Multiple sequence alignment - TraesCS2D01G360900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G360900 chr2D 100.000 3185 0 0 1 3185 462791578 462788394 0.000000e+00 5882.0
1 TraesCS2D01G360900 chr2D 87.629 97 10 2 1427 1522 19556095 19556190 9.340000e-21 111.0
2 TraesCS2D01G360900 chr2B 94.644 1363 56 11 995 2348 545231421 545230067 0.000000e+00 2097.0
3 TraesCS2D01G360900 chr2B 93.400 803 49 3 2387 3185 153162556 153163358 0.000000e+00 1186.0
4 TraesCS2D01G360900 chr2B 92.841 447 26 2 509 949 545233382 545232936 0.000000e+00 643.0
5 TraesCS2D01G360900 chr2B 77.591 357 47 16 6 329 545238292 545237936 5.430000e-43 185.0
6 TraesCS2D01G360900 chr2A 94.340 1219 49 10 994 2199 607602455 607601244 0.000000e+00 1851.0
7 TraesCS2D01G360900 chr2A 92.403 803 51 6 2390 3185 515502886 515503685 0.000000e+00 1136.0
8 TraesCS2D01G360900 chr7D 94.022 803 43 4 2387 3185 7528655 7527854 0.000000e+00 1212.0
9 TraesCS2D01G360900 chr1D 93.905 804 42 6 2387 3185 213374654 213373853 0.000000e+00 1206.0
10 TraesCS2D01G360900 chr1D 92.079 808 54 7 2387 3185 296632835 296632029 0.000000e+00 1129.0
11 TraesCS2D01G360900 chr7A 92.403 803 57 3 2387 3185 17635822 17635020 0.000000e+00 1142.0
12 TraesCS2D01G360900 chr5B 92.413 804 55 5 2387 3185 528381106 528380304 0.000000e+00 1142.0
13 TraesCS2D01G360900 chr5B 97.500 40 1 0 2348 2387 397670725 397670764 5.700000e-08 69.4
14 TraesCS2D01G360900 chr4A 92.453 795 56 3 2387 3177 654061503 654062297 0.000000e+00 1133.0
15 TraesCS2D01G360900 chr4A 78.151 119 14 6 1151 1257 460459850 460459968 7.370000e-07 65.8
16 TraesCS2D01G360900 chr6B 92.115 799 57 4 2393 3185 65134868 65134070 0.000000e+00 1122.0
17 TraesCS2D01G360900 chr1B 91.322 484 36 3 1183 1666 630578372 630577895 0.000000e+00 656.0
18 TraesCS2D01G360900 chr5D 76.700 691 124 34 1331 2001 356189271 356189944 1.820000e-92 350.0
19 TraesCS2D01G360900 chr5D 96.875 32 0 1 1147 1177 356197577 356197608 6.000000e-03 52.8
20 TraesCS2D01G360900 chr3D 87.629 97 10 2 1427 1522 589672847 589672752 9.340000e-21 111.0
21 TraesCS2D01G360900 chr4D 92.857 42 3 0 1151 1192 116132203 116132162 9.540000e-06 62.1
22 TraesCS2D01G360900 chr5A 100.000 32 0 0 2348 2379 439432726 439432757 3.430000e-05 60.2
23 TraesCS2D01G360900 chr5A 96.875 32 0 1 1147 1177 457894039 457894070 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G360900 chr2D 462788394 462791578 3184 True 5882 5882 100.0000 1 3185 1 chr2D.!!$R1 3184
1 TraesCS2D01G360900 chr2B 545230067 545233382 3315 True 1370 2097 93.7425 509 2348 2 chr2B.!!$R2 1839
2 TraesCS2D01G360900 chr2B 153162556 153163358 802 False 1186 1186 93.4000 2387 3185 1 chr2B.!!$F1 798
3 TraesCS2D01G360900 chr2A 607601244 607602455 1211 True 1851 1851 94.3400 994 2199 1 chr2A.!!$R1 1205
4 TraesCS2D01G360900 chr2A 515502886 515503685 799 False 1136 1136 92.4030 2390 3185 1 chr2A.!!$F1 795
5 TraesCS2D01G360900 chr7D 7527854 7528655 801 True 1212 1212 94.0220 2387 3185 1 chr7D.!!$R1 798
6 TraesCS2D01G360900 chr1D 213373853 213374654 801 True 1206 1206 93.9050 2387 3185 1 chr1D.!!$R1 798
7 TraesCS2D01G360900 chr1D 296632029 296632835 806 True 1129 1129 92.0790 2387 3185 1 chr1D.!!$R2 798
8 TraesCS2D01G360900 chr7A 17635020 17635822 802 True 1142 1142 92.4030 2387 3185 1 chr7A.!!$R1 798
9 TraesCS2D01G360900 chr5B 528380304 528381106 802 True 1142 1142 92.4130 2387 3185 1 chr5B.!!$R1 798
10 TraesCS2D01G360900 chr4A 654061503 654062297 794 False 1133 1133 92.4530 2387 3177 1 chr4A.!!$F2 790
11 TraesCS2D01G360900 chr6B 65134070 65134868 798 True 1122 1122 92.1150 2393 3185 1 chr6B.!!$R1 792
12 TraesCS2D01G360900 chr5D 356189271 356189944 673 False 350 350 76.7000 1331 2001 1 chr5D.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 489 0.030235 GTTGGTGACGTTTGCTTCCC 59.97 55.0 0.0 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2351 3851 0.519519 TTACAACCATTCCAAGCGCG 59.48 50.0 0.0 0.0 0.0 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.966965 TTTCTAGCTAGGACTGAAGACG 57.033 45.455 20.58 0.00 0.00 4.18
24 25 3.908643 TCTAGCTAGGACTGAAGACGA 57.091 47.619 20.58 0.00 0.00 4.20
25 26 4.425180 TCTAGCTAGGACTGAAGACGAT 57.575 45.455 20.58 0.00 0.00 3.73
26 27 4.130857 TCTAGCTAGGACTGAAGACGATG 58.869 47.826 20.58 0.00 0.00 3.84
27 28 2.729194 AGCTAGGACTGAAGACGATGT 58.271 47.619 0.00 0.00 0.00 3.06
28 29 3.093057 AGCTAGGACTGAAGACGATGTT 58.907 45.455 0.00 0.00 0.00 2.71
29 30 3.129638 AGCTAGGACTGAAGACGATGTTC 59.870 47.826 0.00 0.00 0.00 3.18
