 3741 1.200519 CGTCCCCTACCATCAAGGAA 58.799 55.000 0.00 0.00 41.22 3.36
2871 3742 1.134491 CGTCCCCTACCATCAAGGAAC 60.134 57.143 0.00 0.00 41.22 3.62
2873 3744 0.551396 CCCCTACCATCAAGGAACCC 59.449 60.000 0.00 0.00 41.22 4.11
2874 3745 1.295020 CCCTACCATCAAGGAACCCA 58.705 55.000 0.00 0.00 41.22 4.51
2876 3747 1.633432 CCTACCATCAAGGAACCCACA 59.367 52.381 0.00 0.00 41.22 4.17
2877 3748 2.618045 CCTACCATCAAGGAACCCACAC 60.618 54.545 0.00 0.00 41.22 3.82
2878 3749 0.112412 ACCATCAAGGAACCCACACC 59.888 55.000 0.00 0.00 41.22 4.16
2879 3750 0.112218 CCATCAAGGAACCCACACCA 59.888 55.000 0.00 0.00 41.22 4.17
2881 3752 0.850100 ATCAAGGAACCCACACCACA 59.150 50.000 0.00 0.00 0.00 4.17
2882 3753 0.626382 TCAAGGAACCCACACCACAA 59.374 50.000 0.00 0.00 0.00 3.33
2883 3754 1.216678 TCAAGGAACCCACACCACAAT 59.783 47.619 0.00 0.00 0.00 2.71
2896 3767 1.036707 CCACAATTGGTTTGGGTCGT 58.963 50.000 10.83 0.00 36.98 4.34
2922 3793 1.166531 CCAGGGCGCATTAGTTAGGC 61.167 60.000 10.83 0.00 0.00 3.93
2935 3806 2.627933 AGTTAGGCTCAAAGGGGTACA 58.372 47.619 0.00 0.00 0.00 2.90
3049 4184 1.899142 GGCTCAACTTTTGGCCCATTA 59.101 47.619 0.00 0.00 39.55 1.90
3089 4224 3.929610 GCAAAGTAAGGTGTTGCAACAAA 59.070 39.130 32.61 16.10 45.51 2.83
3105 4240 5.148568 GCAACAAACCAATGAAATGCAATC 58.851 37.500 0.00 0.00 32.41 2.67
3106 4241 5.277876 GCAACAAACCAATGAAATGCAATCA 60.278 36.000 7.88 7.88 32.41 2.57
3344 6375 6.488769 TCTTGTTACTCACCTAGAAAACCA 57.511 37.500 0.00 0.00 0.00 3.67
3407 6438 5.686753 TGTTGTGTACCACTTTAAGTCCAT 58.313 37.500 0.00 0.00 35.11 3.41
3495 6527 4.106029 TCGTAGTTTGTAGATGAGGCAC 57.894 45.455 0.00 0.00 0.00 5.01
3556 6588 8.692710 TCCTCGAGTGAGTGTAAACATATAATT 58.307 33.333 12.31 0.00 40.85 1.40
3585 6617 6.367374 TGGATTTCTTACTATCCACACACA 57.633 37.500 0.00 0.00 44.04 3.72
3764 6801 1.470458 CCGGTTACGAAAGCTAGGTCC 60.470 57.143 0.00 0.00 44.60 4.46
4023 7064 2.499693 TCAATGCCAAGGACATACGAGA 59.500 45.455 0.00 0.00 0.00 4.04
4192 7238 6.695292 ATGCAGTCGTTCATTTCATTTTTC 57.305 33.333 0.00 0.00 0.00 2.29
4341 7392 4.929211 TCGGTTGAGTCATGTAAACATCTG 59.071 41.667 0.00 0.00 33.61 2.90
4346 7397 5.474825 TGAGTCATGTAAACATCTGCGTTA 58.525 37.500 0.00 0.00 33.61 3.18
4379 7430 7.148423 CCATTCAAGAATGTCATCTTAACGTCA 60.148 37.037 18.47 0.00 44.97 4.35
4453 7504 3.111853 AGAATGCTTTGTCGACACAGA 57.888 42.857 30.70 17.81 32.71 3.41
4461 7515 0.387929 TGTCGACACAGACAAGGTCC 59.612 55.000 15.76 0.00 46.81 4.46
4514 7568 3.922910 ACCTTTTACTACAAGTCTCGCC 58.077 45.455 0.00 0.00 0.00 5.54
4515 7569 3.259902 CCTTTTACTACAAGTCTCGCCC 58.740 50.000 0.00 0.00 0.00 6.13
4541 7596 3.059800 CCTTTCGACGTTCTCTTTGGAAC 60.060 47.826 0.00 0.00 41.31 3.62
4615 7672 2.158885 GGCTCCATCAGGAACTTCTACC 60.159 54.545 0.00 0.00 45.19 3.18
4666 7724 1.439353 CCATTCGTCTTCCATGGCGG 61.439 60.000 6.96 1.83 31.32 6.13
4670 7728 2.825836 GTCTTCCATGGCGGGCAG 60.826 66.667 6.96 2.38 34.36 4.85
4740 7798 2.108168 TCTTCTACCTTCCCCATGTCG 58.892 52.381 0.00 0.00 0.00 4.35
4836 7898 8.334263 TCTCACATGCTCATTAATTTGTACAA 57.666 30.769 3.59 3.59 0.00 2.41
4877 7939 2.510613 CAAGGATTAACACCGGGTTGT 58.489 47.619 6.32 0.00 40.73 3.32
4952 8064 6.676990 AGGTGTCTCATGCATATTATCTCA 57.323 37.500 0.00 0.00 0.00 3.27
4963 8075 4.572389 GCATATTATCTCACGCTATTGGGG 59.428 45.833 0.00 0.00 0.00 4.96
4967 8079 1.788229 TCTCACGCTATTGGGGATCA 58.212 50.000 0.00 0.00 0.00 2.92
4998 8110 3.356290 ACCAACCCAAGACATGCTTATC 58.644 45.455 0.00 0.00 34.31 1.75
5026 8138 8.403236 GGCTTTATGTATTAACGATTGGAAAGT 58.597 33.333 0.00 0.00 0.00 2.66
5030 8142 6.397831 TGTATTAACGATTGGAAAGTGTCG 57.602 37.500 0.00 0.00 39.78 4.35
5044 8156 2.688507 AGTGTCGAGGTATTTGTGCAG 58.311 47.619 0.00 0.00 0.00 4.41
5115 8248 6.854886 ATAATAATGATGATGACGACGACG 57.145 37.500 5.58 5.58 45.75 5.12
5118 8251 2.105323 TGATGATGACGACGACGATG 57.895 50.000 15.32 0.00 42.66 3.84
