Multiple sequence alignment - TraesCS2D01G362500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G362500 chr2D 100.000 8863 0 0 1 8863 468756306 468765168 0.000000e+00 16367.0
1 TraesCS2D01G362500 chr2D 95.495 111 5 0 8562 8672 111321404 111321514 2.540000e-40 178.0
2 TraesCS2D01G362500 chr2A 95.738 4294 132 25 1338 5594 608601111 608605390 0.000000e+00 6868.0
3 TraesCS2D01G362500 chr2A 90.442 1402 93 25 6073 7446 608605998 608607386 0.000000e+00 1808.0
4 TraesCS2D01G362500 chr2A 87.986 874 58 10 7733 8566 608607964 608608830 0.000000e+00 989.0
5 TraesCS2D01G362500 chr2A 97.882 425 7 2 917 1341 608599786 608600208 0.000000e+00 734.0
6 TraesCS2D01G362500 chr2A 89.591 538 45 7 183 719 608598999 608599526 0.000000e+00 673.0
7 TraesCS2D01G362500 chr2A 96.403 278 10 0 5593 5870 608605550 608605827 8.110000e-125 459.0
8 TraesCS2D01G362500 chr2A 94.483 290 14 1 7447 7734 608607594 608607883 6.310000e-121 446.0
9 TraesCS2D01G362500 chr2A 90.335 269 24 1 8 276 608598793 608599059 1.420000e-92 351.0
10 TraesCS2D01G362500 chr2A 94.787 211 11 0 710 920 608599547 608599757 6.630000e-86 329.0
11 TraesCS2D01G362500 chr2A 88.462 208 9 4 8668 8863 608608834 608609038 4.140000e-58 237.0
12 TraesCS2D01G362500 chr2A 94.690 113 6 0 8564 8676 753616756 753616644 9.150000e-40 176.0
13 TraesCS2D01G362500 chr2A 93.548 93 5 1 5874 5966 608605909 608606000 4.320000e-28 137.0
14 TraesCS2D01G362500 chr2A 84.211 95 9 3 1 95 552061766 552061854 4.410000e-13 87.9
15 TraesCS2D01G362500 chr2A 91.803 61 5 0 181 241 608599030 608599090 1.590000e-12 86.1
16 TraesCS2D01G362500 chr2B 92.281 3744 223 38 3743 7446 546928326 546932043 0.000000e+00 5252.0
17 TraesCS2D01G362500 chr2B 93.918 1562 75 11 2103 3654 546841015 546842566 0.000000e+00 2340.0
18 TraesCS2D01G362500 chr2B 89.272 1072 69 22 7447 8479 546932247 546933311 0.000000e+00 1301.0
19 TraesCS2D01G362500 chr2B 91.176 884 49 20 947 1805 546925207 546926086 0.000000e+00 1173.0
20 TraesCS2D01G362500 chr2B 90.161 559 36 11 1561 2114 546840454 546840998 0.000000e+00 710.0
21 TraesCS2D01G362500 chr2B 89.399 566 47 7 1 561 546838272 546838829 0.000000e+00 701.0
22 TraesCS2D01G362500 chr2B 81.989 905 82 46 1858 2734 546926338 546927189 0.000000e+00 693.0
23 TraesCS2D01G362500 chr2B 95.539 269 9 2 3467 3732 546927941 546928209 2.290000e-115 427.0
24 TraesCS2D01G362500 chr2B 92.473 279 20 1 563 840 546839005 546839283 1.790000e-106 398.0
25 TraesCS2D01G362500 chr2B 80.460 609 46 32 2731 3320 546927350 546927904 1.790000e-106 398.0
26 TraesCS2D01G362500 chr2B 84.881 377 31 7 579 953 546924809 546925161 3.040000e-94 357.0
27 TraesCS2D01G362500 chr2B 95.070 142 6 1 8672 8813 546938430 546938570 1.160000e-53 222.0
28 TraesCS2D01G362500 chr2B 95.745 94 4 0 8473 8566 546938333 546938426 1.540000e-32 152.0
29 TraesCS2D01G362500 chr2B 90.625 64 6 0 279 342 546871247 546871310 1.590000e-12 86.1
30 TraesCS2D01G362500 chr2B 91.667 60 5 0 284 343 546886794 546886853 5.700000e-12 84.2
31 TraesCS2D01G362500 chr1B 96.330 109 4 0 8565 8673 113565230 113565122 7.070000e-41 180.0
32 TraesCS2D01G362500 chr1B 95.495 111 5 0 8563 8673 683469669 683469559 2.540000e-40 178.0
33 TraesCS2D01G362500 chr7D 95.495 111 5 0 8563 8673 382742535 382742645 2.540000e-40 178.0
34 TraesCS2D01G362500 chr7D 86.747 83 6 4 17 99 184484954 184484877 4.410000e-13 87.9
35 TraesCS2D01G362500 chr7D 79.381 97 15 5 1 96 491776884 491776976 7.430000e-06 63.9
36 TraesCS2D01G362500 chr6D 94.737 114 6 0 8558 8671 397359929 397359816 2.540000e-40 178.0
37 TraesCS2D01G362500 chr3B 94.017 117 7 0 8564 8680 822193334 822193218 2.540000e-40 178.0
38 TraesCS2D01G362500 chr5D 95.455 110 5 0 8565 8674 555341066 555341175 9.150000e-40 176.0
39 TraesCS2D01G362500 chr5D 90.164 61 3 1 38 98 307492407 307492350 9.540000e-10 76.8
40 TraesCS2D01G362500 chr6B 91.200 125 11 0 8549 8673 96342765 96342889 4.250000e-38 171.0
41 TraesCS2D01G362500 chr7B 84.694 98 10 4 2 99 153556852 153556760 9.470000e-15 93.5
42 TraesCS2D01G362500 chr7B 79.570 93 13 5 3 95 517317131 517317045 2.670000e-05 62.1
43 TraesCS2D01G362500 chr3A 79.167 96 14 6 1 96 714398352 714398441 2.670000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G362500 chr2D 468756306 468765168 8862 False 16367.000000 16367 100.000000 1 8863 1 chr2D.!!$F2 8862
1 TraesCS2D01G362500 chr2A 608598793 608609038 10245 False 1093.091667 6868 92.621667 8 8863 12 chr2A.!!$F2 8855
2 TraesCS2D01G362500 chr2B 546924809 546933311 8502 False 1371.571429 5252 87.942571 579 8479 7 chr2B.!!$F4 7900
3 TraesCS2D01G362500 chr2B 546838272 546842566 4294 False 1037.250000 2340 91.487750 1 3654 4 chr2B.!!$F3 3653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 891 0.239347 CCTGCTTCGGCTGAAACAAG 59.761 55.000 12.25 3.06 41.50 3.16 F
1454 2696 0.389391 AGTGTCAGACGGTGTTCCTG 59.611 55.000 0.00 0.00 0.00 3.86 F
3189 4958 0.185175 GGAACCAGACCAACTTGGGT 59.815 55.000 12.62 0.00 43.37 4.51 F
4702 6589 1.069022 CACGTGAAATGGCTGAACAGG 60.069 52.381 10.90 0.00 0.00 4.00 F
4834 6727 0.185901 AGTGCAGGCTTCCTTTCCAA 59.814 50.000 0.00 0.00 0.00 3.53 F
6658 8801 0.250338 ACCTCTTGTCCGGCAGTTTC 60.250 55.000 0.00 0.00 0.00 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 2764 0.035739 TGCCCTAGTTGGTCCGAAAC 59.964 55.000 0.00 0.00 0.00 2.78 R
3323 5094 1.956170 GTGCAGTCGTCACCACAGG 60.956 63.158 0.00 0.00 0.00 4.00 R
4804 6697 0.322008 GCCTGCACTGCCTCTTTAGT 60.322 55.000 0.00 0.00 0.00 2.24 R
6636 8779 0.320697 ACTGCCGGACAAGAGGTAAC 59.679 55.000 5.05 0.00 0.00 2.50 R
6732 8875 4.098914 AGGAGAGCCAAAATTGTACACA 57.901 40.909 0.00 0.00 36.29 3.72 R
8653 11168 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.960364 CATCGGTTGGACCTTGTGGG 60.960 60.000 0.00 0.00 35.66 4.61
60 62 2.178106 TGGGTGTGGTGGTTTCCTTTAT 59.822 45.455 0.00 0.00 0.00 1.40
