Multiple sequence alignment - TraesCS2D01G361300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G361300 chr2D 100.000 3239 0 0 1 3239 465151788 465155026 0.000000e+00 5982.0
1 TraesCS2D01G361300 chr2D 92.627 434 18 5 2807 3239 465057767 465058187 2.140000e-171 612.0
2 TraesCS2D01G361300 chr2D 91.935 434 21 7 2807 3239 465119387 465119807 2.150000e-166 595.0
3 TraesCS2D01G361300 chr2D 97.826 92 2 0 2455 2546 13622543 13622452 3.340000e-35 159.0
4 TraesCS2D01G361300 chr6B 96.491 2479 61 2 1 2460 144956098 144958569 0.000000e+00 4072.0
5 TraesCS2D01G361300 chr6B 96.604 265 8 1 2542 2806 144958568 144958831 3.840000e-119 438.0
6 TraesCS2D01G361300 chr6B 94.624 93 5 0 2459 2551 607208216 607208124 9.370000e-31 145.0
7 TraesCS2D01G361300 chr4A 96.491 2479 61 2 1 2460 583957310 583954839 0.000000e+00 4072.0
8 TraesCS2D01G361300 chr4A 95.922 1888 51 2 592 2460 583960985 583959105 0.000000e+00 3037.0
9 TraesCS2D01G361300 chr4A 96.296 270 9 1 2542 2811 583959106 583958838 2.970000e-120 442.0
10 TraesCS2D01G361300 chr4A 95.556 270 11 1 2542 2811 583954840 583954572 6.420000e-117 431.0
11 TraesCS2D01G361300 chr2A 93.961 2484 120 15 1 2460 468299918 468297441 0.000000e+00 3729.0
12 TraesCS2D01G361300 chr2A 93.309 269 15 3 2542 2809 468297442 468297176 8.420000e-106 394.0
13 TraesCS2D01G361300 chr6A 93.398 2484 136 13 1 2460 137336419 137338898 0.000000e+00 3653.0
14 TraesCS2D01G361300 chr6A 91.237 1803 121 21 859 2631 577735415 577737210 0.000000e+00 2420.0
15 TraesCS2D01G361300 chr6A 96.093 1382 50 2 1 1382 201757956 201759333 0.000000e+00 2250.0
16 TraesCS2D01G361300 chr6A 93.449 519 33 1 326 844 577733179 577733696 0.000000e+00 769.0
17 TraesCS2D01G361300 chr6A 91.121 428 30 2 2813 3239 317823521 317823101 1.010000e-159 573.0
18 TraesCS2D01G361300 chr6A 95.094 265 12 1 2542 2806 201760331 201760594 1.800000e-112 416.0
19 TraesCS2D01G361300 chr6A 100.000 88 0 0 1413 1500 201759331 201759418 2.590000e-36 163.0
20 TraesCS2D01G361300 chr2B 92.915 2484 145 16 1 2460 289895689 289893213 0.000000e+00 3583.0
21 TraesCS2D01G361300 chr2B 94.815 270 11 3 2542 2811 289893214 289892948 5.000000e-113 418.0
22 TraesCS2D01G361300 chr2B 92.308 104 6 2 2442 2544 699174222 699174324 2.600000e-31 147.0
23 TraesCS2D01G361300 chr3D 95.937 1526 58 2 1 1524 18300478 18302001 0.000000e+00 2471.0
24 TraesCS2D01G361300 chr3D 95.686 255 9 1 1 253 540278716 540278970 3.010000e-110 409.0
25 TraesCS2D01G361300 chr3D 93.091 275 16 3 2542 2816 18302891 18303162 1.810000e-107 399.0
26 TraesCS2D01G361300 chr3D 82.426 404 62 8 2829 3227 397362984 397362585 8.600000e-91 344.0
27 TraesCS2D01G361300 chr3D 96.703 91 3 0 2459 2549 44891219 44891309 5.600000e-33 152.0
28 TraesCS2D01G361300 chr3D 94.737 95 5 0 2450 2544 576747366 576747460 7.240000e-32 148.0
29 TraesCS2D01G361300 chr7A 97.558 1433 28 1 1 1433 577210133 577211558 0.000000e+00 2446.0
30 TraesCS2D01G361300 chr7A 96.889 1382 42 1 1 1382 654304392 654305772 0.000000e+00 2313.0
31 TraesCS2D01G361300 chr7A 94.580 904 30 1 1576 2460 577211950 577212853 0.000000e+00 1380.0
32 TraesCS2D01G361300 chr7A 92.959 909 41 5 1572 2460 654305866 654306771 0.000000e+00 1303.0
33 TraesCS2D01G361300 chr7A 91.705 434 28 7 2807 3239 423724458 423724032 2.150000e-166 595.0
34 TraesCS2D01G361300 chr7A 91.014 434 31 2 2807 3239 446859902 446860328 2.170000e-161 579.0
35 TraesCS2D01G361300 chr7A 90.783 434 26 2 2807 3239 570331604 570331184 4.690000e-158 568.0
36 TraesCS2D01G361300 chr7A 96.604 265 8 1 2542 2806 577212852 577213115 3.840000e-119 438.0
37 TraesCS2D01G361300 chr7A 94.424 269 14 1 2542 2810 654306770 654307037 2.330000e-111 412.0
38 TraesCS2D01G361300 chr4D 93.088 434 15 8 2807 3239 352175783 352175364 3.550000e-174 621.0
39 TraesCS2D01G361300 chr1A 92.449 437 29 4 2807 3239 354385775 354385339 3.550000e-174 621.0
40 TraesCS2D01G361300 chr5B 89.069 494 49 4 1 492 310042826 310042336 2.760000e-170 608.0
41 TraesCS2D01G361300 chr7D 92.166 434 24 4 2807 3239 414969020 414968596 3.570000e-169 604.0
42 TraesCS2D01G361300 chr7D 95.082 61 3 0 1 61 81230759 81230819 2.660000e-16 97.1
43 TraesCS2D01G361300 chr5A 89.953 428 35 5 2813 3239 392996595 392996175 2.200000e-151 545.0
44 TraesCS2D01G361300 chr5A 95.745 94 3 1 2459 2552 207681830 207681922 2.010000e-32 150.0
45 TraesCS2D01G361300 chrUn 98.052 154 3 0 1 154 389147600 389147753 5.330000e-68 268.0
46 TraesCS2D01G361300 chr7B 97.701 87 2 0 2459 2545 440325688 440325602 2.010000e-32 150.0
47 TraesCS2D01G361300 chr5D 93.814 97 6 0 2455 2551 367998175 367998079 2.600000e-31 147.0
48 TraesCS2D01G361300 chr3B 91.509 106 9 0 2447 2552 623657660 623657555 2.600000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G361300 chr2D 465151788 465155026 3238 False 5982.000000 5982 100.000000 1 3239 1 chr2D.!!$F3 3238
1 TraesCS2D01G361300 chr6B 144956098 144958831 2733 False 2255.000000 4072 96.547500 1 2806 2 chr6B.!!$F1 2805
2 TraesCS2D01G361300 chr4A 583954572 583960985 6413 True 1995.500000 4072 96.066250 1 2811 4 chr4A.!!$R1 2810
3 TraesCS2D01G361300 chr2A 468297176 468299918 2742 True 2061.500000 3729 93.635000 1 2809 2 chr2A.!!$R1 2808
4 TraesCS2D01G361300 chr6A 137336419 137338898 2479 False 3653.000000 3653 93.398000 1 2460 1 chr6A.!!$F1 2459
5 TraesCS2D01G361300 chr6A 577733179 577737210 4031 False 1594.500000 2420 92.343000 326 2631 2 chr6A.!!$F3 2305
6 TraesCS2D01G361300 chr6A 201757956 201760594 2638 False 943.000000 2250 97.062333 1 2806 3 chr6A.!!$F2 2805
7 TraesCS2D01G361300 chr2B 289892948 289895689 2741 True 2000.500000 3583 93.865000 1 2811 2 chr2B.!!$R1 2810
8 TraesCS2D01G361300 chr3D 18300478 18303162 2684 False 1435.000000 2471 94.514000 1 2816 2 chr3D.!!$F4 2815
9 TraesCS2D01G361300 chr7A 577210133 577213115 2982 False 1421.333333 2446 96.247333 1 2806 3 chr7A.!!$F2 2805
10 TraesCS2D01G361300 chr7A 654304392 654307037 2645 False 1342.666667 2313 94.757333 1 2810 3 chr7A.!!$F3 2809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 4333 1.751924 GGGAGTAGCAATCGTGTCTCT 59.248 52.381 0.00 0.00 0.00 3.10 F
2027 7662 0.393402 CCAATAGCAGCTGCAGACCA 60.393 55.000 38.24 18.72 45.16 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 7849 0.034863 TTGATGGATCAGCAGCTGCA 60.035 50.0 38.24 21.24 45.16 4.41 R
3111 8773 0.103572 GTCCCTTACGGAATAGCGCA 59.896 55.0 11.47 0.00 44.47 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
654 4333 1.751924 GGGAGTAGCAATCGTGTCTCT 59.248 52.381 0.00 0.00 0.00 3.10
729 4408 6.351711 CCAACAGATGTGGAATGATAGAGAA 58.648 40.000 0.00 0.00 0.00 2.87
886 6268 6.403866 TCTTTTCCATGTATTGTGCAACTT 57.596 33.333 0.00 0.00 38.04 2.66
929 6313 6.073447 ACTGTTGGGTAATGTATGGATTGA 57.927 37.500 0.00 0.00 0.00 2.57
933 6317 5.047566 TGGGTAATGTATGGATTGACTGG 57.952 43.478 0.00 0.00 0.00 4.00
1028 6412 1.473080 GCAAAAAGAAGGTGCCAAGCA 60.473 47.619 0.00 0.00 35.60 3.91
1092 6476 8.870116 AGTGATGATTGTACCAAGTATATGCTA 58.130 33.333 0.00 0.00 0.00 3.49
1586 7221 6.815089 TGTTGTGCTTTTAAATTGACCAGAT 58.185 32.000 0.00 0.00 0.00 2.90
1589 7224 9.423061 GTTGTGCTTTTAAATTGACCAGATTAT 57.577 29.630 0.00 0.00 0.00 1.28
