Multiple sequence alignment - TraesCS2D01G361600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G361600 chr2D 100.000 4169 0 0 1 4169 466726663 466722495 0.000000e+00 7699.0
1 TraesCS2D01G361600 chr2A 89.091 2035 118 52 1 1986 607844596 607842617 0.000000e+00 2433.0
2 TraesCS2D01G361600 chr2A 90.730 1672 69 51 1985 3622 607842535 607840916 0.000000e+00 2150.0
3 TraesCS2D01G361600 chr2A 90.295 237 15 3 3817 4053 607840906 607840678 1.880000e-78 303.0
4 TraesCS2D01G361600 chr2A 96.407 167 6 0 3648 3814 93326849 93326683 4.110000e-70 276.0
5 TraesCS2D01G361600 chr2A 92.800 125 4 2 4045 4169 607838229 607838110 4.280000e-40 176.0
6 TraesCS2D01G361600 chr2B 89.238 1654 87 46 1978 3617 545366701 545365125 0.000000e+00 1984.0
7 TraesCS2D01G361600 chr2B 86.959 1825 132 51 44 1832 545368606 545366852 0.000000e+00 1954.0
8 TraesCS2D01G361600 chr2B 85.994 357 30 6 3813 4169 545365121 545364785 8.520000e-97 364.0
9 TraesCS2D01G361600 chr7D 98.171 164 3 0 3648 3811 472731927 472732090 1.900000e-73 287.0
10 TraesCS2D01G361600 chr7D 96.450 169 6 0 3648 3816 106775696 106775528 3.170000e-71 279.0
11 TraesCS2D01G361600 chr7D 94.872 39 2 0 395 433 619009318 619009280 1.250000e-05 62.1
12 TraesCS2D01G361600 chr4D 98.182 165 2 1 3648 3812 10410979 10410816 1.900000e-73 287.0
13 TraesCS2D01G361600 chr4D 96.364 165 6 0 3647 3811 504434842 504434678 5.310000e-69 272.0
14 TraesCS2D01G361600 chr4D 90.625 96 7 2 2677 2771 497126484 497126578 4.380000e-25 126.0
15 TraesCS2D01G361600 chr4D 90.789 76 5 2 2675 2749 506606766 506606692 2.650000e-17 100.0
16 TraesCS2D01G361600 chr6D 96.951 164 5 0 3648 3811 47814058 47813895 4.110000e-70 276.0
17 TraesCS2D01G361600 chr6D 88.961 154 12 3 2677 2826 292737751 292737599 7.120000e-43 185.0
18 TraesCS2D01G361600 chr5A 96.970 165 4 1 3647 3811 453449442 453449605 4.110000e-70 276.0
19 TraesCS2D01G361600 chr5A 90.625 96 7 2 2677 2771 676887309 676887403 4.380000e-25 126.0
20 TraesCS2D01G361600 chr1D 96.429 168 5 1 3648 3815 289565108 289565274 4.110000e-70 276.0
21 TraesCS2D01G361600 chr5D 96.914 162 4 1 3646 3807 543862412 543862252 1.910000e-68 270.0
22 TraesCS2D01G361600 chr6A 79.104 402 63 17 2430 2820 428426243 428426634 1.490000e-64 257.0
23 TraesCS2D01G361600 chr6B 88.312 154 13 3 2677 2826 457216778 457216626 3.310000e-41 180.0
24 TraesCS2D01G361600 chr4B 90.625 96 7 2 2677 2771 637622199 637622293 4.380000e-25 126.0
25 TraesCS2D01G361600 chrUn 90.000 60 6 0 374 433 323821205 323821264 1.240000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G361600 chr2D 466722495 466726663 4168 True 7699.0 7699 100.000 1 4169 1 chr2D.!!$R1 4168
1 TraesCS2D01G361600 chr2A 607838110 607844596 6486 True 1265.5 2433 90.729 1 4169 4 chr2A.!!$R2 4168
2 TraesCS2D01G361600 chr2B 545364785 545368606 3821 True 1434.0 1984 87.397 44 4169 3 chr2B.!!$R1 4125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 714 0.251564 ATCGATCGATCCTCTGCCCT 60.252 55.0 24.6 0.0 0.0 5.19 F
1444 1482 0.460311 AGGATCTTCAAGTACCGGCG 59.540 55.0 0.0 0.0 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1909 1982 0.104855 TGGATGCACATAGAGACGGC 59.895 55.0 0.0 0.0 0.0 5.68 R
3175 3461 0.179054 GAGGGCTAACGGTGGGAATC 60.179 60.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.189119 TCTAAAAGGGCTGATTACAATTTTGT 57.811 30.769 1.08 1.08 44.86 2.83
74 75 2.099756 GGCCATGCAGTTTATGGTCTTC 59.900 50.000 0.00 0.00 44.85 2.87
75 76 2.754552 GCCATGCAGTTTATGGTCTTCA 59.245 45.455 5.23 0.00 45.48 3.02
81 82 7.067372 CCATGCAGTTTATGGTCTTCAGAAATA 59.933 37.037 0.00 0.00 38.59 1.40
115 116 8.908786 TCAGTTCACTCTGTAGAATTTCATTT 57.091 30.769 0.00 0.00 36.85 2.32
155 157 4.072131 CCAAAAGAAGATTCCTCGGTTCA 58.928 43.478 0.00 0.00 0.00 3.18
165 168 8.525290 AAGATTCCTCGGTTCATGAAATAAAT 57.475 30.769 10.35 4.82 0.00 1.40
168 171 8.931385 ATTCCTCGGTTCATGAAATAAATTTG 57.069 30.769 10.35 0.00 0.00 2.32
187 190 1.358787 TGTGAGGGCCTCATGGAATTT 59.641 47.619 36.94 0.00 42.73 1.82
191 194 2.952310 GAGGGCCTCATGGAATTTGTAC 59.048 50.000 28.55 0.00 34.57 2.90
225 230 0.308376 TTAACGCGCAAAGTTCACCC 59.692 50.000 5.73 0.00 33.42 4.61
229 234 1.896660 GCGCAAAGTTCACCCCTCA 60.897 57.895 0.30 0.00 0.00 3.86
231 236 0.523072 CGCAAAGTTCACCCCTCATG 59.477 55.000 0.00 0.00 0.00 3.07
254 260 5.642063 TGAAAATTCATGGGAGTACTCGTTC 59.358 40.000 16.56 9.25 31.01 3.95
272 278 3.845775 CGTTCGTATCAAACATTTGCAGG 59.154 43.478 0.00 0.00 38.05 4.85
277 283 4.730042 CGTATCAAACATTTGCAGGATTCG 59.270 41.667 0.00 0.00 38.05 3.34
289 295 4.717991 TGCAGGATTCGAACAAAATAACG 58.282 39.130 0.00 0.00 0.00 3.18
317 324 6.853279 AACATAATTTGCAGTTTCGATTCG 57.147 33.333 0.00 0.00 0.00 3.34
320 327 3.559238 ATTTGCAGTTTCGATTCGCTT 57.441 38.095 0.00 0.00 0.00 4.68
334 341 4.327357 CGATTCGCTTCAGTGATTGTAGTT 59.673 41.667 0.00 0.00 34.19 2.24
336 343 2.736721 TCGCTTCAGTGATTGTAGTTGC 59.263 45.455 0.00 0.00 0.00 4.17
343 350 4.021104 TCAGTGATTGTAGTTGCTGCTAGT 60.021 41.667 0.00 0.00 0.00 2.57
351 358 3.601443 AGTTGCTGCTAGTTGGTCTAG 57.399 47.619 0.00 0.00 46.39 2.43
352 359 2.900546 AGTTGCTGCTAGTTGGTCTAGT 59.099 45.455 0.00 0.00 45.65 2.57
353 360 2.996621 GTTGCTGCTAGTTGGTCTAGTG 59.003 50.000 0.00 0.36 45.65 2.74
356 363 3.323691 TGCTGCTAGTTGGTCTAGTGAAA 59.676 43.478 0.00 0.00 45.65 2.69
362 369 7.847096 TGCTAGTTGGTCTAGTGAAATGAATA 58.153 34.615 0.00 0.00 45.65 1.75
363 370 8.486210 TGCTAGTTGGTCTAGTGAAATGAATAT 58.514 33.333 0.00 0.00 45.65 1.28
364 371 9.331282 GCTAGTTGGTCTAGTGAAATGAATATT 57.669 33.333 0.00 0.00 45.65 1.28
368 375 9.788960 GTTGGTCTAGTGAAATGAATATTTTCC 57.211 33.333 0.00 0.00 36.66 3.13
369 376 9.527157 TTGGTCTAGTGAAATGAATATTTTCCA 57.473 29.630 0.00 0.00 36.66 3.53
