Multiple sequence alignment - TraesCS2D01G362100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G362100 chr2D 100.000 5178 0 0 1 5178 468103977 468098800 0.000000e+00 9563.0
1 TraesCS2D01G362100 chr2D 81.606 386 61 8 4796 5172 591539744 591540128 1.400000e-80 311.0
2 TraesCS2D01G362100 chr2D 83.019 159 17 6 1 157 618282146 618281996 9.040000e-28 135.0
3 TraesCS2D01G362100 chr2D 84.112 107 4 3 4199 4305 467252357 467252264 1.990000e-14 91.6
4 TraesCS2D01G362100 chr2D 97.674 43 1 0 4414 4456 468099529 468099487 2.000000e-09 75.0
5 TraesCS2D01G362100 chr2D 97.674 43 1 0 4449 4491 468099564 468099522 2.000000e-09 75.0
6 TraesCS2D01G362100 chr2A 92.003 3889 192 47 490 4308 608036587 608032748 0.000000e+00 5349.0
7 TraesCS2D01G362100 chr2A 85.597 486 55 14 17 498 608037840 608037366 3.600000e-136 496.0
8 TraesCS2D01G362100 chr2A 81.118 519 87 9 4663 5172 726289157 726289673 6.240000e-109 405.0
9 TraesCS2D01G362100 chr2A 78.916 498 91 11 4683 5172 726222146 726222637 5.000000e-85 326.0
10 TraesCS2D01G362100 chr2A 84.906 159 14 6 1 157 749097841 749097691 8.980000e-33 152.0
11 TraesCS2D01G362100 chr2B 95.576 2871 104 7 874 3742 546590649 546587800 0.000000e+00 4577.0
12 TraesCS2D01G362100 chr2B 92.680 724 31 10 3742 4456 546587742 546587032 0.000000e+00 1024.0
13 TraesCS2D01G362100 chr2B 87.810 484 36 13 3 465 546591672 546591191 3.530000e-151 545.0
14 TraesCS2D01G362100 chr2B 91.237 388 34 0 4791 5178 546428321 546427934 3.550000e-146 529.0
15 TraesCS2D01G362100 chr2B 90.994 322 11 4 505 811 546590987 546590669 8.020000e-113 418.0
16 TraesCS2D01G362100 chr2B 80.228 526 80 16 4665 5172 35401045 35401564 1.760000e-99 374.0
17 TraesCS2D01G362100 chr2B 86.603 209 24 4 4443 4649 800263607 800263813 1.450000e-55 228.0
18 TraesCS2D01G362100 chr2B 77.841 176 22 9 400 562 156631991 156631820 5.520000e-15 93.5
19 TraesCS2D01G362100 chr7B 81.996 511 84 5 4669 5175 210802732 210802226 1.330000e-115 427.0
20 TraesCS2D01G362100 chr7B 79.902 204 38 2 4464 4664 210802975 210802772 4.180000e-31 147.0
21 TraesCS2D01G362100 chr4A 80.864 486 75 14 4701 5178 723493289 723492814 2.950000e-97 366.0
22 TraesCS2D01G362100 chr4A 77.622 286 45 5 4383 4665 726699337 726699068 6.940000e-34 156.0
23 TraesCS2D01G362100 chr3B 80.624 449 75 9 4728 5172 403402298 403402738 2.310000e-88 337.0
24 TraesCS2D01G362100 chr3B 79.845 129 20 4 3 128 748624182 748624057 7.140000e-14 89.8
25 TraesCS2D01G362100 chr6A 83.168 303 48 2 4804 5103 487208291 487208593 1.840000e-69 274.0
26 TraesCS2D01G362100 chr6A 83.158 95 11 4 4725 4817 305262913 305263004 1.200000e-11 82.4
27 TraesCS2D01G362100 chr5A 87.179 156 16 3 3 157 665778359 665778511 1.920000e-39 174.0
28 TraesCS2D01G362100 chr6D 87.805 123 12 3 3 125 32381959 32382078 1.940000e-29 141.0
29 TraesCS2D01G362100 chr6D 78.922 204 33 9 4464 4664 60299998 60300194 4.210000e-26 130.0
30 TraesCS2D01G362100 chr3D 85.827 127 15 3 3 129 382779301 382779178 1.170000e-26 132.0
31 TraesCS2D01G362100 chr1D 77.778 207 46 0 4458 4664 483699485 483699691 1.510000e-25 128.0
32 TraesCS2D01G362100 chr5B 80.892 157 21 9 3 157 129317695 129317844 1.180000e-21 115.0
33 TraesCS2D01G362100 chr1A 89.041 73 8 0 4465 4537 547580728 547580656 1.990000e-14 91.6
34 TraesCS2D01G362100 chr7A 85.135 74 11 0 4464 4537 215929686 215929613 5.560000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G362100 chr2D 468098800 468103977 5177 True 9563.0 9563 100.000 1 5178 1 chr2D.!!$R2 5177
1 TraesCS2D01G362100 chr2A 608032748 608037840 5092 True 2922.5 5349 88.800 17 4308 2 chr2A.!!$R2 4291
2 TraesCS2D01G362100 chr2A 726289157 726289673 516 False 405.0 405 81.118 4663 5172 1 chr2A.!!$F2 509