61 63 3.236047 GGGTGTGGTGGTTTCCTTTATT 58.764 45.455 0.00 0.00 0.00 1.40
62 64 4.140994 TGGGTGTGGTGGTTTCCTTTATTA 60.141 41.667 0.00 0.00 0.00 0.98
103 105 4.572909 AGCCTTTTTCGGTAATACGTCTT 58.427 39.130 0.00 0.00 34.94 3.01
107 109 6.036408 GCCTTTTTCGGTAATACGTCTTGTAT 59.964 38.462 0.00 0.00 45.81 2.29
141 143 2.256117 TGTCGTCTCTGAGTGACTCA 57.744 50.000 15.36 15.36 38.25 3.41
166 168 5.707066 ACAGAATAGCTTGGATCCTTCTT 57.293 39.130 14.23 0.00 0.00 2.52
193 195 4.565022 AGAACACTGCTAAGAAGAGAAGC 58.435 43.478 0.00 0.00 36.77 3.86
223 225 7.039644 TGGTACTTCAAGAGTTCTAAGAAGAGG 60.040 40.741 21.33 6.13 39.00 3.69
229 231 4.929479 AGAGTTCTAAGAAGAGGAGCAGA 58.071 43.478 0.00 0.00 31.96 4.26
246 248 5.234466 AGCAGATGGTACTTCAAGAGTTT 57.766 39.130 0.00 0.00 39.86 2.66
263 265 7.933577 TCAAGAGTTTTAAGAAGAGATGCAGAA 59.066 33.333 0.00 0.00 0.00 3.02
270 305 5.489792 AAGAAGAGATGCAGAAGGTACAA 57.510 39.130 0.00 0.00 0.00 2.41
323 358 2.096119 CGGTTTTAACACAAGGCTACCG 60.096 50.000 5.43 5.43 40.87 4.02
343 378 7.382218 GCTACCGTTTTACTAGACACTTGTTAA 59.618 37.037 0.00 0.00 0.00 2.01
388 423 9.367444 CCACAGAAACAGGTATACTACTTTTAG 57.633 37.037 2.25 0.00 0.00 1.85
457 495 7.381139 AGAAAGGCAAATACACAAAAACATACG 59.619 33.333 0.00 0.00 0.00 3.06
474 512 9.751542 AAAACATACGGACAAAATTACAAATCA 57.248 25.926 0.00 0.00 0.00 2.57
475 513 9.921637 AAACATACGGACAAAATTACAAATCAT 57.078 25.926 0.00 0.00 0.00 2.45
490 528 9.822185 ATTACAAATCATATATAGCGCAGATCA 57.178 29.630 11.47 0.00 0.00 2.92
506 544 1.315257 ATCAACGGCCCACAATCTGC 61.315 55.000 0.00 0.00 0.00 4.26
545 584 2.229792 CCACAAATCCCATCCCATACG 58.770 52.381 0.00 0.00 0.00 3.06
561 600 4.572389 CCCATACGATGAGACTTTCCTTTG 59.428 45.833 0.00 0.00 0.00 2.77
595 808 2.086869 CGTTTCCAGCACATCATCCTT 58.913 47.619 0.00 0.00 0.00 3.36
646 859 0.702902 ATGCCCCCATCATGATCTCC 59.297 55.000 4.86 0.00 0.00 3.71
656 869 4.519350 CCATCATGATCTCCAAGAACCATG 59.481 45.833 4.86 12.60 0.00 3.66
676 891 0.239347 CCTGCTTCGGCTGAAACAAG 59.761 55.000 12.25 3.06 41.50 3.16
721 961 6.170506 ACTGTAGAAGTTGTTCTTGTCAACA 58.829 36.000 10.59 0.00 44.97 3.33
747 987 7.017254 AGAGGGAGTAGGATTTAACAAAGACAA 59.983 37.037 0.00 0.00 0.00 3.18
768 1008 4.500499 AGCTGGAAGAATATGTTGCTCT 57.500 40.909 0.00 0.00 34.07 4.09
939 1211 4.082190 CCTCTTTATCACCACTCTCAACGA 60.082 45.833 0.00 0.00 0.00 3.85
1308 1631 3.322466 CCCGTGAGCCCCTTGTCT 61.322 66.667 0.00 0.00 0.00 3.41
1357 2599 3.074412 CACTAATCCTGTGTGTGTTCCC 58.926 50.000 0.00 0.00 0.00 3.97
1390 2632 1.204312 GCAAGCGTTCTGTTCGTCC 59.796 57.895 0.00 0.00 0.00 4.79
1454 2696 0.389391 AGTGTCAGACGGTGTTCCTG 59.611 55.000 0.00 0.00 0.00 3.86
1510 2757 5.424121 GGAGACCGAATCATAATGTTTGG 57.576 43.478 0.00 0.00 35.41 3.28
1513 2760 6.436843 AGACCGAATCATAATGTTTGGTTC 57.563 37.500 6.37 0.00 41.18 3.62
1514 2761 5.357032 AGACCGAATCATAATGTTTGGTTCC 59.643 40.000 6.37 0.00 41.18 3.62
1515 2762 4.095782 ACCGAATCATAATGTTTGGTTCCG 59.904 41.667 0.00 0.00 38.65 4.30
1516 2763 4.334203 CCGAATCATAATGTTTGGTTCCGA 59.666 41.667 0.00 0.00 31.80 4.55
1517 2764 5.501715 CGAATCATAATGTTTGGTTCCGAG 58.498 41.667 0.00 0.00 31.80 4.63
1518 2765 5.064707 CGAATCATAATGTTTGGTTCCGAGT 59.935 40.000 0.00 0.00 31.80 4.18
1522 2792 3.619233 AATGTTTGGTTCCGAGTTTCG 57.381 42.857 0.00 0.00 40.07 3.46
1671 2996 2.191128 ACAGTCTTCCTGCAATGGAC 57.809 50.000 0.00 0.00 45.68 4.02
1759 3085 5.199024 TGCATATGTATTTGTTCATGGCC 57.801 39.130 4.29 0.00 0.00 5.36
1773 3099 4.314522 TCATGGCCCTTCAGTTATTTCA 57.685 40.909 0.00 0.00 0.00 2.69
1778 3104 3.195396 GGCCCTTCAGTTATTTCATTGCA 59.805 43.478 0.00 0.00 0.00 4.08
1832 3347 9.543018 GTAAAAATATACTGTCAGTTGCTGAAC 57.457 33.333 11.54 0.00 42.46 3.18
1854 3369 8.010697 TGAACCTAGTTATCCAAGATATCTGGA 58.989 37.037 19.71 19.71 36.04 3.86
1913 3439 2.234143 GCCCAAGAAGTTTGAGAGCTT 58.766 47.619 0.00 0.00 0.00 3.74
2120 3682 8.451748 GTGAGTAACTCTTTCTTTTTGAGTTGT 58.548 33.333 15.19 5.15 46.47 3.32
2178 3755 5.278808 GCGATATATATCACGCCTAATGGGA 60.279 44.000 20.18 0.00 44.27 4.37
2179 3756 6.382608 CGATATATATCACGCCTAATGGGAG 58.617 44.000 20.18 0.00 40.87 4.30
2755 4501 9.574458 CTACTTCATTATATTCTGGTATCACCG 57.426 37.037 0.00 0.00 42.58 4.94
3069 4834 3.511146 GGAATTGAGCTGACCAATTTCCA 59.489 43.478 11.82 0.00 42.35 3.53
3189 4958 0.185175 GGAACCAGACCAACTTGGGT 59.815 55.000 12.62 0.00 43.37 4.51
3200 4969 3.573967 ACCAACTTGGGTGCAGATTTTAG 59.426 43.478 12.62 0.00 43.37 1.85
3774 5654 2.026641 CCCTTGGAATGTGTATGCCAG 58.973 52.381 0.00 0.00 43.11 4.85
3870 5750 8.415950 TTCATCCTTATAAAAGCAAAACCAGA 57.584 30.769 0.00 0.00 0.00 3.86
3876 5756 9.143631 CCTTATAAAAGCAAAACCAGAAGAATG 57.856 33.333 0.00 0.00 0.00 2.67
4230 6117 5.162000 CACCTTTTGTGTCTGACTTTCTC 57.838 43.478 9.51 0.00 40.26 2.87
4302 6189 2.225491 TGTAAATGCAAGCCAGTTCGTC 59.775 45.455 0.00 0.00 33.24 4.20
4381 6268 4.095632 CGTCTTCTGATAGTGAAGCTGAGA 59.904 45.833 0.00 0.00 40.31 3.27
4405 6292 2.012673 CTGAAAGGCCTGAAGAATCCG 58.987 52.381 5.69 0.00 0.00 4.18
4422 6309 5.839063 AGAATCCGTGGATAACTCTATTGGA 59.161 40.000 0.96 0.00 33.97 3.53
4474 6361 4.921470 TCGATAGCTTTTGGAGAAAACG 57.079 40.909 0.00 0.00 0.00 3.60
4496 6383 1.280421 AGATTCCCAGAGTGAACCTGC 59.720 52.381 0.00 0.00 0.00 4.85
4518 6405 1.535462 GACACTGCTGCCGTTGTTAAT 59.465 47.619 0.00 0.00 0.00 1.40
4527 6414 2.285977 GCCGTTGTTAATAGTGAGGGG 58.714 52.381 0.00 0.00 0.00 4.79
4530 6417 4.581868 CCGTTGTTAATAGTGAGGGGAAA 58.418 43.478 0.00 0.00 0.00 3.13
4563 6450 6.071108 CCGATATGAAGGAACCTGATGAGTAT 60.071 42.308 0.00 0.00 0.00 2.12
4660 6547 3.196254 GCAATTGGATGGATTTGACCTGT 59.804 43.478 7.72 0.00 0.00 4.00
4674 6561 4.497291 TGACCTGTTAAGTTCACTTGGT 57.503 40.909 2.26 1.14 37.40 3.67
4677 6564 3.875134 ACCTGTTAAGTTCACTTGGTTCG 59.125 43.478 2.26 0.00 37.40 3.95
4702 6589 1.069022 CACGTGAAATGGCTGAACAGG 60.069 52.381 10.90 0.00 0.00 4.00