5121 8254 2.105323 TGATGACGACGACGATGATG 57.895 50.000 15.32 0.00 42.66 3.07
5122 8255 1.668751 TGATGACGACGACGATGATGA 59.331 47.619 15.32 0.00 42.66 2.92
5140 8309 1.915489 TGATGGCTGGAACATACACCT 59.085 47.619 0.00 0.00 38.20 4.00
5149 8318 2.482721 GGAACATACACCTGTTTGTCCG 59.517 50.000 2.52 0.00 38.85 4.79
5161 8330 4.159377 TGTTTGTCCGCAAGATCAATTC 57.841 40.909 0.00 0.00 43.02 2.17
5422 8598 1.595109 TGTGCTCGGTGCTGACTTG 60.595 57.895 3.53 0.00 43.37 3.16
5483 8661 4.483950 CCTCCATCCATAGACTTACTGGA 58.516 47.826 4.21 4.21 42.95 3.86
5582 8760 3.624777 AGGTTCACCAGGCATTGAATAG 58.375 45.455 0.00 0.00 38.89 1.73
5585 8763 3.719268 TCACCAGGCATTGAATAGTGT 57.281 42.857 0.00 0.00 0.00 3.55
5592 8770 5.010314 CCAGGCATTGAATAGTGTGCAATAT 59.990 40.000 0.00 0.00 39.27 1.28
5593 8771 6.207221 CCAGGCATTGAATAGTGTGCAATATA 59.793 38.462 0.00 0.00 39.27 0.86
5594 8772 7.303261 CAGGCATTGAATAGTGTGCAATATAG 58.697 38.462 0.00 0.00 39.27 1.31
5607 8785 8.584157 AGTGTGCAATATAGTTCCATTTTCAAA 58.416 29.630 0.00 0.00 0.00 2.69
5608 8786 8.647226 GTGTGCAATATAGTTCCATTTTCAAAC 58.353 33.333 0.00 0.00 0.00 2.93
5619 8797 8.567104 AGTTCCATTTTCAAACAAATTTATGCC 58.433 29.630 0.00 0.00 0.00 4.40
5649 8830 9.537192 AATGTCTGTCATTTTATGGCATAATTG 57.463 29.630 19.88 18.70 44.93 2.32
5801 9027 9.920946 TCCATTAATTCCTTACTTATTTCTGCT 57.079 29.630 0.00 0.00 0.00 4.24
5936 9175 4.610605 TTATGACAACTTCCGAACCTCA 57.389 40.909 0.00 0.00 0.00 3.86
6014 9253 1.225855 CTGTTGTTGCACTTCGGCTA 58.774 50.000 0.00 0.00 34.04 3.93
6050 9289 3.811083 TCGCTTTGAGGGAAAGTAAACA 58.189 40.909 0.00 0.00 42.85 2.83
6211 9453 1.024579 GGTCAACATACCCAGTGGCG 61.025 60.000 2.61 0.00 33.02 5.69
6286 9529 0.463654 AGCCGAAGTGCAACAACAGA 60.464 50.000 0.00 0.00 41.43 3.41
6342 9585 2.808543 GTGGCTCGATGTTCTTGAAACT 59.191 45.455 0.00 0.00 0.00 2.66
6359 9602 4.889409 TGAAACTGCAAGGATCAGAAGTTT 59.111 37.500 14.50 14.50 39.77 2.66
6453 9697 9.590451 CCTATGTTGCTTTGATCAATTTGTATT 57.410 29.630 9.40 0.00 0.00 1.89
6540 9796 3.259064 ACAATGTCGGTCGGAATTACAG 58.741 45.455 0.00 0.00 0.00 2.74
6650 9918 9.524106 AACATTGACATAGACATTAATTGCATG 57.476 29.630 0.00 0.00 0.00 4.06
6675 9962 8.359642 TGTTCTTTTTGGTTCCATTCTATTGAG 58.640 33.333 0.00 0.00 0.00 3.02
6794 10091 9.736023 ATAAATAAAGAGAAAATCGCATGGAAC 57.264 29.630 0.00 0.00 0.00 3.62
6853 10150 0.324645 ATTCGGCCCAGCAGGAAAAT 60.325 50.000 0.00 0.00 38.24 1.82
6887 10184 1.905637 AACAATCCTTCCGGGTCAAC 58.094 50.000 0.00 0.00 36.25 3.18
6897 10194 1.153046 CGGGTCAACACAACCTGGT 60.153 57.895 0.00 0.00 39.16 4.00
6910 10207 1.077212 CCTGGTTCTCAGCCCATGG 60.077 63.158 4.14 4.14 42.05 3.66
6920 10217 3.223226 GCCCATGGCCAGAATTGG 58.777 61.111 13.05 14.30 44.06 3.16
6921 10218 1.686800 GCCCATGGCCAGAATTGGT 60.687 57.895 19.49 0.00 46.80 3.67
7053 11095 7.559897 GGATCTAATCTAGGCATAAGTAGCTCT 59.440 40.741 0.00 0.00 0.00 4.09
7056 11098 5.975693 ATCTAGGCATAAGTAGCTCTGAC 57.024 43.478 0.00 0.00 0.00 3.51
7075 11118 7.308229 GCTCTGACACCATTGTTGGATATAATC 60.308 40.741 0.00 0.00 46.92 1.75
7113 11156 2.438411 AGGATCGTAAGCCTAGGATCG 58.562 52.381 14.75 7.46 44.82 3.69
7143 11186 0.458669 GGGAGCAGCCATTGATGTTG 59.541 55.000 0.00 0.00 38.95 3.33
7158 11201 0.739462 TGTTGACGATGCGATGTCCC 60.739 55.000 0.00 0.00 34.18 4.46
7159 11202 1.518352 TTGACGATGCGATGTCCCG 60.518 57.895 0.00 0.00 34.18 5.14
7203 11247 0.029567 CAGGCTCGGTGTAGTCGATC 59.970 60.000 0.00 0.00 36.01 3.69
7204 11248 1.009900 GGCTCGGTGTAGTCGATCG 60.010 63.158 9.36 9.36 36.01 3.69
7205 11249 1.654743 GCTCGGTGTAGTCGATCGC 60.655 63.158 11.09 5.80 36.01 4.58
7206 11250 1.719709 CTCGGTGTAGTCGATCGCA 59.280 57.895 11.09 0.00 36.01 5.10
7207 11251 0.316278 CTCGGTGTAGTCGATCGCAG 60.316 60.000 11.09 0.00 36.01 5.18
7208 11252 1.939785 CGGTGTAGTCGATCGCAGC 60.940 63.158 11.09 11.14 0.00 5.25
7209 11253 1.138883 GGTGTAGTCGATCGCAGCA 59.861 57.895 11.09 3.87 0.00 4.41