3 TraesCS2D01G362100 chr2B 546587032 546591672 4640 True 1641.0 4577 91.765 3 4456 4 chr2B.!!$R3 4453
4 TraesCS2D01G362100 chr2B 35401045 35401564 519 False 374.0 374 80.228 4665 5172 1 chr2B.!!$F1 507
5 TraesCS2D01G362100 chr7B 210802226 210802975 749 True 287.0 427 80.949 4464 5175 2 chr7B.!!$R1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 1495 0.099082 CTAGCGGCCTAGCGCTATAC 59.901 60.0 19.19 12.76 38.84 1.47 F
1456 2326 0.179094 TTAGCCATTACGGTCCAGCG 60.179 55.0 0.00 0.00 36.97 5.18 F
1681 2564 0.243907 GAGCTGCGTGTGGTTCTCTA 59.756 55.0 0.00 0.00 0.00 2.43 F
1785 2670 0.380733 TAGCTGTGCTGATCGTACGG 59.619 55.0 16.52 0.00 40.10 4.02 F
1796 2681 0.389426 ATCGTACGGCACTTCACACC 60.389 55.0 16.52 0.00 0.00 4.16 F
1938 2823 0.471971 TATCAGGGGCAGACTAGGGC 60.472 60.0 0.00 0.00 0.00 5.19 F
3855 4802 0.746659 GCAACCACCACTTCTGCTTT 59.253 50.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 2804 0.471971 GCCCTAGTCTGCCCCTGATA 60.472 60.000 0.0 0.0 0.0 2.15 R
3091 3978 0.687354 ACTCCGTTGGAAGCTCACAT 59.313 50.000 0.0 0.0 0.0 3.21 R
3584 4473 4.848299 CAGTTCGCTTCTAAATGCTGAAAC 59.152 41.667 0.0 0.0 0.0 2.78 R
3622 4511 7.162082 CCCACTCTTGAAACTACAGAACTAAT 58.838 38.462 0.0 0.0 0.0 1.73 R
3855 4802 8.021898 TCTCATGGATGTAAATATCACAGTCA 57.978 34.615 0.0 0.0 0.0 3.41 R
3983 4935 2.658325 CAGAAAGCTTACAACAATGCGC 59.342 45.455 0.0 0.0 0.0 6.09 R
4666 5650 0.037419 CCCGCCCAAAAATCAACCTG 60.037 55.000 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 89 6.591935 TGTGTCTACTTTGAACTTGGATCTT 58.408 36.000 0.00 0.00 0.00 2.40
195 223 4.974645 TGAGAGTATCCAAGTGGTTGTT 57.025 40.909 0.00 0.00 33.66 2.83
220 249 4.260170 AGAGCAACATGGATGAGAAGTTC 58.740 43.478 0.00 0.00 0.00 3.01
294 323 4.202080 CGAGATTACCGTTTATGAGGGTCA 60.202 45.833 0.00 0.00 42.78 4.02
317 346 1.306654 TAGCAATCCGGGGTCACCT 60.307 57.895 0.00 0.00 36.97 4.00
424 457 3.217242 GCTCAAAGCTCGTGAGGAA 57.783 52.632 22.36 0.00 42.36 3.36
426 459 2.079925 GCTCAAAGCTCGTGAGGAAAT 58.920 47.619 22.36 0.00 42.36 2.17
427 460 2.159599 GCTCAAAGCTCGTGAGGAAATG 60.160 50.000 22.36 4.35 42.36 2.32
429 462 3.329386 TCAAAGCTCGTGAGGAAATGAG 58.671 45.455 0.00 0.00 36.45 2.90
431 464 2.002127 GCTCGTGAGGAAATGAGCG 58.998 57.895 2.89 0.00 46.25 5.03
432 465 2.002127 CTCGTGAGGAAATGAGCGC 58.998 57.895 0.00 0.00 0.00 5.92
433 466 0.459237 CTCGTGAGGAAATGAGCGCT 60.459 55.000 11.27 11.27 0.00 5.92
434 467 0.815095 TCGTGAGGAAATGAGCGCTA 59.185 50.000 11.50 0.00 0.00 4.26
472 510 3.611113 GCTCGTGCTCGTAAGTTAATGAA 59.389 43.478 8.17 0.00 38.33 2.57
487 525 7.590139 AGTTAATGAACCGAGCTGATCAGCA 62.590 44.000 40.91 23.93 45.65 4.41
658 1492 1.303398 ATCTAGCGGCCTAGCGCTA 60.303 57.895 17.75 17.75 40.73 4.26
661 1495 0.099082 CTAGCGGCCTAGCGCTATAC 59.901 60.000 19.19 12.76 38.84 1.47
662 1496 0.322277 TAGCGGCCTAGCGCTATACT 60.322 55.000 19.19 12.84 43.00 2.12
671 1505 3.002348 CCTAGCGCTATACTGCCAAAAAC 59.998 47.826 19.19 0.00 0.00 2.43
675 1509 3.984633 GCGCTATACTGCCAAAAACAAAA 59.015 39.130 0.00 0.00 0.00 2.44
860 1719 1.455959 CCTCCCCGATCTCCGTTCT 60.456 63.158 0.00 0.00 36.31 3.01
1037 1897 0.257039 ATCCCAGCATCCAACTCCAC 59.743 55.000 0.00 0.00 0.00 4.02
1172 2032 0.257616 AAGAGGAGGAGGAGGAGACG 59.742 60.000 0.00 0.00 0.00 4.18
1415 2275 3.199289 AGGTTAGTTGCTACGCCCTATTT 59.801 43.478 5.06 0.00 0.00 1.40
1416 2276 3.558829 GGTTAGTTGCTACGCCCTATTTC 59.441 47.826 0.00 0.00 0.00 2.17
1428 2288 3.243201 CGCCCTATTTCTTGATTTCCTGC 60.243 47.826 0.00 0.00 0.00 4.85
1430 2290 3.638627 CCCTATTTCTTGATTTCCTGCCC 59.361 47.826 0.00 0.00 0.00 5.36
1448 2318 2.476821 CCCGTTAGGTTAGCCATTACG 58.523 52.381 0.00 4.45 37.19 3.18
1449 2319 2.476821 CCGTTAGGTTAGCCATTACGG 58.523 52.381 17.16 17.16 43.40 4.02
1450 2320 2.159057 CCGTTAGGTTAGCCATTACGGT 60.159 50.000 20.41 0.00 43.65 4.83