30 31 3.119459 GCTAGGACTGAAGACGATGTTCA 60.119 47.826 0.00 0.00 32.93 3.18
31 32 4.618460 GCTAGGACTGAAGACGATGTTCAA 60.618 45.833 0.00 0.00 33.56 2.69
32 33 3.654414 AGGACTGAAGACGATGTTCAAC 58.346 45.455 0.00 0.00 33.56 3.18
33 34 2.737252 GGACTGAAGACGATGTTCAACC 59.263 50.000 0.00 0.00 33.56 3.77
34 35 2.737252 GACTGAAGACGATGTTCAACCC 59.263 50.000 0.00 0.00 33.56 4.11
35 36 1.726791 CTGAAGACGATGTTCAACCCG 59.273 52.381 0.00 0.00 33.56 5.28
36 37 1.069513 TGAAGACGATGTTCAACCCGT 59.930 47.619 4.95 4.95 38.01 5.28
37 38 2.140717 GAAGACGATGTTCAACCCGTT 58.859 47.619 6.54 0.00 35.22 4.44
38 39 2.249844 AGACGATGTTCAACCCGTTT 57.750 45.000 6.54 0.00 35.22 3.60
39 40 1.871039 AGACGATGTTCAACCCGTTTG 59.129 47.619 6.54 0.00 35.22 2.93
40 41 1.600485 GACGATGTTCAACCCGTTTGT 59.400 47.619 6.54 0.00 36.49 2.83
41 42 1.332375 ACGATGTTCAACCCGTTTGTG 59.668 47.619 0.00 0.00 36.49 3.33
42 43 1.332375 CGATGTTCAACCCGTTTGTGT 59.668 47.619 0.00 0.00 36.49 3.72
43 44 2.223386 CGATGTTCAACCCGTTTGTGTT 60.223 45.455 0.00 0.00 36.49 3.32
44 45 3.732471 CGATGTTCAACCCGTTTGTGTTT 60.732 43.478 0.00 0.00 36.49 2.83
45 46 3.662247 TGTTCAACCCGTTTGTGTTTT 57.338 38.095 0.00 0.00 36.49 2.43
46 47 4.778534 TGTTCAACCCGTTTGTGTTTTA 57.221 36.364 0.00 0.00 36.49 1.52
47 48 5.130292 TGTTCAACCCGTTTGTGTTTTAA 57.870 34.783 0.00 0.00 36.49 1.52
48 49 5.162075 TGTTCAACCCGTTTGTGTTTTAAG 58.838 37.500 0.00 0.00 36.49 1.85
49 50 5.048224 TGTTCAACCCGTTTGTGTTTTAAGA 60.048 36.000 0.00 0.00 36.49 2.10
50 51 5.838531 TCAACCCGTTTGTGTTTTAAGAT 57.161 34.783 0.00 0.00 36.49 2.40
51 52 5.823353 TCAACCCGTTTGTGTTTTAAGATC 58.177 37.500 0.00 0.00 36.49 2.75
52 53 5.357314 TCAACCCGTTTGTGTTTTAAGATCA 59.643 36.000 0.00 0.00 36.49 2.92
53 54 6.039941 TCAACCCGTTTGTGTTTTAAGATCAT 59.960 34.615 0.00 0.00 36.49 2.45
54 55 6.009115 ACCCGTTTGTGTTTTAAGATCATC 57.991 37.500 0.00 0.00 0.00 2.92
55 56 5.533154 ACCCGTTTGTGTTTTAAGATCATCA 59.467 36.000 0.00 0.00 0.00 3.07
56 57 5.856455 CCCGTTTGTGTTTTAAGATCATCAC 59.144 40.000 0.00 0.00 0.00 3.06
57 58 6.293955 CCCGTTTGTGTTTTAAGATCATCACT 60.294 38.462 0.00 0.00 0.00 3.41
58 59 7.094975 CCCGTTTGTGTTTTAAGATCATCACTA 60.095 37.037 0.00 0.00 0.00 2.74
59 60 7.957484 CCGTTTGTGTTTTAAGATCATCACTAG 59.043 37.037 0.00 0.00 0.00 2.57
60 61 8.495949 CGTTTGTGTTTTAAGATCATCACTAGT 58.504 33.333 0.00 0.00 0.00 2.57
61 62 9.599322 GTTTGTGTTTTAAGATCATCACTAGTG 57.401 33.333 17.17 17.17 0.00 2.74
62 63 9.554395 TTTGTGTTTTAAGATCATCACTAGTGA 57.446 29.630 27.07 27.07 44.59 3.41
63 64 8.763049 TGTGTTTTAAGATCATCACTAGTGAG 57.237 34.615 28.29 19.96 43.61 3.51
64 65 7.819415 TGTGTTTTAAGATCATCACTAGTGAGG 59.181 37.037 27.48 27.48 43.61 3.86
70 71 3.458044 TCATCACTAGTGAGGAGTGGT 57.542 47.619 30.79 11.16 44.22 4.16
71 72 3.516981 CATCACTAGTGAGGAGTGGTG 57.483 52.381 29.03 17.03 46.54 4.17
72 73 2.971901 TCACTAGTGAGGAGTGGTGA 57.028 50.000 21.74 0.00 43.76 4.02
73 74 3.458044 TCACTAGTGAGGAGTGGTGAT 57.542 47.619 21.74 0.00 43.76 3.06
74 75 3.357203 TCACTAGTGAGGAGTGGTGATC 58.643 50.000 21.74 0.00 43.76 2.92
75 76 3.092301 CACTAGTGAGGAGTGGTGATCA 58.908 50.000 18.45 0.00 40.58 2.92
76 77 3.093057 ACTAGTGAGGAGTGGTGATCAC 58.907 50.000 17.91 17.91 46.39 3.06
85 86 0.657840 GTGGTGATCACGCCTTATGC 59.342 55.000 19.33 3.81 45.89 3.14
86 87 0.463654 TGGTGATCACGCCTTATGCC 60.464 55.000 19.33 3.09 45.89 4.40
87 88 0.463654 GGTGATCACGCCTTATGCCA 60.464 55.000 19.33 0.00 42.77 4.92
88 89 1.597742 GTGATCACGCCTTATGCCAT 58.402 50.000 10.69 0.00 36.24 4.40
89 90 1.949525 GTGATCACGCCTTATGCCATT 59.050 47.619 10.69 0.00 36.24 3.16
90 91 2.358898 GTGATCACGCCTTATGCCATTT 59.641 45.455 10.69 0.00 36.24 2.32
91 92 2.358582 TGATCACGCCTTATGCCATTTG 59.641 45.455 0.00 0.00 36.24 2.32
92 93 0.455410 TCACGCCTTATGCCATTTGC 59.545 50.000 0.00 0.00 41.77 3.68
106 107 5.033326 GCCATTTGCAACCAAATAAAGTG 57.967 39.130 0.00 0.00 46.95 3.16
107 108 4.514816 GCCATTTGCAACCAAATAAAGTGT 59.485 37.500 0.00 0.00 46.95 3.55
108 109 5.698545 GCCATTTGCAACCAAATAAAGTGTA 59.301 36.000 0.00 0.00 46.95 2.90
109 110 6.128580 GCCATTTGCAACCAAATAAAGTGTAG 60.129 38.462 0.00 0.00 46.95 2.74
110 111 6.928492 CCATTTGCAACCAAATAAAGTGTAGT 59.072 34.615 0.00 0.00 46.95 2.73
111 112 7.440856 CCATTTGCAACCAAATAAAGTGTAGTT 59.559 33.333 0.00 0.00 46.95 2.24
112 113 8.825745 CATTTGCAACCAAATAAAGTGTAGTTT 58.174 29.630 0.00 0.00 46.95 2.66
113 114 7.763172 TTGCAACCAAATAAAGTGTAGTTTG 57.237 32.000 0.00 0.00 0.00 2.93
114 115 6.868622 TGCAACCAAATAAAGTGTAGTTTGT 58.131 32.000 0.00 0.00 31.42 2.83