7210 11254 0.867753 GGTGTAGTCGATCGCAGCAG 60.868 60.000 11.09 0.00 0.00 4.24
7211 11255 0.098905 GTGTAGTCGATCGCAGCAGA 59.901 55.000 11.09 0.00 0.00 4.26
7212 11256 1.025041 TGTAGTCGATCGCAGCAGAT 58.975 50.000 11.09 0.00 0.00 2.90
7227 11271 1.152247 AGATAGCGGCATCCCTCCA 60.152 57.895 1.45 0.00 0.00 3.86
7253 11297 0.749454 AGCGACATTGCCCTGATTCC 60.749 55.000 0.00 0.00 34.65 3.01
7275 11319 2.501723 GGAGCAGATGTTGGAGGTCTTA 59.498 50.000 0.00 0.00 0.00 2.10
7276 11320 3.055094 GGAGCAGATGTTGGAGGTCTTAA 60.055 47.826 0.00 0.00 0.00 1.85
7296 11340 4.776322 TCGCACAATGCTCCCCCG 62.776 66.667 0.00 0.00 42.25 5.73
7297 11341 4.776322 CGCACAATGCTCCCCCGA 62.776 66.667 0.00 0.00 42.25 5.14
7316 11407 2.592897 CGAACGTGAACAGGTTAGATCG 59.407 50.000 11.81 8.40 39.23 3.69
7433 11524 0.321919 GGGGTCAAAGGGGTACGAAC 60.322 60.000 0.00 0.00 0.00 3.95
7434 11525 0.671472 GGGTCAAAGGGGTACGAACG 60.671 60.000 0.00 0.00 0.00 3.95
7534 11701 2.936919 ACAACAGATTCAGTCAGGCA 57.063 45.000 0.00 0.00 0.00 4.75
7880 12078 2.262423 ACCTGAGTTTGAGGTTCTGC 57.738 50.000 0.00 0.00 41.31 4.26
7909 12107 5.975988 ACACACCATCTATCCTATTTGGT 57.024 39.130 0.00 0.00 41.27 3.67
7950 12148 4.566004 TCAGCAGTGGTTGTAGACAATAC 58.434 43.478 0.00 2.14 38.24 1.89
8043 12244 2.483014 TCCTTACAACCATGGGAACG 57.517 50.000 18.09 3.48 0.00 3.95
8126 12327 6.373774 TGATCACAACTGCAAATTTTGGTTTT 59.626 30.769 10.96 0.00 0.00 2.43
8129 12330 7.746929 TCACAACTGCAAATTTTGGTTTTTAG 58.253 30.769 10.96 0.00 0.00 1.85
8138 12339 7.486551 GCAAATTTTGGTTTTTAGGGTTGAAAC 59.513 33.333 10.96 0.00 33.63 2.78
8142 12343 5.845391 TGGTTTTTAGGGTTGAAACAGAG 57.155 39.130 0.00 0.00 35.53 3.35
8260 13362 6.338937 ACCAGAATACTCATCGTTTTAGGTC 58.661 40.000 0.00 0.00 0.00 3.85
8261 13363 5.753921 CCAGAATACTCATCGTTTTAGGTCC 59.246 44.000 0.00 0.00 0.00 4.46
8262 13364 6.407074 CCAGAATACTCATCGTTTTAGGTCCT 60.407 42.308 0.00 0.00 0.00 3.85
8263 13365 7.201884 CCAGAATACTCATCGTTTTAGGTCCTA 60.202 40.741 0.00 0.00 0.00 2.94
8264 13366 8.361139 CAGAATACTCATCGTTTTAGGTCCTAT 58.639 37.037 0.00 0.00 0.00 2.57
8265 13367 8.361139 AGAATACTCATCGTTTTAGGTCCTATG 58.639 37.037 0.00 0.00 0.00 2.23
8266 13368 7.834881 ATACTCATCGTTTTAGGTCCTATGA 57.165 36.000 0.00 0.00 0.00 2.15
8267 13369 6.732896 ACTCATCGTTTTAGGTCCTATGAT 57.267 37.500 0.00 0.00 0.00 2.45
8268 13370 7.125792 ACTCATCGTTTTAGGTCCTATGATT 57.874 36.000 0.00 0.00 0.00 2.57
8269 13371 7.565680 ACTCATCGTTTTAGGTCCTATGATTT 58.434 34.615 0.00 0.00 0.00 2.17
8270 13372 7.495934 ACTCATCGTTTTAGGTCCTATGATTTG 59.504 37.037 0.00 0.00 0.00 2.32
8291 13413 3.330701 TGCCTTTTAGGTCTGTTGGAGAT 59.669 43.478 0.00 0.00 37.80 2.75
8300 13422 4.593206 AGGTCTGTTGGAGATGTTTCTGTA 59.407 41.667 0.00 0.00 31.63 2.74
8307 13432 6.013379 TGTTGGAGATGTTTCTGTATTCTCCT 60.013 38.462 15.96 0.00 41.87 3.69
8308 13433 6.227298 TGGAGATGTTTCTGTATTCTCCTC 57.773 41.667 15.96 0.00 41.87 3.71
8309 13434 5.129485 TGGAGATGTTTCTGTATTCTCCTCC 59.871 44.000 15.96 0.00 41.87 4.30
8352 15972 4.134563 GAGTACACATTTTCACACCCAGT 58.865 43.478 0.00 0.00 0.00 4.00
8356 15976 3.882888 ACACATTTTCACACCCAGTACTG 59.117 43.478 16.34 16.34 0.00 2.74
8382 16002 1.069906 GCTAGAAGGCAACAACACACG 60.070 52.381 0.00 0.00 41.41 4.49
8402 16022 1.676006 GTTGAGTTGGTGACTTGGTGG 59.324 52.381 0.00 0.00 39.19 4.61
8407 16028 0.467290 TTGGTGACTTGGTGGGAAGC 60.467 55.000 0.00 0.00 0.00 3.86
8412 16033 0.321653 GACTTGGTGGGAAGCGTCAT 60.322 55.000 1.14 0.00 0.00 3.06
8426 16047 2.852413 AGCGTCATCACTCGTTTTATCG 59.148 45.455 0.00 0.00 0.00 2.92
8497 16122 6.183360 TGTTTCATCCTGCTTGAATCTTTGTT 60.183 34.615 0.00 0.00 33.37 2.83
8517 16142 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
8638 16285 0.179084 TGATGGATTTCCCGCTCGAC 60.179 55.000 0.00 0.00 37.93 4.20
8654 16301 3.635836 GCTCGACCCTTAAGTAGGTACAT 59.364 47.826 3.65 0.00 43.07 2.29