1451 2321 3.118542 CGTTAGGTTAGCCATTACGGTC 58.881 50.000 0.00 0.00 36.97 4.79
1452 2322 3.461061 GTTAGGTTAGCCATTACGGTCC 58.539 50.000 0.00 0.00 36.97 4.46
1453 2323 1.575419 AGGTTAGCCATTACGGTCCA 58.425 50.000 0.00 0.00 36.97 4.02
1454 2324 1.485066 AGGTTAGCCATTACGGTCCAG 59.515 52.381 0.00 0.00 36.97 3.86
1455 2325 1.296727 GTTAGCCATTACGGTCCAGC 58.703 55.000 0.00 0.00 36.97 4.85
1456 2326 0.179094 TTAGCCATTACGGTCCAGCG 60.179 55.000 0.00 0.00 36.97 5.18
1457 2327 2.638330 TAGCCATTACGGTCCAGCGC 62.638 60.000 0.00 0.00 36.97 5.92
1481 2351 1.517538 TTGGGGATCAATGGGGCTGT 61.518 55.000 0.00 0.00 0.00 4.40
1571 2451 2.544267 GGTGTTCTTGCACACTGTCTAC 59.456 50.000 5.30 0.00 45.56 2.59
1587 2467 0.747255 CTACCGAGATGTGGACCAGG 59.253 60.000 0.00 0.00 0.00 4.45
1614 2494 0.916086 TTGGTGAAGTGGTGACTGGT 59.084 50.000 0.00 0.00 30.61 4.00
1617 2497 1.583054 GTGAAGTGGTGACTGGTGAC 58.417 55.000 0.00 0.00 30.61 3.67
1631 2514 1.208052 TGGTGACCAGCTCTAATGCTC 59.792 52.381 0.00 0.00 41.98 4.26
1655 2538 8.662781 TCTGGATTGATTTGTATGTTAGTAGC 57.337 34.615 0.00 0.00 0.00 3.58
1679 2562 2.375766 CGAGCTGCGTGTGGTTCTC 61.376 63.158 0.00 0.00 34.64 2.87
1681 2564 0.243907 GAGCTGCGTGTGGTTCTCTA 59.756 55.000 0.00 0.00 0.00 2.43
1701 2584 5.946486 TCTATAGAGAGAATGCAGGTCTGA 58.054 41.667 7.40 0.00 0.00 3.27
1706 2589 3.113824 AGAGAATGCAGGTCTGAATCCT 58.886 45.455 7.40 0.00 35.45 3.24
1708 2591 4.344679 AGAGAATGCAGGTCTGAATCCTAG 59.655 45.833 7.40 0.00 33.54 3.02
1711 2594 1.759445 TGCAGGTCTGAATCCTAGAGC 59.241 52.381 1.65 0.00 41.66 4.09
1713 2596 1.036707 AGGTCTGAATCCTAGAGCGC 58.963 55.000 0.00 0.00 44.92 5.92
1733 2618 3.670055 CGCTGCTTCATTTTGTTTGTAGG 59.330 43.478 0.00 0.00 0.00 3.18
1752 2637 6.054295 TGTAGGAAGAACTAGTAGACGATCC 58.946 44.000 3.59 10.29 0.00 3.36
1753 2638 5.113446 AGGAAGAACTAGTAGACGATCCA 57.887 43.478 3.59 0.00 0.00 3.41
1785 2670 0.380733 TAGCTGTGCTGATCGTACGG 59.619 55.000 16.52 0.00 40.10 4.02
1794 2679 0.599060 TGATCGTACGGCACTTCACA 59.401 50.000 16.52 2.03 0.00 3.58
1796 2681 0.389426 ATCGTACGGCACTTCACACC 60.389 55.000 16.52 0.00 0.00 4.16
1894 2779 2.645297 TGTGTTAGGGCATTTGGTAGGA 59.355 45.455 0.00 0.00 0.00 2.94
1901 2786 3.769300 AGGGCATTTGGTAGGATTTGTTC 59.231 43.478 0.00 0.00 0.00 3.18
1915 2800 7.516198 AGGATTTGTTCATATGGCAGTTATC 57.484 36.000 2.13 7.02 0.00 1.75
1916 2801 7.062322 AGGATTTGTTCATATGGCAGTTATCA 58.938 34.615 2.13 0.00 0.00 2.15
1917 2802 7.013655 AGGATTTGTTCATATGGCAGTTATCAC 59.986 37.037 2.13 0.00 0.00 3.06
1918 2803 7.013655 GGATTTGTTCATATGGCAGTTATCACT 59.986 37.037 2.13 0.00 0.00 3.41
1919 2804 7.701539 TTTGTTCATATGGCAGTTATCACTT 57.298 32.000 2.13 0.00 0.00 3.16
1920 2805 8.800370 TTTGTTCATATGGCAGTTATCACTTA 57.200 30.769 2.13 0.00 0.00 2.24
1921 2806 8.978874 TTGTTCATATGGCAGTTATCACTTAT 57.021 30.769 2.13 0.00 0.00 1.73
1938 2823 0.471971 TATCAGGGGCAGACTAGGGC 60.472 60.000 0.00 0.00 0.00 5.19
1962 2848 6.264292 GCCAAAACCAAAAATTTAATGGAGGT 59.736 34.615 22.98 9.21 37.66 3.85
1966 2852 8.560355 AAACCAAAAATTTAATGGAGGTATGC 57.440 30.769 22.98 0.00 37.66 3.14
2108 2994 7.695201 CAGAACTTTATATGTCTTGTGCATGTG 59.305 37.037 0.00 0.00 0.00 3.21
2241 3128 8.986929 ACAATTAGGAATTTAGGATCCTCAAG 57.013 34.615 20.22 0.92 42.44 3.02
2252 3139 8.477419 TTTAGGATCCTCAAGATTTGTTGTTT 57.523 30.769 20.22 0.00 34.42 2.83
2292 3179 8.479280 GTTGCATTTTATACTGTTCACAACTTG 58.521 33.333 0.00 0.00 32.91 3.16
2664 3551 3.955771 TTTTTGTACTCCGCACTGAAC 57.044 42.857 0.00 0.00 0.00 3.18
2730 3617 7.231317 TGCAAGAAATCCAAAGTTAGATGTTCT 59.769 33.333 0.00 0.00 0.00 3.01
2793 3680 1.902508 TGTGAAGAGACTGGTGGATCC 59.097 52.381 4.20 4.20 0.00 3.36
2849 3736 6.202516 TGCTTGTGTTTGTAGCTTTTACTT 57.797 33.333 0.00 0.00 35.93 2.24