1592 7227 8.798153 GTGCTTTTAAATTGACCAGATTATTCG 58.202 33.333 0.00 0.00 0.00 3.34
1593 7228 7.973388 TGCTTTTAAATTGACCAGATTATTCGG 59.027 33.333 0.00 0.00 0.00 4.30
1605 7240 8.746052 ACCAGATTATTCGGACAATTTATTGA 57.254 30.769 9.32 0.00 40.14 2.57
1606 7241 9.354673 ACCAGATTATTCGGACAATTTATTGAT 57.645 29.630 9.32 0.00 40.14 2.57
1630 7265 9.369904 GATTTGATATGCTTTGGTTTATGTTGT 57.630 29.630 0.00 0.00 0.00 3.32
1923 7558 2.452600 AGAAACCAAAGGTCAAGGCA 57.547 45.000 0.00 0.00 33.12 4.75
2027 7662 0.393402 CCAATAGCAGCTGCAGACCA 60.393 55.000 38.24 18.72 45.16 4.02
2155 7790 1.613925 TCTTGAACTGTGCTAGCGACT 59.386 47.619 10.77 0.00 0.00 4.18
2292 7930 6.391537 AGTGCTTTTGTAGTCTACTTAGCTC 58.608 40.000 21.36 19.07 32.39 4.09
2466 8124 7.275920 TGAAGATGCTTCTAAATTACTCCCTC 58.724 38.462 2.02 0.00 0.00 4.30
2470 8128 4.142004 TGCTTCTAAATTACTCCCTCCGTC 60.142 45.833 0.00 0.00 0.00 4.79
2474 8132 2.191981 AATTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
2478 8136 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2479 8137 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2484 8142 3.519510 CCCTCCGTCCCATAATGTATGAT 59.480 47.826 0.00 0.00 38.45 2.45
2485 8143 4.507710 CCTCCGTCCCATAATGTATGATG 58.492 47.826 0.00 0.00 38.45 3.07
2486 8144 4.020218 CCTCCGTCCCATAATGTATGATGT 60.020 45.833 0.00 0.00 38.45 3.06
2487 8145 5.513094 CCTCCGTCCCATAATGTATGATGTT 60.513 44.000 0.00 0.00 38.45 2.71
2488 8146 5.935945 TCCGTCCCATAATGTATGATGTTT 58.064 37.500 0.00 0.00 38.45 2.83
2541 8200 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
2662 8324 4.405358 ACAAACCAATTGGAAGACACATGT 59.595 37.500 31.22 17.54 43.66 3.21
2811 8473 5.237815 CGCAAACCAATCAGCCTCTATATA 58.762 41.667 0.00 0.00 0.00 0.86
2813 8475 6.372659 CGCAAACCAATCAGCCTCTATATATT 59.627 38.462 0.00 0.00 0.00 1.28
2814 8476 7.413438 CGCAAACCAATCAGCCTCTATATATTC 60.413 40.741 0.00 0.00 0.00 1.75
2815 8477 7.391554 GCAAACCAATCAGCCTCTATATATTCA 59.608 37.037 0.00 0.00 0.00 2.57
2816 8478 8.944029 CAAACCAATCAGCCTCTATATATTCAG 58.056 37.037 0.00 0.00 0.00 3.02
2817 8479 8.441311 AACCAATCAGCCTCTATATATTCAGA 57.559 34.615 0.00 0.00 0.00 3.27
2818 8480 8.621126 ACCAATCAGCCTCTATATATTCAGAT 57.379 34.615 0.00 0.00 0.00 2.90
2819 8481 8.703743 ACCAATCAGCCTCTATATATTCAGATC 58.296 37.037 0.00 0.00 0.00 2.75
2820 8482 8.926374 CCAATCAGCCTCTATATATTCAGATCT 58.074 37.037 0.00 0.00 0.00 2.75
2850 8512 9.911788 ATGCTATTTAATACCCCTATGATCTTG 57.088 33.333 0.00 0.00 0.00 3.02
2851 8513 9.111519 TGCTATTTAATACCCCTATGATCTTGA 57.888 33.333 0.00 0.00 0.00 3.02
2852 8514 9.606631 GCTATTTAATACCCCTATGATCTTGAG 57.393 37.037 0.00 0.00 0.00 3.02
2853 8515 9.606631 CTATTTAATACCCCTATGATCTTGAGC 57.393 37.037 0.00 0.00 0.00 4.26
2854 8516 7.387265 TTTAATACCCCTATGATCTTGAGCA 57.613 36.000 0.00 0.00 0.00 4.26
2855 8517 7.574021 TTAATACCCCTATGATCTTGAGCAT 57.426 36.000 6.61 6.61 0.00 3.79
2856 8518 3.784511 ACCCCTATGATCTTGAGCATG 57.215 47.619 11.10 0.00 0.00 4.06
2857 8519 3.051581 ACCCCTATGATCTTGAGCATGT 58.948 45.455 11.10 0.00 0.00 3.21
2858 8520 3.461085 ACCCCTATGATCTTGAGCATGTT 59.539 43.478 11.10 0.00 0.00 2.71
2859 8521 4.079558 ACCCCTATGATCTTGAGCATGTTT 60.080 41.667 11.10 0.00 0.00 2.83
2860 8522 5.132648 ACCCCTATGATCTTGAGCATGTTTA 59.867 40.000 11.10 0.00 0.00 2.01
2861 8523 6.183361 ACCCCTATGATCTTGAGCATGTTTAT 60.183 38.462 11.10 0.00 0.00 1.40
2862 8524 6.373774 CCCCTATGATCTTGAGCATGTTTATC 59.626 42.308 11.10 0.00 0.00 1.75
2863 8525 6.938596 CCCTATGATCTTGAGCATGTTTATCA 59.061 38.462 11.10 0.00 0.00 2.15
2864 8526 7.610692 CCCTATGATCTTGAGCATGTTTATCAT 59.389 37.037 11.10 12.04 36.73 2.45
2865 8527 9.011095 CCTATGATCTTGAGCATGTTTATCATT 57.989 33.333 11.10 3.12 35.07 2.57
2868 8530 8.058667 TGATCTTGAGCATGTTTATCATTTGT 57.941 30.769 0.00 0.00 34.09 2.83
2869 8531 7.971722 TGATCTTGAGCATGTTTATCATTTGTG 59.028 33.333 0.00 0.00 34.09 3.33
2870 8532 7.451501 TCTTGAGCATGTTTATCATTTGTGA 57.548 32.000 0.00 0.00 34.09 3.58
2871 8533 7.532571 TCTTGAGCATGTTTATCATTTGTGAG 58.467 34.615 0.00 0.00 34.09 3.51
2872 8534 6.822667 TGAGCATGTTTATCATTTGTGAGT 57.177 33.333 0.00 0.00 34.09 3.41
2873 8535 7.920160 TGAGCATGTTTATCATTTGTGAGTA 57.080 32.000 0.00 0.00 34.09 2.59
2874 8536 7.977904 TGAGCATGTTTATCATTTGTGAGTAG 58.022 34.615 0.00 0.00 34.09 2.57
2875 8537 7.607607 TGAGCATGTTTATCATTTGTGAGTAGT 59.392 33.333 0.00 0.00 34.09 2.73
2876 8538 8.340618 AGCATGTTTATCATTTGTGAGTAGTT 57.659 30.769 0.00 0.00 34.09 2.24
2877 8539 9.448438 AGCATGTTTATCATTTGTGAGTAGTTA 57.552 29.630 0.00 0.00 34.09 2.24
2878 8540 9.490663 GCATGTTTATCATTTGTGAGTAGTTAC 57.509 33.333 0.00 0.00 34.09 2.50
2887 8549 9.391006 TCATTTGTGAGTAGTTACTTTTGTTCT 57.609 29.630 0.00 0.00 36.50 3.01
2890 8552 8.780846 TTGTGAGTAGTTACTTTTGTTCTTGA 57.219 30.769 0.00 0.00 36.50 3.02
2891 8553 8.420374 TGTGAGTAGTTACTTTTGTTCTTGAG 57.580 34.615 0.00 0.00 36.50 3.02
2892 8554 7.494625 TGTGAGTAGTTACTTTTGTTCTTGAGG 59.505 37.037 0.00 0.00 36.50 3.86
2893 8555 7.494952 GTGAGTAGTTACTTTTGTTCTTGAGGT 59.505 37.037 0.00 0.00 36.50 3.85
2894 8556 7.709613 TGAGTAGTTACTTTTGTTCTTGAGGTC 59.290 37.037 0.00 0.00 36.50 3.85
2895 8557 7.562135 AGTAGTTACTTTTGTTCTTGAGGTCA 58.438 34.615 0.00 0.00 31.13 4.02
2896 8558 8.211629 AGTAGTTACTTTTGTTCTTGAGGTCAT 58.788 33.333 0.00 0.00 31.13 3.06
2897 8559 7.264373 AGTTACTTTTGTTCTTGAGGTCATG 57.736 36.000 0.00 0.00 0.00 3.07
2898 8560 6.263168 AGTTACTTTTGTTCTTGAGGTCATGG 59.737 38.462 0.00 0.00 0.00 3.66
2899 8561 3.891366 ACTTTTGTTCTTGAGGTCATGGG 59.109 43.478 0.00 0.00 0.00 4.00
2900 8562 3.874383 TTTGTTCTTGAGGTCATGGGA 57.126 42.857 0.00 0.00 0.00 4.37
2901 8563 3.423539 TTGTTCTTGAGGTCATGGGAG 57.576 47.619 0.00 0.00 0.00 4.30
2902 8564 2.619931 TGTTCTTGAGGTCATGGGAGA 58.380 47.619 0.00 0.00 0.00 3.71
2903 8565 2.978978 TGTTCTTGAGGTCATGGGAGAA 59.021 45.455 0.00 0.00 0.00 2.87
2904 8566 3.394274 TGTTCTTGAGGTCATGGGAGAAA 59.606 43.478 0.00 0.00 0.00 2.52
2905 8567 4.043310 TGTTCTTGAGGTCATGGGAGAAAT 59.957 41.667 0.00 0.00 0.00 2.17
2906 8568 4.494091 TCTTGAGGTCATGGGAGAAATC 57.506 45.455 0.00 0.00 0.00 2.17
2907 8569 3.845992 TCTTGAGGTCATGGGAGAAATCA 59.154 43.478 0.00 0.00 0.00 2.57
2908 8570 4.476113 TCTTGAGGTCATGGGAGAAATCAT 59.524 41.667 0.00 0.00 0.00 2.45
2909 8571 4.160642 TGAGGTCATGGGAGAAATCATG 57.839 45.455 0.00 0.00 41.35 3.07
2910 8572 3.524789 TGAGGTCATGGGAGAAATCATGT 59.475 43.478 0.00 0.00 40.94 3.21
2911 8573 4.018141 TGAGGTCATGGGAGAAATCATGTT 60.018 41.667 0.00 0.00 40.94 2.71
2912 8574 4.275810 AGGTCATGGGAGAAATCATGTTG 58.724 43.478 0.00 0.00 40.94 3.33
2913 8575 3.181483 GGTCATGGGAGAAATCATGTTGC 60.181 47.826 0.00 0.00 40.94 4.17
2914 8576 3.444742 GTCATGGGAGAAATCATGTTGCA 59.555 43.478 0.00 0.00 40.94 4.08
2915 8577 3.697542 TCATGGGAGAAATCATGTTGCAG 59.302 43.478 0.00 0.00 40.94 4.41
2916 8578 2.449464 TGGGAGAAATCATGTTGCAGG 58.551 47.619 0.00 0.00 0.00 4.85
2917 8579 2.225091 TGGGAGAAATCATGTTGCAGGT 60.225 45.455 0.00 0.00 0.00 4.00
2918 8580 3.010027 TGGGAGAAATCATGTTGCAGGTA 59.990 43.478 0.00 0.00 0.00 3.08
2919 8581 4.016444 GGGAGAAATCATGTTGCAGGTAA 58.984 43.478 0.00 0.00 0.00 2.85