8670 16341 9.201989 AGTAGGTACATGAAAGAACATCAGATA 57.798 33.333 0.00 0.00 0.00 1.98
8699 16370 0.343372 TGAATCCAGGGCCTAGGACT 59.657 55.000 21.94 14.45 36.60 3.85
8779 16452 4.088648 GGTCGCATGAATTTAGTTTCACG 58.911 43.478 0.00 0.00 38.37 4.35
8781 16454 4.549599 GTCGCATGAATTTAGTTTCACGTG 59.450 41.667 9.94 9.94 38.37 4.49
8793 16466 5.418310 AGTTTCACGTGACAAAATGGTAG 57.582 39.130 19.90 0.00 0.00 3.18
8794 16467 4.879545 AGTTTCACGTGACAAAATGGTAGT 59.120 37.500 19.90 0.00 0.00 2.73
8795 16468 4.804608 TTCACGTGACAAAATGGTAGTG 57.195 40.909 19.90 0.00 0.00 2.74
8827 16500 6.435904 AGCTCTAGTTAATATAGCTGTGGGAG 59.564 42.308 0.00 0.00 41.15 4.30
8867 16557 3.546218 GGCGCTAGTTACATTGCTTAAGC 60.546 47.826 20.84 20.84 42.50 3.09
8874 16564 1.453155 ACATTGCTTAAGCGTCCCAG 58.547 50.000 21.97 10.92 45.83 4.45
8949 16639 1.069296 GCTTCACTTGTATTGCACGCA 60.069 47.619 0.00 0.00 0.00 5.24
8951 16641 3.626977 CTTCACTTGTATTGCACGCAAA 58.373 40.909 8.76 0.00 39.55 3.68
8952 16642 3.699779 TCACTTGTATTGCACGCAAAA 57.300 38.095 8.76 0.00 39.55 2.44
8954 16644 2.725723 CACTTGTATTGCACGCAAAAGG 59.274 45.455 8.76 1.39 39.55 3.11
8955 16645 2.288152 ACTTGTATTGCACGCAAAAGGG 60.288 45.455 8.76 1.78 39.55 3.95
8956 16646 1.323412 TGTATTGCACGCAAAAGGGT 58.677 45.000 8.76 0.00 39.55 4.34
8957 16647 1.000827 TGTATTGCACGCAAAAGGGTG 60.001 47.619 8.76 8.13 39.55 4.61
8958 16648 1.000717 GTATTGCACGCAAAAGGGTGT 60.001 47.619 8.76 0.00 39.55 4.16
8985 16686 7.421599 TCTTATCAGTATTCTTCTCTTGCTCG 58.578 38.462 0.00 0.00 0.00 5.03
9034 16735 7.759489 ATTTACCGCACATCCATATTTGTAT 57.241 32.000 0.00 0.00 0.00 2.29
9060 16761 8.112822 TCCCAACTTCATATCCAAGATAAACAA 58.887 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 493 1.139163 CAAAATGCACGCCCTTTCAC 58.861 50.000 0.00 0.00 0.00 3.18
175 494 1.035923 TCAAAATGCACGCCCTTTCA 58.964 45.000 0.00 0.00 0.00 2.69
176 495 1.994779 CATCAAAATGCACGCCCTTTC 59.005 47.619 0.00 0.00 0.00 2.62
177 496 1.617850 TCATCAAAATGCACGCCCTTT 59.382 42.857 0.00 0.00 32.58 3.11
178 497 1.255882 TCATCAAAATGCACGCCCTT 58.744 45.000 0.00 0.00 32.58 3.95
179 498 1.067635 GTTCATCAAAATGCACGCCCT 60.068 47.619 0.00 0.00 32.58 5.19
180 499 1.067635 AGTTCATCAAAATGCACGCCC 60.068 47.619 0.00 0.00 34.65 6.13
181 500 1.987770 CAGTTCATCAAAATGCACGCC 59.012 47.619 0.00 0.00 34.65 5.68
182 501 2.932498 TCAGTTCATCAAAATGCACGC 58.068 42.857 0.00 0.00 34.65 5.34
183 502 7.565450 TTTAATCAGTTCATCAAAATGCACG 57.435 32.000 0.00 0.00 34.65 5.34
316 637 3.207778 CTGAGTTTTGTAACCGGTCCAA 58.792 45.455 8.04 11.84 34.71 3.53
410 732 8.147704 ACGTAATTCATGATCTTTTGGGTTTTT 58.852 29.630 0.00 0.00 0.00 1.94
652 1061 1.063469 AGTTTTGTTCACGACTTGCCG 59.937 47.619 0.00 0.00 0.00 5.69
874 1681 5.966684 TCAAGGTTTTTCCCCCTTACAATA 58.033 37.500 0.00 0.00 39.04 1.90
886 1694 6.019881 CACGACCTCAAAATTCAAGGTTTTTC 60.020 38.462 7.55 0.00 43.43 2.29
977 1785 2.750888 GCGAATTGGCCGAGGTGAC 61.751 63.158 0.14 0.00 0.00 3.67
980 1788 2.436646 CAGCGAATTGGCCGAGGT 60.437 61.111 9.00 0.00 0.00 3.85
1041 1849 1.586154 CCAATCCTGACACGCCCAAC 61.586 60.000 0.00 0.00 0.00 3.77
1264 2078 8.114331 TCTGAAGATTGAAATTGCATAACAGT 57.886 30.769 0.00 0.00 0.00 3.55
1282 2096 5.279206 CCACTGCTTCTTTCTACTCTGAAGA 60.279 44.000 0.00 0.00 38.42 2.87
1301 2115 1.821753 ACTACTACTGCTCAGCCACTG 59.178 52.381 0.00 0.00 0.00 3.66
1302 2116 2.223803 ACTACTACTGCTCAGCCACT 57.776 50.000 0.00 0.00 0.00 4.00
1303 2117 2.996621 CAAACTACTACTGCTCAGCCAC 59.003 50.000 0.00 0.00 0.00 5.01
1304 2118 2.612972 GCAAACTACTACTGCTCAGCCA 60.613 50.000 0.00 0.00 33.20 4.75
1305 2119 2.003301 GCAAACTACTACTGCTCAGCC 58.997 52.381 0.00 0.00 33.20 4.85
1306 2120 2.966050 AGCAAACTACTACTGCTCAGC 58.034 47.619 0.00 0.00 42.73 4.26
1311 2125 4.748892 TCATCAGAGCAAACTACTACTGC 58.251 43.478 0.00 0.00 36.29 4.40
1312 2126 7.840342 AAATCATCAGAGCAAACTACTACTG 57.160 36.000 0.00 0.00 0.00 2.74