2876 3763 8.617290 TGATATTCAAATCCTGTGATGATGAG 57.383 34.615 0.00 0.00 32.44 2.90
3052 3939 4.237724 GCCACAAGAAAATTAAGTCTGGC 58.762 43.478 0.00 0.00 0.00 4.85
3091 3978 5.565509 TGTCCCAGATGCAAAGTTAATGTA 58.434 37.500 0.00 0.00 0.00 2.29
3301 4188 0.819259 TCTCCGCCCAAATATGCTGC 60.819 55.000 0.00 0.00 0.00 5.25
3328 4215 6.668323 TCTTGCTTCGGTTAATTTTCTTCAG 58.332 36.000 0.00 0.00 0.00 3.02
3429 4318 8.435430 GTCTTTGTTGCCTTATTTATTTTCTGC 58.565 33.333 0.00 0.00 0.00 4.26
3547 4436 2.552315 CCCACGAACAAAGTTGCATAGT 59.448 45.455 0.00 0.00 0.00 2.12
3580 4469 7.141363 GCAACATATATGAAAACCAGCCTTAG 58.859 38.462 19.63 0.00 0.00 2.18
3584 4473 9.071276 ACATATATGAAAACCAGCCTTAGATTG 57.929 33.333 19.63 0.00 0.00 2.67
3855 4802 0.746659 GCAACCACCACTTCTGCTTT 59.253 50.000 0.00 0.00 0.00 3.51
4324 5300 5.163131 GCTTTATTAATCCCCTGGTCCACTA 60.163 44.000 0.00 0.00 0.00 2.74
4339 5315 1.561542 CCACTAAGGGCATCTCCAACT 59.438 52.381 0.00 0.00 36.21 3.16
4343 5324 0.693049 AAGGGCATCTCCAACTCGTT 59.307 50.000 0.00 0.00 36.21 3.85
4344 5325 1.568504 AGGGCATCTCCAACTCGTTA 58.431 50.000 0.00 0.00 36.21 3.18
4352 5333 2.557056 TCTCCAACTCGTTAGTGGACAG 59.443 50.000 0.00 0.00 35.62 3.51
4401 5382 3.845781 AGTCGGTCATCCAATGCTATT 57.154 42.857 0.00 0.00 0.00 1.73
4433 5414 6.752815 TGTCTCAAATCGGTTTTAAACAAACC 59.247 34.615 10.14 6.44 44.69 3.27
4456 5437 4.261155 CGGATGAATTACATGCAAATCGGT 60.261 41.667 0.00 0.00 45.52 4.69
4457 5438 5.591099 GGATGAATTACATGCAAATCGGTT 58.409 37.500 0.00 0.00 44.79 4.44
4458 5439 6.042143 GGATGAATTACATGCAAATCGGTTT 58.958 36.000 0.00 0.00 44.79 3.27
4459 5440 6.534793 GGATGAATTACATGCAAATCGGTTTT 59.465 34.615 0.00 0.00 44.79 2.43
4460 5441 7.704472 GGATGAATTACATGCAAATCGGTTTTA 59.296 33.333 0.00 0.00 44.79 1.52
4461 5442 8.994429 ATGAATTACATGCAAATCGGTTTTAA 57.006 26.923 0.00 0.00 37.87 1.52
4462 5443 8.818141 TGAATTACATGCAAATCGGTTTTAAA 57.182 26.923 0.00 0.00 0.00 1.52
4482 5463 8.749841 TTTAAACAAACCGGATGAATTACATG 57.250 30.769 9.46 0.00 39.56 3.21
4493 5474 2.160615 TGAATTACATGCAAACCGGACG 59.839 45.455 9.46 0.00 0.00 4.79
4495 5476 1.880271 TTACATGCAAACCGGACGAA 58.120 45.000 9.46 0.00 0.00 3.85
4496 5477 1.880271 TACATGCAAACCGGACGAAA 58.120 45.000 9.46 0.00 0.00 3.46
4497 5478 1.025812 ACATGCAAACCGGACGAAAA 58.974 45.000 9.46 0.00 0.00 2.29
4498 5479 1.268845 ACATGCAAACCGGACGAAAAC 60.269 47.619 9.46 0.00 0.00 2.43
4499 5480 1.025812 ATGCAAACCGGACGAAAACA 58.974 45.000 9.46 0.00 0.00 2.83
4501 5482 1.405821 TGCAAACCGGACGAAAACATT 59.594 42.857 9.46 0.00 0.00 2.71
4504 5485 3.422876 GCAAACCGGACGAAAACATTTAC 59.577 43.478 9.46 0.00 0.00 2.01
4557 5541 4.925646 CGGGTTGTGGTAAAACTAGTCTAC 59.074 45.833 0.00 1.11 0.00 2.59
4560 5544 6.393171 GGTTGTGGTAAAACTAGTCTACGAT 58.607 40.000 0.00 0.00 0.00 3.73
4562 5546 6.822667 TGTGGTAAAACTAGTCTACGATCA 57.177 37.500 0.00 0.00 0.00 2.92
4563 5547 6.849502 TGTGGTAAAACTAGTCTACGATCAG 58.150 40.000 0.00 0.00 0.00 2.90
4576 5560 3.157217 GATCAGCCGCGGTGGATCT 62.157 63.158 34.30 20.75 42.00 2.75
4577 5561 2.650813 GATCAGCCGCGGTGGATCTT 62.651 60.000 34.30 18.27 42.00 2.40
4584 5568 1.596934 GCGGTGGATCTTCACTCCA 59.403 57.895 2.68 0.00 40.49 3.86
4586 5570 1.610624 GCGGTGGATCTTCACTCCAAA 60.611 52.381 2.68 0.00 44.19 3.28
4607 5591 2.840038 AGACATGTCTTCCCTATGTGCA 59.160 45.455 22.89 0.00 36.31 4.57
4608 5592 3.118482 AGACATGTCTTCCCTATGTGCAG 60.118 47.826 22.89 0.00 36.31 4.41
4616 5600 1.377202 CCTATGTGCAGCAACCCGT 60.377 57.895 0.00 0.00 0.00 5.28
4619 5603 0.250510 TATGTGCAGCAACCCGTTCA 60.251 50.000 0.00 0.00 0.00 3.18
4621 5605 1.106351 TGTGCAGCAACCCGTTCATT 61.106 50.000 0.00 0.00 0.00 2.57
4626 5610 0.110486 AGCAACCCGTTCATTGGACT 59.890 50.000 0.00 0.00 0.00 3.85