4763 6650 1.200716 CAGTGATGGCAGCGAAACAAT 59.799 47.619 0.00 0.00 0.00 2.71
4796 6689 5.640783 TCAGTGTTGACAATGAAGATAGCAG 59.359 40.000 11.36 0.00 46.21 4.24
4799 6692 6.883217 AGTGTTGACAATGAAGATAGCAGAAT 59.117 34.615 0.00 0.00 0.00 2.40
4834 6727 0.185901 AGTGCAGGCTTCCTTTCCAA 59.814 50.000 0.00 0.00 0.00 3.53
4836 6729 1.620323 GTGCAGGCTTCCTTTCCAAAT 59.380 47.619 0.00 0.00 0.00 2.32
4846 6739 9.045745 AGGCTTCCTTTCCAAATATTAATGAAA 57.954 29.630 0.00 0.00 0.00 2.69
4893 6786 7.719871 AACAGAGAATGTACTAGGAGCTTTA 57.280 36.000 0.00 0.00 43.00 1.85
4929 6822 4.978099 AGAACTTCTCATCTCAAGGCAAA 58.022 39.130 0.00 0.00 0.00 3.68
4939 6832 6.475504 TCATCTCAAGGCAAAGATTCAGTAA 58.524 36.000 0.00 0.00 29.77 2.24
4940 6833 6.372659 TCATCTCAAGGCAAAGATTCAGTAAC 59.627 38.462 0.00 0.00 29.77 2.50
4941 6834 4.690748 TCTCAAGGCAAAGATTCAGTAACG 59.309 41.667 0.00 0.00 0.00 3.18
4942 6835 4.637276 TCAAGGCAAAGATTCAGTAACGA 58.363 39.130 0.00 0.00 0.00 3.85
4943 6836 5.245531 TCAAGGCAAAGATTCAGTAACGAT 58.754 37.500 0.00 0.00 0.00 3.73
4944 6837 5.351465 TCAAGGCAAAGATTCAGTAACGATC 59.649 40.000 0.00 0.00 0.00 3.69
4945 6838 4.832248 AGGCAAAGATTCAGTAACGATCA 58.168 39.130 0.00 0.00 0.00 2.92
4974 6867 9.428097 GAAGCAAACCAGAAAGATAATTCAAAT 57.572 29.630 0.00 0.00 0.00 2.32
4976 6869 7.820872 AGCAAACCAGAAAGATAATTCAAATGG 59.179 33.333 0.00 0.00 31.73 3.16
4988 6881 9.745018 AGATAATTCAAATGGAGAAGAACAAGA 57.255 29.630 0.00 0.00 0.00 3.02
5008 6901 5.032327 AGATGCTGCAGATTCTGTTGATA 57.968 39.130 20.43 0.00 33.43 2.15
5026 6919 2.584835 TAAGGATGGTGCTGCTGTTT 57.415 45.000 0.00 0.00 0.00 2.83
5029 6922 0.961019 GGATGGTGCTGCTGTTTCAA 59.039 50.000 0.00 0.00 0.00 2.69
5034 6927 0.455410 GTGCTGCTGTTTCAACCACA 59.545 50.000 0.00 0.00 0.00 4.17
5221 7114 2.288640 ACACAGGTGAGTAACGTTAGCC 60.289 50.000 8.60 8.86 0.00 3.93
5275 7168 3.118992 TGCCTTTGTGTTGTGTTGCATAA 60.119 39.130 0.00 0.00 0.00 1.90
5287 7180 6.208988 TGTGTTGCATAAGTTAACAAACCA 57.791 33.333 8.61 0.00 36.23 3.67
5288 7181 6.631016 TGTGTTGCATAAGTTAACAAACCAA 58.369 32.000 8.61 1.98 36.23 3.67
5387 7280 4.789012 AATAACATGAAGCACCCACTTG 57.211 40.909 0.00 0.00 0.00 3.16
5496 7389 6.235664 GTGGAAGGATTTGGTAACTGACTTA 58.764 40.000 0.00 0.00 37.61 2.24
5534 7427 5.931294 TGGGTAAGAGTTAACACATCACAA 58.069 37.500 8.61 0.00 0.00 3.33
5560 7456 1.207791 CCCCTCCATTAGTGTCTGCT 58.792 55.000 0.00 0.00 0.00 4.24
5664 7721 1.903183 GCAGACTAAACCCTGAGAGGT 59.097 52.381 0.00 0.00 44.00 3.85
5802 7859 1.061131 CACAGTGGATTCTTAAGCGCG 59.939 52.381 0.00 0.00 0.00 6.86
5862 7919 2.270923 CACGCCATCGGATATATGTGG 58.729 52.381 0.00 0.00 40.69 4.17
6115 8250 8.594881 ATTAGTTCTCGCTAACCTTATTCATG 57.405 34.615 0.00 0.00 34.25 3.07
6303 8438 8.746052 TCCATAACCTTGTTGTTTCATATAGG 57.254 34.615 0.00 0.00 0.00 2.57
6333 8468 2.573463 ACCATCCAGTCCAGGGTTTAT 58.427 47.619 0.00 0.00 0.00 1.40
6337 8472 2.626785 TCCAGTCCAGGGTTTATGTGA 58.373 47.619 0.00 0.00 0.00 3.58
6345 8480 5.535030 GTCCAGGGTTTATGTGAAAAGAAGT 59.465 40.000 0.00 0.00 0.00 3.01
6346 8481 5.534654 TCCAGGGTTTATGTGAAAAGAAGTG 59.465 40.000 0.00 0.00 0.00 3.16
6367 8502 6.291377 AGTGTCAGTCAAACATCTAACACAT 58.709 36.000 0.00 0.00 38.51 3.21
6372 8507 7.332926 GTCAGTCAAACATCTAACACATGAGAT 59.667 37.037 0.00 0.00 32.48 2.75
6442 8577 6.347483 CGAAGTTTTAACTGTCCTTTCCTAGC 60.347 42.308 0.00 0.00 39.66 3.42
6498 8640 4.154737 TCGTCAGGATGCTCTTTCATTTTG 59.845 41.667 0.00 0.00 34.76 2.44
6522 8664 8.276060 TGTTTTAAGTTTTGCTAAATGCGTAG 57.724 30.769 0.00 0.00 46.63 3.51
6537 8679 9.586150 CTAAATGCGTAGTGCTTAATAGAATTG 57.414 33.333 0.00 0.00 46.63 2.32
6538 8680 7.786178 AATGCGTAGTGCTTAATAGAATTGA 57.214 32.000 0.00 0.00 46.63 2.57
6539 8681 6.583912 TGCGTAGTGCTTAATAGAATTGAC 57.416 37.500 0.00 0.00 46.63 3.18
6540 8682 6.103330 TGCGTAGTGCTTAATAGAATTGACA 58.897 36.000 0.00 0.00 46.63 3.58
6541 8683 6.255670 TGCGTAGTGCTTAATAGAATTGACAG 59.744 38.462 0.00 0.00 46.63 3.51
6542 8684 6.255887 GCGTAGTGCTTAATAGAATTGACAGT 59.744 38.462 0.00 0.00 41.73 3.55
6543 8685 7.515371 GCGTAGTGCTTAATAGAATTGACAGTC 60.515 40.741 0.00 0.00 41.73 3.51
6544 8686 7.488150 CGTAGTGCTTAATAGAATTGACAGTCA 59.512 37.037 0.00 0.00 0.00 3.41
6545 8687 7.602517 AGTGCTTAATAGAATTGACAGTCAC 57.397 36.000 1.52 0.00 0.00 3.67
6564 8706 2.677836 CACACAGTGCACAACTAACACT 59.322 45.455 21.04 0.00 45.25 3.55
6587 8730 4.630111 TGGCTCCAACTTATTTTTGCTTG 58.370 39.130 0.00 0.00 0.00 4.01
6650 8793 3.802948 ATGCTAGTTACCTCTTGTCCG 57.197 47.619 0.00 0.00 0.00 4.79
6658 8801 0.250338 ACCTCTTGTCCGGCAGTTTC 60.250 55.000 0.00 0.00 0.00 2.78
6732 8875 6.235231 AGGAATGGTGTTATATTCGTGACT 57.765 37.500 0.00 0.00 34.83 3.41
6759 8902 4.837972 ACAATTTTGGCTCTCCTAGAGTC 58.162 43.478 1.56 1.56 46.75 3.36
6806 8949 6.741358 GTCTACAATGCGGTAACTGAATTTTC 59.259 38.462 0.00 0.00 0.00 2.29
6807 8950 5.446143 ACAATGCGGTAACTGAATTTTCA 57.554 34.783 0.00 0.00 35.57 2.69
6808 8951 5.837437 ACAATGCGGTAACTGAATTTTCAA 58.163 33.333 0.00 0.00 36.64 2.69
6809 8952 5.689961 ACAATGCGGTAACTGAATTTTCAAC 59.310 36.000 0.00 0.00 36.64 3.18
6810 8953 4.902443 TGCGGTAACTGAATTTTCAACA 57.098 36.364 0.00 0.00 36.64 3.33
6811 8954 4.602995 TGCGGTAACTGAATTTTCAACAC 58.397 39.130 0.00 0.00 36.64 3.32
6812 8955 4.096532 TGCGGTAACTGAATTTTCAACACA 59.903 37.500 0.00 0.00 36.64 3.72
6813 8956 4.439776 GCGGTAACTGAATTTTCAACACAC 59.560 41.667 0.00 0.00 36.64 3.82
6814 8957 5.574082 CGGTAACTGAATTTTCAACACACA 58.426 37.500 0.00 0.00 36.64 3.72
6815 8958 6.030849 CGGTAACTGAATTTTCAACACACAA 58.969 36.000 0.00 0.00 36.64 3.33
6816 8959 6.196353 CGGTAACTGAATTTTCAACACACAAG 59.804 38.462 0.00 0.00 36.64 3.16
6817 8960 7.254852 GGTAACTGAATTTTCAACACACAAGA 58.745 34.615 0.00 0.00 36.64 3.02
6818 8961 7.757624 GGTAACTGAATTTTCAACACACAAGAA 59.242 33.333 0.00 0.00 36.64 2.52
6819 8962 7.581011 AACTGAATTTTCAACACACAAGAAC 57.419 32.000 0.00 0.00 36.64 3.01