115 116 6.975772 TGCAACCAAATAAAGTGTAGTTTGTC 59.024 34.615 0.00 0.00 31.42 3.18
116 117 7.147983 TGCAACCAAATAAAGTGTAGTTTGTCT 60.148 33.333 0.00 0.00 31.42 3.41
117 118 8.347035 GCAACCAAATAAAGTGTAGTTTGTCTA 58.653 33.333 0.00 0.00 31.42 2.59
120 121 9.398538 ACCAAATAAAGTGTAGTTTGTCTAACA 57.601 29.630 0.04 0.00 39.30 2.41
126 127 6.946229 AGTGTAGTTTGTCTAACAATAGCG 57.054 37.500 0.04 0.00 38.00 4.26
127 128 6.684686 AGTGTAGTTTGTCTAACAATAGCGA 58.315 36.000 0.04 0.00 38.00 4.93
128 129 6.585322 AGTGTAGTTTGTCTAACAATAGCGAC 59.415 38.462 0.04 0.00 38.00 5.19
129 130 5.570206 TGTAGTTTGTCTAACAATAGCGACG 59.430 40.000 0.04 0.00 38.00 5.12
130 131 3.367025 AGTTTGTCTAACAATAGCGACGC 59.633 43.478 13.03 13.03 38.00 5.19
131 132 2.640346 TGTCTAACAATAGCGACGCA 57.360 45.000 23.70 8.56 0.00 5.24
132 133 2.526077 TGTCTAACAATAGCGACGCAG 58.474 47.619 23.70 8.71 0.00 5.18
133 134 2.162809 TGTCTAACAATAGCGACGCAGA 59.837 45.455 23.70 11.11 0.00 4.26
134 135 2.530700 GTCTAACAATAGCGACGCAGAC 59.469 50.000 23.70 18.89 0.00 3.51
135 136 2.162809 TCTAACAATAGCGACGCAGACA 59.837 45.455 23.70 4.18 0.00 3.41
136 137 1.790755 AACAATAGCGACGCAGACAA 58.209 45.000 23.70 1.85 0.00 3.18
137 138 1.068474 ACAATAGCGACGCAGACAAC 58.932 50.000 23.70 0.00 0.00 3.32
138 139 0.370273 CAATAGCGACGCAGACAACC 59.630 55.000 23.70 0.00 0.00 3.77
139 140 0.037697 AATAGCGACGCAGACAACCA 60.038 50.000 23.70 0.00 0.00 3.67
140 141 0.736325 ATAGCGACGCAGACAACCAC 60.736 55.000 23.70 0.00 0.00 4.16
141 142 2.077821 TAGCGACGCAGACAACCACA 62.078 55.000 23.70 0.00 0.00 4.17
142 143 2.928361 CGACGCAGACAACCACAC 59.072 61.111 0.00 0.00 0.00 3.82
143 144 1.880796 CGACGCAGACAACCACACA 60.881 57.895 0.00 0.00 0.00 3.72
144 145 1.641677 GACGCAGACAACCACACAC 59.358 57.895 0.00 0.00 0.00 3.82
145 146 1.772063 GACGCAGACAACCACACACC 61.772 60.000 0.00 0.00 0.00 4.16
146 147 2.881266 CGCAGACAACCACACACCG 61.881 63.158 0.00 0.00 0.00 4.94
147 148 3.022287 CAGACAACCACACACCGC 58.978 61.111 0.00 0.00 0.00 5.68
148 149 2.587753 AGACAACCACACACCGCG 60.588 61.111 0.00 0.00 0.00 6.46
149 150 3.645975 GACAACCACACACCGCGG 61.646 66.667 26.86 26.86 0.00 6.46
150 151 4.476752 ACAACCACACACCGCGGT 62.477 61.111 28.70 28.70 33.32 5.68
151 152 2.280254 CAACCACACACCGCGGTA 60.280 61.111 33.70 0.00 31.12 4.02
152 153 1.888172 CAACCACACACCGCGGTAA 60.888 57.895 33.70 0.00 31.12 2.85
153 154 1.153208 AACCACACACCGCGGTAAA 60.153 52.632 33.70 0.00 31.12 2.01
154 155 0.747283 AACCACACACCGCGGTAAAA 60.747 50.000 33.70 0.00 31.12 1.52
155 156 0.747283 ACCACACACCGCGGTAAAAA 60.747 50.000 33.70 0.00 0.00 1.94
156 157 0.594110 CCACACACCGCGGTAAAAAT 59.406 50.000 33.70 12.33 0.00 1.82
157 158 1.001158 CCACACACCGCGGTAAAAATT 60.001 47.619 33.70 9.41 0.00 1.82
158 159 2.225963 CCACACACCGCGGTAAAAATTA 59.774 45.455 33.70 0.00 0.00 1.40
159 160 3.227948 CACACACCGCGGTAAAAATTAC 58.772 45.455 33.70 0.00 0.00 1.89
160 161 3.058777 CACACACCGCGGTAAAAATTACT 60.059 43.478 33.70 0.00 0.00 2.24
161 162 3.565063 ACACACCGCGGTAAAAATTACTT 59.435 39.130 33.70 0.00 0.00 2.24
162 163 4.153256 CACACCGCGGTAAAAATTACTTC 58.847 43.478 33.70 0.00 0.00 3.01
163 164 3.814283 ACACCGCGGTAAAAATTACTTCA 59.186 39.130 33.70 0.00 0.00 3.02
164 165 4.083696 ACACCGCGGTAAAAATTACTTCAG 60.084 41.667 33.70 15.76 0.00 3.02
165 166 3.120095 ACCGCGGTAAAAATTACTTCAGC 60.120 43.478 33.34 2.02 0.00 4.26
166 167 3.422655 CGCGGTAAAAATTACTTCAGCC 58.577 45.455 0.00 0.00 0.00 4.85
167 168 3.126343 CGCGGTAAAAATTACTTCAGCCT 59.874 43.478 0.00 0.00 0.00 4.58
168 169 4.659088 GCGGTAAAAATTACTTCAGCCTC 58.341 43.478 0.80 0.00 0.00 4.70
169 170 4.155280 GCGGTAAAAATTACTTCAGCCTCA 59.845 41.667 0.80 0.00 0.00 3.86
170 171 5.335348 GCGGTAAAAATTACTTCAGCCTCAA 60.335 40.000 0.80 0.00 0.00 3.02
171 172 6.625081 GCGGTAAAAATTACTTCAGCCTCAAT 60.625 38.462 0.80 0.00 0.00 2.57
172 173 6.747280 CGGTAAAAATTACTTCAGCCTCAATG 59.253 38.462 0.80 0.00 0.00 2.82
173 174 7.574967 CGGTAAAAATTACTTCAGCCTCAATGT 60.575 37.037 0.80 0.00 0.00 2.71
174 175 8.736244 GGTAAAAATTACTTCAGCCTCAATGTA 58.264 33.333 0.80 0.00 0.00 2.29
175 176 9.774742 GTAAAAATTACTTCAGCCTCAATGTAG 57.225 33.333 0.00 0.00 0.00 2.74
176 177 8.409358 AAAAATTACTTCAGCCTCAATGTAGT 57.591 30.769 0.00 0.00 33.53 2.73
177 178 7.617041 AAATTACTTCAGCCTCAATGTAGTC 57.383 36.000 0.00 0.00 31.70 2.59
178 179 5.738619 TTACTTCAGCCTCAATGTAGTCA 57.261 39.130 0.00 0.00 31.70 3.41
179 180 4.623932 ACTTCAGCCTCAATGTAGTCAA 57.376 40.909 0.00 0.00 0.00 3.18
180 181 4.319177 ACTTCAGCCTCAATGTAGTCAAC 58.681 43.478 0.00 0.00 0.00 3.18