425 432 9.512588 AATCCCATGACAGTTGATAAATAGATC 57.487 33.333 0.00 0.00 0.00 2.75
426 433 8.033178 TCCCATGACAGTTGATAAATAGATCA 57.967 34.615 0.00 0.00 33.96 2.92
427 434 8.152898 TCCCATGACAGTTGATAAATAGATCAG 58.847 37.037 0.00 0.00 37.16 2.90
559 576 7.824289 TCTTAAAAGAGTGAGAGAGAGAGAGAG 59.176 40.741 0.00 0.00 0.00 3.20
560 577 5.762179 AAAGAGTGAGAGAGAGAGAGAGA 57.238 43.478 0.00 0.00 0.00 3.10
561 578 5.350504 AAGAGTGAGAGAGAGAGAGAGAG 57.649 47.826 0.00 0.00 0.00 3.20
562 579 4.614475 AGAGTGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
563 580 4.648762 AGAGTGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
564 581 4.614475 AGTGAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
565 582 4.648762 AGTGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
566 583 4.646945 GTGAGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
567 584 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
568 585 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
569 586 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
570 587 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
586 603 7.235399 AGAGAGAGAGACAGAAGAAAAGGAAAT 59.765 37.037 0.00 0.00 0.00 2.17
587 604 7.744733 AGAGAGAGACAGAAGAAAAGGAAATT 58.255 34.615 0.00 0.00 0.00 1.82
691 714 0.251564 ATCGATCGATCCTCTGCCCT 60.252 55.000 24.60 0.00 0.00 5.19
692 715 1.175347 TCGATCGATCCTCTGCCCTG 61.175 60.000 19.51 2.52 0.00 4.45
693 716 1.005156 GATCGATCCTCTGCCCTGC 60.005 63.158 14.76 0.00 0.00 4.85
694 717 2.447586 GATCGATCCTCTGCCCTGCC 62.448 65.000 14.76 0.00 0.00 4.85
695 718 4.247380 CGATCCTCTGCCCTGCCC 62.247 72.222 0.00 0.00 0.00 5.36
986 1015 3.926003 TCGCTAGCTGAGGGAGTG 58.074 61.111 13.93 0.00 41.94 3.51
987 1016 2.105930 CGCTAGCTGAGGGAGTGC 59.894 66.667 13.93 0.00 40.59 4.40
988 1017 2.503546 GCTAGCTGAGGGAGTGCC 59.496 66.667 7.70 0.00 0.00 5.01
1174 1203 2.225467 GTACGGCCCGTATCTAGAGTT 58.775 52.381 20.41 0.00 44.12 3.01
1211 1244 2.961526 TAACTCGAGGTTCCTGCATC 57.038 50.000 18.41 0.00 39.17 3.91
1223 1256 4.333926 GGTTCCTGCATCAACAGATTACTC 59.666 45.833 9.47 0.00 40.25 2.59
1227 1260 5.053145 CCTGCATCAACAGATTACTCCTAC 58.947 45.833 0.00 0.00 40.25 3.18
1228 1261 5.023533 TGCATCAACAGATTACTCCTACC 57.976 43.478 0.00 0.00 0.00 3.18
1233 1266 6.770746 TCAACAGATTACTCCTACCACTAC 57.229 41.667 0.00 0.00 0.00 2.73
1234 1267 6.250711 TCAACAGATTACTCCTACCACTACA 58.749 40.000 0.00 0.00 0.00 2.74
1352 1385 1.546998 CCTTTTCCAACTAACCCGGCT 60.547 52.381 0.00 0.00 0.00 5.52
1388 1423 3.761657 GCAAGTTGCGAATGATTGATCA 58.238 40.909 12.95 0.00 35.78 2.92
1444 1482 0.460311 AGGATCTTCAAGTACCGGCG 59.540 55.000 0.00 0.00 0.00 6.46
1500 1549 2.651455 TGATTCGATCCTGTACGGTCT 58.349 47.619 0.00 0.00 0.00 3.85
1604 1664 1.871080 AGTCAGTGCGTTCCTTTGAG 58.129 50.000 0.00 0.00 0.00 3.02
1605 1665 1.412710 AGTCAGTGCGTTCCTTTGAGA 59.587 47.619 0.00 0.00 0.00 3.27
1606 1666 2.037772 AGTCAGTGCGTTCCTTTGAGAT 59.962 45.455 0.00 0.00 0.00 2.75
1607 1667 2.808543 GTCAGTGCGTTCCTTTGAGATT 59.191 45.455 0.00 0.00 0.00 2.40
1608 1668 3.251004 GTCAGTGCGTTCCTTTGAGATTT 59.749 43.478 0.00 0.00 0.00 2.17
1609 1669 3.498397 TCAGTGCGTTCCTTTGAGATTTC 59.502 43.478 0.00 0.00 0.00 2.17
1749 1816 1.241990 TTCCTGAGCGAGCTACGTGT 61.242 55.000 0.00 0.00 44.60 4.49
1857 1925 8.573035 ACGTGTTTGTTGAGGTGAAAAATATAT 58.427 29.630 0.00 0.00 0.00 0.86
1896 1969 2.713167 AGTGTAGCATGGCCTAATGGAT 59.287 45.455 3.32 0.00 34.57 3.41
1909 1982 5.352284 GCCTAATGGATGGACTATACATCG 58.648 45.833 0.00 0.00 39.51 3.84
1911 1984 3.895232 ATGGATGGACTATACATCGCC 57.105 47.619 0.00 0.00 44.34 5.54
1912 1985 1.544246 TGGATGGACTATACATCGCCG 59.456 52.381 0.00 0.00 44.34 6.46
1913 1986 1.544691 GGATGGACTATACATCGCCGT 59.455 52.381 0.00 0.00 44.34 5.68
1914 1987 2.415625 GGATGGACTATACATCGCCGTC 60.416 54.545 0.00 0.00 44.34 4.79
1980 2131 5.048991 AGTGTTGGACGAATAATCACCAAAC 60.049 40.000 7.67 8.37 40.66 2.93
2119 2365 1.062587 GCCGACATCAACTATGCACAC 59.937 52.381 0.00 0.00 39.39 3.82
2135 2381 1.035932 ACACCACTAGCGGCGTATCT 61.036 55.000 9.37 0.00 0.00 1.98
2148 2394 1.671261 GCGTATCTAGCATCCAGGCAG 60.671 57.143 0.00 0.00 35.83 4.85
2169 2415 1.830477 GCATTGGGGTTAATCCAAGCA 59.170 47.619 7.18 0.00 46.05 3.91
2170 2416 2.418609 GCATTGGGGTTAATCCAAGCAC 60.419 50.000 7.18 1.83 46.05 4.40
2171 2417 1.540267 TTGGGGTTAATCCAAGCACG 58.460 50.000 7.18 0.00 41.13 5.34
2172 2418 0.402504 TGGGGTTAATCCAAGCACGT 59.597 50.000 7.18 0.00 41.13 4.49
2173 2419 1.629353 TGGGGTTAATCCAAGCACGTA 59.371 47.619 7.18 0.00 41.13 3.57
2211 2457 6.851836 TGAAATATATCTTTCTCTCCCTGGGT 59.148 38.462 13.56 0.00 36.34 4.51
2213 2459 8.814448 AAATATATCTTTCTCTCCCTGGGTTA 57.186 34.615 13.56 0.88 0.00 2.85
2222 2468 2.572104 TCTCCCTGGGTTAGAGCTTTTC 59.428 50.000 13.56 0.00 0.00 2.29
2397 2657 2.124901 TAATCACTTGGCCCGCCG 60.125 61.111 0.00 0.00 39.42 6.46
2573 2834 3.301274 CTTGTGGGGGAACAGGTAAAAA 58.699 45.455 0.00 0.00 0.00 1.94
2574 2835 3.621682 TGTGGGGGAACAGGTAAAAAT 57.378 42.857 0.00 0.00 0.00 1.82
2575 2836 4.743705 TGTGGGGGAACAGGTAAAAATA 57.256 40.909 0.00 0.00 0.00 1.40
2576 2837 5.278127 TGTGGGGGAACAGGTAAAAATAT 57.722 39.130 0.00 0.00 0.00 1.28
2577 2838 6.404426 TGTGGGGGAACAGGTAAAAATATA 57.596 37.500 0.00 0.00 0.00 0.86
2578 2839 6.189133 TGTGGGGGAACAGGTAAAAATATAC 58.811 40.000 0.00 0.00 0.00 1.47
2579 2840 6.011451 TGTGGGGGAACAGGTAAAAATATACT 60.011 38.462 0.00 0.00 0.00 2.12
2581 2842 8.054572 GTGGGGGAACAGGTAAAAATATACTTA 58.945 37.037 0.00 0.00 0.00 2.24
2582 2843 8.054572 TGGGGGAACAGGTAAAAATATACTTAC 58.945 37.037 0.27 0.27 0.00 2.34
2584 2845 9.117183 GGGGAACAGGTAAAAATATACTTACTG 57.883 37.037 6.76 0.00 0.00 2.74