6820 8963 6.924111 ACTGAATTTTCAACACACAAGAACT 58.076 32.000 0.00 0.00 36.64 3.01
6821 8964 7.029563 ACTGAATTTTCAACACACAAGAACTC 58.970 34.615 0.00 0.00 36.64 3.01
6822 8965 7.094205 ACTGAATTTTCAACACACAAGAACTCT 60.094 33.333 0.00 0.00 36.64 3.24
6823 8966 7.250569 TGAATTTTCAACACACAAGAACTCTC 58.749 34.615 0.00 0.00 33.55 3.20
6824 8967 6.757897 ATTTTCAACACACAAGAACTCTCA 57.242 33.333 0.00 0.00 0.00 3.27
6841 8984 9.474313 AGAACTCTCAAACTCTATTCATAGACT 57.526 33.333 0.00 0.00 35.64 3.24
6876 9019 6.715347 AGAAACAGGCTAAAATTCAACTGT 57.285 33.333 0.00 0.00 40.55 3.55
6958 9130 6.313658 ACAGCCTGTTTTTGAATTTGAACTTC 59.686 34.615 0.00 0.00 0.00 3.01
7037 9210 0.107643 TCATTCCAACAGTGCCACGA 59.892 50.000 0.00 0.00 0.00 4.35
7101 9274 5.563876 ATGTGGAGATCTAACAGATGCAT 57.436 39.130 14.24 0.00 34.53 3.96
7110 9283 8.579850 AGATCTAACAGATGCATTGGTAAAAA 57.420 30.769 0.00 0.00 34.53 1.94
7152 9326 7.510549 TTAGTTCCAATCCTCTTTTGTTCTG 57.489 36.000 0.00 0.00 0.00 3.02
7184 9358 7.360575 AGTCGGTTAAGTATTGTCAACATTC 57.639 36.000 0.00 0.00 0.00 2.67
7237 9411 3.987868 TCACACGAACTTAGAACTGCATC 59.012 43.478 0.00 0.00 0.00 3.91
7303 9477 3.566322 GTGATGAGATAGGCGAGTACACT 59.434 47.826 0.00 0.00 0.00 3.55
7337 9513 6.853362 GCTTGTTAGTGAATTTGTGAGTCTTC 59.147 38.462 0.00 0.00 0.00 2.87
7345 9521 6.147000 GTGAATTTGTGAGTCTTCTTCTCCTC 59.853 42.308 0.00 0.00 0.00 3.71
7374 9550 2.419673 TGACATTGCTTGCAGATTACCG 59.580 45.455 0.00 0.00 0.00 4.02
7421 9597 6.480763 TGTATAGGAAATGCCACAAGAAGAA 58.519 36.000 0.00 0.00 40.02 2.52
7486 9878 9.784531 TTATTTTAAGCATGAAACATTGGGAAA 57.215 25.926 0.00 0.00 0.00 3.13
7551 9943 5.897377 ATTGTATTTGACTAGTTGGGCAC 57.103 39.130 0.00 0.00 0.00 5.01
7582 9974 3.876274 TTCCAGATGAAAGGAGAGACG 57.124 47.619 0.00 0.00 34.91 4.18
7706 10098 4.328440 CACTTCTAGAGGTTTCTTGCATCG 59.672 45.833 4.47 0.00 34.79 3.84
7864 10339 3.008835 TGATGCAAGCCAAGAATAGCT 57.991 42.857 0.00 0.00 42.40 3.32
7880 10355 1.981256 AGCTCCAAATTGACCGTGTT 58.019 45.000 0.00 0.00 0.00 3.32
7881 10356 3.134574 AGCTCCAAATTGACCGTGTTA 57.865 42.857 0.00 0.00 0.00 2.41
7917 10395 2.044793 TGGAACTTCCCAGACCTGAT 57.955 50.000 5.30 0.00 35.03 2.90
7924 10402 1.191489 TCCCAGACCTGATTCGCACA 61.191 55.000 0.00 0.00 0.00 4.57
8066 10580 4.078639 TCATTTTCCCCGCAACAAAAAT 57.921 36.364 0.00 0.00 32.93 1.82
8100 10614 3.620374 CACTATGTTGTCTGATCCTGCAC 59.380 47.826 0.00 0.00 0.00 4.57
8104 10618 2.158769 TGTTGTCTGATCCTGCACTTGT 60.159 45.455 0.00 0.00 0.00 3.16
8141 10655 0.158928 GTGTTCAGCTTCGTTCGACG 59.841 55.000 0.00 0.00 44.19 5.12
8143 10657 2.019951 TTCAGCTTCGTTCGACGGC 61.020 57.895 0.00 9.90 42.81 5.68
8149 10663 1.625616 CTTCGTTCGACGGCTATGTT 58.374 50.000 0.00 0.00 42.81 2.71
8152 10666 3.425577 TCGTTCGACGGCTATGTTTAT 57.574 42.857 0.00 0.00 42.81 1.40
8153 10667 3.772932 TCGTTCGACGGCTATGTTTATT 58.227 40.909 0.00 0.00 42.81 1.40
8154 10668 4.175516 TCGTTCGACGGCTATGTTTATTT 58.824 39.130 0.00 0.00 42.81 1.40
8161 10675 6.908284 TCGACGGCTATGTTTATTTTTAATGC 59.092 34.615 0.00 0.00 0.00 3.56
8180 10694 0.314935 CAGCATTCGCAACCAAAGGT 59.685 50.000 0.00 0.00 42.27 3.50
8213 10727 2.496899 AGACAAAATCTGGTCGGCAT 57.503 45.000 0.00 0.00 39.01 4.40
8232 10746 3.305608 GCATATTGTTGCCTGCCTAATCC 60.306 47.826 0.00 0.00 36.60 3.01
8273 10788 2.167662 GGTGAGTGTAACCAATTGGGG 58.832 52.381 27.89 4.74 42.91 4.96
8274 10789 2.224917 GGTGAGTGTAACCAATTGGGGA 60.225 50.000 27.89 12.69 42.91 4.81
8275 10790 3.563479 GGTGAGTGTAACCAATTGGGGAT 60.563 47.826 27.89 15.81 42.91 3.85
8284 10799 1.064166 CCAATTGGGGATGTCTGCTCT 60.064 52.381 17.36 0.00 0.00 4.09
8294 10809 0.319040 TGTCTGCTCTGAAGACGTGC 60.319 55.000 0.00 0.00 45.81 5.34
8311 10826 2.529151 GTGCATTCGCCATTTACAAGG 58.471 47.619 0.00 0.00 37.32 3.61
8347 10862 2.841442 AACAAAGCCTCGACTAAGCT 57.159 45.000 0.00 0.00 38.88 3.74
8377 10892 5.421693 GCTATCAGATGGATCTGGTCTACAT 59.578 44.000 15.15 4.66 44.64 2.29
8382 10897 9.726652 ATCAGATGGATCTGGTCTACATATTAT 57.273 33.333 15.15 0.00 44.64 1.28
8409 10924 3.385755 GTGAATATGCTTGGCCAATCCTT 59.614 43.478 20.85 13.33 35.26 3.36
8446 10961 2.038164 TCTCAGCTGTGATTTGTCTGCT 59.962 45.455 14.67 0.00 38.89 4.24
8447 10962 2.415857 CTCAGCTGTGATTTGTCTGCTC 59.584 50.000 14.67 0.00 36.89 4.26
8486 11001 5.955961 AGCCATGTAAATAATGCCCTTTT 57.044 34.783 0.00 0.00 0.00 2.27
8509 11024 3.675228 GCTCCCAAGTGCTTTGAATCATG 60.675 47.826 3.51 0.00 39.21 3.07
8519 11034 7.759465 AGTGCTTTGAATCATGACAATAGAAG 58.241 34.615 0.00 0.00 0.00 2.85
8526 11041 8.339344 TGAATCATGACAATAGAAGCTCAAAA 57.661 30.769 0.00 0.00 0.00 2.44
8546 11061 0.911045 TTCTCGGTTAAGGGACCCCC 60.911 60.000 7.00 0.00 45.90 5.40
8556 11071 2.850016 GGGACCCCCGATGTATCTT 58.150 57.895 0.00 0.00 32.13 2.40
8557 11072 1.137697 GGGACCCCCGATGTATCTTT 58.862 55.000 0.00 0.00 32.13 2.52
8566 11081 5.290386 CCCCGATGTATCTTTCAGAAGTAC 58.710 45.833 0.00 0.00 34.41 2.73
8567 11082 5.069251 CCCCGATGTATCTTTCAGAAGTACT 59.931 44.000 0.00 0.00 34.41 2.73
8568 11083 6.210078 CCCGATGTATCTTTCAGAAGTACTC 58.790 44.000 0.00 0.00 34.41 2.59
8569 11084 6.210078 CCGATGTATCTTTCAGAAGTACTCC 58.790 44.000 0.00 0.00 34.41 3.85
8570 11085 6.210078 CGATGTATCTTTCAGAAGTACTCCC 58.790 44.000 0.00 0.00 34.41 4.30
8571 11086 6.039941 CGATGTATCTTTCAGAAGTACTCCCT 59.960 42.308 0.00 0.00 34.41 4.20
8572 11087 6.777213 TGTATCTTTCAGAAGTACTCCCTC 57.223 41.667 0.00 0.00 34.41 4.30
8573 11088 5.657302 TGTATCTTTCAGAAGTACTCCCTCC 59.343 44.000 0.00 0.00 34.41 4.30
8574 11089 3.090037 TCTTTCAGAAGTACTCCCTCCG 58.910 50.000 0.00 0.00 34.41 4.63
8575 11090 2.599408 TTCAGAAGTACTCCCTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
8576 11091 2.599408 TCAGAAGTACTCCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
8577 11092 2.444421 TCAGAAGTACTCCCTCCGTTC 58.556 52.381 0.00 0.00 0.00 3.95