181 182 3.334583 TCAGCCTCAATGTAGTCAACC 57.665 47.619 0.00 0.00 0.00 3.77
182 183 2.637382 TCAGCCTCAATGTAGTCAACCA 59.363 45.455 0.00 0.00 0.00 3.67
183 184 3.072330 TCAGCCTCAATGTAGTCAACCAA 59.928 43.478 0.00 0.00 0.00 3.67
184 185 3.820467 CAGCCTCAATGTAGTCAACCAAA 59.180 43.478 0.00 0.00 0.00 3.28
185 186 3.821033 AGCCTCAATGTAGTCAACCAAAC 59.179 43.478 0.00 0.00 0.00 2.93
186 187 3.821033 GCCTCAATGTAGTCAACCAAACT 59.179 43.478 0.00 0.00 0.00 2.66
187 188 5.001232 GCCTCAATGTAGTCAACCAAACTA 58.999 41.667 0.00 0.00 0.00 2.24
188 189 5.106673 GCCTCAATGTAGTCAACCAAACTAC 60.107 44.000 6.50 6.50 46.04 2.73
194 195 5.880054 GTAGTCAACCAAACTACATGCAT 57.120 39.130 8.21 0.00 45.46 3.96
195 196 6.978343 GTAGTCAACCAAACTACATGCATA 57.022 37.500 0.00 0.00 45.46 3.14
196 197 7.553881 GTAGTCAACCAAACTACATGCATAT 57.446 36.000 0.00 0.00 45.46 1.78
197 198 6.441093 AGTCAACCAAACTACATGCATATG 57.559 37.500 0.00 0.00 40.24 1.78
199 200 6.434028 AGTCAACCAAACTACATGCATATGTT 59.566 34.615 0.00 2.00 45.01 2.71
200 201 7.039784 AGTCAACCAAACTACATGCATATGTTT 60.040 33.333 14.23 14.23 45.01 2.83
201 202 7.062138 GTCAACCAAACTACATGCATATGTTTG 59.938 37.037 26.88 26.88 45.01 2.93
202 203 6.832520 ACCAAACTACATGCATATGTTTGA 57.167 33.333 31.03 6.95 45.01 2.69
203 204 7.408756 ACCAAACTACATGCATATGTTTGAT 57.591 32.000 31.03 22.14 45.01 2.57
204 205 7.839907 ACCAAACTACATGCATATGTTTGATT 58.160 30.769 31.03 22.11 45.01 2.57
205 206 8.313292 ACCAAACTACATGCATATGTTTGATTT 58.687 29.630 31.03 20.64 45.01 2.17
206 207 9.153721 CCAAACTACATGCATATGTTTGATTTT 57.846 29.630 31.03 10.13 45.01 1.82
209 210 8.188531 ACTACATGCATATGTTTGATTTTTGC 57.811 30.769 0.00 0.00 45.01 3.68
210 211 7.818446 ACTACATGCATATGTTTGATTTTTGCA 59.182 29.630 0.00 0.00 45.01 4.08
211 212 7.618502 ACATGCATATGTTTGATTTTTGCAT 57.381 28.000 0.00 1.90 45.01 3.96
212 213 8.719560 ACATGCATATGTTTGATTTTTGCATA 57.280 26.923 0.00 0.00 45.01 3.14
213 214 8.605746 ACATGCATATGTTTGATTTTTGCATAC 58.394 29.630 0.00 0.00 45.01 2.39
214 215 8.604890 CATGCATATGTTTGATTTTTGCATACA 58.395 29.630 0.00 0.00 44.84 2.29
215 216 8.719560 TGCATATGTTTGATTTTTGCATACAT 57.280 26.923 4.29 0.00 39.83 2.29
216 217 9.163899 TGCATATGTTTGATTTTTGCATACATT 57.836 25.926 4.29 0.00 38.36 2.71
221 222 8.464770 TGTTTGATTTTTGCATACATTAGCTC 57.535 30.769 0.00 0.00 0.00 4.09
222 223 8.087136 TGTTTGATTTTTGCATACATTAGCTCA 58.913 29.630 0.00 0.00 0.00 4.26
223 224 8.924691 GTTTGATTTTTGCATACATTAGCTCAA 58.075 29.630 0.00 0.00 0.00 3.02
224 225 9.486497 TTTGATTTTTGCATACATTAGCTCAAA 57.514 25.926 0.00 0.00 0.00 2.69
225 226 8.464770 TGATTTTTGCATACATTAGCTCAAAC 57.535 30.769 0.00 0.00 0.00 2.93
226 227 8.087136 TGATTTTTGCATACATTAGCTCAAACA 58.913 29.630 0.00 0.00 0.00 2.83
227 228 7.872163 TTTTTGCATACATTAGCTCAAACAG 57.128 32.000 0.00 0.00 0.00 3.16
228 229 5.565592 TTGCATACATTAGCTCAAACAGG 57.434 39.130 0.00 0.00 0.00 4.00
229 230 3.378112 TGCATACATTAGCTCAAACAGGC 59.622 43.478 0.00 0.00 0.00 4.85
230 231 3.378112 GCATACATTAGCTCAAACAGGCA 59.622 43.478 0.00 0.00 0.00 4.75
231 232 4.142403 GCATACATTAGCTCAAACAGGCAA 60.142 41.667 0.00 0.00 0.00 4.52
232 233 5.622007 GCATACATTAGCTCAAACAGGCAAA 60.622 40.000 0.00 0.00 0.00 3.68
233 234 4.935352 ACATTAGCTCAAACAGGCAAAA 57.065 36.364 0.00 0.00 0.00 2.44
234 235 5.473066 ACATTAGCTCAAACAGGCAAAAT 57.527 34.783 0.00 0.00 0.00 1.82
235 236 5.857268 ACATTAGCTCAAACAGGCAAAATT 58.143 33.333 0.00 0.00 0.00 1.82
236 237 5.928264 ACATTAGCTCAAACAGGCAAAATTC 59.072 36.000 0.00 0.00 0.00 2.17
237 238 3.391506 AGCTCAAACAGGCAAAATTCC 57.608 42.857 0.00 0.00 0.00 3.01
238 239 2.967887 AGCTCAAACAGGCAAAATTCCT 59.032 40.909 0.00 0.00 0.00 3.36
239 240 4.151883 AGCTCAAACAGGCAAAATTCCTA 58.848 39.130 0.00 0.00 31.52 2.94
240 241 4.588528 AGCTCAAACAGGCAAAATTCCTAA 59.411 37.500 0.00 0.00 31.52 2.69
241 242 5.070313 AGCTCAAACAGGCAAAATTCCTAAA 59.930 36.000 0.00 0.00 31.52 1.85
242 243 5.757808 GCTCAAACAGGCAAAATTCCTAAAA 59.242 36.000 0.00 0.00 31.52 1.52
243 244 6.259829 GCTCAAACAGGCAAAATTCCTAAAAA 59.740 34.615 0.00 0.00 31.52 1.94
244 245 7.546778 TCAAACAGGCAAAATTCCTAAAAAC 57.453 32.000 0.00 0.00 31.52 2.43
245 246 7.106239 TCAAACAGGCAAAATTCCTAAAAACA 58.894 30.769 0.00 0.00 31.52 2.83
246 247 7.607991 TCAAACAGGCAAAATTCCTAAAAACAA 59.392 29.630 0.00 0.00 31.52 2.83
247 248 7.929941 AACAGGCAAAATTCCTAAAAACAAA 57.070 28.000 0.00 0.00 31.52 2.83
248 249 7.552458 ACAGGCAAAATTCCTAAAAACAAAG 57.448 32.000 0.00 0.00 31.52 2.77