1337 2154 6.062095 GCTAGGTACCAATACAACATGGATT 58.938 40.000 15.94 0.00 39.12 3.01
1353 2170 3.018149 CCTAGATCCGGATGCTAGGTAC 58.982 54.545 34.44 18.75 43.96 3.34
1392 2209 6.047511 AGCACTCTCACATATCAACTTTCT 57.952 37.500 0.00 0.00 0.00 2.52
1401 2218 8.671921 CATTCTTACAAAAGCACTCTCACATAT 58.328 33.333 0.00 0.00 32.36 1.78
1421 2238 4.899352 ACAGCTCTCCAGTAACATTCTT 57.101 40.909 0.00 0.00 0.00 2.52
1427 2244 1.807142 GGCAAACAGCTCTCCAGTAAC 59.193 52.381 0.00 0.00 44.79 2.50
1492 2309 9.541884 AAGCCAACCCTAGAAAATAAAGAATAA 57.458 29.630 0.00 0.00 0.00 1.40
1494 2311 7.673926 TCAAGCCAACCCTAGAAAATAAAGAAT 59.326 33.333 0.00 0.00 0.00 2.40
1721 2545 7.961351 AGAGGATACAAAGATTAGACTCCATG 58.039 38.462 0.00 0.00 41.41 3.66
1743 2567 8.514330 AACTATCACTCTAGTAGTTTGGAGAG 57.486 38.462 0.00 0.00 41.06 3.20
1783 2607 4.647291 AACGTGATTAAAGAACAGCTCG 57.353 40.909 0.00 0.00 0.00 5.03
1801 2625 3.980646 TGTGGGTTTGATTCTGAAACG 57.019 42.857 0.00 0.00 34.67 3.60
2007 2833 8.972127 TGATCCATTGCTACTATCTATCTAACC 58.028 37.037 0.00 0.00 0.00 2.85
2039 2865 4.702612 CCAGTAGAAGACTCTGCAGTTCTA 59.297 45.833 14.67 15.79 36.79 2.10
2049 2875 2.159680 CGTCGACACCAGTAGAAGACTC 60.160 54.545 17.16 0.00 35.64 3.36
2066 2892 4.147653 CACTTTACCTGACTGTTAACGTCG 59.852 45.833 18.80 14.83 34.17 5.12
2158 2984 8.958119 TCACTTTGATAAAACAACACTAGTCT 57.042 30.769 0.00 0.00 0.00 3.24
2187 3014 7.883217 TCTCTTATATTTACCTAGACTTGGCG 58.117 38.462 2.53 0.00 0.00 5.69
2208 3035 5.792741 CAGTCTCACCAGAAATTTCTCTCT 58.207 41.667 17.91 6.19 34.74 3.10
2292 3121 4.499037 AACCGCTCAAAGACATAAAACC 57.501 40.909 0.00 0.00 0.00 3.27
2408 3237 4.437682 AAAAACATCTCAGACCTGTCCA 57.562 40.909 0.00 0.00 0.00 4.02
2444 3275 8.462016 GTCATGCCTAATGAATTATATCCAACC 58.538 37.037 0.00 0.00 46.90 3.77
2490 3321 4.580167 TGTGCAATTAGGTGATCTAATGCC 59.420 41.667 13.46 4.08 45.24 4.40
2512 3343 1.526575 AAACCACCCTCTGCGCATTG 61.527 55.000 12.24 6.68 0.00 2.82
2580 3411 2.360350 CATCAAGCAGGCACGGGT 60.360 61.111 0.00 0.00 34.57 5.28
2662 3493 1.874019 CGACCTCTGTTCCGATGCG 60.874 63.158 0.00 0.00 0.00 4.73
2666 3497 0.251033 TCCTTCGACCTCTGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
2701 3532 6.153680 CCCTAATCTGATCTATAGGAGCGTTT 59.846 42.308 13.20 0.00 37.67 3.60
2709 3580 9.094578 TCTCAAAACCCCTAATCTGATCTATAG 57.905 37.037 0.00 0.00 0.00 1.31
2726 3597 2.100197 GCCCCCTACAATCTCAAAACC 58.900 52.381 0.00 0.00 0.00 3.27
2855 3726 1.064685 GTGGGTTCCTTGATGGTAGGG 60.065 57.143 0.00 0.00 37.07 3.53
2856 3727 1.633432 TGTGGGTTCCTTGATGGTAGG 59.367 52.381 0.00 0.00 37.07 3.18
2857 3728 2.618045 GGTGTGGGTTCCTTGATGGTAG 60.618 54.545 0.00 0.00 37.07 3.18
2858 3729 1.353022 GGTGTGGGTTCCTTGATGGTA 59.647 52.381 0.00 0.00 37.07 3.25
2859 3730 0.112412 GGTGTGGGTTCCTTGATGGT 59.888 55.000 0.00 0.00 37.07 3.55
2861 3732 1.247567 GTGGTGTGGGTTCCTTGATG 58.752 55.000 0.00 0.00 0.00 3.07
2863 3734 0.626382 TTGTGGTGTGGGTTCCTTGA 59.374 50.000 0.00 0.00 0.00 3.02
2864 3735 1.703411 ATTGTGGTGTGGGTTCCTTG 58.297 50.000 0.00 0.00 0.00 3.61
2865 3736 2.038659 CAATTGTGGTGTGGGTTCCTT 58.961 47.619 0.00 0.00 0.00 3.36
2866 3737 1.703411 CAATTGTGGTGTGGGTTCCT 58.297 50.000 0.00 0.00 0.00 3.36
2877 3748 4.224678 GGACGACCCAAACCAATTGTGG 62.225 54.545 4.43 5.67 42.30 4.17
2878 3749 1.000717 GGACGACCCAAACCAATTGTG 60.001 52.381 4.43 0.00 37.32 3.33
2879 3750 1.324383 GGACGACCCAAACCAATTGT 58.676 50.000 4.43 0.00 37.32 2.71
2901 3772 1.408266 CCTAACTAATGCGCCCTGGTT 60.408 52.381 4.18 8.89 0.00 3.67
2912 3783 4.786454 TGTACCCCTTTGAGCCTAACTAAT 59.214 41.667 0.00 0.00 0.00 1.73
2922 3793 2.292292 CCAACGTTTGTACCCCTTTGAG 59.708 50.000 0.00 0.00 0.00 3.02
2958 3829 6.115450 CGAAGGGTAACTTAACATTAAGGC 57.885 41.667 14.34 5.67 43.38 4.35
3089 4224 3.995705 CGGTTTGATTGCATTTCATTGGT 59.004 39.130 1.14 0.00 0.00 3.67