8578 11093 1.132643 CAGAAGTACTCCCTCCGTTCG 59.867 57.143 0.00 0.00 0.00 3.95
8579 11094 0.455005 GAAGTACTCCCTCCGTTCGG 59.545 60.000 4.74 4.74 0.00 4.30
8580 11095 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
8581 11096 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
8582 11097 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
8583 11098 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
8584 11099 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
8585 11100 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
8586 11101 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
8587 11102 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
8588 11103 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
8589 11104 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
8590 11105 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
8591 11106 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
8592 11107 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
8593 11108 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
8594 11109 2.597305 CGTTCGGAATTACTCGTCCAAG 59.403 50.000 0.00 0.00 33.10 3.61
8595 11110 3.671433 CGTTCGGAATTACTCGTCCAAGA 60.671 47.826 0.00 0.00 33.10 3.02
8596 11111 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
8597 11112 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
8598 11113 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
8599 11114 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
8662 11177 4.735662 TTTGACAAGTAATTCCGAACGG 57.264 40.909 6.94 6.94 0.00 4.44
8663 11178 3.663995 TGACAAGTAATTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
8664 11179 3.581755 TGACAAGTAATTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
8665 11180 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
8666 11181 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
8670 11185 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
8684 11199 5.753921 CGGAGGGAGTAGTTATGATGAAAAC 59.246 44.000 0.00 0.00 0.00 2.43
8720 11235 6.068010 CAGACCTCTAGTATCCTGACTGAAT 58.932 44.000 0.00 0.00 0.00 2.57
8721 11236 6.549364 CAGACCTCTAGTATCCTGACTGAATT 59.451 42.308 0.00 0.00 0.00 2.17
8746 11261 7.638444 TGTTTATCTTGGATATGAAGTTGGGA 58.362 34.615 0.00 0.00 0.00 4.37
8762 11277 7.285172 TGAAGTTGGGATACAAATATGGATGTG 59.715 37.037 0.00 0.00 41.58 3.21
8763 11278 5.536161 AGTTGGGATACAAATATGGATGTGC 59.464 40.000 0.00 0.00 41.58 4.57
8795 11310 6.926313 ACTAACTTCAGAGTATCCAGAACAC 58.074 40.000 0.00 0.00 34.21 3.32
8815 11330 4.218635 ACACGAGCAAGAGAAGAATACTGA 59.781 41.667 0.00 0.00 0.00 3.41
8824 11339 9.973450 GCAAGAGAAGAATACTGATAAGATACA 57.027 33.333 0.00 0.00 0.00 2.29
8827 11342 9.084533 AGAGAAGAATACTGATAAGATACACCC 57.915 37.037 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.747538 ATAGATAATAAAGGAAACCACCACAC 57.252 34.615 0.00 0.00 0.00 3.82
60 62 5.061179 GCTTTCACCCCGCTTTATAGATAA 58.939 41.667 0.00 0.00 0.00 1.75
61 63 4.504340 GGCTTTCACCCCGCTTTATAGATA 60.504 45.833 0.00 0.00 0.00 1.98
62 64 3.477530 GCTTTCACCCCGCTTTATAGAT 58.522 45.455 0.00 0.00 0.00 1.98
103 105 5.921976 ACGACAACGACAGAATAACAATACA 59.078 36.000 0.00 0.00 42.66 2.29
107 109 4.613944 AGACGACAACGACAGAATAACAA 58.386 39.130 0.00 0.00 42.66 2.83
112 114 2.552743 TCAGAGACGACAACGACAGAAT 59.447 45.455 0.00 0.00 42.66 2.40
141 143 4.851639 AGGATCCAAGCTATTCTGTTGT 57.148 40.909 15.82 0.00 0.00 3.32
166 168 6.004574 TCTCTTCTTAGCAGTGTTCTAGACA 58.995 40.000 0.00 0.00 35.42 3.41
193 195 7.831753 TCTTAGAACTCTTGAAGTACCATCTG 58.168 38.462 0.00 0.00 37.17 2.90
223 225 4.464069 ACTCTTGAAGTACCATCTGCTC 57.536 45.455 0.00 0.00 36.07 4.26
229 231 9.495572 CTCTTCTTAAAACTCTTGAAGTACCAT 57.504 33.333 0.00 0.00 37.17 3.55
246 248 6.605471 TGTACCTTCTGCATCTCTTCTTAA 57.395 37.500 0.00 0.00 0.00 1.85
263 265 5.014858 TCTCCGTCTATTCTTGTTGTACCT 58.985 41.667 0.00 0.00 0.00 3.08
270 305 5.477291 TGTTCTTCTCTCCGTCTATTCTTGT 59.523 40.000 0.00 0.00 0.00 3.16
388 423 8.667987 TCTGTATTCGCATTGTAAATTGAAAC 57.332 30.769 0.00 0.00 0.00 2.78
400 435 7.591165 AGTACGTACATATCTGTATTCGCATT 58.409 34.615 26.55 0.00 39.93 3.56
435 473 5.241949 TCCGTATGTTTTTGTGTATTTGCCT 59.758 36.000 0.00 0.00 0.00 4.75
474 512 3.448686 GCCGTTGATCTGCGCTATATAT 58.551 45.455 9.73 0.00 0.00 0.86
475 513 2.416836 GGCCGTTGATCTGCGCTATATA 60.417 50.000 9.73 0.00 0.00 0.86
476 514 1.673033 GGCCGTTGATCTGCGCTATAT 60.673 52.381 9.73 0.00 0.00 0.86
477 515 0.319555 GGCCGTTGATCTGCGCTATA 60.320 55.000 9.73 0.00 0.00 1.31
490 528 3.055719 CGCAGATTGTGGGCCGTT 61.056 61.111 0.00 0.00 31.39 4.44
545 584 4.579869 TGGCTACAAAGGAAAGTCTCATC 58.420 43.478 0.00 0.00 0.00 2.92
561 600 4.058817 CTGGAAACGGAGATATTGGCTAC 58.941 47.826 0.00 0.00 39.98 3.58
595 808 4.979943 TCATGTCAGCACTTGTTTTTCA 57.020 36.364 0.00 0.00 0.00 2.69
676 891 5.291128 CAGTATTTGTGAACGGATGGAGTAC 59.709 44.000 0.00 0.00 0.00 2.73
721 961 6.500751 TGTCTTTGTTAAATCCTACTCCCTCT 59.499 38.462 0.00 0.00 0.00 3.69
747 987 4.500499 AGAGCAACATATTCTTCCAGCT 57.500 40.909 0.00 0.00 0.00 4.24
768 1008 1.269448 GCACGATTCTCCTGGCAAAAA 59.731 47.619 0.00 0.00 0.00 1.94
889 1129 4.961511 AAGCGCGCCACGTCTTCA 62.962 61.111 30.33 0.00 46.11 3.02
891 1131 3.236618 GAAAAGCGCGCCACGTCTT 62.237 57.895 30.33 11.89 46.11 3.01
1275 1598 4.426313 GGTGGGGTGCTGTAGGCC 62.426 72.222 0.00 0.00 40.92 5.19
1308 1631 1.585592 AGGATGATGGGTAGAAGGGGA 59.414 52.381 0.00 0.00 0.00 4.81
1357 2599 2.937379 CTTGCCTCCATCAGCTCCCG 62.937 65.000 0.00 0.00 0.00 5.14
1390 2632 1.214589 GCATCTGCCTGCCAAACAG 59.785 57.895 0.00 0.00 46.77 3.16
1454 2696 1.012486 CGGCCACAACTTACTCGGAC 61.012 60.000 2.24 0.00 0.00 4.79
1500 2742 5.291293 CGAAACTCGGAACCAAACATTAT 57.709 39.130 0.00 0.00 36.00 1.28
1514 2761 1.403780 CCCTAGTTGGTCCGAAACTCG 60.404 57.143 0.00 0.00 38.73 4.18