4629 5613 0.110486 AACCCGTTCATTGGACTGCT 59.890 50.000 0.00 0.00 0.00 4.24
4632 5616 0.606401 CCGTTCATTGGACTGCTGGT 60.606 55.000 0.00 0.00 0.00 4.00
4633 5617 1.338674 CCGTTCATTGGACTGCTGGTA 60.339 52.381 0.00 0.00 0.00 3.25
4639 5623 1.133809 TTGGACTGCTGGTAGCCCTT 61.134 55.000 0.00 0.00 41.51 3.95
4658 5642 2.642425 GAGGGATATCCGTCAGCGA 58.358 57.895 30.74 0.00 46.95 4.93
4667 5651 3.514417 CGTCAGCGAGAGGGATCA 58.486 61.111 0.00 0.00 41.33 2.92
4668 5652 1.358402 CGTCAGCGAGAGGGATCAG 59.642 63.158 0.00 0.00 41.33 2.90
4673 5692 0.324738 AGCGAGAGGGATCAGGTTGA 60.325 55.000 0.00 0.00 0.00 3.18
4699 5718 2.987125 CGGGGGAAGACGGTCATT 59.013 61.111 11.27 1.88 0.00 2.57
4712 5731 0.249398 GGTCATTGTGGTCTACGCCT 59.751 55.000 0.00 0.00 0.00 5.52
4748 5767 2.827604 CACCGGCTGTGTAACTCAG 58.172 57.895 0.00 0.00 40.26 3.35
4770 5789 2.740055 CGCAGTGGCAGTGACCTC 60.740 66.667 25.96 7.03 41.24 3.85
4782 5801 2.687566 GACCTCCGTGGGACCCAT 60.688 66.667 18.51 0.00 41.11 4.00
4810 5829 1.001406 CGGCCTCCCATGATCTACTTC 59.999 57.143 0.00 0.00 0.00 3.01
4822 5841 2.491675 TCTACTTCTCCTCGCTGTCA 57.508 50.000 0.00 0.00 0.00 3.58
4873 5892 2.697751 CAACATGGTTTCTTTCCCCACA 59.302 45.455 0.00 0.00 0.00 4.17
4878 5897 0.608130 GTTTCTTTCCCCACATGCCC 59.392 55.000 0.00 0.00 0.00 5.36
4901 5920 4.197498 ATTGCCGCCATTGCTCGC 62.197 61.111 0.00 0.00 34.43 5.03
4912 5931 4.751093 TGCTCGCGGCGGATTTGA 62.751 61.111 23.46 0.13 45.43 2.69
4918 5937 2.750888 GCGGCGGATTTGACAGGAC 61.751 63.158 9.78 0.00 0.00 3.85
4924 5943 2.009774 CGGATTTGACAGGACATGACC 58.990 52.381 6.05 6.05 0.00 4.02
4997 6023 0.622665 CAGATCCTGAGGGTTTGCCT 59.377 55.000 0.00 0.00 32.44 4.75
4998 6024 1.005215 CAGATCCTGAGGGTTTGCCTT 59.995 52.381 0.00 0.00 32.44 4.35
5010 6036 1.138859 GTTTGCCTTCAAGCCAACCTT 59.861 47.619 0.00 0.00 33.48 3.50
5020 6046 3.792712 GCCAACCTTTATCGGGCTA 57.207 52.632 0.00 0.00 41.39 3.93
5059 6085 1.748122 AGCTGCAATGCCGGAGAAG 60.748 57.895 5.05 0.00 0.00 2.85
5116 6148 1.137872 CAAGGAGATGGAGAGAACGGG 59.862 57.143 0.00 0.00 0.00 5.28
5117 6150 0.631753 AGGAGATGGAGAGAACGGGA 59.368 55.000 0.00 0.00 0.00 5.14
5122 6155 1.825474 GATGGAGAGAACGGGAGTGAA 59.175 52.381 0.00 0.00 46.69 3.18
5123 6156 1.938585 TGGAGAGAACGGGAGTGAAT 58.061 50.000 0.00 0.00 46.69 2.57
5172 6205 0.899019 TTATATAGCGGGCGGATGCA 59.101 50.000 0.00 0.00 45.35 3.96
5175 6208 1.754380 TATAGCGGGCGGATGCAAGT 61.754 55.000 0.00 0.00 45.35 3.16
5176 6209 1.754380 ATAGCGGGCGGATGCAAGTA 61.754 55.000 0.00 0.00 45.35 2.24
5177 6210 2.363711 TAGCGGGCGGATGCAAGTAG 62.364 60.000 0.00 0.00 45.35 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 102 3.936453 TCACAACACAGGTGTCTACAAAC 59.064 43.478 5.41 0.00 44.13 2.93
180 208 4.072131 GCTCTTCAACAACCACTTGGATA 58.928 43.478 1.14 0.00 38.94 2.59
195 223 3.986996 TCTCATCCATGTTGCTCTTCA 57.013 42.857 0.00 0.00 0.00 3.02
294 323 0.392060 GACCCCGGATTGCTACGTTT 60.392 55.000 0.73 0.00 0.00 3.60
410 443 2.079925 GCTCATTTCCTCACGAGCTTT 58.920 47.619 0.00 0.00 45.86 3.51
422 455 1.202313 ACTCGAGGTAGCGCTCATTTC 60.202 52.381 16.34 7.14 0.00 2.17
424 457 0.382515 GACTCGAGGTAGCGCTCATT 59.617 55.000 16.34 0.00 0.00 2.57
426 459 2.461945 CGACTCGAGGTAGCGCTCA 61.462 63.158 16.34 0.00 0.00 4.26
427 460 1.979831 AACGACTCGAGGTAGCGCTC 61.980 60.000 16.34 5.63 0.00 5.03
429 462 1.132780 GAAACGACTCGAGGTAGCGC 61.133 60.000 18.41 0.00 0.00 5.92
430 463 0.167470 TGAAACGACTCGAGGTAGCG 59.833 55.000 18.41 16.13 0.00 4.26
431 464 1.897641 CTGAAACGACTCGAGGTAGC 58.102 55.000 18.41 2.12 0.00 3.58
432 465 1.469308 AGCTGAAACGACTCGAGGTAG 59.531 52.381 18.41 9.82 0.00 3.18
433 466 1.467734 GAGCTGAAACGACTCGAGGTA 59.532 52.381 18.41 0.00 0.00 3.08
434 467 0.241481 GAGCTGAAACGACTCGAGGT 59.759 55.000 18.41 2.55 0.00 3.85