2920 8582 4.646492 GGGAGAAATCATGTTGCAGGTAAT 59.354 41.667 0.00 0.00 0.00 1.89
2921 8583 5.221126 GGGAGAAATCATGTTGCAGGTAATC 60.221 44.000 0.00 0.00 0.00 1.75
2922 8584 5.357878 GGAGAAATCATGTTGCAGGTAATCA 59.642 40.000 0.00 0.00 0.00 2.57
2923 8585 6.040166 GGAGAAATCATGTTGCAGGTAATCAT 59.960 38.462 0.00 0.00 0.00 2.45
2924 8586 6.802608 AGAAATCATGTTGCAGGTAATCATG 58.197 36.000 0.00 0.00 37.71 3.07
2925 8587 6.379133 AGAAATCATGTTGCAGGTAATCATGT 59.621 34.615 0.00 0.00 37.64 3.21
2926 8588 4.968812 TCATGTTGCAGGTAATCATGTG 57.031 40.909 0.00 0.00 37.64 3.21
2927 8589 4.587891 TCATGTTGCAGGTAATCATGTGA 58.412 39.130 0.00 0.00 37.64 3.58
2928 8590 5.008980 TCATGTTGCAGGTAATCATGTGAA 58.991 37.500 0.00 0.00 37.64 3.18
2929 8591 4.764679 TGTTGCAGGTAATCATGTGAAC 57.235 40.909 0.00 0.00 0.00 3.18
2930 8592 4.397420 TGTTGCAGGTAATCATGTGAACT 58.603 39.130 0.00 0.00 0.00 3.01
2931 8593 4.826733 TGTTGCAGGTAATCATGTGAACTT 59.173 37.500 0.00 0.00 0.00 2.66
2932 8594 5.156355 GTTGCAGGTAATCATGTGAACTTG 58.844 41.667 0.00 0.00 0.00 3.16
2933 8595 4.650734 TGCAGGTAATCATGTGAACTTGA 58.349 39.130 9.24 1.97 35.04 3.02
2934 8596 5.255687 TGCAGGTAATCATGTGAACTTGAT 58.744 37.500 6.11 6.11 40.92 2.57
2935 8597 6.413892 TGCAGGTAATCATGTGAACTTGATA 58.586 36.000 11.05 0.65 39.07 2.15
2936 8598 7.056006 TGCAGGTAATCATGTGAACTTGATAT 58.944 34.615 11.05 6.03 39.07 1.63
2937 8599 8.210265 TGCAGGTAATCATGTGAACTTGATATA 58.790 33.333 11.05 5.32 39.07 0.86
2938 8600 9.224267 GCAGGTAATCATGTGAACTTGATATAT 57.776 33.333 11.05 0.00 39.07 0.86
2980 8642 9.832445 AGTATGTATGTTGTTATTCCCTTAGTG 57.168 33.333 0.00 0.00 0.00 2.74
2981 8643 9.052759 GTATGTATGTTGTTATTCCCTTAGTGG 57.947 37.037 0.00 0.00 0.00 4.00
2982 8644 7.023171 TGTATGTTGTTATTCCCTTAGTGGT 57.977 36.000 0.00 0.00 0.00 4.16
2983 8645 6.882140 TGTATGTTGTTATTCCCTTAGTGGTG 59.118 38.462 0.00 0.00 0.00 4.17
2984 8646 5.313280 TGTTGTTATTCCCTTAGTGGTGT 57.687 39.130 0.00 0.00 0.00 4.16
2985 8647 5.310451 TGTTGTTATTCCCTTAGTGGTGTC 58.690 41.667 0.00 0.00 0.00 3.67
2986 8648 5.163184 TGTTGTTATTCCCTTAGTGGTGTCA 60.163 40.000 0.00 0.00 0.00 3.58
2987 8649 5.772393 TGTTATTCCCTTAGTGGTGTCAT 57.228 39.130 0.00 0.00 0.00 3.06
2988 8650 5.496556 TGTTATTCCCTTAGTGGTGTCATG 58.503 41.667 0.00 0.00 0.00 3.07
2989 8651 5.013704 TGTTATTCCCTTAGTGGTGTCATGT 59.986 40.000 0.00 0.00 0.00 3.21
2990 8652 3.417069 TTCCCTTAGTGGTGTCATGTG 57.583 47.619 0.00 0.00 0.00 3.21
2991 8653 1.003118 TCCCTTAGTGGTGTCATGTGC 59.997 52.381 0.00 0.00 0.00 4.57
2992 8654 1.271325 CCCTTAGTGGTGTCATGTGCA 60.271 52.381 0.00 0.00 0.00 4.57
2993 8655 1.806542 CCTTAGTGGTGTCATGTGCAC 59.193 52.381 10.75 10.75 36.22 4.57
2994 8656 1.460743 CTTAGTGGTGTCATGTGCACG 59.539 52.381 13.13 0.00 37.70 5.34
2995 8657 0.391228 TAGTGGTGTCATGTGCACGT 59.609 50.000 13.13 9.52 37.70 4.49
2996 8658 0.880278 AGTGGTGTCATGTGCACGTC 60.880 55.000 9.07 0.00 37.70 4.34
2997 8659 1.953642 TGGTGTCATGTGCACGTCG 60.954 57.895 9.07 5.41 37.70 5.12
2998 8660 1.663388 GGTGTCATGTGCACGTCGA 60.663 57.895 9.07 7.79 37.70 4.20
2999 8661 1.487231 GTGTCATGTGCACGTCGAC 59.513 57.895 23.47 23.47 0.00 4.20
3000 8662 0.939577 GTGTCATGTGCACGTCGACT 60.940 55.000 27.02 0.00 0.00 4.18
3001 8663 0.594110 TGTCATGTGCACGTCGACTA 59.406 50.000 27.02 17.66 0.00 2.59
3002 8664 0.982673 GTCATGTGCACGTCGACTAC 59.017 55.000 23.19 7.93 0.00 2.73
3003 8665 0.594110 TCATGTGCACGTCGACTACA 59.406 50.000 14.70 13.11 0.00 2.74
3004 8666 1.201414 TCATGTGCACGTCGACTACAT 59.799 47.619 14.70 14.66 32.60 2.29
3005 8667 1.321445 CATGTGCACGTCGACTACATG 59.679 52.381 24.15 24.15 41.54 3.21
3006 8668 0.594110 TGTGCACGTCGACTACATGA 59.406 50.000 14.70 0.00 0.00 3.07
3007 8669 0.982673 GTGCACGTCGACTACATGAC 59.017 55.000 14.70 0.00 0.00 3.06
3008 8670 0.594110 TGCACGTCGACTACATGACA 59.406 50.000 14.70 6.52 34.78 3.58
3009 8671 0.982673 GCACGTCGACTACATGACAC 59.017 55.000 14.70 0.00 34.78 3.67
3010 8672 1.401148 GCACGTCGACTACATGACACT 60.401 52.381 14.70 0.00 34.78 3.55
3011 8673 2.159612 GCACGTCGACTACATGACACTA 60.160 50.000 14.70 0.00 34.78 2.74
3012 8674 3.414464 CACGTCGACTACATGACACTAC 58.586 50.000 14.70 0.00 34.78 2.73
3013 8675 3.124806 CACGTCGACTACATGACACTACT 59.875 47.826 14.70 0.00 34.78 2.57
3014 8676 4.328169 CACGTCGACTACATGACACTACTA 59.672 45.833 14.70 0.00 34.78 1.82
3015 8677 4.328440 ACGTCGACTACATGACACTACTAC 59.672 45.833 14.70 0.00 34.78 2.73
3016 8678 4.328169 CGTCGACTACATGACACTACTACA 59.672 45.833 14.70 0.00 34.78 2.74
3017 8679 5.006455 CGTCGACTACATGACACTACTACAT 59.994 44.000 14.70 0.00 34.78 2.29
3018 8680 6.193060 GTCGACTACATGACACTACTACATG 58.807 44.000 8.70 0.00 44.42 3.21
3019 8681 6.036844 GTCGACTACATGACACTACTACATGA 59.963 42.308 8.70 0.00 42.41 3.07
3020 8682 6.036844 TCGACTACATGACACTACTACATGAC 59.963 42.308 12.24 2.30 42.41 3.06
3021 8683 6.183360 CGACTACATGACACTACTACATGACA 60.183 42.308 12.24 0.00 42.41 3.58
3022 8684 6.853720 ACTACATGACACTACTACATGACAC 58.146 40.000 12.24 0.00 42.41 3.67
3023 8685 5.984695 ACATGACACTACTACATGACACT 57.015 39.130 12.24 0.00 42.41 3.55
3024 8686 6.346477 ACATGACACTACTACATGACACTT 57.654 37.500 12.24 0.00 42.41 3.16
3025 8687 6.390721 ACATGACACTACTACATGACACTTC 58.609 40.000 12.24 0.00 42.41 3.01
3026 8688 6.015434 ACATGACACTACTACATGACACTTCA 60.015 38.462 12.24 0.00 42.41 3.02
3027 8689 5.769367 TGACACTACTACATGACACTTCAC 58.231 41.667 0.00 0.00 33.38 3.18
3028 8690 5.135508 ACACTACTACATGACACTTCACC 57.864 43.478 0.00 0.00 33.38 4.02
3029 8691 4.587262 ACACTACTACATGACACTTCACCA 59.413 41.667 0.00 0.00 33.38 4.17
3030 8692 5.246203 ACACTACTACATGACACTTCACCAT 59.754 40.000 0.00 0.00 33.38 3.55
3031 8693 6.436218 ACACTACTACATGACACTTCACCATA 59.564 38.462 0.00 0.00 33.38 2.74
3032 8694 7.124298 ACACTACTACATGACACTTCACCATAT 59.876 37.037 0.00 0.00 33.38 1.78
3033 8695 7.981789 CACTACTACATGACACTTCACCATATT 59.018 37.037 0.00 0.00 33.38 1.28
3034 8696 8.540388 ACTACTACATGACACTTCACCATATTT 58.460 33.333 0.00 0.00 33.38 1.40
3035 8697 7.615582 ACTACATGACACTTCACCATATTTG 57.384 36.000 0.00 0.00 33.38 2.32
3047 8709 3.611025 CCATATTTGGGCCTAAGGGAA 57.389 47.619 4.53 0.00 39.56 3.97
3048 8710 4.132122 CCATATTTGGGCCTAAGGGAAT 57.868 45.455 4.53 0.00 39.56 3.01
3049 8711 3.834231 CCATATTTGGGCCTAAGGGAATG 59.166 47.826 4.53 5.36 39.56 2.67
3050 8712 1.793414 ATTTGGGCCTAAGGGAATGC 58.207 50.000 4.53 0.00 33.58 3.56
3051 8713 0.411452 TTTGGGCCTAAGGGAATGCA 59.589 50.000 4.53 0.00 33.58 3.96
3052 8714 0.636101 TTGGGCCTAAGGGAATGCAT 59.364 50.000 4.53 0.00 33.58 3.96
3053 8715 0.636101 TGGGCCTAAGGGAATGCATT 59.364 50.000 12.83 12.83 33.58 3.56
3054 8716 1.856259 TGGGCCTAAGGGAATGCATTA 59.144 47.619 12.97 0.00 33.58 1.90
3055 8717 2.450500 TGGGCCTAAGGGAATGCATTAT 59.549 45.455 12.97 1.94 33.58 1.28
3056 8718 2.827921 GGGCCTAAGGGAATGCATTATG 59.172 50.000 12.97 0.00 33.58 1.90
3057 8719 2.827921 GGCCTAAGGGAATGCATTATGG 59.172 50.000 12.97 9.25 33.58 2.74
3058 8720 3.500289 GGCCTAAGGGAATGCATTATGGA 60.500 47.826 12.97 0.00 33.58 3.41
3059 8721 3.760684 GCCTAAGGGAATGCATTATGGAG 59.239 47.826 12.97 6.41 33.58 3.86
3060 8722 4.751028 GCCTAAGGGAATGCATTATGGAGT 60.751 45.833 12.97 0.00 33.58 3.85