3105 4240 2.111162 TGGGACAACTTGCGGTTTG 58.889 52.632 0.00 0.00 35.74 2.93
3106 4241 4.668151 TGGGACAACTTGCGGTTT 57.332 50.000 0.00 0.00 35.74 3.27
3291 6322 4.853507 CTGCCAAGCACATTGACG 57.146 55.556 0.00 0.00 41.83 4.35
3344 6375 8.492673 ACATTGTATTGTGATAATGAACTCGT 57.507 30.769 0.00 0.00 35.21 4.18
3407 6438 7.722728 AGCTATATGGCTGAAGAATTTCATTCA 59.277 33.333 13.43 5.42 42.19 2.57
3495 6527 4.425577 AAAGCTCCAAGCAAACGATAAG 57.574 40.909 1.29 0.00 45.56 1.73
3522 6554 3.769844 ACACTCACTCGAGGAACCATATT 59.230 43.478 18.41 0.00 44.17 1.28
3585 6617 4.774660 ATTCAGACTCTGATCTTGCCAT 57.225 40.909 9.63 0.00 40.39 4.40
3764 6801 1.695893 CTCAAGTATGTGCACGCCCG 61.696 60.000 13.13 0.00 0.00 6.13
4023 7064 4.895889 TGATATGAAGGATCTCGGTGAAGT 59.104 41.667 0.00 0.00 0.00 3.01
4064 7107 1.250328 TGCTGCATGAAACCAAGAGG 58.750 50.000 0.00 0.00 42.21 3.69
4206 7252 7.893124 ACCTCAAGTTCGATAAGGTTATAGA 57.107 36.000 0.00 0.00 37.01 1.98
4207 7253 8.081025 GGTACCTCAAGTTCGATAAGGTTATAG 58.919 40.741 4.06 0.00 40.69 1.31
4267 7318 9.553064 AACATATGGCATGTTGTTTAAAGAAAA 57.447 25.926 19.04 0.00 40.37 2.29
4341 7392 3.896122 TCTTGAATGGCAACTTTAACGC 58.104 40.909 0.00 0.00 33.47 4.84
4346 7397 5.534207 TGACATTCTTGAATGGCAACTTT 57.466 34.783 24.54 5.07 44.63 2.66
4423 7474 5.469760 TCGACAAAGCATTCTTTCAGAATCA 59.530 36.000 0.00 0.00 42.67 2.57
4453 7504 5.454966 GGGTCAATTATAATGGGACCTTGT 58.545 41.667 29.94 3.15 40.64 3.16
4461 7515 5.075067 AGAGGGAAGGGGTCAATTATAATGG 59.925 44.000 0.00 0.00 0.00 3.16
4615 7672 3.438087 AGCTCAATGATGTTTCGGACTTG 59.562 43.478 0.00 0.00 0.00 3.16
4666 7724 1.700955 AAATCATCCAGATGGCTGCC 58.299 50.000 12.87 12.87 40.91 4.85
4705 7763 6.419791 AGGTAGAAGATCCGACCTCATATAG 58.580 44.000 0.00 0.00 37.83 1.31
4836 7898 1.614317 CCCTTCCCGTGCAAGAAGAAT 60.614 52.381 19.00 0.00 41.69 2.40
4858 7920 2.510613 CACAACCCGGTGTTAATCCTT 58.489 47.619 0.00 0.00 34.69 3.36
4877 7939 6.268617 AGGATTCTCAATCTAATGACGATCCA 59.731 38.462 12.80 0.00 37.75 3.41
4952 8064 3.758554 GCAAATATGATCCCCAATAGCGT 59.241 43.478 0.00 0.00 0.00 5.07
4963 8075 3.880490 TGGGTTGGTACGCAAATATGATC 59.120 43.478 0.00 0.00 43.34 2.92
4998 8110 5.467399 TCCAATCGTTAATACATAAAGCCCG 59.533 40.000 0.00 0.00 0.00 6.13
5026 8138 2.831685 ACTGCACAAATACCTCGACA 57.168 45.000 0.00 0.00 0.00 4.35
5103 8236 2.384899 TCATCATCGTCGTCGTCATC 57.615 50.000 1.33 0.00 38.33 2.92
5106 8239 1.399572 CCATCATCATCGTCGTCGTC 58.600 55.000 1.33 0.00 38.33 4.20
5108 8241 0.318191 AGCCATCATCATCGTCGTCG 60.318 55.000 0.00 0.00 38.55 5.12
5109 8242 1.135046 CAGCCATCATCATCGTCGTC 58.865 55.000 0.00 0.00 0.00 4.20
5111 8244 0.032540 TCCAGCCATCATCATCGTCG 59.967 55.000 0.00 0.00 0.00 5.12
5112 8245 1.869767 GTTCCAGCCATCATCATCGTC 59.130 52.381 0.00 0.00 0.00 4.20
5114 8247 1.957668 TGTTCCAGCCATCATCATCG 58.042 50.000 0.00 0.00 0.00 3.84
5115 8248 4.214971 GTGTATGTTCCAGCCATCATCATC 59.785 45.833 0.00 0.00 0.00 2.92
5118 8251 2.880890 GGTGTATGTTCCAGCCATCATC 59.119 50.000 0.00 0.00 0.00 2.92
5121 8254 2.292267 CAGGTGTATGTTCCAGCCATC 58.708 52.381 0.00 0.00 0.00 3.51
5122 8255 1.635487 ACAGGTGTATGTTCCAGCCAT 59.365 47.619 0.00 0.00 0.00 4.40
5140 8309 3.057596 GGAATTGATCTTGCGGACAAACA 60.058 43.478 0.00 0.00 34.74 2.83
5149 8318 3.279434 ACGTTAGGGGAATTGATCTTGC 58.721 45.455 0.00 0.00 0.00 4.01
5161 8330 1.616865 TGAAGTCACTGACGTTAGGGG 59.383 52.381 10.01 2.42 37.67 4.79
5288 8461 5.382664 AAGTTGGACCCAAAGAGAGTTAA 57.617 39.130 2.62 0.00 37.70 2.01
5331 8507 2.633509 GGCTGCCCTGCTGAAGTTG 61.634 63.158 7.66 0.00 0.00 3.16
5333 8509 4.357279 GGGCTGCCCTGCTGAAGT 62.357 66.667 30.42 0.00 41.34 3.01
5422 8598 3.760684 ACATCTTGAATCTTGCTCCAACC 59.239 43.478 0.00 0.00 0.00 3.77
5582 8760 8.647226 GTTTGAAAATGGAACTATATTGCACAC 58.353 33.333 0.00 0.00 0.00 3.82
5585 8763 9.770097 TTTGTTTGAAAATGGAACTATATTGCA 57.230 25.926 0.00 0.00 0.00 4.08