503 1336 4.365899 TTTGCTCGAGCTCGTTAATCTA 57.634 40.909 35.27 13.31 42.66 1.98
675 1509 0.391228 GGGGTGTGGCGTGAATTTTT 59.609 50.000 0.00 0.00 0.00 1.94
840 1689 3.680920 AACGGAGATCGGGGAGGCT 62.681 63.158 0.00 0.00 44.45 4.58
849 1708 0.179108 CGGGGTTCAGAACGGAGATC 60.179 60.000 7.22 0.00 0.00 2.75
860 1719 2.993264 GTCGGGACTCGGGGTTCA 60.993 66.667 0.00 0.00 39.77 3.18
1016 1876 0.466922 GGAGTTGGATGCTGGGATGG 60.467 60.000 0.00 0.00 0.00 3.51
1404 2264 5.123227 CAGGAAATCAAGAAATAGGGCGTA 58.877 41.667 0.00 0.00 0.00 4.42
1415 2275 2.355716 CCTAACGGGCAGGAAATCAAGA 60.356 50.000 0.00 0.00 34.91 3.02
1416 2276 2.017049 CCTAACGGGCAGGAAATCAAG 58.983 52.381 0.00 0.00 34.91 3.02
1428 2288 2.476821 CGTAATGGCTAACCTAACGGG 58.523 52.381 0.00 0.00 41.89 5.28
1430 2290 3.118542 GACCGTAATGGCTAACCTAACG 58.881 50.000 0.00 0.00 43.94 3.18
1452 2322 4.431131 ATCCCCAACCAGGCGCTG 62.431 66.667 7.64 3.34 35.39 5.18
1453 2323 4.115199 GATCCCCAACCAGGCGCT 62.115 66.667 7.64 0.00 35.39 5.92
1454 2324 3.936772 TTGATCCCCAACCAGGCGC 62.937 63.158 0.00 0.00 35.39 6.53
1455 2325 1.076777 ATTGATCCCCAACCAGGCG 60.077 57.895 0.00 0.00 37.63 5.52
1456 2326 1.044790 CCATTGATCCCCAACCAGGC 61.045 60.000 0.00 0.00 37.63 4.85
1457 2327 0.397535 CCCATTGATCCCCAACCAGG 60.398 60.000 0.00 0.00 37.63 4.45
1481 2351 1.227350 CCCGATCAGCATTGCTCGA 60.227 57.895 17.31 14.28 43.62 4.04
1571 2451 1.961180 GACCCTGGTCCACATCTCGG 61.961 65.000 4.93 0.00 39.08 4.63
1614 2494 1.483827 CCAGAGCATTAGAGCTGGTCA 59.516 52.381 9.78 0.00 46.75 4.02
1617 2497 3.139850 CAATCCAGAGCATTAGAGCTGG 58.860 50.000 0.00 0.00 46.75 4.85
1631 2514 8.668510 AGCTACTAACATACAAATCAATCCAG 57.331 34.615 0.00 0.00 0.00 3.86
1655 2538 2.356313 ACACGCAGCTCGGTGAAG 60.356 61.111 18.01 1.63 43.86 3.02
1679 2562 6.647334 TTCAGACCTGCATTCTCTCTATAG 57.353 41.667 0.00 0.00 0.00 1.31
1681 2564 5.011943 GGATTCAGACCTGCATTCTCTCTAT 59.988 44.000 0.00 0.00 0.00 1.98
1699 2582 0.826715 AAGCAGCGCTCTAGGATTCA 59.173 50.000 7.13 0.00 38.25 2.57
1701 2584 0.826715 TGAAGCAGCGCTCTAGGATT 59.173 50.000 7.13 0.00 38.25 3.01
1706 2589 2.426522 ACAAAATGAAGCAGCGCTCTA 58.573 42.857 7.13 0.00 38.25 2.43
1708 2591 2.056094 AACAAAATGAAGCAGCGCTC 57.944 45.000 7.13 2.24 38.25 5.03
1711 2594 3.670055 CCTACAAACAAAATGAAGCAGCG 59.330 43.478 0.00 0.00 0.00 5.18
1713 2596 6.738114 TCTTCCTACAAACAAAATGAAGCAG 58.262 36.000 0.00 0.00 0.00 4.24
1733 2618 6.633634 CGAATTGGATCGTCTACTAGTTCTTC 59.366 42.308 0.00 0.00 38.01 2.87
1752 2637 3.667960 GCACAGCTAAAGGACACGAATTG 60.668 47.826 0.00 0.00 0.00 2.32
1753 2638 2.484264 GCACAGCTAAAGGACACGAATT 59.516 45.455 0.00 0.00 0.00 2.17
1785 2670 3.055819 TCTTCCAGATAGGTGTGAAGTGC 60.056 47.826 0.00 0.00 39.02 4.40
1788 2673 4.574013 GCAATCTTCCAGATAGGTGTGAAG 59.426 45.833 0.00 0.00 32.89 3.02
1794 2679 4.429854 GAAGGCAATCTTCCAGATAGGT 57.570 45.455 0.00 0.00 44.60 3.08
1807 2692 5.713861 AGAGAACAATAAGCAAGAAGGCAAT 59.286 36.000 0.00 0.00 35.83 3.56
1823 2708 9.066892 ACACATTCAGCTATTAAAAGAGAACAA 57.933 29.630 0.00 0.00 0.00 2.83
1894 2779 7.886629 AGTGATAACTGCCATATGAACAAAT 57.113 32.000 3.65 0.00 0.00 2.32
1901 2786 6.596888 CCCTGATAAGTGATAACTGCCATATG 59.403 42.308 0.00 0.00 0.00 1.78
1915 2800 2.366916 CCTAGTCTGCCCCTGATAAGTG 59.633 54.545 0.00 0.00 0.00 3.16
1916 2801 2.683768 CCTAGTCTGCCCCTGATAAGT 58.316 52.381 0.00 0.00 0.00 2.24
1917 2802 1.974236 CCCTAGTCTGCCCCTGATAAG 59.026 57.143 0.00 0.00 0.00 1.73
1918 2803 2.040144 GCCCTAGTCTGCCCCTGATAA 61.040 57.143 0.00 0.00 0.00 1.75
1919 2804 0.471971 GCCCTAGTCTGCCCCTGATA 60.472 60.000 0.00 0.00 0.00 2.15
1920 2805 1.768077 GCCCTAGTCTGCCCCTGAT 60.768 63.158 0.00 0.00 0.00 2.90
1921 2806 2.365635 GCCCTAGTCTGCCCCTGA 60.366 66.667 0.00 0.00 0.00 3.86