3061 8723 5.514834 GCCTAAGGGAATGCATTATGGAGTA 60.515 44.000 12.97 0.00 33.58 2.59
3062 8724 6.176183 CCTAAGGGAATGCATTATGGAGTAG 58.824 44.000 12.97 9.14 33.58 2.57
3063 8725 4.026356 AGGGAATGCATTATGGAGTAGC 57.974 45.455 12.97 0.00 0.00 3.58
3064 8726 3.395607 AGGGAATGCATTATGGAGTAGCA 59.604 43.478 12.97 0.00 39.79 3.49
3065 8727 4.141181 AGGGAATGCATTATGGAGTAGCAA 60.141 41.667 12.97 0.00 38.85 3.91
3066 8728 4.768968 GGGAATGCATTATGGAGTAGCAAT 59.231 41.667 12.97 0.00 38.85 3.56
3067 8729 5.244626 GGGAATGCATTATGGAGTAGCAATT 59.755 40.000 12.97 0.00 38.85 2.32
3068 8730 6.434028 GGGAATGCATTATGGAGTAGCAATTA 59.566 38.462 12.97 0.00 38.85 1.40
3069 8731 7.362401 GGGAATGCATTATGGAGTAGCAATTAG 60.362 40.741 12.97 0.00 38.85 1.73
3070 8732 7.362401 GGAATGCATTATGGAGTAGCAATTAGG 60.362 40.741 12.97 0.00 38.85 2.69
3071 8733 5.940617 TGCATTATGGAGTAGCAATTAGGT 58.059 37.500 0.00 0.00 31.42 3.08
3072 8734 5.764686 TGCATTATGGAGTAGCAATTAGGTG 59.235 40.000 0.00 0.00 31.42 4.00
3073 8735 5.182001 GCATTATGGAGTAGCAATTAGGTGG 59.818 44.000 0.00 0.00 0.00 4.61
3074 8736 5.968676 TTATGGAGTAGCAATTAGGTGGT 57.031 39.130 0.00 0.00 0.00 4.16
3075 8737 3.627395 TGGAGTAGCAATTAGGTGGTG 57.373 47.619 0.00 0.00 0.00 4.17
3076 8738 2.238646 TGGAGTAGCAATTAGGTGGTGG 59.761 50.000 0.00 0.00 0.00 4.61
3077 8739 2.238898 GGAGTAGCAATTAGGTGGTGGT 59.761 50.000 0.00 0.00 0.00 4.16
3078 8740 3.308188 GGAGTAGCAATTAGGTGGTGGTT 60.308 47.826 0.00 0.00 0.00 3.67
3079 8741 3.686016 AGTAGCAATTAGGTGGTGGTTG 58.314 45.455 0.00 0.00 0.00 3.77
3080 8742 1.256812 AGCAATTAGGTGGTGGTTGC 58.743 50.000 0.00 0.00 43.97 4.17
3081 8743 0.965439 GCAATTAGGTGGTGGTTGCA 59.035 50.000 3.76 0.00 43.33 4.08
3082 8744 1.342819 GCAATTAGGTGGTGGTTGCAA 59.657 47.619 0.00 0.00 43.33 4.08
3083 8745 2.610232 GCAATTAGGTGGTGGTTGCAAG 60.610 50.000 0.00 0.00 43.33 4.01
3084 8746 2.890311 CAATTAGGTGGTGGTTGCAAGA 59.110 45.455 0.00 0.00 0.00 3.02
3085 8747 2.270352 TTAGGTGGTGGTTGCAAGAG 57.730 50.000 0.00 0.00 0.00 2.85
3086 8748 1.136828 TAGGTGGTGGTTGCAAGAGT 58.863 50.000 0.00 0.00 0.00 3.24
3087 8749 0.466189 AGGTGGTGGTTGCAAGAGTG 60.466 55.000 0.00 0.00 0.00 3.51
3088 8750 0.465460 GGTGGTGGTTGCAAGAGTGA 60.465 55.000 0.00 0.00 0.00 3.41
3089 8751 0.663153 GTGGTGGTTGCAAGAGTGAC 59.337 55.000 0.00 0.00 0.00 3.67
3090 8752 0.254462 TGGTGGTTGCAAGAGTGACA 59.746 50.000 0.00 0.00 0.00 3.58
3091 8753 0.947244 GGTGGTTGCAAGAGTGACAG 59.053 55.000 0.00 0.00 0.00 3.51
3092 8754 1.475034 GGTGGTTGCAAGAGTGACAGA 60.475 52.381 0.00 0.00 0.00 3.41
3093 8755 2.288666 GTGGTTGCAAGAGTGACAGAA 58.711 47.619 0.00 0.00 0.00 3.02
3094 8756 2.289002 GTGGTTGCAAGAGTGACAGAAG 59.711 50.000 0.00 0.00 0.00 2.85
3095 8757 1.265365 GGTTGCAAGAGTGACAGAAGC 59.735 52.381 0.00 0.00 0.00 3.86
3096 8758 2.216898 GTTGCAAGAGTGACAGAAGCT 58.783 47.619 0.00 0.00 0.00 3.74
3097 8759 2.615912 GTTGCAAGAGTGACAGAAGCTT 59.384 45.455 0.00 0.00 0.00 3.74
3098 8760 3.751479 TGCAAGAGTGACAGAAGCTTA 57.249 42.857 0.00 0.00 0.00 3.09
3099 8761 4.071961 TGCAAGAGTGACAGAAGCTTAA 57.928 40.909 0.00 0.00 0.00 1.85
3100 8762 4.450976 TGCAAGAGTGACAGAAGCTTAAA 58.549 39.130 0.00 0.00 0.00 1.52
3101 8763 4.273480 TGCAAGAGTGACAGAAGCTTAAAC 59.727 41.667 0.00 0.00 0.00 2.01
3102 8764 4.319839 GCAAGAGTGACAGAAGCTTAAACC 60.320 45.833 0.00 0.00 0.00 3.27
3103 8765 4.009370 AGAGTGACAGAAGCTTAAACCC 57.991 45.455 0.00 0.00 0.00 4.11
3104 8766 3.075148 GAGTGACAGAAGCTTAAACCCC 58.925 50.000 0.00 0.00 0.00 4.95
3105 8767 2.441750 AGTGACAGAAGCTTAAACCCCA 59.558 45.455 0.00 0.00 0.00 4.96
3106 8768 2.814336 GTGACAGAAGCTTAAACCCCAG 59.186 50.000 0.00 0.00 0.00 4.45
3107 8769 2.441750 TGACAGAAGCTTAAACCCCAGT 59.558 45.455 0.00 0.00 0.00 4.00
3108 8770 3.117663 TGACAGAAGCTTAAACCCCAGTT 60.118 43.478 0.00 0.00 38.03 3.16
3110 8772 5.056553 ACAGAAGCTTAAACCCCAGTTTA 57.943 39.130 0.00 0.00 44.44 2.01
3111 8773 5.641155 ACAGAAGCTTAAACCCCAGTTTAT 58.359 37.500 0.00 0.00 45.50 1.40
3112 8774 5.476945 ACAGAAGCTTAAACCCCAGTTTATG 59.523 40.000 0.00 3.88 45.50 1.90
3115 8777 3.145212 CTTAAACCCCAGTTTATGCGC 57.855 47.619 0.00 0.00 45.50 6.09
3116 8778 2.500392 TAAACCCCAGTTTATGCGCT 57.500 45.000 9.73 0.00 44.44 5.92
3117 8779 2.500392 AAACCCCAGTTTATGCGCTA 57.500 45.000 9.73 0.00 44.44 4.26
3118 8780 2.729028 AACCCCAGTTTATGCGCTAT 57.271 45.000 9.73 3.00 29.61 2.97
3119 8781 2.729028 ACCCCAGTTTATGCGCTATT 57.271 45.000 9.73 0.00 0.00 1.73
3120 8782 2.572290 ACCCCAGTTTATGCGCTATTC 58.428 47.619 9.73 0.00 0.00 1.75
3121 8783 1.880027 CCCCAGTTTATGCGCTATTCC 59.120 52.381 9.73 0.00 0.00 3.01
3122 8784 1.531149 CCCAGTTTATGCGCTATTCCG 59.469 52.381 9.73 0.00 0.00 4.30
3123 8785 2.210116 CCAGTTTATGCGCTATTCCGT 58.790 47.619 9.73 0.00 0.00 4.69
3124 8786 3.386486 CCAGTTTATGCGCTATTCCGTA 58.614 45.455 9.73 0.00 0.00 4.02
3125 8787 3.805422 CCAGTTTATGCGCTATTCCGTAA 59.195 43.478 9.73 0.00 0.00 3.18
3126 8788 4.084537 CCAGTTTATGCGCTATTCCGTAAG 60.085 45.833 9.73 0.00 0.00 2.34
3140 8802 2.150397 CGTAAGGGACCGATTGGATC 57.850 55.000 5.81 0.00 39.21 3.36
3141 8803 1.270147 CGTAAGGGACCGATTGGATCC 60.270 57.143 5.81 4.20 39.21 3.36
3142 8804 1.766496 GTAAGGGACCGATTGGATCCA 59.234 52.381 11.44 11.44 39.21 3.41
3143 8805 1.295020 AAGGGACCGATTGGATCCAA 58.705 50.000 28.92 28.92 40.47 3.53
3144 8806 1.295020 AGGGACCGATTGGATCCAAA 58.705 50.000 30.28 14.46 39.55 3.28
3145 8807 1.638589 AGGGACCGATTGGATCCAAAA 59.361 47.619 30.28 10.20 39.55 2.44
3146 8808 2.024414 GGGACCGATTGGATCCAAAAG 58.976 52.381 30.28 24.23 39.55 2.27
3147 8809 2.620627 GGGACCGATTGGATCCAAAAGT 60.621 50.000 30.28 24.98 39.55 2.66
3148 8810 3.089284 GGACCGATTGGATCCAAAAGTT 58.911 45.455 30.28 14.65 39.55 2.66
3149 8811 3.509967 GGACCGATTGGATCCAAAAGTTT 59.490 43.478 30.28 14.25 39.55 2.66
3150 8812 4.703093 GGACCGATTGGATCCAAAAGTTTA 59.297 41.667 30.28 6.90 39.55 2.01
3151 8813 5.184287 GGACCGATTGGATCCAAAAGTTTAA 59.816 40.000 30.28 6.08 39.55 1.52
3152 8814 6.127451 GGACCGATTGGATCCAAAAGTTTAAT 60.127 38.462 30.28 11.92 39.55 1.40
3153 8815 6.630071 ACCGATTGGATCCAAAAGTTTAATG 58.370 36.000 30.28 14.54 39.55 1.90
3154 8816 5.519927 CCGATTGGATCCAAAAGTTTAATGC 59.480 40.000 30.28 9.06 39.55 3.56
3155 8817 6.332630 CGATTGGATCCAAAAGTTTAATGCT 58.667 36.000 30.28 9.84 39.55 3.79
3156 8818 7.416213 CCGATTGGATCCAAAAGTTTAATGCTA 60.416 37.037 30.28 3.18 39.55 3.49
3157 8819 8.137437 CGATTGGATCCAAAAGTTTAATGCTAT 58.863 33.333 30.28 9.17 39.55 2.97
3158 8820 9.252962 GATTGGATCCAAAAGTTTAATGCTATG 57.747 33.333 30.28 0.00 39.55 2.23
3159 8821 7.111247 TGGATCCAAAAGTTTAATGCTATGG 57.889 36.000 13.46 0.00 0.00 2.74
3160 8822 6.667414 TGGATCCAAAAGTTTAATGCTATGGT 59.333 34.615 13.46 0.00 0.00 3.55
3161 8823 7.180051 TGGATCCAAAAGTTTAATGCTATGGTT 59.820 33.333 13.46 0.00 0.00 3.67
3162 8824 8.691797 GGATCCAAAAGTTTAATGCTATGGTTA 58.308 33.333 6.95 0.00 0.00 2.85
3163 8825 9.736023 GATCCAAAAGTTTAATGCTATGGTTAG 57.264 33.333 0.00 0.00 0.00 2.34
3164 8826 8.871629 TCCAAAAGTTTAATGCTATGGTTAGA 57.128 30.769 0.00 0.00 0.00 2.10
3165 8827 9.303116 TCCAAAAGTTTAATGCTATGGTTAGAA 57.697 29.630 0.00 0.00 0.00 2.10
3195 8857 7.502177 TCTTAATACTTTTCTCGTAGTTGCG 57.498 36.000 0.00 0.00 0.00 4.85