2586 2847 9.169592 GGAACAGGTAAAAATATACTTACTGCA 57.830 33.333 0.00 0.00 0.00 4.41
2588 2849 9.953565 AACAGGTAAAAATATACTTACTGCAGA 57.046 29.630 23.35 0.48 0.00 4.26
2598 2859 9.703892 AATATACTTACTGCAGATGATCAAGTC 57.296 33.333 23.35 0.00 0.00 3.01
2599 2860 4.764172 ACTTACTGCAGATGATCAAGTCC 58.236 43.478 23.35 0.00 0.00 3.85
2600 2861 2.706339 ACTGCAGATGATCAAGTCCC 57.294 50.000 23.35 0.00 0.00 4.46
2601 2862 1.211457 ACTGCAGATGATCAAGTCCCC 59.789 52.381 23.35 0.00 0.00 4.81
2602 2863 0.548031 TGCAGATGATCAAGTCCCCC 59.452 55.000 0.00 0.00 0.00 5.40
2619 2880 1.212935 CCCCCTACCCTATATGCATGC 59.787 57.143 11.82 11.82 0.00 4.06
2620 2881 1.915489 CCCCTACCCTATATGCATGCA 59.085 52.381 25.04 25.04 0.00 3.96
2621 2882 2.092753 CCCCTACCCTATATGCATGCAG 60.093 54.545 26.69 13.49 0.00 4.41
2622 2883 2.840038 CCCTACCCTATATGCATGCAGA 59.160 50.000 26.69 22.88 0.00 4.26
2623 2884 3.457380 CCCTACCCTATATGCATGCAGAT 59.543 47.826 28.94 28.94 0.00 2.90
2636 2897 3.156157 GCAGATTGCAGACTGAGCT 57.844 52.632 20.92 0.00 44.26 4.09
2637 2898 2.306341 GCAGATTGCAGACTGAGCTA 57.694 50.000 20.92 0.00 44.26 3.32
2638 2899 2.625737 GCAGATTGCAGACTGAGCTAA 58.374 47.619 20.92 0.00 44.26 3.09
2639 2900 3.005554 GCAGATTGCAGACTGAGCTAAA 58.994 45.455 20.92 0.00 44.26 1.85
2640 2901 3.626670 GCAGATTGCAGACTGAGCTAAAT 59.373 43.478 20.92 0.00 44.26 1.40
2642 2903 5.277250 GCAGATTGCAGACTGAGCTAAATAC 60.277 44.000 20.92 2.26 44.26 1.89
2643 2904 5.236047 CAGATTGCAGACTGAGCTAAATACC 59.764 44.000 6.65 0.00 36.38 2.73
2644 2905 3.165058 TGCAGACTGAGCTAAATACCG 57.835 47.619 6.65 0.00 0.00 4.02
2645 2906 2.159099 TGCAGACTGAGCTAAATACCGG 60.159 50.000 6.65 0.00 0.00 5.28
2646 2907 2.159085 GCAGACTGAGCTAAATACCGGT 60.159 50.000 13.98 13.98 0.00 5.28
2647 2908 3.448686 CAGACTGAGCTAAATACCGGTG 58.551 50.000 19.93 0.00 0.00 4.94
2648 2909 3.097614 AGACTGAGCTAAATACCGGTGT 58.902 45.455 19.93 8.05 0.00 4.16
2658 2934 6.152154 AGCTAAATACCGGTGTGCTAAAATTT 59.848 34.615 19.93 14.57 0.00 1.82
2664 2940 4.023536 ACCGGTGTGCTAAAATTTAGTGTG 60.024 41.667 6.12 0.35 0.00 3.82
2667 2944 3.360758 GTGTGCTAAAATTTAGTGTGCGC 59.639 43.478 13.56 0.00 0.00 6.09
2694 2971 2.126071 AGGTGGTCGACGATTGCG 60.126 61.111 9.92 0.00 44.79 4.85
3072 3358 1.722677 CTCCACGAGCGAGGAGTAC 59.277 63.158 22.65 0.00 44.41 2.73
3075 3361 3.507009 ACGAGCGAGGAGTACGGC 61.507 66.667 0.00 0.00 0.00 5.68
3549 3838 8.533657 TGGGTATTACGTCGGATTATGATAATT 58.466 33.333 0.00 0.00 0.00 1.40
3622 3911 4.846779 TTTTTAACACATGGCAGGACTC 57.153 40.909 5.99 0.00 0.00 3.36
3623 3912 3.500448 TTTAACACATGGCAGGACTCA 57.500 42.857 5.99 0.00 0.00 3.41
3624 3913 2.768253 TAACACATGGCAGGACTCAG 57.232 50.000 5.99 0.00 0.00 3.35
3625 3914 0.037303 AACACATGGCAGGACTCAGG 59.963 55.000 5.99 0.00 0.00 3.86
3626 3915 0.837691 ACACATGGCAGGACTCAGGA 60.838 55.000 5.99 0.00 0.00 3.86
3627 3916 0.392193 CACATGGCAGGACTCAGGAC 60.392 60.000 5.99 0.00 0.00 3.85
3631 3920 0.704664 TGGCAGGACTCAGGACTAGA 59.295 55.000 0.00 0.00 0.00 2.43
3632 3921 1.107945 GGCAGGACTCAGGACTAGAC 58.892 60.000 0.00 0.00 0.00 2.59
3633 3922 1.341581 GGCAGGACTCAGGACTAGACT 60.342 57.143 0.00 0.00 0.00 3.24
3634 3923 2.092321 GGCAGGACTCAGGACTAGACTA 60.092 54.545 0.00 0.00 0.00 2.59
3635 3924 3.211045 GCAGGACTCAGGACTAGACTAG 58.789 54.545 8.00 8.00 0.00 2.57
3636 3925 3.211045 CAGGACTCAGGACTAGACTAGC 58.789 54.545 9.52 2.76 0.00 3.42
3637 3926 2.173996 AGGACTCAGGACTAGACTAGCC 59.826 54.545 9.52 11.29 0.00 3.93
3638 3927 2.173996 GGACTCAGGACTAGACTAGCCT 59.826 54.545 15.68 15.68 34.21 4.58
3639 3928 3.391955 GGACTCAGGACTAGACTAGCCTA 59.608 52.174 19.08 10.78 33.15 3.93
3640 3929 4.042435 GGACTCAGGACTAGACTAGCCTAT 59.958 50.000 19.08 11.45 33.15 2.57
3641 3930 5.457052 GGACTCAGGACTAGACTAGCCTATT 60.457 48.000 19.08 10.38 33.15 1.73
3642 3931 5.381757 ACTCAGGACTAGACTAGCCTATTG 58.618 45.833 19.08 15.15 33.15 1.90
3643 3932 4.730966 TCAGGACTAGACTAGCCTATTGG 58.269 47.826 19.08 10.99 33.15 3.16
3644 3933 4.168283 TCAGGACTAGACTAGCCTATTGGT 59.832 45.833 19.08 0.00 33.15 3.67
3645 3934 4.279671 CAGGACTAGACTAGCCTATTGGTG 59.720 50.000 19.08 8.31 33.15 4.17
3646 3935 3.574826 GGACTAGACTAGCCTATTGGTGG 59.425 52.174 9.52 0.00 35.27 4.61
3661 3950 8.647143 CCTATTGGTGGCAATGTTTTAAATAG 57.353 34.615 0.00 0.00 0.00 1.73
3662 3951 6.983474 ATTGGTGGCAATGTTTTAAATAGC 57.017 33.333 0.00 0.00 0.00 2.97
3663 3952 4.826556 TGGTGGCAATGTTTTAAATAGCC 58.173 39.130 0.00 0.00 40.93 3.93
3664 3953 3.862845 GGTGGCAATGTTTTAAATAGCCG 59.137 43.478 0.00 0.00 43.35 5.52
3665 3954 3.862845 GTGGCAATGTTTTAAATAGCCGG 59.137 43.478 0.00 0.00 43.35 6.13
3666 3955 2.863740 GGCAATGTTTTAAATAGCCGGC 59.136 45.455 21.89 21.89 0.00 6.13
3667 3956 3.430236 GGCAATGTTTTAAATAGCCGGCT 60.430 43.478 34.85 34.85 0.00 5.52
3668 3957 4.202070 GGCAATGTTTTAAATAGCCGGCTA 60.202 41.667 36.88 36.88 0.00 3.93
3669 3958 5.508994 GGCAATGTTTTAAATAGCCGGCTAT 60.509 40.000 37.79 37.79 40.63 2.97
3670 3959 6.294286 GGCAATGTTTTAAATAGCCGGCTATA 60.294 38.462 41.53 28.18 38.20 1.31
3671 3960 6.801862 GCAATGTTTTAAATAGCCGGCTATAG 59.198 38.462 41.53 23.03 38.20 1.31
3672 3961 5.934935 TGTTTTAAATAGCCGGCTATAGC 57.065 39.130 41.53 29.25 38.20 2.97
3673 3962 5.617252 TGTTTTAAATAGCCGGCTATAGCT 58.383 37.500 41.53 30.77 43.20 3.32
3674 3963 5.699458 TGTTTTAAATAGCCGGCTATAGCTC 59.301 40.000 41.53 28.73 40.56 4.09
3675 3964 4.467198 TTAAATAGCCGGCTATAGCTCC 57.533 45.455 41.53 12.16 40.56 4.70
3676 3965 0.818296 AATAGCCGGCTATAGCTCCG 59.182 55.000 41.53 18.50 44.89 4.63
3677 3966 1.668101 ATAGCCGGCTATAGCTCCGC 61.668 60.000 41.03 20.23 44.01 5.54
3678 3967 2.766306 TAGCCGGCTATAGCTCCGCT 62.766 60.000 32.24 25.87 44.01 5.52
3679 3968 2.341101 GCCGGCTATAGCTCCGCTA 61.341 63.158 22.15 0.00 45.55 4.26