5593 8771 8.567104 GGCATAAATTTGTTTGAAAATGGAACT 58.433 29.630 0.00 0.00 30.21 3.01
5594 8772 8.348507 TGGCATAAATTTGTTTGAAAATGGAAC 58.651 29.630 0.00 0.00 30.21 3.62
5607 8785 6.938507 ACAGACATTGATGGCATAAATTTGT 58.061 32.000 7.37 5.48 38.64 2.83
5608 8786 7.036829 TGACAGACATTGATGGCATAAATTTG 58.963 34.615 7.37 9.03 38.64 2.32
5619 8797 6.566141 TGCCATAAAATGACAGACATTGATG 58.434 36.000 0.00 6.39 46.90 3.07
5936 9175 2.749621 GGCTCGATGTTCTTGAAACCAT 59.250 45.455 0.00 0.00 0.00 3.55
6014 9253 1.078848 GCGAGGTCCACTTCATGCT 60.079 57.895 0.00 0.00 0.00 3.79
6050 9289 4.222810 GTGGCATCCTTTTTAGTTCCCATT 59.777 41.667 0.00 0.00 0.00 3.16
6342 9585 7.707624 ATTATGAAAACTTCTGATCCTTGCA 57.292 32.000 0.00 0.00 0.00 4.08
6463 9707 5.704354 TGCCCAACAGTGATATAATTGGAT 58.296 37.500 9.01 0.00 42.04 3.41
6526 9782 3.159353 TCATCACTGTAATTCCGACCG 57.841 47.619 0.00 0.00 0.00 4.79
6626 9894 9.524106 AACATGCAATTAATGTCTATGTCAATG 57.476 29.630 6.44 0.00 37.27 2.82
6650 9918 8.576442 TCTCAATAGAATGGAACCAAAAAGAAC 58.424 33.333 0.00 0.00 0.00 3.01
6686 9973 8.142994 AGCCAGAAAATATGTCGTAAACTATG 57.857 34.615 0.00 0.00 0.00 2.23
6783 10080 5.009010 GTCCTAAATTGATGTTCCATGCGAT 59.991 40.000 0.00 0.00 0.00 4.58
6784 10081 4.335315 GTCCTAAATTGATGTTCCATGCGA 59.665 41.667 0.00 0.00 0.00 5.10
6794 10091 7.601705 ATGGGTTATTGGTCCTAAATTGATG 57.398 36.000 0.00 0.00 0.00 3.07
6877 10174 1.147376 CAGGTTGTGTTGACCCGGA 59.853 57.895 0.73 0.00 37.93 5.14
6878 10175 1.896660 CCAGGTTGTGTTGACCCGG 60.897 63.158 0.00 0.00 37.93 5.73
6879 10176 0.750182 AACCAGGTTGTGTTGACCCG 60.750 55.000 3.18 0.00 37.93 5.28
6883 10180 2.917933 CTGAGAACCAGGTTGTGTTGA 58.082 47.619 10.47 0.00 39.23 3.18
6887 10184 0.890996 GGGCTGAGAACCAGGTTGTG 60.891 60.000 10.47 0.00 43.13 3.33
6924 10221 8.200364 TGATTAACGCCCTATGTTAAAGTAAC 57.800 34.615 2.83 0.00 42.95 2.50
6937 10979 3.508845 ATGCCTATTGATTAACGCCCT 57.491 42.857 0.00 0.00 0.00 5.19
7039 11081 2.168521 TGGTGTCAGAGCTACTTATGCC 59.831 50.000 0.00 0.00 0.00 4.40
7075 11118 5.237996 CGATCCTATAATGCATGCCTAATGG 59.762 44.000 16.68 10.49 36.71 3.16
7092 11135 3.008813 ACGATCCTAGGCTTACGATCCTA 59.991 47.826 18.10 0.00 34.02 2.94
7093 11136 2.224818 ACGATCCTAGGCTTACGATCCT 60.225 50.000 18.10 0.00 36.51 3.24
7113 11156 1.032114 GCTGCTCCCATTGGTGGTAC 61.032 60.000 1.20 0.00 44.48 3.34
7143 11186 2.104331 ACGGGACATCGCATCGTC 59.896 61.111 0.00 0.00 0.00 4.20
7158 11201 2.387309 CCTACATCAAGCAGGCACG 58.613 57.895 0.00 0.00 0.00 5.34
7186 11229 1.009900 CGATCGACTACACCGAGCC 60.010 63.158 10.26 0.00 39.00 4.70
7205 11249 1.670406 GGGATGCCGCTATCTGCTG 60.670 63.158 0.00 0.00 40.11 4.41
7206 11250 1.825281 GAGGGATGCCGCTATCTGCT 61.825 60.000 0.00 0.00 40.11 4.24
7207 11251 1.375268 GAGGGATGCCGCTATCTGC 60.375 63.158 0.00 0.00 35.55 4.26
7208 11252 1.294780 GGAGGGATGCCGCTATCTG 59.705 63.158 6.99 0.00 35.55 2.90
7209 11253 0.546267 ATGGAGGGATGCCGCTATCT 60.546 55.000 6.99 0.00 35.55 1.98
7210 11254 0.392193 CATGGAGGGATGCCGCTATC 60.392 60.000 6.99 0.00 35.55 2.08
7211 11255 1.681666 CATGGAGGGATGCCGCTAT 59.318 57.895 6.99 3.10 35.55 2.97
7212 11256 3.150949 CATGGAGGGATGCCGCTA 58.849 61.111 6.99 0.15 35.55 4.26
7227 11271 4.183686 GCAATGTCGCTGGCGCAT 62.184 61.111 10.83 13.19 39.59 4.73
7237 11281 0.107214 TCCGGAATCAGGGCAATGTC 60.107 55.000 0.00 0.00 0.00 3.06
7238 11282 0.107017 CTCCGGAATCAGGGCAATGT 60.107 55.000 5.23 0.00 0.00 2.71
7244 11288 0.250209 CATCTGCTCCGGAATCAGGG 60.250 60.000 24.79 16.92 0.00 4.45
7253 11297 0.460987 GACCTCCAACATCTGCTCCG 60.461 60.000 0.00 0.00 0.00 4.63
7296 11340 3.364023 CACGATCTAACCTGTTCACGTTC 59.636 47.826 0.00 0.00 0.00 3.95
7297 11341 3.314553 CACGATCTAACCTGTTCACGTT 58.685 45.455 0.00 0.00 0.00 3.99
7357 11448 0.118346 TGTGGTGTAGGTCCCCTGAT 59.882 55.000 0.00 0.00 34.61 2.90
7398 11489 2.047655 CCAACTAACGCGCCCTGA 60.048 61.111 5.73 0.00 0.00 3.86