3196 8858 6.529125 TCTTAATACTTTTCTCGTAGTTGCGG 59.471 38.462 0.00 0.00 0.00 5.69
3197 8859 2.806608 ACTTTTCTCGTAGTTGCGGA 57.193 45.000 0.00 0.00 0.00 5.54
3198 8860 3.314541 ACTTTTCTCGTAGTTGCGGAT 57.685 42.857 0.00 0.00 0.00 4.18
3199 8861 2.993899 ACTTTTCTCGTAGTTGCGGATG 59.006 45.455 0.00 0.00 0.00 3.51
3200 8862 1.355971 TTTCTCGTAGTTGCGGATGC 58.644 50.000 0.00 0.00 43.20 3.91
3201 8863 0.530744 TTCTCGTAGTTGCGGATGCT 59.469 50.000 0.00 0.00 43.34 3.79
3202 8864 0.530744 TCTCGTAGTTGCGGATGCTT 59.469 50.000 0.00 0.00 43.34 3.91
3203 8865 0.647410 CTCGTAGTTGCGGATGCTTG 59.353 55.000 0.00 0.00 43.34 4.01
3204 8866 1.060937 CGTAGTTGCGGATGCTTGC 59.939 57.895 0.00 0.00 43.34 4.01
3205 8867 1.060937 GTAGTTGCGGATGCTTGCG 59.939 57.895 9.20 9.20 43.34 4.85
3206 8868 2.106074 TAGTTGCGGATGCTTGCGG 61.106 57.895 15.02 0.00 43.34 5.69
3207 8869 4.481112 GTTGCGGATGCTTGCGGG 62.481 66.667 15.02 0.00 43.34 6.13
3208 8870 4.713735 TTGCGGATGCTTGCGGGA 62.714 61.111 15.02 0.00 43.34 5.14
3227 8889 5.796424 GGGACGGTTAATCATAAGTAGGA 57.204 43.478 0.00 0.00 0.00 2.94
3228 8890 5.780984 GGGACGGTTAATCATAAGTAGGAG 58.219 45.833 0.00 0.00 0.00 3.69
3229 8891 5.279356 GGGACGGTTAATCATAAGTAGGAGG 60.279 48.000 0.00 0.00 0.00 4.30
3230 8892 5.303845 GGACGGTTAATCATAAGTAGGAGGT 59.696 44.000 0.00 0.00 0.00 3.85
3231 8893 6.183360 GGACGGTTAATCATAAGTAGGAGGTT 60.183 42.308 0.00 0.00 0.00 3.50
3232 8894 7.191593 ACGGTTAATCATAAGTAGGAGGTTT 57.808 36.000 0.00 0.00 0.00 3.27
3233 8895 7.270779 ACGGTTAATCATAAGTAGGAGGTTTC 58.729 38.462 0.00 0.00 0.00 2.78
3234 8896 7.125356 ACGGTTAATCATAAGTAGGAGGTTTCT 59.875 37.037 0.00 0.00 0.00 2.52
3235 8897 7.985752 CGGTTAATCATAAGTAGGAGGTTTCTT 59.014 37.037 0.00 0.00 0.00 2.52
3236 8898 9.327628 GGTTAATCATAAGTAGGAGGTTTCTTC 57.672 37.037 0.00 0.00 0.00 2.87
3237 8899 9.886132 GTTAATCATAAGTAGGAGGTTTCTTCA 57.114 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 3705 4.545610 CACATATTTTGAAGGCACACGTT 58.454 39.130 0.00 0.00 0.00 3.99
102 3778 5.748630 CGTGAATCTAAGATCGAAATCCACA 59.251 40.000 0.00 0.00 31.78 4.17
367 4046 3.552875 CATGGAACTCCTGCAGATGATT 58.447 45.455 17.39 3.59 36.82 2.57
654 4333 2.747989 GTGTACATCACTCTCTCGGTCA 59.252 50.000 0.00 0.00 43.13 4.02
729 4408 2.756760 AGCATCATTGTTCGCCAATCTT 59.243 40.909 0.00 0.00 41.93 2.40
760 4439 2.166907 ATGGTACTAGCACTGCTCCT 57.833 50.000 6.86 0.00 40.44 3.69
805 4484 3.634397 TGGAACTGCTAAATGAGGGAG 57.366 47.619 0.00 0.00 0.00 4.30
929 6313 0.258774 AGGGTTTCAGCACAACCAGT 59.741 50.000 12.32 0.00 45.00 4.00
933 6317 5.897377 ATATACAAGGGTTTCAGCACAAC 57.103 39.130 0.00 0.00 0.00 3.32
1028 6412 1.140589 CGAGAGCGAGCAACCTCAT 59.859 57.895 0.00 0.00 40.82 2.90
1092 6476 5.221342 CCTTTGCTTCTCGATATACCACTCT 60.221 44.000 0.00 0.00 0.00 3.24
1216 6602 5.063944 CCTTGAATGACCTAAAGTGTCGATG 59.936 44.000 0.00 0.00 35.46 3.84
1589 7224 9.462174 GCATATCAAATCAATAAATTGTCCGAA 57.538 29.630 2.80 0.00 38.84 4.30
1606 7241 9.853555 CTACAACATAAACCAAAGCATATCAAA 57.146 29.630 0.00 0.00 0.00 2.69
1645 7280 6.644347 ACTTGATGGAATGAGTAAGGTAGTG 58.356 40.000 0.00 0.00 0.00 2.74
1720 7355 6.484643 GCATCATTCACATCAATACCTAGTGT 59.515 38.462 0.00 0.00 0.00 3.55
1727 7362 6.788243 TCACTTGCATCATTCACATCAATAC 58.212 36.000 0.00 0.00 0.00 1.89
1863 7498 1.814394 TGCTTGCGCTTCAGATTTGAT 59.186 42.857 9.73 0.00 36.97 2.57
1889 7524 4.072131 TGGTTTCTTCTTATGTGGTGCTC 58.928 43.478 0.00 0.00 0.00 4.26
1923 7558 0.522180 CTAACACTCTGGCTCGACGT 59.478 55.000 0.00 0.00 0.00 4.34
2020 7655 4.365723 CAAAGATTGGCATTATGGTCTGC 58.634 43.478 0.00 0.00 37.66 4.26
2155 7790 5.514500 AGGACCCAAGCATTAAAAGTCTA 57.486 39.130 0.00 0.00 0.00 2.59
2214 7849 0.034863 TTGATGGATCAGCAGCTGCA 60.035 50.000 38.24 21.24 45.16 4.41
2466 8124 6.633500 AAAACATCATACATTATGGGACGG 57.367 37.500 0.00 0.00 36.81 4.79
2512 8170 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
2513 8171 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
2514 8172 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
2516 8174 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2517 8175 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2518 8176 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2519 8177 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2520 8178 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2521 8179 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2523 8181 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2524 8182 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2526 8184 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
2530 8189 5.228665 GCATAATTTACTACTCCCTCCGTC 58.771 45.833 0.00 0.00 0.00 4.79
2533 8192 4.349930 TGGGCATAATTTACTACTCCCTCC 59.650 45.833 0.00 0.00 33.77 4.30
2541 8200 7.018149 AGGTCATACCATGGGCATAATTTACTA 59.982 37.037 18.09 0.00 41.95 1.82
2788 8450 1.737838 TAGAGGCTGATTGGTTTGCG 58.262 50.000 0.00 0.00 0.00 4.85
2824 8486 9.911788 CAAGATCATAGGGGTATTAAATAGCAT 57.088 33.333 0.00 0.00 35.03 3.79
2825 8487 9.111519 TCAAGATCATAGGGGTATTAAATAGCA 57.888 33.333 0.00 0.00 35.03 3.49
2826 8488 9.606631 CTCAAGATCATAGGGGTATTAAATAGC 57.393 37.037 0.00 0.00 0.00 2.97
2827 8489 9.606631 GCTCAAGATCATAGGGGTATTAAATAG 57.393 37.037 0.00 0.00 0.00 1.73
2828 8490 9.111519 TGCTCAAGATCATAGGGGTATTAAATA 57.888 33.333 0.00 0.00 0.00 1.40
2829 8491 7.988937 TGCTCAAGATCATAGGGGTATTAAAT 58.011 34.615 0.00 0.00 0.00 1.40
2830 8492 7.387265 TGCTCAAGATCATAGGGGTATTAAA 57.613 36.000 0.00 0.00 0.00 1.52
2831 8493 7.017551 ACATGCTCAAGATCATAGGGGTATTAA 59.982 37.037 0.00 0.00 0.00 1.40
2832 8494 6.501805 ACATGCTCAAGATCATAGGGGTATTA 59.498 38.462 0.00 0.00 0.00 0.98
2833 8495 5.311649 ACATGCTCAAGATCATAGGGGTATT 59.688 40.000 0.00 0.00 0.00 1.89
2834 8496 4.848660 ACATGCTCAAGATCATAGGGGTAT 59.151 41.667 0.00 0.00 0.00 2.73
2835 8497 4.234550 ACATGCTCAAGATCATAGGGGTA 58.765 43.478 0.00 0.00 0.00 3.69
2836 8498 3.051581 ACATGCTCAAGATCATAGGGGT 58.948 45.455 0.00 0.00 0.00 4.95
2837 8499 3.784511 ACATGCTCAAGATCATAGGGG 57.215 47.619 0.00 0.00 0.00 4.79
2838 8500 6.938596 TGATAAACATGCTCAAGATCATAGGG 59.061 38.462 0.00 0.00 0.00 3.53
2839 8501 7.974482 TGATAAACATGCTCAAGATCATAGG 57.026 36.000 0.00 0.00 0.00 2.57
2842 8504 8.692710 ACAAATGATAAACATGCTCAAGATCAT 58.307 29.630 0.00 0.00 39.39 2.45
2843 8505 7.971722 CACAAATGATAAACATGCTCAAGATCA 59.028 33.333 0.00 0.00 39.39 2.92
2844 8506 8.186163 TCACAAATGATAAACATGCTCAAGATC 58.814 33.333 0.00 0.00 39.39 2.75
2845 8507 8.058667 TCACAAATGATAAACATGCTCAAGAT 57.941 30.769 0.00 0.00 39.39 2.40
2846 8508 7.175467 ACTCACAAATGATAAACATGCTCAAGA 59.825 33.333 0.00 0.00 39.39 3.02
2847 8509 7.310664 ACTCACAAATGATAAACATGCTCAAG 58.689 34.615 0.00 0.00 39.39 3.02
2848 8510 7.218228 ACTCACAAATGATAAACATGCTCAA 57.782 32.000 0.00 0.00 39.39 3.02
2849 8511 6.822667 ACTCACAAATGATAAACATGCTCA 57.177 33.333 0.00 0.00 39.39 4.26
2850 8512 7.978982 ACTACTCACAAATGATAAACATGCTC 58.021 34.615 0.00 0.00 39.39 4.26
2851 8513 7.928307 ACTACTCACAAATGATAAACATGCT 57.072 32.000 0.00 0.00 39.39 3.79
2852 8514 9.490663 GTAACTACTCACAAATGATAAACATGC 57.509 33.333 0.00 0.00 39.39 4.06