3686 3975 3.998156 TAGCTCCGCTATAGCCCG 58.002 61.111 19.00 9.44 41.02 6.13
3687 3976 2.341101 TAGCTCCGCTATAGCCCGC 61.341 63.158 19.00 17.12 41.02 6.13
3688 3977 2.766306 TAGCTCCGCTATAGCCCGCT 62.766 60.000 24.41 24.41 41.02 5.52
3689 3978 2.341101 GCTCCGCTATAGCCCGCTA 61.341 63.158 19.00 0.00 37.91 4.26
3690 3979 1.668101 GCTCCGCTATAGCCCGCTAT 61.668 60.000 19.00 13.46 41.58 2.97
3691 3980 1.676746 CTCCGCTATAGCCCGCTATA 58.323 55.000 19.00 14.20 39.65 1.31
3692 3981 2.231529 CTCCGCTATAGCCCGCTATAT 58.768 52.381 19.00 0.00 39.77 0.86
3693 3982 3.409570 CTCCGCTATAGCCCGCTATATA 58.590 50.000 19.00 0.00 39.77 0.86
3694 3983 3.409570 TCCGCTATAGCCCGCTATATAG 58.590 50.000 19.00 5.30 39.77 1.31
3696 3985 3.579335 GCTATAGCCCGCTATATAGCC 57.421 52.381 25.48 13.82 45.81 3.93
3697 3986 3.158676 GCTATAGCCCGCTATATAGCCT 58.841 50.000 25.48 19.31 45.81 4.58
3698 3987 3.574826 GCTATAGCCCGCTATATAGCCTT 59.425 47.826 25.48 12.81 45.81 4.35
3699 3988 4.039366 GCTATAGCCCGCTATATAGCCTTT 59.961 45.833 25.48 15.29 45.81 3.11
3700 3989 5.453480 GCTATAGCCCGCTATATAGCCTTTT 60.453 44.000 25.48 13.42 45.81 2.27
3701 3990 3.336138 AGCCCGCTATATAGCCTTTTC 57.664 47.619 25.48 12.31 46.34 2.29
3702 3991 2.637872 AGCCCGCTATATAGCCTTTTCA 59.362 45.455 25.48 0.00 46.34 2.69
3703 3992 3.003480 GCCCGCTATATAGCCTTTTCAG 58.997 50.000 25.48 11.73 46.34 3.02
3704 3993 3.003480 CCCGCTATATAGCCTTTTCAGC 58.997 50.000 25.48 3.90 46.34 4.26
3705 3994 3.557054 CCCGCTATATAGCCTTTTCAGCA 60.557 47.826 25.48 0.00 46.34 4.41
3706 3995 3.681897 CCGCTATATAGCCTTTTCAGCAG 59.318 47.826 25.48 9.82 46.34 4.24
3707 3996 3.681897 CGCTATATAGCCTTTTCAGCAGG 59.318 47.826 25.48 6.35 46.34 4.85
3708 3997 4.006319 GCTATATAGCCTTTTCAGCAGGG 58.994 47.826 22.02 0.00 43.39 4.45
3709 3998 4.505742 GCTATATAGCCTTTTCAGCAGGGT 60.506 45.833 22.02 0.00 44.56 4.34
3710 3999 2.134789 ATAGCCTTTTCAGCAGGGTG 57.865 50.000 2.17 0.00 42.32 4.61
3711 4000 0.609131 TAGCCTTTTCAGCAGGGTGC 60.609 55.000 2.17 0.00 42.32 5.01
3712 4001 2.935740 GCCTTTTCAGCAGGGTGCC 61.936 63.158 0.00 0.00 46.52 5.01
3713 4002 2.629656 CCTTTTCAGCAGGGTGCCG 61.630 63.158 0.00 0.00 46.52 5.69
3714 4003 3.273080 CTTTTCAGCAGGGTGCCGC 62.273 63.158 0.00 0.00 46.52 6.53
3715 4004 3.790416 TTTTCAGCAGGGTGCCGCT 62.790 57.895 0.00 0.00 46.52 5.52
3716 4005 2.404566 TTTTCAGCAGGGTGCCGCTA 62.405 55.000 0.00 0.00 46.52 4.26
3717 4006 2.404566 TTTCAGCAGGGTGCCGCTAA 62.405 55.000 0.00 0.00 46.52 3.09
3718 4007 2.359850 CAGCAGGGTGCCGCTAAA 60.360 61.111 0.00 0.00 46.52 1.85
3719 4008 1.750399 CAGCAGGGTGCCGCTAAAT 60.750 57.895 0.00 0.00 46.52 1.40
3720 4009 1.750399 AGCAGGGTGCCGCTAAATG 60.750 57.895 0.00 0.00 46.52 2.32
3721 4010 2.774799 GCAGGGTGCCGCTAAATGG 61.775 63.158 0.00 0.00 37.42 3.16
3722 4011 1.378514 CAGGGTGCCGCTAAATGGT 60.379 57.895 0.00 0.00 0.00 3.55
3723 4012 1.077716 AGGGTGCCGCTAAATGGTC 60.078 57.895 0.00 0.00 0.00 4.02
3724 4013 2.119029 GGGTGCCGCTAAATGGTCC 61.119 63.158 0.00 0.00 0.00 4.46
3725 4014 2.119029 GGTGCCGCTAAATGGTCCC 61.119 63.158 0.00 0.00 0.00 4.46
3726 4015 1.377987 GTGCCGCTAAATGGTCCCA 60.378 57.895 0.00 0.00 0.00 4.37
3727 4016 0.751643 GTGCCGCTAAATGGTCCCAT 60.752 55.000 0.00 0.00 38.46 4.00
3728 4017 0.751277 TGCCGCTAAATGGTCCCATG 60.751 55.000 0.00 0.00 36.68 3.66
3729 4018 0.751643 GCCGCTAAATGGTCCCATGT 60.752 55.000 0.00 0.00 36.68 3.21
3730 4019 1.476110 GCCGCTAAATGGTCCCATGTA 60.476 52.381 0.00 0.00 36.68 2.29
3731 4020 2.218603 CCGCTAAATGGTCCCATGTAC 58.781 52.381 0.00 0.00 36.68 2.90
3732 4021 2.420827 CCGCTAAATGGTCCCATGTACA 60.421 50.000 0.00 0.00 36.68 2.90
3733 4022 3.275143 CGCTAAATGGTCCCATGTACAA 58.725 45.455 0.00 0.00 36.68 2.41
3734 4023 3.692101 CGCTAAATGGTCCCATGTACAAA 59.308 43.478 0.00 0.00 36.68 2.83
3735 4024 4.338118 CGCTAAATGGTCCCATGTACAAAT 59.662 41.667 0.00 0.00 36.68 2.32
3736 4025 5.529430 CGCTAAATGGTCCCATGTACAAATA 59.471 40.000 0.00 0.00 36.68 1.40
3737 4026 6.293407 CGCTAAATGGTCCCATGTACAAATAG 60.293 42.308 0.00 0.00 36.68 1.73
3738 4027 5.852282 AAATGGTCCCATGTACAAATAGC 57.148 39.130 0.00 0.00 36.68 2.97
3739 4028 3.290948 TGGTCCCATGTACAAATAGCC 57.709 47.619 0.00 0.85 0.00 3.93
3740 4029 2.092103 TGGTCCCATGTACAAATAGCCC 60.092 50.000 0.00 0.00 0.00 5.19
3741 4030 2.218603 GTCCCATGTACAAATAGCCCG 58.781 52.381 0.00 0.00 0.00 6.13
3742 4031 0.951558 CCCATGTACAAATAGCCCGC 59.048 55.000 0.00 0.00 0.00 6.13
3743 4032 1.476833 CCCATGTACAAATAGCCCGCT 60.477 52.381 0.00 0.00 0.00 5.52
3744 4033 2.224426 CCCATGTACAAATAGCCCGCTA 60.224 50.000 0.00 0.00 0.00 4.26
3745 4034 3.559171 CCCATGTACAAATAGCCCGCTAT 60.559 47.826 0.00 3.31 40.63 2.97
3746 4035 4.323180 CCCATGTACAAATAGCCCGCTATA 60.323 45.833 9.56 0.00 38.20 1.31
3747 4036 4.870426 CCATGTACAAATAGCCCGCTATAG 59.130 45.833 9.56 8.22 38.20 1.31
3748 4037 3.921677 TGTACAAATAGCCCGCTATAGC 58.078 45.455 15.09 15.09 38.20 2.97
3749 4038 3.576982 TGTACAAATAGCCCGCTATAGCT 59.423 43.478 21.98 6.31 43.20 3.32
3750 4039 3.320673 ACAAATAGCCCGCTATAGCTC 57.679 47.619 21.98 11.04 40.56 4.09
3751 4040 2.028020 ACAAATAGCCCGCTATAGCTCC 60.028 50.000 21.98 10.06 40.56 4.70
3752 4041 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
3753 4042 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
3754 4043 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
3755 4044 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
3769 4058 5.523013 GCTCCGCTATAGCTAATTTTGAG 57.477 43.478 21.98 14.94 39.32 3.02
3770 4059 4.390297 GCTCCGCTATAGCTAATTTTGAGG 59.610 45.833 21.98 12.29 39.32 3.86
3771 4060 5.542779 CTCCGCTATAGCTAATTTTGAGGT 58.457 41.667 21.98 0.00 39.32 3.85
3772 4061 5.539048 TCCGCTATAGCTAATTTTGAGGTC 58.461 41.667 21.98 0.00 39.32 3.85