249 250 7.334858 ACAGGCAAAATTCCTAAAAACAAAGA 58.665 30.769 0.00 0.00 31.52 2.52
250 251 7.992608 ACAGGCAAAATTCCTAAAAACAAAGAT 59.007 29.630 0.00 0.00 31.52 2.40
251 252 8.284693 CAGGCAAAATTCCTAAAAACAAAGATG 58.715 33.333 0.00 0.00 31.52 2.90
252 253 7.992608 AGGCAAAATTCCTAAAAACAAAGATGT 59.007 29.630 0.00 0.00 34.84 3.06
253 254 8.282592 GGCAAAATTCCTAAAAACAAAGATGTC 58.717 33.333 0.00 0.00 39.40 3.06
254 255 8.825745 GCAAAATTCCTAAAAACAAAGATGTCA 58.174 29.630 0.00 0.00 39.40 3.58
257 258 8.887036 AATTCCTAAAAACAAAGATGTCAACC 57.113 30.769 0.00 0.00 39.40 3.77
258 259 7.411486 TTCCTAAAAACAAAGATGTCAACCA 57.589 32.000 0.00 0.00 39.40 3.67
259 260 7.411486 TCCTAAAAACAAAGATGTCAACCAA 57.589 32.000 0.00 0.00 39.40 3.67
260 261 7.841956 TCCTAAAAACAAAGATGTCAACCAAA 58.158 30.769 0.00 0.00 39.40 3.28
261 262 7.762159 TCCTAAAAACAAAGATGTCAACCAAAC 59.238 33.333 0.00 0.00 39.40 2.93
262 263 6.401955 AAAAACAAAGATGTCAACCAAACG 57.598 33.333 0.00 0.00 39.40 3.60
263 264 3.078594 ACAAAGATGTCAACCAAACGC 57.921 42.857 0.00 0.00 33.41 4.84
264 265 2.043411 CAAAGATGTCAACCAAACGCG 58.957 47.619 3.53 3.53 0.00 6.01
265 266 1.305201 AAGATGTCAACCAAACGCGT 58.695 45.000 5.58 5.58 0.00 6.01
266 267 0.865769 AGATGTCAACCAAACGCGTC 59.134 50.000 14.44 0.00 0.00 5.19
267 268 0.584396 GATGTCAACCAAACGCGTCA 59.416 50.000 14.44 3.33 0.00 4.35
268 269 1.196808 GATGTCAACCAAACGCGTCAT 59.803 47.619 14.44 9.09 0.00 3.06
269 270 1.867166 TGTCAACCAAACGCGTCATA 58.133 45.000 14.44 0.00 0.00 2.15
270 271 2.418692 TGTCAACCAAACGCGTCATAT 58.581 42.857 14.44 0.00 0.00 1.78
271 272 2.158645 TGTCAACCAAACGCGTCATATG 59.841 45.455 14.44 9.76 0.00 1.78
272 273 2.158841 GTCAACCAAACGCGTCATATGT 59.841 45.455 14.44 2.84 0.00 2.29
273 274 2.158645 TCAACCAAACGCGTCATATGTG 59.841 45.455 14.44 7.34 0.00 3.21
274 275 1.083489 ACCAAACGCGTCATATGTGG 58.917 50.000 14.44 15.40 0.00 4.17
275 276 1.338294 ACCAAACGCGTCATATGTGGA 60.338 47.619 14.44 0.00 0.00 4.02
276 277 1.939934 CCAAACGCGTCATATGTGGAT 59.060 47.619 14.44 0.00 0.00 3.41
277 278 2.354510 CCAAACGCGTCATATGTGGATT 59.645 45.455 14.44 0.00 0.00 3.01
278 279 3.181501 CCAAACGCGTCATATGTGGATTT 60.182 43.478 14.44 0.00 0.00 2.17
279 280 4.411327 CAAACGCGTCATATGTGGATTTT 58.589 39.130 14.44 0.00 0.00 1.82
280 281 3.673746 ACGCGTCATATGTGGATTTTG 57.326 42.857 5.58 0.00 0.00 2.44
281 282 3.006940 ACGCGTCATATGTGGATTTTGT 58.993 40.909 5.58 0.00 0.00 2.83
282 283 3.063452 ACGCGTCATATGTGGATTTTGTC 59.937 43.478 5.58 0.00 0.00 3.18
296 297 6.705863 GGATTTTGTCCTTCTTGCATCTAT 57.294 37.500 0.00 0.00 44.16 1.98
297 298 6.501781 GGATTTTGTCCTTCTTGCATCTATG 58.498 40.000 0.00 0.00 44.16 2.23
298 299 5.902613 TTTTGTCCTTCTTGCATCTATGG 57.097 39.130 0.00 0.00 0.00 2.74
299 300 4.574674 TTGTCCTTCTTGCATCTATGGT 57.425 40.909 0.00 0.00 0.00 3.55
300 301 4.142609 TGTCCTTCTTGCATCTATGGTC 57.857 45.455 0.00 0.00 0.00 4.02
301 302 3.776969 TGTCCTTCTTGCATCTATGGTCT 59.223 43.478 0.00 0.00 0.00 3.85
302 303 4.125703 GTCCTTCTTGCATCTATGGTCTG 58.874 47.826 0.00 0.00 0.00 3.51
303 304 3.776969 TCCTTCTTGCATCTATGGTCTGT 59.223 43.478 0.00 0.00 0.00 3.41
304 305 4.125703 CCTTCTTGCATCTATGGTCTGTC 58.874 47.826 0.00 0.00 0.00 3.51
305 306 4.141756 CCTTCTTGCATCTATGGTCTGTCT 60.142 45.833 0.00 0.00 0.00 3.41
306 307 5.069648 CCTTCTTGCATCTATGGTCTGTCTA 59.930 44.000 0.00 0.00 0.00 2.59
307 308 6.407412 CCTTCTTGCATCTATGGTCTGTCTAA 60.407 42.308 0.00 0.00 0.00 2.10
308 309 6.737720 TCTTGCATCTATGGTCTGTCTAAT 57.262 37.500 0.00 0.00 0.00 1.73
309 310 7.129457 TCTTGCATCTATGGTCTGTCTAATT 57.871 36.000 0.00 0.00 0.00 1.40
310 311 8.250143 TCTTGCATCTATGGTCTGTCTAATTA 57.750 34.615 0.00 0.00 0.00 1.40
311 312 8.704668 TCTTGCATCTATGGTCTGTCTAATTAA 58.295 33.333 0.00 0.00 0.00 1.40
312 313 9.330063 CTTGCATCTATGGTCTGTCTAATTAAA 57.670 33.333 0.00 0.00 0.00 1.52
313 314 9.851686 TTGCATCTATGGTCTGTCTAATTAAAT 57.148 29.630 0.00 0.00 0.00 1.40
314 315 9.494271 TGCATCTATGGTCTGTCTAATTAAATC 57.506 33.333 0.00 0.00 0.00 2.17
315 316 9.717942 GCATCTATGGTCTGTCTAATTAAATCT 57.282 33.333 0.00 0.00 0.00 2.40
321 322 8.306313 TGGTCTGTCTAATTAAATCTAGCTGA 57.694 34.615 0.00 0.00 0.00 4.26
322 323 8.758829 TGGTCTGTCTAATTAAATCTAGCTGAA 58.241 33.333 0.00 0.00 0.00 3.02
323 324 9.771534 GGTCTGTCTAATTAAATCTAGCTGAAT 57.228 33.333 0.00 0.00 0.00 2.57
336 337 9.453572 AAATCTAGCTGAATGAGTACATGAAAA 57.546 29.630 0.00 0.00 36.79 2.29
337 338 9.453572 AATCTAGCTGAATGAGTACATGAAAAA 57.546 29.630 0.00 0.00 36.79 1.94
365 366 9.772973 TGAGTTCTGTACATAATTTAGTTGTGT 57.227 29.630 0.00 0.00 43.47 3.72