2861 8523 9.391006 AGAACAAAAGTAACTACTCACAAATGA 57.609 29.630 0.00 0.00 34.99 2.57
2864 8526 9.221933 TCAAGAACAAAAGTAACTACTCACAAA 57.778 29.630 0.00 0.00 34.99 2.83
2865 8527 8.780846 TCAAGAACAAAAGTAACTACTCACAA 57.219 30.769 0.00 0.00 34.99 3.33
2866 8528 7.494625 CCTCAAGAACAAAAGTAACTACTCACA 59.505 37.037 0.00 0.00 34.99 3.58
2867 8529 7.494952 ACCTCAAGAACAAAAGTAACTACTCAC 59.505 37.037 0.00 0.00 34.99 3.51
2868 8530 7.562135 ACCTCAAGAACAAAAGTAACTACTCA 58.438 34.615 0.00 0.00 34.99 3.41
2869 8531 7.709613 TGACCTCAAGAACAAAAGTAACTACTC 59.290 37.037 0.00 0.00 34.99 2.59
2870 8532 7.562135 TGACCTCAAGAACAAAAGTAACTACT 58.438 34.615 0.00 0.00 38.39 2.57
2871 8533 7.781548 TGACCTCAAGAACAAAAGTAACTAC 57.218 36.000 0.00 0.00 0.00 2.73
2872 8534 7.444183 CCATGACCTCAAGAACAAAAGTAACTA 59.556 37.037 0.00 0.00 0.00 2.24
2873 8535 6.263168 CCATGACCTCAAGAACAAAAGTAACT 59.737 38.462 0.00 0.00 0.00 2.24
2874 8536 6.438763 CCATGACCTCAAGAACAAAAGTAAC 58.561 40.000 0.00 0.00 0.00 2.50
2875 8537 5.534654 CCCATGACCTCAAGAACAAAAGTAA 59.465 40.000 0.00 0.00 0.00 2.24
2876 8538 5.070001 CCCATGACCTCAAGAACAAAAGTA 58.930 41.667 0.00 0.00 0.00 2.24
2877 8539 3.891366 CCCATGACCTCAAGAACAAAAGT 59.109 43.478 0.00 0.00 0.00 2.66
2878 8540 4.144297 TCCCATGACCTCAAGAACAAAAG 58.856 43.478 0.00 0.00 0.00 2.27
2879 8541 4.141274 TCTCCCATGACCTCAAGAACAAAA 60.141 41.667 0.00 0.00 0.00 2.44
2880 8542 3.394274 TCTCCCATGACCTCAAGAACAAA 59.606 43.478 0.00 0.00 0.00 2.83
2881 8543 2.978978 TCTCCCATGACCTCAAGAACAA 59.021 45.455 0.00 0.00 0.00 2.83
2882 8544 2.619931 TCTCCCATGACCTCAAGAACA 58.380 47.619 0.00 0.00 0.00 3.18
2883 8545 3.703001 TTCTCCCATGACCTCAAGAAC 57.297 47.619 0.00 0.00 0.00 3.01
2884 8546 4.289410 TGATTTCTCCCATGACCTCAAGAA 59.711 41.667 0.00 0.00 0.00 2.52
2885 8547 3.845992 TGATTTCTCCCATGACCTCAAGA 59.154 43.478 0.00 0.00 0.00 3.02
2886 8548 4.226427 TGATTTCTCCCATGACCTCAAG 57.774 45.455 0.00 0.00 0.00 3.02
2887 8549 4.018141 ACATGATTTCTCCCATGACCTCAA 60.018 41.667 0.00 0.00 41.88 3.02
2888 8550 3.524789 ACATGATTTCTCCCATGACCTCA 59.475 43.478 0.00 0.00 41.88 3.86
2889 8551 4.162040 ACATGATTTCTCCCATGACCTC 57.838 45.455 0.00 0.00 41.88 3.85
2890 8552 4.275810 CAACATGATTTCTCCCATGACCT 58.724 43.478 0.00 0.00 41.88 3.85
2891 8553 3.181483 GCAACATGATTTCTCCCATGACC 60.181 47.826 0.00 0.00 41.88 4.02
2892 8554 3.444742 TGCAACATGATTTCTCCCATGAC 59.555 43.478 0.00 0.35 41.88 3.06
2893 8555 3.697542 CTGCAACATGATTTCTCCCATGA 59.302 43.478 0.00 0.00 41.88 3.07
2894 8556 3.181479 CCTGCAACATGATTTCTCCCATG 60.181 47.826 0.00 0.00 44.12 3.66
2895 8557 3.028850 CCTGCAACATGATTTCTCCCAT 58.971 45.455 0.00 0.00 0.00 4.00
2896 8558 2.225091 ACCTGCAACATGATTTCTCCCA 60.225 45.455 0.00 0.00 0.00 4.37
2897 8559 2.450476 ACCTGCAACATGATTTCTCCC 58.550 47.619 0.00 0.00 0.00 4.30
2898 8560 5.357878 TGATTACCTGCAACATGATTTCTCC 59.642 40.000 0.00 0.00 0.00 3.71
2899 8561 6.441093 TGATTACCTGCAACATGATTTCTC 57.559 37.500 0.00 0.00 0.00 2.87
2900 8562 6.379133 ACATGATTACCTGCAACATGATTTCT 59.621 34.615 0.00 0.00 40.13 2.52
2901 8563 6.474427 CACATGATTACCTGCAACATGATTTC 59.526 38.462 0.00 0.00 40.13 2.17
2902 8564 6.153170 TCACATGATTACCTGCAACATGATTT 59.847 34.615 0.00 0.00 40.13 2.17
2903 8565 5.653330 TCACATGATTACCTGCAACATGATT 59.347 36.000 0.00 0.00 40.13 2.57
2904 8566 5.195185 TCACATGATTACCTGCAACATGAT 58.805 37.500 0.00 0.00 40.13 2.45
2905 8567 4.587891 TCACATGATTACCTGCAACATGA 58.412 39.130 0.00 0.00 40.13 3.07
2906 8568 4.968812 TCACATGATTACCTGCAACATG 57.031 40.909 0.00 0.00 42.37 3.21
2907 8569 5.012239 AGTTCACATGATTACCTGCAACAT 58.988 37.500 0.00 0.00 0.00 2.71
2908 8570 4.397420 AGTTCACATGATTACCTGCAACA 58.603 39.130 0.00 0.00 0.00 3.33
2909 8571 5.048782 TCAAGTTCACATGATTACCTGCAAC 60.049 40.000 0.00 0.00 0.00 4.17
2910 8572 5.069318 TCAAGTTCACATGATTACCTGCAA 58.931 37.500 0.00 0.00 0.00 4.08
2911 8573 4.650734 TCAAGTTCACATGATTACCTGCA 58.349 39.130 0.00 0.00 0.00 4.41
2912 8574 5.824904 ATCAAGTTCACATGATTACCTGC 57.175 39.130 0.00 0.00 31.04 4.85
2954 8616 9.832445 CACTAAGGGAATAACAACATACATACT 57.168 33.333 0.00 0.00 0.00 2.12
2955 8617 9.052759 CCACTAAGGGAATAACAACATACATAC 57.947 37.037 0.00 0.00 0.00 2.39
2956 8618 8.774183 ACCACTAAGGGAATAACAACATACATA 58.226 33.333 0.00 0.00 43.89 2.29
2957 8619 7.556275 CACCACTAAGGGAATAACAACATACAT 59.444 37.037 0.00 0.00 43.89 2.29
2958 8620 6.882140 CACCACTAAGGGAATAACAACATACA 59.118 38.462 0.00 0.00 43.89 2.29
2959 8621 6.882678 ACACCACTAAGGGAATAACAACATAC 59.117 38.462 0.00 0.00 43.89 2.39
2960 8622 7.023171 ACACCACTAAGGGAATAACAACATA 57.977 36.000 0.00 0.00 43.89 2.29
2961 8623 5.887754 ACACCACTAAGGGAATAACAACAT 58.112 37.500 0.00 0.00 43.89 2.71
2962 8624 5.163184 TGACACCACTAAGGGAATAACAACA 60.163 40.000 0.00 0.00 43.89 3.33
2963 8625 5.310451 TGACACCACTAAGGGAATAACAAC 58.690 41.667 0.00 0.00 43.89 3.32
2964 8626 5.570205 TGACACCACTAAGGGAATAACAA 57.430 39.130 0.00 0.00 43.89 2.83
2965 8627 5.013704 ACATGACACCACTAAGGGAATAACA 59.986 40.000 0.00 0.00 43.89 2.41
2966 8628 5.354234 CACATGACACCACTAAGGGAATAAC 59.646 44.000 0.00 0.00 43.89 1.89
2967 8629 5.496556 CACATGACACCACTAAGGGAATAA 58.503 41.667 0.00 0.00 43.89 1.40
2968 8630 4.625324 GCACATGACACCACTAAGGGAATA 60.625 45.833 0.00 0.00 43.89 1.75
2969 8631 3.873801 GCACATGACACCACTAAGGGAAT 60.874 47.826 0.00 0.00 43.89 3.01
2970 8632 2.552155 GCACATGACACCACTAAGGGAA 60.552 50.000 0.00 0.00 43.89 3.97
2971 8633 1.003118 GCACATGACACCACTAAGGGA 59.997 52.381 0.00 0.00 43.89 4.20
2972 8634 1.271325 TGCACATGACACCACTAAGGG 60.271 52.381 0.00 0.00 43.89 3.95
2973 8635 1.806542 GTGCACATGACACCACTAAGG 59.193 52.381 13.17 0.00 45.67 2.69
2974 8636 1.460743 CGTGCACATGACACCACTAAG 59.539 52.381 18.64 0.00 34.45 2.18
2975 8637 1.202592 ACGTGCACATGACACCACTAA 60.203 47.619 18.64 0.00 34.45 2.24
2976 8638 0.391228 ACGTGCACATGACACCACTA 59.609 50.000 18.64 0.00 34.45 2.74
2977 8639 0.880278 GACGTGCACATGACACCACT 60.880 55.000 18.64 2.05 34.45 4.00
2978 8640 1.569493 GACGTGCACATGACACCAC 59.431 57.895 18.64 8.26 34.45 4.16
2979 8641 1.953642 CGACGTGCACATGACACCA 60.954 57.895 18.64 0.00 34.45 4.17
2980 8642 1.663388 TCGACGTGCACATGACACC 60.663 57.895 18.64 4.68 34.45 4.16
2981 8643 0.939577 AGTCGACGTGCACATGACAC 60.940 55.000 25.61 13.07 34.62 3.67
2982 8644 0.594110 TAGTCGACGTGCACATGACA 59.406 50.000 25.61 14.28 32.08 3.58
2983 8645 0.982673 GTAGTCGACGTGCACATGAC 59.017 55.000 18.64 19.31 0.00 3.06
2984 8646 0.594110 TGTAGTCGACGTGCACATGA 59.406 50.000 18.64 8.13 0.00 3.07
2985 8647 1.321445 CATGTAGTCGACGTGCACATG 59.679 52.381 26.11 26.11 38.23 3.21
2986 8648 1.201414 TCATGTAGTCGACGTGCACAT 59.799 47.619 18.64 14.61 43.72 3.21
2987 8649 0.594110 TCATGTAGTCGACGTGCACA 59.406 50.000 18.64 13.01 43.72 4.57
2988 8650 0.982673 GTCATGTAGTCGACGTGCAC 59.017 55.000 10.46 6.82 43.72 4.57
2989 8651 0.594110 TGTCATGTAGTCGACGTGCA 59.406 50.000 10.46 10.78 43.72 4.57
2990 8652 0.982673 GTGTCATGTAGTCGACGTGC 59.017 55.000 10.46 5.05 43.72 5.34
2991 8653 2.613730 AGTGTCATGTAGTCGACGTG 57.386 50.000 10.46 8.28 45.18 4.49
2992 8654 3.332919 AGTAGTGTCATGTAGTCGACGT 58.667 45.455 10.46 1.19 34.78 4.34