3773 4062 4.691216 CCGCTATAGCTAATTTTGAGGTCC 59.309 45.833 21.98 0.00 39.32 4.46
3774 4063 4.386049 CGCTATAGCTAATTTTGAGGTCCG 59.614 45.833 21.98 0.00 39.32 4.79
3775 4064 4.152580 GCTATAGCTAATTTTGAGGTCCGC 59.847 45.833 17.75 0.00 38.21 5.54
3776 4065 1.751437 AGCTAATTTTGAGGTCCGCC 58.249 50.000 0.00 0.00 0.00 6.13
3777 4066 0.377203 GCTAATTTTGAGGTCCGCCG 59.623 55.000 0.00 0.00 40.50 6.46
3778 4067 0.377203 CTAATTTTGAGGTCCGCCGC 59.623 55.000 0.00 0.00 40.50 6.53
3779 4068 0.035820 TAATTTTGAGGTCCGCCGCT 60.036 50.000 0.00 0.00 40.50 5.52
3780 4069 0.035820 AATTTTGAGGTCCGCCGCTA 60.036 50.000 0.00 0.00 40.50 4.26
3781 4070 0.180406 ATTTTGAGGTCCGCCGCTAT 59.820 50.000 0.00 0.00 40.50 2.97
3782 4071 0.035820 TTTTGAGGTCCGCCGCTATT 60.036 50.000 0.00 0.00 40.50 1.73
3783 4072 0.035820 TTTGAGGTCCGCCGCTATTT 60.036 50.000 0.00 0.00 40.50 1.40
3784 4073 0.742990 TTGAGGTCCGCCGCTATTTG 60.743 55.000 0.00 0.00 40.50 2.32
3785 4074 1.887707 GAGGTCCGCCGCTATTTGG 60.888 63.158 0.00 0.00 40.50 3.28
3807 4096 4.927422 GCAATAGCCCGCTATTTAAAACA 58.073 39.130 17.30 0.00 44.18 2.83
3808 4097 5.528870 GCAATAGCCCGCTATTTAAAACAT 58.471 37.500 17.30 0.00 44.18 2.71
3809 4098 5.983118 GCAATAGCCCGCTATTTAAAACATT 59.017 36.000 17.30 0.00 44.18 2.71
3810 4099 6.074356 GCAATAGCCCGCTATTTAAAACATTG 60.074 38.462 17.30 8.45 44.18 2.82
3811 4100 6.952773 ATAGCCCGCTATTTAAAACATTGA 57.047 33.333 3.31 0.00 35.92 2.57
3812 4101 5.852282 AGCCCGCTATTTAAAACATTGAT 57.148 34.783 0.00 0.00 0.00 2.57
3813 4102 6.220726 AGCCCGCTATTTAAAACATTGATT 57.779 33.333 0.00 0.00 0.00 2.57
3814 4103 6.042143 AGCCCGCTATTTAAAACATTGATTG 58.958 36.000 0.00 0.00 0.00 2.67
3815 4104 5.234116 GCCCGCTATTTAAAACATTGATTGG 59.766 40.000 0.00 0.00 0.00 3.16
3889 4178 4.142902 ACTCGAACGCTTGGTGATTTATTG 60.143 41.667 0.00 0.00 0.00 1.90
3927 4216 1.134521 AGAAGAAACACCGTGAGCACA 60.135 47.619 5.28 0.00 0.00 4.57
4036 4325 5.402270 CCGACTTTTTCATTTTTGGCTACTG 59.598 40.000 0.00 0.00 0.00 2.74
4047 6792 1.305219 TGGCTACTGCGCATGGTTTC 61.305 55.000 12.24 1.52 40.82 2.78
4058 6803 2.801679 CGCATGGTTTCATTTTTGCACT 59.198 40.909 0.00 0.00 0.00 4.40
4086 6831 5.941948 ATGAAGTAGGTTTAGCACAACAC 57.058 39.130 0.98 0.00 0.00 3.32
4153 6898 0.830648 ATCAGCGCTACCAGCCTTAA 59.169 50.000 10.99 0.00 38.18 1.85
4154 6899 0.830648 TCAGCGCTACCAGCCTTAAT 59.169 50.000 10.99 0.00 38.18 1.40
4155 6900 1.209504 TCAGCGCTACCAGCCTTAATT 59.790 47.619 10.99 0.00 38.18 1.40
4156 6901 2.432874 TCAGCGCTACCAGCCTTAATTA 59.567 45.455 10.99 0.00 38.18 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.620259 AAAACAAAATTGTAATCAGCCCTTTTA 57.380 25.926 0.00 0.00 41.31 1.52
33 34 8.925700 CATGGCCTCTTAAAATTGTACTTTTTC 58.074 33.333 3.32 0.00 31.15 2.29
35 36 6.873605 GCATGGCCTCTTAAAATTGTACTTTT 59.126 34.615 3.32 0.00 33.17 2.27
40 41 5.016173 ACTGCATGGCCTCTTAAAATTGTA 58.984 37.500 3.32 0.00 0.00 2.41
47 48 3.953612 CCATAAACTGCATGGCCTCTTAA 59.046 43.478 3.32 0.00 36.77 1.85
50 51 1.285962 ACCATAAACTGCATGGCCTCT 59.714 47.619 3.32 0.00 45.85 3.69
81 82 9.778741 TTCTACAGAGTGAACTGAAAATATTGT 57.221 29.630 0.00 0.00 40.63 2.71
132 134 3.073274 ACCGAGGAATCTTCTTTTGGG 57.927 47.619 0.00 0.00 0.00 4.12
137 139 4.826274 TCATGAACCGAGGAATCTTCTT 57.174 40.909 0.00 0.00 0.00 2.52
139 141 7.553881 TTATTTCATGAACCGAGGAATCTTC 57.446 36.000 7.89 0.00 0.00 2.87
155 157 5.721000 TGAGGCCCTCACAAATTTATTTCAT 59.279 36.000 10.05 0.00 35.39 2.57
165 168 0.776810 TTCCATGAGGCCCTCACAAA 59.223 50.000 17.46 7.87 43.63 2.83
168 171 1.753073 CAAATTCCATGAGGCCCTCAC 59.247 52.381 17.46 0.00 43.63 3.51
187 190 3.620427 AAGCCCGTTACATCATGTACA 57.380 42.857 0.00 0.00 31.69 2.90
191 194 2.286184 GCGTTAAGCCCGTTACATCATG 60.286 50.000 0.00 0.00 40.81 3.07
218 223 5.665916 ATGAATTTTCATGAGGGGTGAAC 57.334 39.130 5.03 0.00 45.63 3.18
231 236 5.220416 CGAACGAGTACTCCCATGAATTTTC 60.220 44.000 17.23 5.40 0.00 2.29
246 252 5.405873 TGCAAATGTTTGATACGAACGAGTA 59.594 36.000 9.53 0.00 40.55 2.59
254 260 4.730042 CGAATCCTGCAAATGTTTGATACG 59.270 41.667 9.53 0.00 40.55 3.06
272 278 8.483743 TGTTTCTTCGTTATTTTGTTCGAATC 57.516 30.769 0.00 0.00 40.53 2.52
289 295 7.851822 TCGAAACTGCAAATTATGTTTCTTC 57.148 32.000 18.92 1.65 43.29 2.87
304 310 1.461127 ACTGAAGCGAATCGAAACTGC 59.539 47.619 6.91 0.00 0.00 4.40
314 321 3.186409 GCAACTACAATCACTGAAGCGAA 59.814 43.478 0.00 0.00 0.00 4.70
317 324 3.669023 GCAGCAACTACAATCACTGAAGC 60.669 47.826 0.00 0.00 0.00 3.86
320 327 3.407424 AGCAGCAACTACAATCACTGA 57.593 42.857 0.00 0.00 0.00 3.41
343 350 9.527157 TGGAAAATATTCATTTCACTAGACCAA 57.473 29.630 0.00 0.00 38.29 3.67
382 389 7.669304 TCATGGGATTACAAAGAACATCAGAAA 59.331 33.333 0.00 0.00 0.00 2.52
400 407 8.663167 TGATCTATTTATCAACTGTCATGGGAT 58.337 33.333 0.00 0.00 32.97 3.85
402 409 8.152898 TCTGATCTATTTATCAACTGTCATGGG 58.847 37.037 0.00 0.00 35.51 4.00
559 576 5.710099 TCCTTTTCTTCTGTCTCTCTCTCTC 59.290 44.000 0.00 0.00 0.00 3.20
560 577 5.640147 TCCTTTTCTTCTGTCTCTCTCTCT 58.360 41.667 0.00 0.00 0.00 3.10
561 578 5.975693 TCCTTTTCTTCTGTCTCTCTCTC 57.024 43.478 0.00 0.00 0.00 3.20
562 579 6.739331 TTTCCTTTTCTTCTGTCTCTCTCT 57.261 37.500 0.00 0.00 0.00 3.10
563 580 7.977789 AATTTCCTTTTCTTCTGTCTCTCTC 57.022 36.000 0.00 0.00 0.00 3.20
564 581 8.759481 AAAATTTCCTTTTCTTCTGTCTCTCT 57.241 30.769 0.00 0.00 31.23 3.10
565 582 9.885934 GTAAAATTTCCTTTTCTTCTGTCTCTC 57.114 33.333 0.00 0.00 38.09 3.20
566 583 8.851145 GGTAAAATTTCCTTTTCTTCTGTCTCT 58.149 33.333 0.00 0.00 38.09 3.10
567 584 7.803659 CGGTAAAATTTCCTTTTCTTCTGTCTC 59.196 37.037 0.00 0.00 38.09 3.36
568 585 7.284716 ACGGTAAAATTTCCTTTTCTTCTGTCT 59.715 33.333 0.00 0.00 38.09 3.41
569 586 7.378728 CACGGTAAAATTTCCTTTTCTTCTGTC 59.621 37.037 0.00 0.00 38.09 3.51