1515 2762 1.675116 GCCCTAGTTGGTCCGAAACTC 60.675 57.143 0.00 0.00 38.73 3.01
1516 2763 0.323957 GCCCTAGTTGGTCCGAAACT 59.676 55.000 0.64 0.64 40.82 2.66
1517 2764 0.035739 TGCCCTAGTTGGTCCGAAAC 59.964 55.000 0.00 0.00 0.00 2.78
1518 2765 0.766131 TTGCCCTAGTTGGTCCGAAA 59.234 50.000 0.00 0.00 0.00 3.46
1522 2792 0.323360 TGCATTGCCCTAGTTGGTCC 60.323 55.000 6.12 0.00 0.00 4.46
1733 3059 6.452242 CCATGAACAAATACATATGCAGCAT 58.548 36.000 13.73 13.73 0.00 3.79
1734 3060 5.736777 GCCATGAACAAATACATATGCAGCA 60.737 40.000 1.58 0.00 0.00 4.41
1735 3061 4.682860 GCCATGAACAAATACATATGCAGC 59.317 41.667 1.58 0.00 0.00 5.25
1737 3063 4.039004 GGGCCATGAACAAATACATATGCA 59.961 41.667 4.39 0.00 0.00 3.96
1738 3064 4.281688 AGGGCCATGAACAAATACATATGC 59.718 41.667 6.18 0.00 0.00 3.14
1739 3065 6.040729 TGAAGGGCCATGAACAAATACATATG 59.959 38.462 6.18 0.00 0.00 1.78
1742 3068 4.352009 TGAAGGGCCATGAACAAATACAT 58.648 39.130 6.18 0.00 0.00 2.29
1744 3070 3.763897 ACTGAAGGGCCATGAACAAATAC 59.236 43.478 6.18 0.00 0.00 1.89
1759 3085 6.748333 TCTCTGCAATGAAATAACTGAAGG 57.252 37.500 0.00 0.00 0.00 3.46
1832 3347 8.195165 TGTTCCAGATATCTTGGATAACTAGG 57.805 38.462 18.71 7.96 0.00 3.02
2319 3896 9.137459 CATACCTGGAGTAGATTTTCTAGAGAA 57.863 37.037 0.00 0.00 33.42 2.87
2755 4501 8.707938 AAAAGAAAGGCACAAATATTATCTGC 57.292 30.769 0.00 0.00 0.00 4.26
3069 4834 9.653287 TGTACGTCTCAAATTTCTTCATAGATT 57.347 29.630 0.00 0.00 0.00 2.40
3200 4969 7.703328 TGATTTTTCAACTGAGACAGGTTTAC 58.297 34.615 0.00 0.00 35.51 2.01
3323 5094 1.956170 GTGCAGTCGTCACCACAGG 60.956 63.158 0.00 0.00 0.00 4.00
3389 5160 4.081087 GGTTCCTCTAGGAGTTGCATACAA 60.081 45.833 0.00 0.00 46.36 2.41
3477 5248 1.135689 GCACGGCAAGAAGTTACCATG 60.136 52.381 0.00 0.00 0.00 3.66
3774 5654 3.753797 GGGAAACAAGGATCAGTTCACTC 59.246 47.826 0.00 0.00 0.00 3.51
3854 5734 9.783081 AAATCATTCTTCTGGTTTTGCTTTTAT 57.217 25.926 0.00 0.00 0.00 1.40
3870 5750 5.796424 AGCCAACTGTGAAAATCATTCTT 57.204 34.783 0.00 0.00 0.00 2.52
3876 5756 5.886960 ATGAGTAGCCAACTGTGAAAATC 57.113 39.130 0.00 0.00 39.07 2.17
3931 5811 5.188988 TGCCTATGTACTCCTCGGTATAT 57.811 43.478 0.00 0.00 0.00 0.86
4230 6117 2.102252 AGATCCTAGGCTGCTCTTTTCG 59.898 50.000 2.96 0.00 0.00 3.46
4302 6189 1.276989 AGTTGCCCAAATGCAGATTGG 59.723 47.619 21.53 21.53 45.62 3.16
4381 6268 4.708909 GGATTCTTCAGGCCTTTCAGAAAT 59.291 41.667 17.92 7.96 0.00 2.17
4405 6292 7.901029 TCATCTGATCCAATAGAGTTATCCAC 58.099 38.462 0.00 0.00 0.00 4.02
4422 6309 2.786777 TGCTGTTGCAGTTCATCTGAT 58.213 42.857 0.00 0.00 46.27 2.90
4474 6361 1.280421 AGGTTCACTCTGGGAATCTGC 59.720 52.381 0.00 0.00 34.53 4.26
4496 6383 1.439353 AACAACGGCAGCAGTGTCTG 61.439 55.000 0.00 9.41 37.15 3.51
4518 6405 3.558321 CGGTTGATGTTTTCCCCTCACTA 60.558 47.826 0.00 0.00 0.00 2.74
4527 6414 6.677781 TCCTTCATATCGGTTGATGTTTTC 57.322 37.500 0.00 0.00 35.99 2.29
4530 6417 4.881850 GGTTCCTTCATATCGGTTGATGTT 59.118 41.667 0.00 0.00 35.99 2.71
4563 6450 2.727123 TGGTGAAAGCACTCCAGAAA 57.273 45.000 0.00 0.00 40.88 2.52
4660 6547 6.510478 CGTGATTTCGAACCAAGTGAACTTAA 60.510 38.462 0.00 0.00 34.28 1.85
4674 6561 2.811431 AGCCATTTCACGTGATTTCGAA 59.189 40.909 20.80 10.70 34.70 3.71
4677 6564 3.829886 TCAGCCATTTCACGTGATTTC 57.170 42.857 20.80 7.33 0.00 2.17
4702 6589 6.586844 GTCGCCAGTCCAGATTCTAAATATAC 59.413 42.308 0.00 0.00 0.00 1.47
4804 6697 0.322008 GCCTGCACTGCCTCTTTAGT 60.322 55.000 0.00 0.00 0.00 2.24
4846 6739 6.918067 TTGAGACAATACATCCCGAGATAT 57.082 37.500 0.00 0.00 0.00 1.63
4929 6822 6.108687 TGCTTCATTGATCGTTACTGAATCT 58.891 36.000 0.00 0.00 0.00 2.40
4939 6832 3.411446 TCTGGTTTGCTTCATTGATCGT 58.589 40.909 0.00 0.00 0.00 3.73
4940 6833 4.424061 TTCTGGTTTGCTTCATTGATCG 57.576 40.909 0.00 0.00 0.00 3.69
4941 6834 6.017400 TCTTTCTGGTTTGCTTCATTGATC 57.983 37.500 0.00 0.00 0.00 2.92
4942 6835 6.600882 ATCTTTCTGGTTTGCTTCATTGAT 57.399 33.333 0.00 0.00 0.00 2.57
4943 6836 7.523293 TTATCTTTCTGGTTTGCTTCATTGA 57.477 32.000 0.00 0.00 0.00 2.57
4944 6837 8.767478 AATTATCTTTCTGGTTTGCTTCATTG 57.233 30.769 0.00 0.00 0.00 2.82
4945 6838 8.587608 TGAATTATCTTTCTGGTTTGCTTCATT 58.412 29.630 0.00 0.00 0.00 2.57
4974 6867 2.224597 TGCAGCATCTTGTTCTTCTCCA 60.225 45.455 0.00 0.00 0.00 3.86
4976 6869 3.332919 TCTGCAGCATCTTGTTCTTCTC 58.667 45.455 9.47 0.00 0.00 2.87
4988 6881 4.579340 CCTTATCAACAGAATCTGCAGCAT 59.421 41.667 9.47 0.00 34.37 3.79
5008 6901 1.251251 GAAACAGCAGCACCATCCTT 58.749 50.000 0.00 0.00 0.00 3.36
5034 6927 8.784043 GTTTTCTGTGTATTTATGGACACTTCT 58.216 33.333 6.70 0.00 45.08 2.85
5221 7114 5.048504 AGCAAAACTCACTGATACCACAATG 60.049 40.000 0.00 0.00 0.00 2.82
5378 7271 2.620251 TCAGAGAACACAAGTGGGTG 57.380 50.000 5.08 0.00 44.35 4.61
5428 7321 8.576442 ACAGAAACCAAAGTAAATAAGATGGTG 58.424 33.333 0.00 0.00 40.13 4.17
5459 7352 2.158310 TCCTTCCACCTTGTCTGAGAGA 60.158 50.000 0.00 0.00 0.00 3.10
5496 7389 4.428845 CCAGCAGGGACAAGCATT 57.571 55.556 0.00 0.00 40.01 3.56
5545 7441 6.899393 AATGAAAAAGCAGACACTAATGGA 57.101 33.333 0.00 0.00 0.00 3.41
5546 7442 7.951530 AAAATGAAAAAGCAGACACTAATGG 57.048 32.000 0.00 0.00 0.00 3.16
5615 7672 7.594758 TCAACTTCAAAATATGCTGTGTTAAGC 59.405 33.333 0.00 0.00 43.82 3.09
5664 7721 2.516227 TGTTTGAAGTCACCACCCAA 57.484 45.000 0.00 0.00 0.00 4.12
5802 7859 8.410673 TGATCCTATTCCTAACAGAGTCATAC 57.589 38.462 0.00 0.00 0.00 2.39
5905 8040 4.882842 TCATGTTGGACTAACTGCTACA 57.117 40.909 3.19 0.00 40.05 2.74
5980 8115 7.308770 GCATGATAGCAGCCAACATTTCTATAA 60.309 37.037 0.00 0.00 0.00 0.98
5981 8116 6.149973 GCATGATAGCAGCCAACATTTCTATA 59.850 38.462 0.00 0.00 0.00 1.31
6021 8156 2.095567 CAGCCTGGACAATTGTTTCTCG 60.096 50.000 13.36 1.23 0.00 4.04
6054 8189 4.827692 TGATATACACCGAAAGCACAAGT 58.172 39.130 0.00 0.00 0.00 3.16
6058 8193 4.213482 GGGATTGATATACACCGAAAGCAC 59.787 45.833 0.00 0.00 0.00 4.40
6115 8250 3.204526 CAGTGGAGAAATGAGATGCTCC 58.795 50.000 0.00 0.00 45.59 4.70