2993 8655 4.328169 TGTAGTAGTGTCATGTAGTCGACG 59.672 45.833 10.46 0.00 34.78 5.12
2994 8656 5.791367 TGTAGTAGTGTCATGTAGTCGAC 57.209 43.478 7.70 7.70 0.00 4.20
2995 8657 6.036844 GTCATGTAGTAGTGTCATGTAGTCGA 59.963 42.308 13.45 0.00 39.61 4.20
2996 8658 6.183360 TGTCATGTAGTAGTGTCATGTAGTCG 60.183 42.308 13.45 0.00 39.61 4.18
2997 8659 6.967767 GTGTCATGTAGTAGTGTCATGTAGTC 59.032 42.308 13.45 7.19 39.61 2.59
2998 8660 6.659668 AGTGTCATGTAGTAGTGTCATGTAGT 59.340 38.462 13.45 7.58 39.61 2.73
2999 8661 7.089770 AGTGTCATGTAGTAGTGTCATGTAG 57.910 40.000 13.45 0.00 39.61 2.74
3000 8662 7.175990 TGAAGTGTCATGTAGTAGTGTCATGTA 59.824 37.037 13.45 5.82 39.61 2.29
3001 8663 5.984695 AGTGTCATGTAGTAGTGTCATGT 57.015 39.130 13.45 0.00 39.61 3.21
3002 8664 6.309009 GTGAAGTGTCATGTAGTAGTGTCATG 59.691 42.308 9.74 9.74 39.87 3.07
3003 8665 6.390721 GTGAAGTGTCATGTAGTAGTGTCAT 58.609 40.000 0.00 0.00 35.80 3.06
3004 8666 5.278808 GGTGAAGTGTCATGTAGTAGTGTCA 60.279 44.000 0.00 0.00 35.80 3.58
3005 8667 5.162075 GGTGAAGTGTCATGTAGTAGTGTC 58.838 45.833 0.00 0.00 35.80 3.67
3006 8668 4.587262 TGGTGAAGTGTCATGTAGTAGTGT 59.413 41.667 0.00 0.00 35.80 3.55
3007 8669 5.134202 TGGTGAAGTGTCATGTAGTAGTG 57.866 43.478 0.00 0.00 35.80 2.74
3008 8670 7.661536 ATATGGTGAAGTGTCATGTAGTAGT 57.338 36.000 0.00 0.00 35.80 2.73
3009 8671 8.820933 CAAATATGGTGAAGTGTCATGTAGTAG 58.179 37.037 0.00 0.00 35.80 2.57
3010 8672 7.768582 CCAAATATGGTGAAGTGTCATGTAGTA 59.231 37.037 0.00 0.00 42.18 1.82
3011 8673 6.599244 CCAAATATGGTGAAGTGTCATGTAGT 59.401 38.462 0.00 0.00 42.18 2.73
3012 8674 6.038603 CCCAAATATGGTGAAGTGTCATGTAG 59.961 42.308 0.00 0.00 46.01 2.74
3013 8675 5.885352 CCCAAATATGGTGAAGTGTCATGTA 59.115 40.000 0.00 0.00 46.01 2.29
3014 8676 4.706476 CCCAAATATGGTGAAGTGTCATGT 59.294 41.667 0.00 0.00 46.01 3.21
3015 8677 4.440525 GCCCAAATATGGTGAAGTGTCATG 60.441 45.833 0.00 0.00 46.01 3.07
3016 8678 3.701040 GCCCAAATATGGTGAAGTGTCAT 59.299 43.478 0.00 0.00 46.01 3.06
3017 8679 3.088532 GCCCAAATATGGTGAAGTGTCA 58.911 45.455 0.00 0.00 46.01 3.58
3018 8680 2.427095 GGCCCAAATATGGTGAAGTGTC 59.573 50.000 0.00 0.00 46.01 3.67
3019 8681 2.042979 AGGCCCAAATATGGTGAAGTGT 59.957 45.455 0.00 0.00 46.01 3.55
3020 8682 2.738743 AGGCCCAAATATGGTGAAGTG 58.261 47.619 0.00 0.00 46.01 3.16
3021 8683 4.536765 CTTAGGCCCAAATATGGTGAAGT 58.463 43.478 0.00 0.00 46.01 3.01
3022 8684 3.891366 CCTTAGGCCCAAATATGGTGAAG 59.109 47.826 0.00 0.00 46.01 3.02
3023 8685 3.373658 CCCTTAGGCCCAAATATGGTGAA 60.374 47.826 0.00 0.00 46.01 3.18
3024 8686 2.176798 CCCTTAGGCCCAAATATGGTGA 59.823 50.000 0.00 0.00 46.01 4.02
3025 8687 2.176798 TCCCTTAGGCCCAAATATGGTG 59.823 50.000 0.00 0.00 46.01 4.17
3026 8688 2.509243 TCCCTTAGGCCCAAATATGGT 58.491 47.619 0.00 0.00 46.01 3.55
3028 8690 3.259123 GCATTCCCTTAGGCCCAAATATG 59.741 47.826 0.00 0.00 0.00 1.78
3029 8691 3.116784 TGCATTCCCTTAGGCCCAAATAT 60.117 43.478 0.00 0.00 0.00 1.28
3030 8692 2.246067 TGCATTCCCTTAGGCCCAAATA 59.754 45.455 0.00 0.00 0.00 1.40
3031 8693 1.008206 TGCATTCCCTTAGGCCCAAAT 59.992 47.619 0.00 0.00 0.00 2.32
3032 8694 0.411452 TGCATTCCCTTAGGCCCAAA 59.589 50.000 0.00 0.00 0.00 3.28
3033 8695 0.636101 ATGCATTCCCTTAGGCCCAA 59.364 50.000 0.00 0.00 0.00 4.12
3034 8696 0.636101 AATGCATTCCCTTAGGCCCA 59.364 50.000 5.99 0.00 0.00 5.36
3035 8697 2.675658 TAATGCATTCCCTTAGGCCC 57.324 50.000 16.86 0.00 0.00 5.80
3036 8698 2.827921 CCATAATGCATTCCCTTAGGCC 59.172 50.000 16.86 0.00 0.00 5.19
3037 8699 3.760684 CTCCATAATGCATTCCCTTAGGC 59.239 47.826 16.86 0.00 0.00 3.93
3038 8700 4.990526 ACTCCATAATGCATTCCCTTAGG 58.009 43.478 16.86 9.86 0.00 2.69
3039 8701 5.645497 GCTACTCCATAATGCATTCCCTTAG 59.355 44.000 16.86 10.64 0.00 2.18
3040 8702 5.073008 TGCTACTCCATAATGCATTCCCTTA 59.927 40.000 16.86 0.00 0.00 2.69
3041 8703 4.141181 TGCTACTCCATAATGCATTCCCTT 60.141 41.667 16.86 0.00 0.00 3.95
3042 8704 3.395607 TGCTACTCCATAATGCATTCCCT 59.604 43.478 16.86 0.00 0.00 4.20
3043 8705 3.754965 TGCTACTCCATAATGCATTCCC 58.245 45.455 16.86 0.00 0.00 3.97
3044 8706 5.972107 ATTGCTACTCCATAATGCATTCC 57.028 39.130 16.86 0.00 33.50 3.01
3045 8707 7.175641 ACCTAATTGCTACTCCATAATGCATTC 59.824 37.037 16.86 0.00 33.50 2.67
3046 8708 7.006509 ACCTAATTGCTACTCCATAATGCATT 58.993 34.615 17.56 17.56 33.50 3.56
3047 8709 6.432162 CACCTAATTGCTACTCCATAATGCAT 59.568 38.462 0.00 0.00 33.50 3.96
3048 8710 5.764686 CACCTAATTGCTACTCCATAATGCA 59.235 40.000 0.00 0.00 0.00 3.96
3049 8711 5.182001 CCACCTAATTGCTACTCCATAATGC 59.818 44.000 0.00 0.00 0.00 3.56
3050 8712 6.205464 CACCACCTAATTGCTACTCCATAATG 59.795 42.308 0.00 0.00 0.00 1.90
3051 8713 6.299141 CACCACCTAATTGCTACTCCATAAT 58.701 40.000 0.00 0.00 0.00 1.28
3052 8714 5.397447 CCACCACCTAATTGCTACTCCATAA 60.397 44.000 0.00 0.00 0.00 1.90
3053 8715 4.102524 CCACCACCTAATTGCTACTCCATA 59.897 45.833 0.00 0.00 0.00 2.74
3054 8716 3.117888 CCACCACCTAATTGCTACTCCAT 60.118 47.826 0.00 0.00 0.00 3.41
3055 8717 2.238646 CCACCACCTAATTGCTACTCCA 59.761 50.000 0.00 0.00 0.00 3.86
3056 8718 2.238898 ACCACCACCTAATTGCTACTCC 59.761 50.000 0.00 0.00 0.00 3.85
3057 8719 3.629142 ACCACCACCTAATTGCTACTC 57.371 47.619 0.00 0.00 0.00 2.59
3058 8720 3.686016 CAACCACCACCTAATTGCTACT 58.314 45.455 0.00 0.00 0.00 2.57
3059 8721 2.163613 GCAACCACCACCTAATTGCTAC 59.836 50.000 0.00 0.00 41.88 3.58
3060 8722 2.224892 TGCAACCACCACCTAATTGCTA 60.225 45.455 8.54 0.00 44.69 3.49
3061 8723 1.256812 GCAACCACCACCTAATTGCT 58.743 50.000 0.00 0.00 41.88 3.91
3062 8724 0.965439 TGCAACCACCACCTAATTGC 59.035 50.000 0.00 0.00 44.66 3.56
3063 8725 2.890311 TCTTGCAACCACCACCTAATTG 59.110 45.455 0.00 0.00 0.00 2.32
3064 8726 3.157087 CTCTTGCAACCACCACCTAATT 58.843 45.455 0.00 0.00 0.00 1.40
3065 8727 2.108250 ACTCTTGCAACCACCACCTAAT 59.892 45.455 0.00 0.00 0.00 1.73
3066 8728 1.493022 ACTCTTGCAACCACCACCTAA 59.507 47.619 0.00 0.00 0.00 2.69
3067 8729 1.136828 ACTCTTGCAACCACCACCTA 58.863 50.000 0.00 0.00 0.00 3.08
3068 8730 0.466189 CACTCTTGCAACCACCACCT 60.466 55.000 0.00 0.00 0.00 4.00
3069 8731 0.465460 TCACTCTTGCAACCACCACC 60.465 55.000 0.00 0.00 0.00 4.61
3070 8732 0.663153 GTCACTCTTGCAACCACCAC 59.337 55.000 0.00 0.00 0.00 4.16
3071 8733 0.254462 TGTCACTCTTGCAACCACCA 59.746 50.000 0.00 0.00 0.00 4.17
3072 8734 0.947244 CTGTCACTCTTGCAACCACC 59.053 55.000 0.00 0.00 0.00 4.61
3073 8735 1.953559 TCTGTCACTCTTGCAACCAC 58.046 50.000 0.00 0.00 0.00 4.16
3074 8736 2.564771 CTTCTGTCACTCTTGCAACCA 58.435 47.619 0.00 0.00 0.00 3.67
3075 8737 1.265365 GCTTCTGTCACTCTTGCAACC 59.735 52.381 0.00 0.00 0.00 3.77
3076 8738 2.216898 AGCTTCTGTCACTCTTGCAAC 58.783 47.619 0.00 0.00 0.00 4.17
3077 8739 2.627515 AGCTTCTGTCACTCTTGCAA 57.372 45.000 0.00 0.00 0.00 4.08
3078 8740 2.627515 AAGCTTCTGTCACTCTTGCA 57.372 45.000 0.00 0.00 0.00 4.08
3079 8741 4.319839 GGTTTAAGCTTCTGTCACTCTTGC 60.320 45.833 0.00 0.00 0.00 4.01
3080 8742 4.214332 GGGTTTAAGCTTCTGTCACTCTTG 59.786 45.833 0.00 0.00 0.00 3.02
3081 8743 4.390264 GGGTTTAAGCTTCTGTCACTCTT 58.610 43.478 0.00 0.00 0.00 2.85
3082 8744 3.244596 GGGGTTTAAGCTTCTGTCACTCT 60.245 47.826 0.00 0.00 0.00 3.24
3083 8745 3.075148 GGGGTTTAAGCTTCTGTCACTC 58.925 50.000 0.00 0.00 0.00 3.51