1938 2823 7.815840 ACCTCCATTAAATTTTTGGTTTTGG 57.184 32.000 15.60 14.87 0.00 3.28
1962 2848 5.122519 TCCTTGCACTAAATGATTCGCATA 58.877 37.500 0.00 0.00 35.78 3.14
1966 2852 5.745294 CCAATTCCTTGCACTAAATGATTCG 59.255 40.000 0.00 0.00 0.00 3.34
2078 2964 7.118245 TGCACAAGACATATAAAGTTCTGTCAG 59.882 37.037 5.06 0.00 40.32 3.51
2241 3128 6.622962 CGCACACAAATTACAAACAACAAATC 59.377 34.615 0.00 0.00 0.00 2.17
2252 3139 2.851805 TGCAACGCACACAAATTACA 57.148 40.000 0.00 0.00 31.71 2.41
2292 3179 6.202226 ACAAGAGAATGAAAAGAAGAAACGC 58.798 36.000 0.00 0.00 0.00 4.84
2664 3551 4.964593 TGATATCACCAGGATCACATGTG 58.035 43.478 20.18 20.18 37.44 3.21
2730 3617 0.889994 CTGCAGCAAGCCCAATAACA 59.110 50.000 0.00 0.00 44.83 2.41
2793 3680 3.303857 CCTCGTCTAGTGCAACCGTATAG 60.304 52.174 0.00 0.00 37.80 1.31
2876 3763 7.329471 GGACTGCCAAAAGAAAGAAACATTATC 59.671 37.037 0.00 0.00 0.00 1.75
3052 3939 3.131396 GGGACATATGTAACCTTCAGCG 58.869 50.000 17.61 0.00 0.00 5.18
3091 3978 0.687354 ACTCCGTTGGAAGCTCACAT 59.313 50.000 0.00 0.00 0.00 3.21
3301 4188 6.013842 AGAAAATTAACCGAAGCAAGAAGG 57.986 37.500 0.00 0.00 0.00 3.46
3580 4469 5.631026 TCGCTTCTAAATGCTGAAACAATC 58.369 37.500 0.00 0.00 0.00 2.67
3584 4473 4.848299 CAGTTCGCTTCTAAATGCTGAAAC 59.152 41.667 0.00 0.00 0.00 2.78
3622 4511 7.162082 CCCACTCTTGAAACTACAGAACTAAT 58.838 38.462 0.00 0.00 0.00 1.73
3855 4802 8.021898 TCTCATGGATGTAAATATCACAGTCA 57.978 34.615 0.00 0.00 0.00 3.41
3934 4881 3.253921 CCTGAACAATGCACAAGATGACA 59.746 43.478 0.00 0.00 0.00 3.58
3936 4883 3.253921 CACCTGAACAATGCACAAGATGA 59.746 43.478 0.00 0.00 0.00 2.92
3941 4891 2.757314 TCAACACCTGAACAATGCACAA 59.243 40.909 0.00 0.00 0.00 3.33
3983 4935 2.658325 CAGAAAGCTTACAACAATGCGC 59.342 45.455 0.00 0.00 0.00 6.09
4248 5222 2.201732 TGTGAAGCAAAGACACGAGTC 58.798 47.619 4.68 4.68 45.31 3.36
4291 5267 7.013369 CCAGGGGATTAATAAAGCTGTTTCTAC 59.987 40.741 0.00 0.00 0.00 2.59
4324 5300 0.693049 AACGAGTTGGAGATGCCCTT 59.307 50.000 0.00 0.00 34.97 3.95
4339 5315 0.113776 AGTCCCCTGTCCACTAACGA 59.886 55.000 0.00 0.00 0.00 3.85
4343 5324 1.287146 GGACTAGTCCCCTGTCCACTA 59.713 57.143 28.87 0.00 46.79 2.74
4344 5325 0.041386 GGACTAGTCCCCTGTCCACT 59.959 60.000 28.87 0.00 46.79 4.00
4352 5333 4.509737 GTGCGCGGACTAGTCCCC 62.510 72.222 31.78 23.91 46.96 4.81
4369 5350 1.068474 GACCGACTTTCACATCCGTG 58.932 55.000 0.00 0.00 45.08 4.94
4374 5355 3.417069 TTGGATGACCGACTTTCACAT 57.583 42.857 0.00 0.00 39.42 3.21
4380 5361 3.845781 ATAGCATTGGATGACCGACTT 57.154 42.857 0.00 0.00 39.42 3.01
4401 5382 5.895636 AAACCGATTTGAGACATATGCAA 57.104 34.783 1.58 0.00 0.00 4.08
4407 5388 7.436970 GGTTTGTTTAAAACCGATTTGAGACAT 59.563 33.333 4.36 0.00 40.10 3.06
4408 5389 6.752815 GGTTTGTTTAAAACCGATTTGAGACA 59.247 34.615 4.36 0.00 40.10 3.41
4409 5390 7.157050 GGTTTGTTTAAAACCGATTTGAGAC 57.843 36.000 4.36 0.00 40.10 3.36
4433 5414 4.221342 CCGATTTGCATGTAATTCATCCG 58.779 43.478 15.59 5.26 34.09 4.18
4456 5437 9.197694 CATGTAATTCATCCGGTTTGTTTAAAA 57.802 29.630 0.00 0.00 34.09 1.52
4457 5438 7.329717 GCATGTAATTCATCCGGTTTGTTTAAA 59.670 33.333 0.00 0.71 34.09 1.52
4458 5439 6.809196 GCATGTAATTCATCCGGTTTGTTTAA 59.191 34.615 0.00 0.00 34.09 1.52
4459 5440 6.071896 TGCATGTAATTCATCCGGTTTGTTTA 60.072 34.615 0.00 2.04 34.09 2.01
4460 5441 5.167845 GCATGTAATTCATCCGGTTTGTTT 58.832 37.500 0.00 2.93 34.09 2.83
4461 5442 4.219507 TGCATGTAATTCATCCGGTTTGTT 59.780 37.500 0.00 0.00 34.09 2.83
4462 5443 3.761218 TGCATGTAATTCATCCGGTTTGT 59.239 39.130 0.00 0.00 34.09 2.83
4470 5451 4.351192 GTCCGGTTTGCATGTAATTCATC 58.649 43.478 0.00 0.00 34.09 2.92
4471 5452 3.181501 CGTCCGGTTTGCATGTAATTCAT 60.182 43.478 0.00 0.00 37.22 2.57
4475 5456 2.102070 TCGTCCGGTTTGCATGTAAT 57.898 45.000 0.00 0.00 0.00 1.89