6303 8438 4.910195 TGGACTGGATGGTATCATATTGC 58.090 43.478 0.00 0.00 32.98 3.56
6318 8453 3.433306 TTCACATAAACCCTGGACTGG 57.567 47.619 0.00 0.00 0.00 4.00
6333 8468 5.471797 TGTTTGACTGACACTTCTTTTCACA 59.528 36.000 0.00 0.00 0.00 3.58
6337 8472 8.398665 GTTAGATGTTTGACTGACACTTCTTTT 58.601 33.333 0.00 0.00 0.00 2.27
6345 8480 6.287525 TCATGTGTTAGATGTTTGACTGACA 58.712 36.000 0.00 0.00 31.95 3.58
6346 8481 6.646653 TCTCATGTGTTAGATGTTTGACTGAC 59.353 38.462 0.00 0.00 0.00 3.51
6391 8526 9.278734 GTCAAAGCATTTTAACTAAGTATCTGC 57.721 33.333 0.00 0.00 35.03 4.26
6401 8536 9.575783 TTAAAACTTCGTCAAAGCATTTTAACT 57.424 25.926 0.00 0.00 35.03 2.24
6403 8538 9.575783 AGTTAAAACTTCGTCAAAGCATTTTAA 57.424 25.926 0.00 0.00 38.67 1.52
6434 8569 4.412199 ACATGGGCTAATAGTGCTAGGAAA 59.588 41.667 0.00 0.00 0.00 3.13
6435 8570 3.973973 ACATGGGCTAATAGTGCTAGGAA 59.026 43.478 0.00 0.00 0.00 3.36
6436 8571 3.587498 ACATGGGCTAATAGTGCTAGGA 58.413 45.455 0.00 0.00 0.00 2.94
6442 8577 7.624360 TTCTTTGTTACATGGGCTAATAGTG 57.376 36.000 0.00 0.00 0.00 2.74
6498 8640 8.205297 CACTACGCATTTAGCAAAACTTAAAAC 58.795 33.333 0.00 0.00 46.13 2.43
6516 8658 6.103330 TGTCAATTCTATTAAGCACTACGCA 58.897 36.000 0.00 0.00 46.13 5.24
6522 8664 7.095229 TGTGTGACTGTCAATTCTATTAAGCAC 60.095 37.037 12.81 11.55 0.00 4.40
6537 8679 1.062587 GTTGTGCACTGTGTGACTGTC 59.937 52.381 19.41 0.00 35.23 3.51
6538 8680 1.086696 GTTGTGCACTGTGTGACTGT 58.913 50.000 19.41 0.00 35.23 3.55
6539 8681 1.372582 AGTTGTGCACTGTGTGACTG 58.627 50.000 19.41 0.00 35.23 3.51
6540 8682 2.936498 GTTAGTTGTGCACTGTGTGACT 59.064 45.455 19.41 13.44 35.97 3.41
6541 8683 2.675844 TGTTAGTTGTGCACTGTGTGAC 59.324 45.455 19.41 10.13 35.97 3.67
6542 8684 2.675844 GTGTTAGTTGTGCACTGTGTGA 59.324 45.455 19.41 0.00 35.97 3.58
6543 8685 2.677836 AGTGTTAGTTGTGCACTGTGTG 59.322 45.455 19.41 0.00 41.33 3.82
6544 8686 2.985896 AGTGTTAGTTGTGCACTGTGT 58.014 42.857 19.41 2.62 41.33 3.72
6545 8687 3.487376 CCAAGTGTTAGTTGTGCACTGTG 60.487 47.826 19.41 2.76 41.94 3.66
6564 8706 4.953940 AGCAAAAATAAGTTGGAGCCAA 57.046 36.364 0.00 0.00 0.00 4.52
6587 8730 9.426837 TGTACTATGTTGACACCTTTATAACAC 57.573 33.333 0.00 0.00 34.50 3.32
6636 8779 0.320697 ACTGCCGGACAAGAGGTAAC 59.679 55.000 5.05 0.00 0.00 2.50
6650 8793 7.010091 CACCGAATATAAATTTTGGAAACTGCC 59.990 37.037 0.00 0.00 0.00 4.85
6658 8801 6.748132 AGCATCCACCGAATATAAATTTTGG 58.252 36.000 0.00 0.00 0.00 3.28
6700 8843 8.863872 AATATAACACCATTCCTATACAAGGC 57.136 34.615 0.00 0.00 46.10 4.35
6732 8875 4.098914 AGGAGAGCCAAAATTGTACACA 57.901 40.909 0.00 0.00 36.29 3.72
6759 8902 4.396166 ACATCAGCAAACCTTCTATTTCCG 59.604 41.667 0.00 0.00 0.00 4.30
6806 8949 5.352569 AGAGTTTGAGAGTTCTTGTGTGTTG 59.647 40.000 0.00 0.00 0.00 3.33
6807 8950 5.491982 AGAGTTTGAGAGTTCTTGTGTGTT 58.508 37.500 0.00 0.00 0.00 3.32
6808 8951 5.091261 AGAGTTTGAGAGTTCTTGTGTGT 57.909 39.130 0.00 0.00 0.00 3.72
6809 8952 7.439356 TGAATAGAGTTTGAGAGTTCTTGTGTG 59.561 37.037 0.00 0.00 0.00 3.82
6810 8953 7.500992 TGAATAGAGTTTGAGAGTTCTTGTGT 58.499 34.615 0.00 0.00 0.00 3.72
6811 8954 7.953158 TGAATAGAGTTTGAGAGTTCTTGTG 57.047 36.000 0.00 0.00 0.00 3.33
6812 8955 9.868277 CTATGAATAGAGTTTGAGAGTTCTTGT 57.132 33.333 0.00 0.00 32.05 3.16
6815 8958 9.474313 AGTCTATGAATAGAGTTTGAGAGTTCT 57.526 33.333 0.14 0.00 39.41 3.01
6918 9089 2.022195 GGCTGTGATCACAATCTGCAT 58.978 47.619 28.51 0.00 41.33 3.96
7125 9298 8.977412 AGAACAAAAGAGGATTGGAACTAAAAA 58.023 29.630 0.00 0.00 32.02 1.94
7133 9306 7.020827 ACTATCAGAACAAAAGAGGATTGGA 57.979 36.000 0.00 0.00 32.02 3.53
7134 9307 8.970859 ATACTATCAGAACAAAAGAGGATTGG 57.029 34.615 0.00 0.00 32.02 3.16
7141 9314 8.289939 ACCGACTATACTATCAGAACAAAAGA 57.710 34.615 0.00 0.00 0.00 2.52
7161 9335 6.402875 GGGAATGTTGACAATACTTAACCGAC 60.403 42.308 0.00 0.00 0.00 4.79
7184 9358 5.046288 AGATCTGAAGGATAAAAGCAGGG 57.954 43.478 0.00 0.00 34.33 4.45
7237 9411 2.654749 TCGCCTGTGTCAGAATACAG 57.345 50.000 8.50 8.50 42.51 2.74
7303 9477 1.684450 TCACTAACAAGCACGTCAGGA 59.316 47.619 0.00 0.00 0.00 3.86
7345 9521 2.488937 TGCAAGCAATGTCACTATGGTG 59.511 45.455 2.16 2.16 44.23 4.17
7374 9550 8.773404 ACAGGTAAACATATCAACTTGTAGTC 57.227 34.615 0.00 0.00 31.32 2.59
7582 9974 3.304726 GGAGTAGTTTTTCCACAAGCTGC 60.305 47.826 0.00 0.00 33.55 5.25
7624 10016 1.895707 GCCATCCCTGATTGAGCGG 60.896 63.158 0.00 0.00 0.00 5.52
7864 10339 7.446013 ACTTTAAGATAACACGGTCAATTTGGA 59.554 33.333 0.00 0.00 0.00 3.53
7880 10355 6.296026 AGTTCCAGCACACAACTTTAAGATA 58.704 36.000 0.00 0.00 0.00 1.98
7881 10356 5.133221 AGTTCCAGCACACAACTTTAAGAT 58.867 37.500 0.00 0.00 0.00 2.40
7917 10395 0.250295 CCTGTTCCTTCCTGTGCGAA 60.250 55.000 0.00 0.00 0.00 4.70
7924 10402 6.329460 GGTACCTTAATATCCTGTTCCTTCCT 59.671 42.308 4.06 0.00 0.00 3.36
8041 10555 0.246360 GTTGCGGGGAAAATGAAGGG 59.754 55.000 0.00 0.00 0.00 3.95
8052 10566 4.061596 ACAAATACATTTTTGTTGCGGGG 58.938 39.130 0.00 0.00 45.14 5.73
8066 10580 8.147704 TCAGACAACATAGTGAGAACAAATACA 58.852 33.333 0.00 0.00 0.00 2.29
8078 10592 3.620374 GTGCAGGATCAGACAACATAGTG 59.380 47.826 0.00 0.00 0.00 2.74
8100 10614 1.609208 AGTAACCCTGCAAGCACAAG 58.391 50.000 0.00 0.00 0.00 3.16
8104 10618 2.105821 ACACTTAGTAACCCTGCAAGCA 59.894 45.455 0.00 0.00 0.00 3.91
8141 10655 7.769272 TGCTGCATTAAAAATAAACATAGCC 57.231 32.000 0.00 0.00 0.00 3.93
8149 10663 6.183360 GGTTGCGAATGCTGCATTAAAAATAA 60.183 34.615 26.32 13.33 42.84 1.40
8152 10666 3.431572 GGTTGCGAATGCTGCATTAAAAA 59.568 39.130 26.32 17.15 42.84 1.94
8153 10667 2.992543 GGTTGCGAATGCTGCATTAAAA 59.007 40.909 26.32 17.47 42.84 1.52
8154 10668 2.029560 TGGTTGCGAATGCTGCATTAAA 60.030 40.909 26.32 17.78 42.84 1.52
8161 10675 0.314935 ACCTTTGGTTGCGAATGCTG 59.685 50.000 0.00 0.00 43.34 4.41
8180 10694 7.772292 CCAGATTTTGTCTTCCAGATCAGATTA 59.228 37.037 0.00 0.00 34.00 1.75