570 587 7.200455 CACGGTAAAATTTCCTTTTCTTCTGT 58.800 34.615 0.00 0.00 38.09 3.41
586 603 1.344763 CCCAAAATGCCCACGGTAAAA 59.655 47.619 0.00 0.00 0.00 1.52
587 604 0.969894 CCCAAAATGCCCACGGTAAA 59.030 50.000 0.00 0.00 0.00 2.01
693 716 0.810031 GCTGCCGCGTATATATGGGG 60.810 60.000 26.34 26.34 45.24 4.96
694 717 2.677971 GCTGCCGCGTATATATGGG 58.322 57.895 4.92 11.18 0.00 4.00
817 841 0.815734 GCTGGTAGGACAGAGCGTAA 59.184 55.000 0.00 0.00 40.97 3.18
897 925 0.898320 ACTAAGCTGAGCACGATGGT 59.102 50.000 7.39 0.00 0.00 3.55
986 1015 4.980903 CCATTAATGGCGCGCGGC 62.981 66.667 44.34 44.34 41.75 6.53
1174 1203 8.893219 TCGAGTTAATTAGGAGTACGATTAGA 57.107 34.615 0.00 0.00 0.00 2.10
1211 1244 6.153000 ACTGTAGTGGTAGGAGTAATCTGTTG 59.847 42.308 0.00 0.00 0.00 3.33
1223 1256 9.367444 CAAGAAAAATAGTACTGTAGTGGTAGG 57.633 37.037 5.39 0.00 0.00 3.18
1227 1260 8.095169 AGGACAAGAAAAATAGTACTGTAGTGG 58.905 37.037 5.39 0.00 0.00 4.00
1228 1261 8.926710 CAGGACAAGAAAAATAGTACTGTAGTG 58.073 37.037 5.39 0.00 37.98 2.74
1233 1266 6.876257 AGAGCAGGACAAGAAAAATAGTACTG 59.124 38.462 5.39 0.00 44.03 2.74
1234 1267 7.010339 AGAGCAGGACAAGAAAAATAGTACT 57.990 36.000 0.00 0.00 0.00 2.73
1409 1444 8.375493 TGAAGATCCTAAGGTACTGTTTACAT 57.625 34.615 0.00 0.00 40.86 2.29
1410 1445 7.786046 TGAAGATCCTAAGGTACTGTTTACA 57.214 36.000 0.00 0.00 40.86 2.41
1444 1482 3.427161 AGCTTTGTGAACTTGCAAGTC 57.573 42.857 31.20 22.99 38.57 3.01
1500 1549 3.857052 ACAAGAAGAGACGAACACACAA 58.143 40.909 0.00 0.00 0.00 3.33
1606 1666 9.506018 TGTAGAGTTGAAGAATTGATGATGAAA 57.494 29.630 0.00 0.00 0.00 2.69
1607 1667 8.939929 GTGTAGAGTTGAAGAATTGATGATGAA 58.060 33.333 0.00 0.00 0.00 2.57
1608 1668 7.276438 CGTGTAGAGTTGAAGAATTGATGATGA 59.724 37.037 0.00 0.00 0.00 2.92
1609 1669 7.276438 TCGTGTAGAGTTGAAGAATTGATGATG 59.724 37.037 0.00 0.00 0.00 3.07
1749 1816 0.834687 ACTTGCCAGGACTTCCCGTA 60.835 55.000 0.00 0.00 40.87 4.02
1867 1935 4.770795 AGGCCATGCTACACTTAGTTTAG 58.229 43.478 5.01 1.49 0.00 1.85
1896 1969 1.878088 GAGACGGCGATGTATAGTCCA 59.122 52.381 16.62 0.00 32.70 4.02
1909 1982 0.104855 TGGATGCACATAGAGACGGC 59.895 55.000 0.00 0.00 0.00 5.68
1911 1984 1.410517 AGGTGGATGCACATAGAGACG 59.589 52.381 19.67 0.00 0.00 4.18
1912 1985 2.544694 CGAGGTGGATGCACATAGAGAC 60.545 54.545 19.67 0.00 0.00 3.36
1913 1986 1.683385 CGAGGTGGATGCACATAGAGA 59.317 52.381 19.67 0.00 0.00 3.10
1914 1987 1.871408 GCGAGGTGGATGCACATAGAG 60.871 57.143 19.67 8.28 0.00 2.43
2003 2237 9.809395 ACATAGCCAACTGACTAGTAGATATTA 57.191 33.333 3.59 0.00 35.69 0.98
2011 2245 6.129874 TCTGATACATAGCCAACTGACTAGT 58.870 40.000 0.00 0.00 39.32 2.57
2012 2246 6.641169 TCTGATACATAGCCAACTGACTAG 57.359 41.667 0.00 0.00 0.00 2.57
2013 2247 6.015095 CCATCTGATACATAGCCAACTGACTA 60.015 42.308 0.00 0.00 0.00 2.59
2119 2365 0.109689 GCTAGATACGCCGCTAGTGG 60.110 60.000 18.49 18.49 37.13 4.00
2135 2381 0.466739 CAATGCCTGCCTGGATGCTA 60.467 55.000 0.00 0.00 38.35 3.49
2148 2394 1.138859 GCTTGGATTAACCCCAATGCC 59.861 52.381 10.53 0.00 42.23 4.40
2169 2415 2.676632 TCAACATATTGGCCGTACGT 57.323 45.000 15.21 0.00 36.39 3.57
2170 2416 4.545823 ATTTCAACATATTGGCCGTACG 57.454 40.909 8.69 8.69 36.39 3.67
2171 2417 9.162764 AGATATATTTCAACATATTGGCCGTAC 57.837 33.333 0.00 0.00 36.39 3.67
2172 2418 9.733556 AAGATATATTTCAACATATTGGCCGTA 57.266 29.630 0.00 0.00 36.39 4.02
2173 2419 8.635765 AAGATATATTTCAACATATTGGCCGT 57.364 30.769 0.00 0.00 36.39 5.68
2203 2449 1.278127 CGAAAAGCTCTAACCCAGGGA 59.722 52.381 14.54 0.00 0.00 4.20
2204 2450 1.679032 CCGAAAAGCTCTAACCCAGGG 60.679 57.143 2.85 2.85 0.00 4.45
2331 2584 3.256960 GCAGGGGTGGTCCAGGAA 61.257 66.667 0.00 0.00 37.22 3.36
2397 2657 1.355971 TAATGAGAAACGCACTCGGC 58.644 50.000 0.00 0.00 40.69 5.54
2426 2686 2.357881 TTCAGACCTGCAGCAGCG 60.358 61.111 17.81 12.65 46.23 5.18
2573 2834 8.310382 GGACTTGATCATCTGCAGTAAGTATAT 58.690 37.037 14.67 0.00 0.00 0.86
2574 2835 7.255977 GGGACTTGATCATCTGCAGTAAGTATA 60.256 40.741 14.67 0.00 0.00 1.47
2575 2836 6.463614 GGGACTTGATCATCTGCAGTAAGTAT 60.464 42.308 14.67 0.00 0.00 2.12
2576 2837 5.163405 GGGACTTGATCATCTGCAGTAAGTA 60.163 44.000 14.67 0.00 0.00 2.24
2577 2838 4.383552 GGGACTTGATCATCTGCAGTAAGT 60.384 45.833 14.67 14.34 0.00 2.24
2578 2839 4.125703 GGGACTTGATCATCTGCAGTAAG 58.874 47.826 14.67 11.59 0.00 2.34
2579 2840 3.118261 GGGGACTTGATCATCTGCAGTAA 60.118 47.826 14.67 0.45 0.00 2.24
2581 2842 1.211457 GGGGACTTGATCATCTGCAGT 59.789 52.381 14.67 0.00 0.00 4.40
2582 2843 1.476471 GGGGGACTTGATCATCTGCAG 60.476 57.143 7.63 7.63 0.00 4.41
2584 2845 3.410960 GGGGGACTTGATCATCTGC 57.589 57.895 0.00 0.00 0.00 4.26
2599 2860 1.212935 GCATGCATATAGGGTAGGGGG 59.787 57.143 14.21 0.00 0.00 5.40
2600 2861 1.915489 TGCATGCATATAGGGTAGGGG 59.085 52.381 18.46 0.00 0.00 4.79
2601 2862 2.840038 TCTGCATGCATATAGGGTAGGG 59.160 50.000 22.97 4.74 0.00 3.53
2602 2863 4.767578 ATCTGCATGCATATAGGGTAGG 57.232 45.455 22.97 5.31 0.00 3.18
2603 2864 4.334759 GCAATCTGCATGCATATAGGGTAG 59.665 45.833 22.97 6.12 44.26 3.18
2604 2865 4.264253 GCAATCTGCATGCATATAGGGTA 58.736 43.478 22.97 0.00 44.26 3.69
2605 2866 3.087031 GCAATCTGCATGCATATAGGGT 58.913 45.455 22.97 1.61 44.26 4.34
2606 2867 3.777465 GCAATCTGCATGCATATAGGG 57.223 47.619 22.97 13.23 44.26 3.53
2618 2879 2.306341 TAGCTCAGTCTGCAATCTGC 57.694 50.000 11.49 0.00 45.29 4.26
2619 2880 5.236047 GGTATTTAGCTCAGTCTGCAATCTG 59.764 44.000 10.42 10.42 0.00 2.90
2620 2881 5.363939 GGTATTTAGCTCAGTCTGCAATCT 58.636 41.667 0.00 0.00 0.00 2.40
2621 2882 4.210120 CGGTATTTAGCTCAGTCTGCAATC 59.790 45.833 0.00 0.00 0.00 2.67
2622 2883 4.122776 CGGTATTTAGCTCAGTCTGCAAT 58.877 43.478 0.00 0.00 0.00 3.56