4478 5459 1.025812 TTTTCGTCCGGTTTGCATGT 58.974 45.000 0.00 0.00 0.00 3.21
4482 5463 2.128367 AATGTTTTCGTCCGGTTTGC 57.872 45.000 0.00 0.00 0.00 3.68
4535 5518 4.925646 CGTAGACTAGTTTTACCACAACCC 59.074 45.833 0.00 0.00 0.00 4.11
4536 5519 5.772521 TCGTAGACTAGTTTTACCACAACC 58.227 41.667 0.00 0.00 0.00 3.77
4540 5523 5.742926 GCTGATCGTAGACTAGTTTTACCAC 59.257 44.000 0.00 0.00 42.51 4.16
4557 5541 4.592192 ATCCACCGCGGCTGATCG 62.592 66.667 28.58 10.20 33.14 3.69
4560 5544 3.371097 GAAGATCCACCGCGGCTGA 62.371 63.158 28.58 22.64 33.14 4.26
4562 5546 3.390521 TGAAGATCCACCGCGGCT 61.391 61.111 28.58 11.31 33.14 5.52
4563 5547 3.195698 GTGAAGATCCACCGCGGC 61.196 66.667 28.58 8.62 33.14 6.53
4586 5570 2.840038 TGCACATAGGGAAGACATGTCT 59.160 45.455 22.89 22.89 42.75 3.41
4605 5589 1.080569 CCAATGAACGGGTTGCTGC 60.081 57.895 0.00 0.00 0.00 5.25
4607 5591 0.110486 AGTCCAATGAACGGGTTGCT 59.890 50.000 0.00 0.00 0.00 3.91
4608 5592 0.240945 CAGTCCAATGAACGGGTTGC 59.759 55.000 0.00 0.00 0.00 4.17
4616 5600 1.340017 GGCTACCAGCAGTCCAATGAA 60.340 52.381 0.00 0.00 44.75 2.57
4619 5603 0.916358 AGGGCTACCAGCAGTCCAAT 60.916 55.000 0.00 0.00 43.19 3.16
4621 5605 1.538876 AAGGGCTACCAGCAGTCCA 60.539 57.895 0.00 0.00 43.19 4.02
4626 5610 3.403624 CCTCAAGGGCTACCAGCA 58.596 61.111 0.00 0.00 44.75 4.41
4639 5623 0.179001 TCGCTGACGGATATCCCTCA 60.179 55.000 18.82 18.82 40.63 3.86
4649 5633 2.069465 CTGATCCCTCTCGCTGACGG 62.069 65.000 0.00 0.00 40.63 4.79
4651 5635 1.040339 ACCTGATCCCTCTCGCTGAC 61.040 60.000 0.00 0.00 0.00 3.51
4656 5640 3.550437 AAATCAACCTGATCCCTCTCG 57.450 47.619 0.00 0.00 35.76 4.04
4658 5642 4.347607 CCAAAAATCAACCTGATCCCTCT 58.652 43.478 0.00 0.00 35.76 3.69
4664 5648 1.550072 CCGCCCAAAAATCAACCTGAT 59.450 47.619 0.00 0.00 39.09 2.90
4665 5649 0.965439 CCGCCCAAAAATCAACCTGA 59.035 50.000 0.00 0.00 0.00 3.86
4666 5650 0.037419 CCCGCCCAAAAATCAACCTG 60.037 55.000 0.00 0.00 0.00 4.00
4667 5651 1.191489 CCCCGCCCAAAAATCAACCT 61.191 55.000 0.00 0.00 0.00 3.50
4668 5652 1.295101 CCCCGCCCAAAAATCAACC 59.705 57.895 0.00 0.00 0.00 3.77
4673 5692 0.902984 GTCTTCCCCCGCCCAAAAAT 60.903 55.000 0.00 0.00 0.00 1.82
4697 5716 1.255667 ACGGAGGCGTAGACCACAAT 61.256 55.000 0.00 0.00 31.70 2.71
4699 5718 1.870055 GAACGGAGGCGTAGACCACA 61.870 60.000 0.00 0.00 31.70 4.17
4716 5735 2.112297 GGTGTCTTGCCCGGTGAA 59.888 61.111 0.00 0.00 0.00 3.18
4762 5781 2.603776 GGTCCCACGGAGGTCACT 60.604 66.667 0.00 0.00 34.66 3.41
4766 5785 3.009115 CATGGGTCCCACGGAGGT 61.009 66.667 14.57 0.00 35.80 3.85
4848 5867 1.611491 GGAAAGAAACCATGTTGGCGA 59.389 47.619 0.00 0.00 42.67 5.54
4853 5872 3.039252 TGTGGGGAAAGAAACCATGTT 57.961 42.857 0.00 0.00 36.54 2.71
4860 5879 0.897863 CGGGCATGTGGGGAAAGAAA 60.898 55.000 0.00 0.00 0.00 2.52
4878 5897 4.178214 AATGGCGGCAATGCGTCG 62.178 61.111 18.31 0.00 35.06 5.12
4901 5920 0.744414 ATGTCCTGTCAAATCCGCCG 60.744 55.000 0.00 0.00 0.00 6.46
4933 5952 4.154347 CCTCCTCGCCAGTCCAGC 62.154 72.222 0.00 0.00 0.00 4.85
4985 6011 0.827507 GGCTTGAAGGCAAACCCTCA 60.828 55.000 14.34 0.00 45.62 3.86
4997 6023 2.442413 CCCGATAAAGGTTGGCTTGAA 58.558 47.619 0.00 0.00 0.00 2.69
4998 6024 1.953311 GCCCGATAAAGGTTGGCTTGA 60.953 52.381 0.00 0.00 39.05 3.02
5059 6085 1.574702 CCTCCGGCGAACAAAAGGAC 61.575 60.000 9.30 0.00 0.00 3.85
5084 6113 1.416243 TCTCCTTGTACAACACCCGT 58.584 50.000 3.59 0.00 0.00 5.28
5116 6148 3.364366 CGAGCAAGAACCACAATTCACTC 60.364 47.826 0.00 0.00 0.00 3.51
5117 6150 2.549754 CGAGCAAGAACCACAATTCACT 59.450 45.455 0.00 0.00 0.00 3.41
5122 6155 1.148310 CGTCGAGCAAGAACCACAAT 58.852 50.000 0.00 0.00 0.00 2.71
5123 6156 2.600388 CGTCGAGCAAGAACCACAA 58.400 52.632 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.