3084 8746 2.441750 TGGGGTTTAAGCTTCTGTCACT 59.558 45.455 0.00 0.00 0.00 3.41
3085 8747 2.814336 CTGGGGTTTAAGCTTCTGTCAC 59.186 50.000 0.00 0.00 0.00 3.67
3086 8748 2.441750 ACTGGGGTTTAAGCTTCTGTCA 59.558 45.455 0.00 0.00 0.00 3.58
3087 8749 3.141767 ACTGGGGTTTAAGCTTCTGTC 57.858 47.619 0.00 0.00 0.00 3.51
3088 8750 3.595190 AACTGGGGTTTAAGCTTCTGT 57.405 42.857 0.00 0.00 30.55 3.41
3089 8751 5.954335 CATAAACTGGGGTTTAAGCTTCTG 58.046 41.667 0.00 0.00 46.64 3.02
3095 8757 2.752903 AGCGCATAAACTGGGGTTTAAG 59.247 45.455 11.47 3.31 46.64 1.85
3096 8758 2.797786 AGCGCATAAACTGGGGTTTAA 58.202 42.857 11.47 0.00 46.64 1.52
3097 8759 2.500392 AGCGCATAAACTGGGGTTTA 57.500 45.000 11.47 4.23 45.17 2.01
3098 8760 2.500392 TAGCGCATAAACTGGGGTTT 57.500 45.000 11.47 0.00 45.17 3.27
3099 8761 2.729028 ATAGCGCATAAACTGGGGTT 57.271 45.000 11.47 0.00 45.17 4.11
3101 8763 1.880027 GGAATAGCGCATAAACTGGGG 59.120 52.381 11.47 0.00 38.22 4.96
3102 8764 1.531149 CGGAATAGCGCATAAACTGGG 59.469 52.381 11.47 0.00 40.65 4.45
3103 8765 2.210116 ACGGAATAGCGCATAAACTGG 58.790 47.619 11.47 0.00 0.00 4.00
3104 8766 4.084537 CCTTACGGAATAGCGCATAAACTG 60.085 45.833 11.47 4.52 0.00 3.16
3105 8767 4.056050 CCTTACGGAATAGCGCATAAACT 58.944 43.478 11.47 0.00 0.00 2.66
3106 8768 3.185797 CCCTTACGGAATAGCGCATAAAC 59.814 47.826 11.47 0.00 0.00 2.01
3107 8769 3.069872 TCCCTTACGGAATAGCGCATAAA 59.930 43.478 11.47 0.00 37.88 1.40
3108 8770 2.629137 TCCCTTACGGAATAGCGCATAA 59.371 45.455 11.47 0.00 37.88 1.90
3109 8771 2.029649 GTCCCTTACGGAATAGCGCATA 60.030 50.000 11.47 0.00 44.47 3.14
3110 8772 1.045407 TCCCTTACGGAATAGCGCAT 58.955 50.000 11.47 0.00 37.88 4.73
3111 8773 0.103572 GTCCCTTACGGAATAGCGCA 59.896 55.000 11.47 0.00 44.47 6.09
3112 8774 0.599466 GGTCCCTTACGGAATAGCGC 60.599 60.000 0.00 0.00 44.47 5.92
3113 8775 0.318445 CGGTCCCTTACGGAATAGCG 60.318 60.000 0.00 0.00 44.47 4.26
3114 8776 1.035139 TCGGTCCCTTACGGAATAGC 58.965 55.000 0.00 0.00 44.47 2.97
3115 8777 3.554337 CCAATCGGTCCCTTACGGAATAG 60.554 52.174 0.00 0.00 44.47 1.73
3116 8778 2.366266 CCAATCGGTCCCTTACGGAATA 59.634 50.000 0.00 0.00 44.47 1.75
3117 8779 1.140252 CCAATCGGTCCCTTACGGAAT 59.860 52.381 0.00 0.00 44.47 3.01
3118 8780 0.538118 CCAATCGGTCCCTTACGGAA 59.462 55.000 0.00 0.00 44.47 4.30
3119 8781 0.324552 TCCAATCGGTCCCTTACGGA 60.325 55.000 0.00 0.00 41.17 4.69
3120 8782 0.756903 ATCCAATCGGTCCCTTACGG 59.243 55.000 0.00 0.00 0.00 4.02
3121 8783 1.270147 GGATCCAATCGGTCCCTTACG 60.270 57.143 6.95 0.00 30.38 3.18
3122 8784 1.766496 TGGATCCAATCGGTCCCTTAC 59.234 52.381 13.46 0.00 33.72 2.34
3123 8785 2.184088 TGGATCCAATCGGTCCCTTA 57.816 50.000 13.46 0.00 33.72 2.69
3124 8786 1.295020 TTGGATCCAATCGGTCCCTT 58.705 50.000 23.63 0.00 33.72 3.95
3125 8787 1.295020 TTTGGATCCAATCGGTCCCT 58.705 50.000 27.53 0.00 35.70 4.20
3126 8788 2.024414 CTTTTGGATCCAATCGGTCCC 58.976 52.381 27.53 0.00 35.70 4.46
3127 8789 2.723273 ACTTTTGGATCCAATCGGTCC 58.277 47.619 27.53 0.00 35.70 4.46
3128 8790 4.783764 AAACTTTTGGATCCAATCGGTC 57.216 40.909 27.53 0.00 35.70 4.79
3129 8791 6.630071 CATTAAACTTTTGGATCCAATCGGT 58.370 36.000 27.53 21.06 35.70 4.69
3130 8792 5.519927 GCATTAAACTTTTGGATCCAATCGG 59.480 40.000 27.53 20.48 35.70 4.18
3131 8793 6.332630 AGCATTAAACTTTTGGATCCAATCG 58.667 36.000 27.53 21.66 35.70 3.34
3132 8794 9.252962 CATAGCATTAAACTTTTGGATCCAATC 57.747 33.333 27.53 7.20 35.70 2.67
3133 8795 8.206189 CCATAGCATTAAACTTTTGGATCCAAT 58.794 33.333 27.53 14.82 35.70 3.16
3134 8796 7.180051 ACCATAGCATTAAACTTTTGGATCCAA 59.820 33.333 23.63 23.63 0.00 3.53
3135 8797 6.667414 ACCATAGCATTAAACTTTTGGATCCA 59.333 34.615 11.44 11.44 0.00 3.41
3136 8798 7.112452 ACCATAGCATTAAACTTTTGGATCC 57.888 36.000 4.20 4.20 0.00 3.36
3137 8799 9.736023 CTAACCATAGCATTAAACTTTTGGATC 57.264 33.333 13.20 0.00 0.00 3.36
3138 8800 9.474313 TCTAACCATAGCATTAAACTTTTGGAT 57.526 29.630 13.20 7.47 0.00 3.41
3139 8801 8.871629 TCTAACCATAGCATTAAACTTTTGGA 57.128 30.769 13.20 0.00 0.00 3.53
3169 8831 8.592998 CGCAACTACGAGAAAAGTATTAAGAAT 58.407 33.333 0.00 0.00 34.06 2.40
3170 8832 7.062605 CCGCAACTACGAGAAAAGTATTAAGAA 59.937 37.037 0.00 0.00 34.06 2.52
3171 8833 6.529125 CCGCAACTACGAGAAAAGTATTAAGA 59.471 38.462 0.00 0.00 34.06 2.10
3172 8834 6.529125 TCCGCAACTACGAGAAAAGTATTAAG 59.471 38.462 0.00 0.00 34.06 1.85
3173 8835 6.389091 TCCGCAACTACGAGAAAAGTATTAA 58.611 36.000 0.00 0.00 34.06 1.40
3174 8836 5.953183 TCCGCAACTACGAGAAAAGTATTA 58.047 37.500 0.00 0.00 34.06 0.98
3175 8837 4.813027 TCCGCAACTACGAGAAAAGTATT 58.187 39.130 0.00 0.00 34.06 1.89
3176 8838 4.445452 TCCGCAACTACGAGAAAAGTAT 57.555 40.909 0.00 0.00 34.06 2.12
3177 8839 3.921119 TCCGCAACTACGAGAAAAGTA 57.079 42.857 0.00 0.00 34.06 2.24
3178 8840 2.806608 TCCGCAACTACGAGAAAAGT 57.193 45.000 0.00 0.00 34.06 2.66
3179 8841 2.222819 GCATCCGCAACTACGAGAAAAG 60.223 50.000 0.00 0.00 38.36 2.27
3180 8842 1.730064 GCATCCGCAACTACGAGAAAA 59.270 47.619 0.00 0.00 38.36 2.29
3181 8843 1.067142 AGCATCCGCAACTACGAGAAA 60.067 47.619 0.00 0.00 42.27 2.52
3182 8844 0.530744 AGCATCCGCAACTACGAGAA 59.469 50.000 0.00 0.00 42.27 2.87
3183 8845 0.530744 AAGCATCCGCAACTACGAGA 59.469 50.000 0.00 0.00 42.27 4.04
3184 8846 0.647410 CAAGCATCCGCAACTACGAG 59.353 55.000 0.00 0.00 42.27 4.18
3185 8847 1.358725 GCAAGCATCCGCAACTACGA 61.359 55.000 0.00 0.00 42.27 3.43
3186 8848 1.060937 GCAAGCATCCGCAACTACG 59.939 57.895 0.00 0.00 42.27 3.51
3187 8849 1.060937 CGCAAGCATCCGCAACTAC 59.939 57.895 0.00 0.00 42.27 2.73
3188 8850 2.106074 CCGCAAGCATCCGCAACTA 61.106 57.895 0.00 0.00 42.27 2.24
3189 8851 3.434319 CCGCAAGCATCCGCAACT 61.434 61.111 0.00 0.00 42.27 3.16
3190 8852 4.481112 CCCGCAAGCATCCGCAAC 62.481 66.667 0.00 0.00 42.27 4.17
3191 8853 4.713735 TCCCGCAAGCATCCGCAA 62.714 61.111 0.00 0.00 42.27 4.85
3195 8857 2.862674 TAACCGTCCCGCAAGCATCC 62.863 60.000 0.00 0.00 0.00 3.51
3196 8858 1.022451 TTAACCGTCCCGCAAGCATC 61.022 55.000 0.00 0.00 0.00 3.91
3197 8859 0.393808 ATTAACCGTCCCGCAAGCAT 60.394 50.000 0.00 0.00 0.00 3.79
3198 8860 1.003112 ATTAACCGTCCCGCAAGCA 60.003 52.632 0.00 0.00 0.00 3.91
3199 8861 1.022451 TGATTAACCGTCCCGCAAGC 61.022 55.000 0.00 0.00 0.00 4.01
3200 8862 1.663695 ATGATTAACCGTCCCGCAAG 58.336 50.000 0.00 0.00 0.00 4.01
3201 8863 2.983907 TATGATTAACCGTCCCGCAA 57.016 45.000 0.00 0.00 0.00 4.85
3202 8864 2.168936 ACTTATGATTAACCGTCCCGCA 59.831 45.455 0.00 0.00 0.00 5.69
3203 8865 2.830104 ACTTATGATTAACCGTCCCGC 58.170 47.619 0.00 0.00 0.00 6.13
3204 8866 4.279169 TCCTACTTATGATTAACCGTCCCG 59.721 45.833 0.00 0.00 0.00 5.14
3205 8867 5.279356 CCTCCTACTTATGATTAACCGTCCC 60.279 48.000 0.00 0.00 0.00 4.46
3206 8868 5.303845 ACCTCCTACTTATGATTAACCGTCC 59.696 44.000 0.00 0.00 0.00 4.79
3207 8869 6.402456 ACCTCCTACTTATGATTAACCGTC 57.598 41.667 0.00 0.00 0.00 4.79
3208 8870 6.803366 AACCTCCTACTTATGATTAACCGT 57.197 37.500 0.00 0.00 0.00 4.83
3209 8871 7.498443 AGAAACCTCCTACTTATGATTAACCG 58.502 38.462 0.00 0.00 0.00 4.44
3210 8872 9.327628 GAAGAAACCTCCTACTTATGATTAACC 57.672 37.037 0.00 0.00 0.00 2.85
3211 8873 9.886132 TGAAGAAACCTCCTACTTATGATTAAC 57.114 33.333 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.