2623 2884 3.521560 CGGTATTTAGCTCAGTCTGCAA 58.478 45.455 0.00 0.00 0.00 4.08
2634 2895 4.950434 TTTTAGCACACCGGTATTTAGC 57.050 40.909 6.87 7.31 0.00 3.09
2636 2897 8.452534 CACTAAATTTTAGCACACCGGTATTTA 58.547 33.333 6.87 10.52 0.00 1.40
2637 2898 7.040271 ACACTAAATTTTAGCACACCGGTATTT 60.040 33.333 6.87 9.87 0.00 1.40
2638 2899 6.431852 ACACTAAATTTTAGCACACCGGTATT 59.568 34.615 6.87 0.00 0.00 1.89
2639 2900 5.941647 ACACTAAATTTTAGCACACCGGTAT 59.058 36.000 6.87 0.00 0.00 2.73
2640 2901 5.179742 CACACTAAATTTTAGCACACCGGTA 59.820 40.000 6.87 0.00 0.00 4.02
2642 2903 4.472286 CACACTAAATTTTAGCACACCGG 58.528 43.478 14.67 0.00 0.00 5.28
2643 2904 3.911964 GCACACTAAATTTTAGCACACCG 59.088 43.478 14.67 1.64 0.00 4.94
2644 2905 3.911964 CGCACACTAAATTTTAGCACACC 59.088 43.478 14.67 1.70 0.00 4.16
2645 2906 3.360758 GCGCACACTAAATTTTAGCACAC 59.639 43.478 14.67 3.74 0.00 3.82
2646 2907 3.252215 AGCGCACACTAAATTTTAGCACA 59.748 39.130 11.47 0.00 0.00 4.57
2647 2908 3.821841 AGCGCACACTAAATTTTAGCAC 58.178 40.909 11.47 3.15 0.00 4.40
2648 2909 4.215399 AGAAGCGCACACTAAATTTTAGCA 59.785 37.500 11.47 0.00 0.00 3.49
2658 2934 2.610479 CCTGAAGAAGAAGCGCACACTA 60.610 50.000 11.47 0.00 0.00 2.74
2664 2940 0.603975 ACCACCTGAAGAAGAAGCGC 60.604 55.000 0.00 0.00 0.00 5.92
2667 2944 2.678324 GTCGACCACCTGAAGAAGAAG 58.322 52.381 3.51 0.00 0.00 2.85
3075 3361 2.716244 CCGTCATCCTCGGTCGAG 59.284 66.667 12.87 12.87 42.62 4.04
3175 3461 0.179054 GAGGGCTAACGGTGGGAATC 60.179 60.000 0.00 0.00 0.00 2.52
3176 3462 1.912971 GAGGGCTAACGGTGGGAAT 59.087 57.895 0.00 0.00 0.00 3.01
3177 3463 2.652095 CGAGGGCTAACGGTGGGAA 61.652 63.158 0.00 0.00 0.00 3.97
3525 3814 9.798994 AGAATTATCATAATCCGACGTAATACC 57.201 33.333 0.00 0.00 0.00 2.73
3549 3838 8.958119 AGTCAAAATACAGTTAGACAAACAGA 57.042 30.769 0.00 0.00 40.83 3.41
3614 3903 2.137810 AGTCTAGTCCTGAGTCCTGC 57.862 55.000 0.00 0.00 0.00 4.85
3622 3911 4.279671 CACCAATAGGCTAGTCTAGTCCTG 59.720 50.000 22.92 12.94 39.06 3.86
3623 3912 4.475345 CACCAATAGGCTAGTCTAGTCCT 58.525 47.826 20.08 20.08 39.06 3.85
3624 3913 3.574826 CCACCAATAGGCTAGTCTAGTCC 59.425 52.174 10.36 9.53 39.06 3.85
3625 3914 4.857509 CCACCAATAGGCTAGTCTAGTC 57.142 50.000 10.36 3.06 39.06 2.59
3636 3925 7.224557 GCTATTTAAAACATTGCCACCAATAGG 59.775 37.037 0.00 0.00 39.60 2.57
3637 3926 7.224557 GGCTATTTAAAACATTGCCACCAATAG 59.775 37.037 7.58 0.00 40.91 1.73
3638 3927 7.044798 GGCTATTTAAAACATTGCCACCAATA 58.955 34.615 7.58 0.00 40.91 1.90
3639 3928 5.879777 GGCTATTTAAAACATTGCCACCAAT 59.120 36.000 7.58 0.00 40.91 3.16
3640 3929 5.241662 GGCTATTTAAAACATTGCCACCAA 58.758 37.500 7.58 0.00 40.91 3.67
3641 3930 4.619394 CGGCTATTTAAAACATTGCCACCA 60.619 41.667 11.54 0.00 41.18 4.17
3642 3931 3.862845 CGGCTATTTAAAACATTGCCACC 59.137 43.478 11.54 0.00 41.18 4.61
3643 3932 3.862845 CCGGCTATTTAAAACATTGCCAC 59.137 43.478 11.54 0.00 41.18 5.01
3644 3933 3.677424 GCCGGCTATTTAAAACATTGCCA 60.677 43.478 22.15 0.00 41.18 4.92
3645 3934 2.863740 GCCGGCTATTTAAAACATTGCC 59.136 45.455 22.15 0.00 38.68 4.52
3646 3935 3.780902 AGCCGGCTATTTAAAACATTGC 58.219 40.909 31.86 0.00 0.00 3.56
3647 3936 6.801862 GCTATAGCCGGCTATTTAAAACATTG 59.198 38.462 44.65 25.37 39.65 2.82
3648 3937 6.715264 AGCTATAGCCGGCTATTTAAAACATT 59.285 34.615 44.65 25.26 43.38 2.71
3649 3938 6.238648 AGCTATAGCCGGCTATTTAAAACAT 58.761 36.000 44.65 26.89 43.38 2.71
3650 3939 5.617252 AGCTATAGCCGGCTATTTAAAACA 58.383 37.500 44.65 27.89 43.38 2.83
3651 3940 5.121925 GGAGCTATAGCCGGCTATTTAAAAC 59.878 44.000 44.65 30.15 43.38 2.43
3652 3941 5.243207 GGAGCTATAGCCGGCTATTTAAAA 58.757 41.667 44.65 29.19 43.38 1.52
3653 3942 4.619863 CGGAGCTATAGCCGGCTATTTAAA 60.620 45.833 44.65 29.52 43.67 1.52
3654 3943 3.119245 CGGAGCTATAGCCGGCTATTTAA 60.119 47.826 44.65 29.85 43.67 1.52
3655 3944 2.426024 CGGAGCTATAGCCGGCTATTTA 59.574 50.000 44.65 30.51 43.67 1.40
3656 3945 1.204941 CGGAGCTATAGCCGGCTATTT 59.795 52.381 44.65 31.93 43.67 1.40
3657 3946 0.818296 CGGAGCTATAGCCGGCTATT 59.182 55.000 44.65 31.45 43.67 1.73
3658 3947 2.494677 CGGAGCTATAGCCGGCTAT 58.505 57.895 42.09 42.09 43.67 2.97
3659 3948 3.998156 CGGAGCTATAGCCGGCTA 58.002 61.111 36.88 36.88 43.67 3.93
3671 3960 1.668101 ATAGCGGGCTATAGCGGAGC 61.668 60.000 22.13 22.13 42.31 4.70
3672 3961 1.676746 TATAGCGGGCTATAGCGGAG 58.323 55.000 18.30 12.52 43.26 4.63
3673 3962 2.359981 ATATAGCGGGCTATAGCGGA 57.640 50.000 21.13 4.91 42.57 5.54
3674 3963 2.095161 GCTATATAGCGGGCTATAGCGG 60.095 54.545 18.61 13.46 42.57 5.52
3675 3964 3.204597 GCTATATAGCGGGCTATAGCG 57.795 52.381 18.61 15.96 42.57 4.26
3687 3976 4.999950 CACCCTGCTGAAAAGGCTATATAG 59.000 45.833 5.30 5.30 33.07 1.31
3688 3977 4.746702 GCACCCTGCTGAAAAGGCTATATA 60.747 45.833 0.00 0.00 40.96 0.86
3689 3978 3.825328 CACCCTGCTGAAAAGGCTATAT 58.175 45.455 0.00 0.00 33.07 0.86
3690 3979 2.683742 GCACCCTGCTGAAAAGGCTATA 60.684 50.000 0.00 0.00 40.96 1.31
3691 3980 1.957113 GCACCCTGCTGAAAAGGCTAT 60.957 52.381 0.00 0.00 40.96 2.97
3692 3981 0.609131 GCACCCTGCTGAAAAGGCTA 60.609 55.000 0.00 0.00 40.96 3.93
3693 3982 1.905354 GCACCCTGCTGAAAAGGCT 60.905 57.895 0.00 0.00 40.96 4.58
3694 3983 2.653115 GCACCCTGCTGAAAAGGC 59.347 61.111 0.00 0.00 40.96 4.35
3695 3984 3.369921 GGCACCCTGCTGAAAAGG 58.630 61.111 0.00 0.00 44.28 3.11
3702 3991 1.750399 CATTTAGCGGCACCCTGCT 60.750 57.895 1.45 2.32 44.28 4.24
3703 3992 2.774799 CCATTTAGCGGCACCCTGC 61.775 63.158 1.45 0.00 44.08 4.85
3704 3993 1.376609 GACCATTTAGCGGCACCCTG 61.377 60.000 1.45 0.00 0.00 4.45
3705 3994 1.077716 GACCATTTAGCGGCACCCT 60.078 57.895 1.45 0.00 0.00 4.34
3706 3995 2.119029 GGACCATTTAGCGGCACCC 61.119 63.158 1.45 0.00 0.00 4.61
3707 3996 2.119029 GGGACCATTTAGCGGCACC 61.119 63.158 1.45 0.00 0.00 5.01