367 368 9.555727 AGTTCTGTACATAATTTAGTTGTGTGT 57.444 29.630 0.00 0.00 41.51 3.72
375 376 9.174166 ACATAATTTAGTTGTGTGTATTCCCTC 57.826 33.333 0.00 0.00 40.18 4.30
376 377 8.621286 CATAATTTAGTTGTGTGTATTCCCTCC 58.379 37.037 0.00 0.00 0.00 4.30
377 378 5.570205 TTTAGTTGTGTGTATTCCCTCCA 57.430 39.130 0.00 0.00 0.00 3.86
378 379 3.703001 AGTTGTGTGTATTCCCTCCAG 57.297 47.619 0.00 0.00 0.00 3.86
379 380 2.084546 GTTGTGTGTATTCCCTCCAGC 58.915 52.381 0.00 0.00 0.00 4.85
380 381 0.618458 TGTGTGTATTCCCTCCAGCC 59.382 55.000 0.00 0.00 0.00 4.85
381 382 0.107165 GTGTGTATTCCCTCCAGCCC 60.107 60.000 0.00 0.00 0.00 5.19
382 383 1.146263 GTGTATTCCCTCCAGCCCG 59.854 63.158 0.00 0.00 0.00 6.13
383 384 2.070039 TGTATTCCCTCCAGCCCGG 61.070 63.158 0.00 0.00 0.00 5.73
384 385 3.168528 TATTCCCTCCAGCCCGGC 61.169 66.667 0.00 0.00 33.14 6.13
385 386 3.714078 TATTCCCTCCAGCCCGGCT 62.714 63.158 5.94 5.94 40.77 5.52
394 395 4.130255 AGCCCGGCTGAGTAGAAA 57.870 55.556 12.38 0.00 37.57 2.52
395 396 1.597461 AGCCCGGCTGAGTAGAAAC 59.403 57.895 12.38 0.00 37.57 2.78
396 397 1.192146 AGCCCGGCTGAGTAGAAACA 61.192 55.000 12.38 0.00 37.57 2.83
397 398 1.019805 GCCCGGCTGAGTAGAAACAC 61.020 60.000 0.71 0.00 0.00 3.32
398 399 0.736325 CCCGGCTGAGTAGAAACACG 60.736 60.000 0.00 0.00 0.00 4.49
399 400 0.736325 CCGGCTGAGTAGAAACACGG 60.736 60.000 0.00 0.00 0.00 4.94
400 401 0.242825 CGGCTGAGTAGAAACACGGA 59.757 55.000 0.00 0.00 0.00 4.69
401 402 1.135083 CGGCTGAGTAGAAACACGGAT 60.135 52.381 0.00 0.00 0.00 4.18
402 403 2.271800 GGCTGAGTAGAAACACGGATG 58.728 52.381 0.00 0.00 0.00 3.51
403 404 2.353803 GGCTGAGTAGAAACACGGATGT 60.354 50.000 0.00 0.00 42.46 3.06
412 413 2.800516 ACACGGATGTTTGGTTGCA 58.199 47.368 0.00 0.00 34.46 4.08
413 414 1.107114 ACACGGATGTTTGGTTGCAA 58.893 45.000 0.00 0.00 34.46 4.08
414 415 1.202359 ACACGGATGTTTGGTTGCAAC 60.202 47.619 21.59 21.59 34.46 4.17
415 416 4.415719 ACACGGATGTTTGGTTGCAACC 62.416 50.000 36.78 36.78 42.46 3.77
423 424 2.203480 GGTTGCAACCCTGGCTGA 60.203 61.111 34.36 0.00 43.43 4.26
424 425 2.270986 GGTTGCAACCCTGGCTGAG 61.271 63.158 34.36 0.00 43.43 3.35
425 426 1.228245 GTTGCAACCCTGGCTGAGA 60.228 57.895 19.15 0.00 0.00 3.27
426 427 1.073722 TTGCAACCCTGGCTGAGAG 59.926 57.895 0.00 0.00 0.00 3.20
427 428 2.045536 GCAACCCTGGCTGAGAGG 60.046 66.667 0.00 0.00 0.00 3.69
432 433 2.509916 CCTGGCTGAGAGGGATGC 59.490 66.667 0.00 0.00 0.00 3.91
433 434 2.372890 CCTGGCTGAGAGGGATGCA 61.373 63.158 0.00 0.00 0.00 3.96
434 435 1.706995 CCTGGCTGAGAGGGATGCAT 61.707 60.000 0.00 0.00 0.00 3.96
435 436 0.535328 CTGGCTGAGAGGGATGCATG 60.535 60.000 2.46 0.00 0.00 4.06
436 437 1.897615 GGCTGAGAGGGATGCATGC 60.898 63.158 11.82 11.82 0.00 4.06
437 438 1.153025 GCTGAGAGGGATGCATGCA 60.153 57.895 25.04 25.04 0.00 3.96
438 439 0.750546 GCTGAGAGGGATGCATGCAA 60.751 55.000 26.68 8.49 0.00 4.08
439 440 1.022735 CTGAGAGGGATGCATGCAAC 58.977 55.000 26.68 22.48 0.00 4.17
440 441 0.394762 TGAGAGGGATGCATGCAACC 60.395 55.000 32.79 32.79 38.04 3.77
441 442 0.394762 GAGAGGGATGCATGCAACCA 60.395 55.000 38.12 13.37 40.17 3.67
442 443 0.040058 AGAGGGATGCATGCAACCAA 59.960 50.000 38.12 12.98 40.17 3.67
443 444 0.896923 GAGGGATGCATGCAACCAAA 59.103 50.000 38.12 12.24 40.17 3.28
444 445 0.609662 AGGGATGCATGCAACCAAAC 59.390 50.000 38.12 25.34 40.17 2.93
445 446 0.391528 GGGATGCATGCAACCAAACC 60.392 55.000 38.12 25.39 40.17 3.27
446 447 0.321021 GGATGCATGCAACCAAACCA 59.679 50.000 34.71 6.57 38.55 3.67
447 448 1.065998 GGATGCATGCAACCAAACCAT 60.066 47.619 34.71 12.94 38.55 3.55
448 449 2.004017 GATGCATGCAACCAAACCATG 58.996 47.619 26.68 0.00 39.38 3.66
450 451 2.843669 CATGCAACCAAACCATGCC 58.156 52.632 0.00 0.00 39.31 4.40
451 452 0.674269 CATGCAACCAAACCATGCCC 60.674 55.000 0.00 0.00 39.31 5.36
452 453 1.126329 ATGCAACCAAACCATGCCCA 61.126 50.000 0.00 0.00 39.31 5.36
453 454 1.126329 TGCAACCAAACCATGCCCAT 61.126 50.000 0.00 0.00 39.31 4.00
454 455 0.674269 GCAACCAAACCATGCCCATG 60.674 55.000 1.28 1.28 38.51 3.66
455 456 0.975135 CAACCAAACCATGCCCATGA 59.025 50.000 9.73 0.00 41.20 3.07
456 457 1.347050 CAACCAAACCATGCCCATGAA 59.653 47.619 9.73 0.00 41.20 2.57
457 458 1.269012 ACCAAACCATGCCCATGAAG 58.731 50.000 9.73 0.00 41.20 3.02
458 459 1.203162 ACCAAACCATGCCCATGAAGA 60.203 47.619 9.73 0.00 41.20 2.87
459 460 1.901159 CCAAACCATGCCCATGAAGAA 59.099 47.619 9.73 0.00 41.20 2.52
460 461 2.354003 CCAAACCATGCCCATGAAGAAC 60.354 50.000 9.73 0.00 41.20 3.01
461 462 2.564062 CAAACCATGCCCATGAAGAACT 59.436 45.455 9.73 0.00 41.20 3.01