8213 10727 3.660970 TGGATTAGGCAGGCAACAATA 57.339 42.857 0.00 0.00 41.41 1.90
8232 10746 4.400251 ACCAGCCAGAAATATGTTGACATG 59.600 41.667 6.87 0.00 37.15 3.21
8273 10788 2.257894 CACGTCTTCAGAGCAGACATC 58.742 52.381 3.64 0.00 40.78 3.06
8274 10789 1.671261 GCACGTCTTCAGAGCAGACAT 60.671 52.381 3.64 0.00 40.78 3.06
8275 10790 0.319040 GCACGTCTTCAGAGCAGACA 60.319 55.000 3.64 0.00 40.78 3.41
8284 10799 0.673333 ATGGCGAATGCACGTCTTCA 60.673 50.000 2.91 0.00 45.35 3.02
8321 10836 6.144724 GCTTAGTCGAGGCTTTGTTATAGATG 59.855 42.308 0.00 0.00 0.00 2.90
8324 10839 5.460419 CAGCTTAGTCGAGGCTTTGTTATAG 59.540 44.000 0.00 0.00 33.74 1.31
8347 10862 3.854437 AGATCCATCTGATAGCTGTCCA 58.146 45.455 8.11 0.00 35.42 4.02
8377 10892 7.450944 TGGCCAAGCATATTCACATTCATAATA 59.549 33.333 0.61 0.00 0.00 0.98
8382 10897 3.363627 TGGCCAAGCATATTCACATTCA 58.636 40.909 0.61 0.00 0.00 2.57
8393 10908 2.233271 CGATAAGGATTGGCCAAGCAT 58.767 47.619 33.02 25.72 40.02 3.79
8409 10924 1.136110 TGAGAAGCATGAACGCCGATA 59.864 47.619 0.00 0.00 0.00 2.92
8446 10961 3.567585 TGGCTTTTCACATGAATGTTCGA 59.432 39.130 0.00 0.00 39.39 3.71
8447 10962 3.899734 TGGCTTTTCACATGAATGTTCG 58.100 40.909 0.00 0.00 39.39 3.95
8486 11001 1.888512 GATTCAAAGCACTTGGGAGCA 59.111 47.619 0.00 0.00 35.56 4.26
8509 11024 6.092807 ACCGAGAATTTTGAGCTTCTATTGTC 59.907 38.462 0.00 0.00 31.99 3.18
8519 11034 4.007659 TCCCTTAACCGAGAATTTTGAGC 58.992 43.478 0.00 0.00 0.00 4.26
8526 11041 1.210538 GGGGTCCCTTAACCGAGAAT 58.789 55.000 8.15 0.00 40.46 2.40
8546 11061 6.039941 AGGGAGTACTTCTGAAAGATACATCG 59.960 42.308 0.01 0.00 46.36 3.84
8556 11071 2.599408 ACGGAGGGAGTACTTCTGAA 57.401 50.000 8.56 0.00 0.00 3.02
8557 11072 2.444421 GAACGGAGGGAGTACTTCTGA 58.556 52.381 8.56 0.00 0.00 3.27
8566 11081 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
8567 11082 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
8568 11083 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
8569 11084 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
8570 11085 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
8571 11086 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
8572 11087 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
8573 11088 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
8574 11089 3.841643 TCTTGGACGAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
8575 11090 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
8576 11091 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
8577 11092 5.143916 CATTTCTTGGACGAGTAATTCCG 57.856 43.478 0.00 0.00 0.00 4.30
8639 11154 5.296283 TCCGTTCGGAATTACTTGTCAAAAA 59.704 36.000 11.66 0.00 0.00 1.94
8640 11155 4.815308 TCCGTTCGGAATTACTTGTCAAAA 59.185 37.500 11.66 0.00 0.00 2.44
8641 11156 4.378774 TCCGTTCGGAATTACTTGTCAAA 58.621 39.130 11.66 0.00 0.00 2.69
8642 11157 3.991773 CTCCGTTCGGAATTACTTGTCAA 59.008 43.478 14.79 0.00 33.41 3.18
8643 11158 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
8644 11159 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
8645 11160 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
8646 11161 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
8647 11162 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
8648 11163 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
8649 11164 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
8650 11165 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
8651 11166 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
8652 11167 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
8653 11168 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
8654 11169 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
8655 11170 1.755179 TAACTACTCCCTCCGTTCGG 58.245 55.000 4.74 4.74 0.00 4.30
8656 11171 2.947652 TCATAACTACTCCCTCCGTTCG 59.052 50.000 0.00 0.00 0.00 3.95
8657 11172 4.583489 TCATCATAACTACTCCCTCCGTTC 59.417 45.833 0.00 0.00 0.00 3.95
8658 11173 4.543689 TCATCATAACTACTCCCTCCGTT 58.456 43.478 0.00 0.00 0.00 4.44
8659 11174 4.180377 TCATCATAACTACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
8660 11175 5.531122 TTTCATCATAACTACTCCCTCCG 57.469 43.478 0.00 0.00 0.00 4.63
8661 11176 6.056236 GGTTTTCATCATAACTACTCCCTCC 58.944 44.000 0.00 0.00 0.00 4.30
8662 11177 5.753921 CGGTTTTCATCATAACTACTCCCTC 59.246 44.000 0.00 0.00 0.00 4.30
8663 11178 5.396436 CCGGTTTTCATCATAACTACTCCCT 60.396 44.000 0.00 0.00 0.00 4.20
8664 11179 4.814771 CCGGTTTTCATCATAACTACTCCC 59.185 45.833 0.00 0.00 0.00 4.30
8665 11180 5.425630 ACCGGTTTTCATCATAACTACTCC 58.574 41.667 0.00 0.00 0.00 3.85
8666 11181 5.231568 CGACCGGTTTTCATCATAACTACTC 59.768 44.000 9.42 0.00 0.00 2.59
8670 11185 3.055675 TCCGACCGGTTTTCATCATAACT 60.056 43.478 9.42 0.00 36.47 2.24
8706 11221 8.616076 CCAAGATAAACAATTCAGTCAGGATAC 58.384 37.037 0.00 0.00 0.00 2.24
8720 11235 8.112822 TCCCAACTTCATATCCAAGATAAACAA 58.887 33.333 0.00 0.00 0.00 2.83
8721 11236 7.638444 TCCCAACTTCATATCCAAGATAAACA 58.362 34.615 0.00 0.00 0.00 2.83
8746 11261 7.759489 ATTTACCGCACATCCATATTTGTAT 57.241 32.000 0.00 0.00 0.00 2.29
8762 11277 7.594386 GGATACTCTGAAGTTAGTATTTACCGC 59.406 40.741 0.00 0.00 38.67 5.68
8763 11278 8.627403 TGGATACTCTGAAGTTAGTATTTACCG 58.373 37.037 0.00 0.00 38.67 4.02
8795 11310 7.421599 TCTTATCAGTATTCTTCTCTTGCTCG 58.578 38.462 0.00 0.00 0.00 5.03
8815 11330 3.377172 GCACGCAAAAGGGTGTATCTTAT 59.623 43.478 13.07 0.00 36.54 1.73
8822 11337 1.000717 GTATTGCACGCAAAAGGGTGT 60.001 47.619 8.76 0.00 39.55 4.16
8823 11338 1.000827 TGTATTGCACGCAAAAGGGTG 60.001 47.619 8.76 8.13 39.55 4.61
8824 11339 1.323412 TGTATTGCACGCAAAAGGGT 58.677 45.000 8.76 0.00 39.55 4.34
8827 11342 3.626977 TCACTTGTATTGCACGCAAAAG 58.373 40.909 8.76 10.32 39.55 2.27
8831 11346 1.069296 GCTTCACTTGTATTGCACGCA 60.069 47.619 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.