3708 3997 0.751643 ATGGGACCATTTAGCGGCAC 60.752 55.000 1.45 0.00 31.82 5.01
3709 3998 0.751277 CATGGGACCATTTAGCGGCA 60.751 55.000 1.45 0.00 33.90 5.69
3710 3999 0.751643 ACATGGGACCATTTAGCGGC 60.752 55.000 0.00 0.00 33.90 6.53
3711 4000 2.218603 GTACATGGGACCATTTAGCGG 58.781 52.381 0.00 0.00 33.90 5.52
3712 4001 2.912771 TGTACATGGGACCATTTAGCG 58.087 47.619 0.00 0.00 33.90 4.26
3713 4002 5.852282 ATTTGTACATGGGACCATTTAGC 57.148 39.130 0.00 0.00 33.90 3.09
3714 4003 6.016276 GGCTATTTGTACATGGGACCATTTAG 60.016 42.308 0.00 0.00 33.90 1.85
3715 4004 5.830991 GGCTATTTGTACATGGGACCATTTA 59.169 40.000 0.00 0.00 33.90 1.40
3716 4005 4.649218 GGCTATTTGTACATGGGACCATTT 59.351 41.667 0.00 0.00 33.90 2.32
3717 4006 4.215109 GGCTATTTGTACATGGGACCATT 58.785 43.478 0.00 0.00 33.90 3.16
3718 4007 3.436470 GGGCTATTTGTACATGGGACCAT 60.436 47.826 0.00 0.00 37.08 3.55
3719 4008 2.092103 GGGCTATTTGTACATGGGACCA 60.092 50.000 0.00 0.00 0.00 4.02
3720 4009 2.583143 GGGCTATTTGTACATGGGACC 58.417 52.381 0.00 0.00 0.00 4.46
3721 4010 2.218603 CGGGCTATTTGTACATGGGAC 58.781 52.381 0.00 0.00 0.00 4.46
3722 4011 1.476110 GCGGGCTATTTGTACATGGGA 60.476 52.381 0.00 0.00 0.00 4.37
3723 4012 0.951558 GCGGGCTATTTGTACATGGG 59.048 55.000 0.00 0.00 0.00 4.00
3724 4013 1.967319 AGCGGGCTATTTGTACATGG 58.033 50.000 0.00 0.00 0.00 3.66
3725 4014 4.330074 GCTATAGCGGGCTATTTGTACATG 59.670 45.833 17.49 0.00 39.65 3.21
3726 4015 4.504858 GCTATAGCGGGCTATTTGTACAT 58.495 43.478 17.49 0.00 39.65 2.29
3727 4016 3.921677 GCTATAGCGGGCTATTTGTACA 58.078 45.455 17.49 0.00 39.65 2.90
3752 4041 4.152580 GCGGACCTCAAAATTAGCTATAGC 59.847 45.833 17.33 17.33 42.49 2.97
3753 4042 4.691216 GGCGGACCTCAAAATTAGCTATAG 59.309 45.833 0.00 0.00 0.00 1.31
3754 4043 4.638304 GGCGGACCTCAAAATTAGCTATA 58.362 43.478 0.00 0.00 0.00 1.31
3755 4044 3.477530 GGCGGACCTCAAAATTAGCTAT 58.522 45.455 0.00 0.00 0.00 2.97
3756 4045 2.740580 CGGCGGACCTCAAAATTAGCTA 60.741 50.000 0.00 0.00 0.00 3.32
3757 4046 1.751437 GGCGGACCTCAAAATTAGCT 58.249 50.000 0.00 0.00 0.00 3.32
3758 4047 0.377203 CGGCGGACCTCAAAATTAGC 59.623 55.000 0.00 0.00 0.00 3.09
3759 4048 0.377203 GCGGCGGACCTCAAAATTAG 59.623 55.000 9.78 0.00 0.00 1.73
3760 4049 0.035820 AGCGGCGGACCTCAAAATTA 60.036 50.000 9.78 0.00 0.00 1.40
3761 4050 0.035820 TAGCGGCGGACCTCAAAATT 60.036 50.000 9.78 0.00 0.00 1.82
3762 4051 0.180406 ATAGCGGCGGACCTCAAAAT 59.820 50.000 9.78 0.00 0.00 1.82
3763 4052 0.035820 AATAGCGGCGGACCTCAAAA 60.036 50.000 9.78 0.00 0.00 2.44
3764 4053 0.035820 AAATAGCGGCGGACCTCAAA 60.036 50.000 9.78 0.00 0.00 2.69
3765 4054 0.742990 CAAATAGCGGCGGACCTCAA 60.743 55.000 9.78 0.00 0.00 3.02
3766 4055 1.153449 CAAATAGCGGCGGACCTCA 60.153 57.895 9.78 0.00 0.00 3.86
3767 4056 1.887707 CCAAATAGCGGCGGACCTC 60.888 63.158 9.78 0.00 0.00 3.85
3768 4057 2.189521 CCAAATAGCGGCGGACCT 59.810 61.111 9.78 0.00 0.00 3.85
3769 4058 3.583086 GCCAAATAGCGGCGGACC 61.583 66.667 9.78 0.00 40.35 4.46
3785 4074 4.927422 TGTTTTAAATAGCGGGCTATTGC 58.073 39.130 22.61 12.89 45.37 3.56
3786 4075 7.199766 TCAATGTTTTAAATAGCGGGCTATTG 58.800 34.615 22.61 12.00 45.37 1.90
3788 4077 6.952773 TCAATGTTTTAAATAGCGGGCTAT 57.047 33.333 7.36 7.36 40.63 2.97
3789 4078 6.952773 ATCAATGTTTTAAATAGCGGGCTA 57.047 33.333 2.42 2.42 0.00 3.93
3790 4079 5.852282 ATCAATGTTTTAAATAGCGGGCT 57.148 34.783 0.00 0.00 0.00 5.19
3791 4080 5.234116 CCAATCAATGTTTTAAATAGCGGGC 59.766 40.000 0.00 0.00 0.00 6.13
3792 4081 6.255453 CACCAATCAATGTTTTAAATAGCGGG 59.745 38.462 0.00 0.00 0.00 6.13
3793 4082 6.255453 CCACCAATCAATGTTTTAAATAGCGG 59.745 38.462 0.00 0.00 0.00 5.52
3794 4083 6.811170 ACCACCAATCAATGTTTTAAATAGCG 59.189 34.615 0.00 0.00 0.00 4.26
3795 4084 8.546597 AACCACCAATCAATGTTTTAAATAGC 57.453 30.769 0.00 0.00 0.00 2.97
3802 4091 9.401058 TGAAAATAAACCACCAATCAATGTTTT 57.599 25.926 0.00 0.00 32.02 2.43
3803 4092 8.970859 TGAAAATAAACCACCAATCAATGTTT 57.029 26.923 0.00 0.00 33.96 2.83
3805 4094 9.874205 CTATGAAAATAAACCACCAATCAATGT 57.126 29.630 0.00 0.00 0.00 2.71
3809 4098 9.527157 TCTTCTATGAAAATAAACCACCAATCA 57.473 29.630 0.00 0.00 0.00 2.57
3812 4101 9.974980 GTTTCTTCTATGAAAATAAACCACCAA 57.025 29.630 0.00 0.00 37.63 3.67
3813 4102 9.137459 TGTTTCTTCTATGAAAATAAACCACCA 57.863 29.630 0.00 0.00 37.63 4.17
3814 4103 9.406828 GTGTTTCTTCTATGAAAATAAACCACC 57.593 33.333 0.00 0.00 37.63 4.61
3815 4104 9.406828 GGTGTTTCTTCTATGAAAATAAACCAC 57.593 33.333 0.00 0.00 37.63 4.16
3897 4186 8.289939 TCACGGTGTTTCTTCTATAGTTCTAT 57.710 34.615 8.17 0.00 0.00 1.98
3898 4187 7.627939 GCTCACGGTGTTTCTTCTATAGTTCTA 60.628 40.741 8.17 0.00 0.00 2.10
3899 4188 6.585695 TCACGGTGTTTCTTCTATAGTTCT 57.414 37.500 8.17 0.00 0.00 3.01
3900 4189 5.288952 GCTCACGGTGTTTCTTCTATAGTTC 59.711 44.000 8.17 0.00 0.00 3.01
3901 4190 5.169295 GCTCACGGTGTTTCTTCTATAGTT 58.831 41.667 8.17 0.00 0.00 2.24
3902 4191 4.219944 TGCTCACGGTGTTTCTTCTATAGT 59.780 41.667 8.17 0.00 0.00 2.12
3903 4192 4.563184 GTGCTCACGGTGTTTCTTCTATAG 59.437 45.833 8.17 0.00 0.00 1.31
3904 4193 4.021807 TGTGCTCACGGTGTTTCTTCTATA 60.022 41.667 8.17 0.00 0.00 1.31
3927 4216 0.753262 AGTCCTGAACTCAGCGTTGT 59.247 50.000 0.00 0.00 42.47 3.32
3978 4267 1.961180 ATCGCTCGGTTGGCTAGCTT 61.961 55.000 15.72 0.00 34.03 3.74
4015 4304 4.744631 CGCAGTAGCCAAAAATGAAAAAGT 59.255 37.500 0.00 0.00 37.52 2.66
4036 4325 1.530293 TGCAAAAATGAAACCATGCGC 59.470 42.857 0.00 0.00 36.62 6.09
4047 6792 8.607459 CCTACTTCATAGTCTAGTGCAAAAATG 58.393 37.037 0.00 0.00 35.78 2.32
4058 6803 7.949690 TGTGCTAAACCTACTTCATAGTCTA 57.050 36.000 0.00 0.00 35.78 2.59
4086 6831 4.616381 TGCGATTGTTGAATTGTCGAATTG 59.384 37.500 0.00 0.00 31.58 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.