462 463 3.737559 AACCATGCCCATGAAGAACTA 57.262 42.857 9.73 0.00 41.20 2.24
463 464 3.287867 ACCATGCCCATGAAGAACTAG 57.712 47.619 9.73 0.00 41.20 2.57
464 465 1.952296 CCATGCCCATGAAGAACTAGC 59.048 52.381 9.73 0.00 41.20 3.42
465 466 2.422519 CCATGCCCATGAAGAACTAGCT 60.423 50.000 9.73 0.00 41.20 3.32
466 467 2.698855 TGCCCATGAAGAACTAGCTC 57.301 50.000 0.00 0.00 0.00 4.09
467 468 1.908619 TGCCCATGAAGAACTAGCTCA 59.091 47.619 0.00 0.00 0.00 4.26
468 469 2.284190 GCCCATGAAGAACTAGCTCAC 58.716 52.381 0.00 0.00 0.00 3.51
469 470 2.544685 CCCATGAAGAACTAGCTCACG 58.455 52.381 0.00 0.00 0.00 4.35
470 471 2.093973 CCCATGAAGAACTAGCTCACGT 60.094 50.000 0.00 0.00 0.00 4.49
471 472 3.589988 CCATGAAGAACTAGCTCACGTT 58.410 45.455 0.00 0.00 0.00 3.99
472 473 3.369147 CCATGAAGAACTAGCTCACGTTG 59.631 47.826 0.00 0.00 0.00 4.10
473 474 3.026630 TGAAGAACTAGCTCACGTTGG 57.973 47.619 0.00 0.00 0.00 3.77
474 475 2.364324 TGAAGAACTAGCTCACGTTGGT 59.636 45.455 0.00 0.00 0.00 3.67
475 476 2.440539 AGAACTAGCTCACGTTGGTG 57.559 50.000 0.00 0.00 45.78 4.17
486 487 3.142796 CGTTGGTGACGTTTGCTTC 57.857 52.632 0.00 0.00 46.49 3.86
487 488 0.316689 CGTTGGTGACGTTTGCTTCC 60.317 55.000 0.00 0.00 46.49 3.46
488 489 0.030235 GTTGGTGACGTTTGCTTCCC 59.970 55.000 0.00 0.00 0.00 3.97
489 490 1.440938 TTGGTGACGTTTGCTTCCCG 61.441 55.000 0.00 0.00 0.00 5.14
490 491 2.613506 GGTGACGTTTGCTTCCCGG 61.614 63.158 0.00 0.00 0.00 5.73
491 492 2.281208 TGACGTTTGCTTCCCGGG 60.281 61.111 16.85 16.85 0.00 5.73
492 493 2.031465 GACGTTTGCTTCCCGGGA 59.969 61.111 22.63 22.63 0.00 5.14
493 494 1.598685 GACGTTTGCTTCCCGGGAA 60.599 57.895 33.52 33.52 0.00 3.97
494 495 1.152922 ACGTTTGCTTCCCGGGAAA 60.153 52.632 34.78 20.22 33.34 3.13
495 496 0.538746 ACGTTTGCTTCCCGGGAAAT 60.539 50.000 34.78 12.78 33.34 2.17
496 497 0.170339 CGTTTGCTTCCCGGGAAATC 59.830 55.000 34.78 27.64 33.34 2.17
497 498 1.253100 GTTTGCTTCCCGGGAAATCA 58.747 50.000 34.78 29.65 33.34 2.57
498 499 1.067846 GTTTGCTTCCCGGGAAATCAC 60.068 52.381 34.78 23.75 33.34 3.06
499 500 0.111446 TTGCTTCCCGGGAAATCACA 59.889 50.000 34.78 25.82 33.34 3.58
500 501 0.331278 TGCTTCCCGGGAAATCACAT 59.669 50.000 34.78 0.00 33.34 3.21
501 502 1.562008 TGCTTCCCGGGAAATCACATA 59.438 47.619 34.78 12.29 33.34 2.29
502 503 2.025793 TGCTTCCCGGGAAATCACATAA 60.026 45.455 34.78 11.51 33.34 1.90
503 504 2.618709 GCTTCCCGGGAAATCACATAAG 59.381 50.000 34.78 21.32 33.34 1.73
504 505 3.886123 CTTCCCGGGAAATCACATAAGT 58.114 45.455 34.78 0.00 33.34 2.24
505 506 4.270008 CTTCCCGGGAAATCACATAAGTT 58.730 43.478 34.78 0.00 33.34 2.66
506 507 3.616219 TCCCGGGAAATCACATAAGTTG 58.384 45.455 24.50 0.00 0.00 3.16
507 508 3.009695 TCCCGGGAAATCACATAAGTTGT 59.990 43.478 24.50 0.00 39.91 3.32
511 512 4.574828 CGGGAAATCACATAAGTTGTAGGG 59.425 45.833 0.00 0.00 36.57 3.53
520 521 0.251341 AAGTTGTAGGGGCAAGGCAG 60.251 55.000 0.00 0.00 0.00 4.85
534 535 2.989166 CAAGGCAGAAAAGCGAAAATCC 59.011 45.455 0.00 0.00 34.64 3.01
538 539 1.135402 CAGAAAAGCGAAAATCCCCGG 60.135 52.381 0.00 0.00 0.00 5.73
540 541 0.885879 AAAAGCGAAAATCCCCGGAC 59.114 50.000 0.73 0.00 0.00 4.79
541 542 0.963856 AAAGCGAAAATCCCCGGACC 60.964 55.000 0.73 0.00 0.00 4.46
542 543 1.848886 AAGCGAAAATCCCCGGACCT 61.849 55.000 0.73 0.00 0.00 3.85
560 561 2.290577 ACCTGGATTCCAAGAGAAGTGC 60.291 50.000 8.33 0.00 38.07 4.40
609 610 3.367051 CTTCATGTCGCGGCGTTGG 62.367 63.158 22.90 10.59 0.00 3.77
651 652 3.414700 CCGGTGCAACGCTGTCTC 61.415 66.667 21.21 0.00 38.12 3.36
721 722 4.517952 TTCCAACCACGAAAGATACGTA 57.482 40.909 0.00 0.00 42.07 3.57
770 771 0.861837 CCTCTCTGACAAACACACGC 59.138 55.000 0.00 0.00 0.00 5.34
895 902 3.560068 GTGGCTGTGTATGGTATTGCTAC 59.440 47.826 0.00 0.00 0.00 3.58
902 909 3.707611 TGTATGGTATTGCTACGGTTCCT 59.292 43.478 0.00 0.00 0.00 3.36
912 919 0.978907 TACGGTTCCTGTTTCCCTCC 59.021 55.000 0.00 0.00 0.00 4.30
913 920 1.002502 CGGTTCCTGTTTCCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
966 2415 3.056107 AGAGCAGTGTCGCATAAAAGGTA 60.056 43.478 0.00 0.00 0.00 3.08
972 2421 6.213677 CAGTGTCGCATAAAAGGTATAGCTA 58.786 40.000 4.57 0.00 0.00 3.32
977 2426 5.243060 TCGCATAAAAGGTATAGCTAGCTCA 59.757 40.000 23.26 7.78 34.63 4.26
978 2427 5.574830 CGCATAAAAGGTATAGCTAGCTCAG 59.425 44.000 23.26 0.00 34.63 3.35
1005 2481 1.533711 GTACCCCTGCATCATGGCT 59.466 57.895 0.00 0.00 34.04 4.75
1306 2788 3.611674 TCGGCAACAGCACGAGGA 61.612 61.111 0.00 0.00 32.29 3.71
1307 2789 3.414700 CGGCAACAGCACGAGGAC 61.415 66.667 0.00 0.00 0.00 3.85