7433 11524 1.871080 AGAGTTCTCACAAGCCAACG 58.129 50.000 2.64 0.00 0.00 4.10
7434 11525 3.067833 GGTAGAGTTCTCACAAGCCAAC 58.932 50.000 2.64 0.00 0.00 3.77
7534 11701 1.598130 GTGCGGCTCAGTTTCTGGT 60.598 57.895 0.00 0.00 31.51 4.00
7880 12078 3.711704 AGGATAGATGGTGTGTAAGGGTG 59.288 47.826 0.00 0.00 0.00 4.61
7950 12148 9.770097 ACATCAACAGTTCAGATAGTATTATGG 57.230 33.333 0.00 0.00 0.00 2.74
7962 12160 2.736721 CCCACGTACATCAACAGTTCAG 59.263 50.000 0.00 0.00 0.00 3.02
8087 12288 7.095060 GCAGTTGTGATCATCAGAGAGTTTAAA 60.095 37.037 0.00 0.00 0.00 1.52
8260 13362 5.888161 ACAGACCTAAAAGGCAAATCATAGG 59.112 40.000 0.00 0.00 39.63 2.57
8261 13363 7.253422 CAACAGACCTAAAAGGCAAATCATAG 58.747 38.462 0.00 0.00 39.63 2.23
8262 13364 6.152661 CCAACAGACCTAAAAGGCAAATCATA 59.847 38.462 0.00 0.00 39.63 2.15
8263 13365 5.047092 CCAACAGACCTAAAAGGCAAATCAT 60.047 40.000 0.00 0.00 39.63 2.45
8264 13366 4.280677 CCAACAGACCTAAAAGGCAAATCA 59.719 41.667 0.00 0.00 39.63 2.57
8265 13367 4.522789 TCCAACAGACCTAAAAGGCAAATC 59.477 41.667 0.00 0.00 39.63 2.17
8266 13368 4.479158 TCCAACAGACCTAAAAGGCAAAT 58.521 39.130 0.00 0.00 39.63 2.32
8267 13369 3.888930 CTCCAACAGACCTAAAAGGCAAA 59.111 43.478 0.00 0.00 39.63 3.68
8268 13370 3.137544 TCTCCAACAGACCTAAAAGGCAA 59.862 43.478 0.00 0.00 39.63 4.52
8269 13371 2.708861 TCTCCAACAGACCTAAAAGGCA 59.291 45.455 0.00 0.00 39.63 4.75
8270 13372 3.418684 TCTCCAACAGACCTAAAAGGC 57.581 47.619 0.00 0.00 39.63 4.35
8291 13413 5.544176 AGAACTGGAGGAGAATACAGAAACA 59.456 40.000 0.00 0.00 35.08 2.83
8300 13422 8.386264 TGATAAAAGAAAGAACTGGAGGAGAAT 58.614 33.333 0.00 0.00 0.00 2.40
8307 13432 6.837312 TCAGGTGATAAAAGAAAGAACTGGA 58.163 36.000 0.00 0.00 0.00 3.86
8308 13433 6.712547 ACTCAGGTGATAAAAGAAAGAACTGG 59.287 38.462 0.00 0.00 0.00 4.00
8309 13434 7.736447 ACTCAGGTGATAAAAGAAAGAACTG 57.264 36.000 0.00 0.00 0.00 3.16
8352 15972 2.546899 TGCCTTCTAGCCTTTCCAGTA 58.453 47.619 0.00 0.00 0.00 2.74
8356 15976 2.200373 TGTTGCCTTCTAGCCTTTCC 57.800 50.000 0.00 0.00 0.00 3.13
8382 16002 1.676006 CCACCAAGTCACCAACTCAAC 59.324 52.381 0.00 0.00 37.17 3.18
8402 16022 1.429463 AAACGAGTGATGACGCTTCC 58.571 50.000 0.00 0.00 36.96 3.46
8407 16028 3.849708 TCACGATAAAACGAGTGATGACG 59.150 43.478 0.00 0.00 38.52 4.35
8412 16033 7.310664 ACTATCTTTCACGATAAAACGAGTGA 58.689 34.615 0.00 0.00 41.24 3.41
8426 16047 5.819901 CCATTCTGGGAAGACTATCTTTCAC 59.180 44.000 0.00 0.00 36.73 3.18
8497 16122 2.852714 TGGGACGGAGGGAGTATTTA 57.147 50.000 0.00 0.00 0.00 1.40
8654 16301 7.855375 AGATCCAACTATCTGATGTTCTTTCA 58.145 34.615 0.00 0.00 34.87 2.69
8670 16341 2.357569 GCCCTGGATTCAAGATCCAACT 60.358 50.000 8.89 0.00 46.50 3.16
8699 16370 1.985159 ACTTGTTATCTGGGAGGCACA 59.015 47.619 0.00 0.00 0.00 4.57
8779 16452 3.058224 GCCTCACACTACCATTTTGTCAC 60.058 47.826 0.00 0.00 0.00 3.67
8781 16454 3.146066 TGCCTCACACTACCATTTTGTC 58.854 45.455 0.00 0.00 0.00 3.18
8793 16466 3.594603 TTAACTAGAGCTGCCTCACAC 57.405 47.619 0.00 0.00 40.68 3.82
8794 16467 6.294787 GCTATATTAACTAGAGCTGCCTCACA 60.295 42.308 0.00 0.00 40.74 3.58
8795 16468 6.096695 GCTATATTAACTAGAGCTGCCTCAC 58.903 44.000 0.00 0.00 40.74 3.51
8827 16500 0.654683 CCTAGATCGCAGCAGCAAAC 59.345 55.000 0.82 0.00 42.27 2.93
8874 16564 5.932303 TGATAAGCCAAACACTAACAGTCTC 59.068 40.000 0.00 0.00 0.00 3.36
8951 16641 9.440761 AGAAGAATACTGATAAGATACACCCTT 57.559 33.333 0.00 0.00 0.00 3.95
8952 16642 9.084533 GAGAAGAATACTGATAAGATACACCCT 57.915 37.037 0.00 0.00 0.00 4.34
8956 16646 9.973450 GCAAGAGAAGAATACTGATAAGATACA 57.027 33.333 0.00 0.00 0.00 2.29
8985 16686 6.926313 ACTAACTTCAGAGTATCCAGAACAC 58.074 40.000 0.00 0.00 34.21 3.32
9034 16735 7.638444 TGTTTATCTTGGATATGAAGTTGGGA 58.362 34.615 0.00 0.00 0.00 4.37
9060 16761 6.274322 AGACCTCTAGTATCCTGACTGAAT 57.726 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.