1308 2790 3.414700 GGCAACAGCACGAGGACG 61.415 66.667 0.00 0.00 45.75 4.79
1309 2791 2.355837 GCAACAGCACGAGGACGA 60.356 61.111 0.00 0.00 42.66 4.20
1310 2792 2.375766 GCAACAGCACGAGGACGAG 61.376 63.158 0.00 0.00 42.66 4.18
1311 2793 1.734477 CAACAGCACGAGGACGAGG 60.734 63.158 0.00 0.00 42.66 4.63
1525 3007 2.584418 CGCTGAGATGGGTGCTCG 60.584 66.667 0.00 0.00 35.15 5.03
2043 3535 2.586357 GCGGCGAAGGAGATGGAC 60.586 66.667 12.98 0.00 0.00 4.02
2160 3655 2.900546 AGGACAGGAGAAGAACAACGAT 59.099 45.455 0.00 0.00 0.00 3.73
2183 3678 1.522668 TGGAAATCCAGTTGCGAGTG 58.477 50.000 1.30 1.30 42.01 3.51
2200 3697 7.561237 TGCGAGTGAAAATAACAAATTTAGC 57.439 32.000 0.00 0.00 0.00 3.09
2201 3698 6.584563 TGCGAGTGAAAATAACAAATTTAGCC 59.415 34.615 0.00 0.00 0.00 3.93
2210 3707 7.832503 AATAACAAATTTAGCCAGCATTCAC 57.167 32.000 0.00 0.00 0.00 3.18
2246 3743 6.860539 TCATTGTGTTAATTCACGTTTGGATG 59.139 34.615 0.00 0.00 40.74 3.51
2256 3753 4.171005 TCACGTTTGGATGTATCGTTCTC 58.829 43.478 0.00 0.00 32.47 2.87
2258 3755 3.176708 CGTTTGGATGTATCGTTCTCGT 58.823 45.455 0.00 0.00 38.33 4.18
2259 3756 3.611113 CGTTTGGATGTATCGTTCTCGTT 59.389 43.478 0.00 0.00 38.33 3.85
2261 3758 5.548250 GTTTGGATGTATCGTTCTCGTTTC 58.452 41.667 0.00 0.00 38.33 2.78
2263 3760 3.193903 TGGATGTATCGTTCTCGTTTCCA 59.806 43.478 0.00 0.00 38.33 3.53
2264 3761 4.142026 TGGATGTATCGTTCTCGTTTCCAT 60.142 41.667 0.00 0.00 38.33 3.41
2266 3763 5.276868 GGATGTATCGTTCTCGTTTCCATTG 60.277 44.000 0.00 0.00 38.33 2.82
2267 3764 3.369756 TGTATCGTTCTCGTTTCCATTGC 59.630 43.478 0.00 0.00 38.33 3.56
2268 3765 1.872388 TCGTTCTCGTTTCCATTGCA 58.128 45.000 0.00 0.00 38.33 4.08
2270 3767 1.135972 CGTTCTCGTTTCCATTGCAGG 60.136 52.381 0.00 0.00 0.00 4.85
2271 3768 2.151202 GTTCTCGTTTCCATTGCAGGA 58.849 47.619 0.00 0.00 35.41 3.86
2272 3769 2.099141 TCTCGTTTCCATTGCAGGAG 57.901 50.000 0.00 0.00 39.25 3.69
2273 3770 1.347707 TCTCGTTTCCATTGCAGGAGT 59.652 47.619 0.00 0.00 39.25 3.85
2274 3771 2.565391 TCTCGTTTCCATTGCAGGAGTA 59.435 45.455 0.00 0.00 39.25 2.59
2275 3772 3.197766 TCTCGTTTCCATTGCAGGAGTAT 59.802 43.478 0.00 0.00 39.25 2.12
2276 3773 3.941483 CTCGTTTCCATTGCAGGAGTATT 59.059 43.478 0.00 0.00 39.25 1.89
2277 3774 3.689161 TCGTTTCCATTGCAGGAGTATTG 59.311 43.478 0.00 0.00 39.25 1.90
2278 3775 3.689161 CGTTTCCATTGCAGGAGTATTGA 59.311 43.478 0.00 0.00 39.25 2.57
2279 3776 4.201851 CGTTTCCATTGCAGGAGTATTGAG 60.202 45.833 0.00 0.00 39.25 3.02
2304 3804 1.083489 TTTATGAAAGGCACTCCGCG 58.917 50.000 0.00 0.00 43.84 6.46
2319 3819 0.238289 CCGCGTTGCTTTCACTGAAT 59.762 50.000 4.92 0.00 0.00 2.57
2341 3841 4.234530 ACTGGAGCGGTCGTATTATTAC 57.765 45.455 8.77 0.00 0.00 1.89
2348 3848 4.219288 AGCGGTCGTATTATTACCCCTAAG 59.781 45.833 0.00 0.00 0.00 2.18
2349 3849 4.619160 GCGGTCGTATTATTACCCCTAAGG 60.619 50.000 0.00 0.00 43.78 2.69
2360 3860 4.467084 CCTAAGGGCGCGCTTGGA 62.467 66.667 39.56 25.56 0.00 3.53
2361 3861 2.435938 CTAAGGGCGCGCTTGGAA 60.436 61.111 40.07 24.68 0.00 3.53
2362 3862 1.819632 CTAAGGGCGCGCTTGGAAT 60.820 57.895 40.07 22.63 0.00 3.01
2363 3863 2.051804 CTAAGGGCGCGCTTGGAATG 62.052 60.000 40.07 23.63 0.00 2.67
2366 3866 3.747976 GGCGCGCTTGGAATGGTT 61.748 61.111 32.29 0.00 0.00 3.67
2367 3867 2.504681 GCGCGCTTGGAATGGTTG 60.505 61.111 26.67 0.00 0.00 3.77
2368 3868 2.953821 CGCGCTTGGAATGGTTGT 59.046 55.556 5.56 0.00 0.00 3.32
2369 3869 1.917782 GCGCGCTTGGAATGGTTGTA 61.918 55.000 26.67 0.00 0.00 2.41
2370 3870 0.519519 CGCGCTTGGAATGGTTGTAA 59.480 50.000 5.56 0.00 0.00 2.41
2371 3871 1.465689 CGCGCTTGGAATGGTTGTAAG 60.466 52.381 5.56 0.00 0.00 2.34
2372 3872 1.539827 GCGCTTGGAATGGTTGTAAGT 59.460 47.619 0.00 0.00 0.00 2.24
2373 3873 2.745281 GCGCTTGGAATGGTTGTAAGTA 59.255 45.455 0.00 0.00 0.00 2.24
2374 3874 3.189702 GCGCTTGGAATGGTTGTAAGTAA 59.810 43.478 0.00 0.00 0.00 2.24
2375 3875 4.320641 GCGCTTGGAATGGTTGTAAGTAAA 60.321 41.667 0.00 0.00 0.00 2.01
2376 3876 5.621329 GCGCTTGGAATGGTTGTAAGTAAAT 60.621 40.000 0.00 0.00 0.00 1.40
2377 3877 6.403855 GCGCTTGGAATGGTTGTAAGTAAATA 60.404 38.462 0.00 0.00 0.00 1.40
2378 3878 6.964934 CGCTTGGAATGGTTGTAAGTAAATAC 59.035 38.462 0.00 0.00 0.00 1.89
2379 3879 6.964934 GCTTGGAATGGTTGTAAGTAAATACG 59.035 38.462 0.00 0.00 0.00 3.06
2380 3880 6.988622 TGGAATGGTTGTAAGTAAATACGG 57.011 37.500 0.00 0.00 0.00 4.02
2381 3881 5.881443 TGGAATGGTTGTAAGTAAATACGGG 59.119 40.000 0.00 0.00 0.00 5.28
2382 3882 5.297527 GGAATGGTTGTAAGTAAATACGGGG 59.702 44.000 0.00 0.00 0.00 5.73
2383 3883 5.697082 ATGGTTGTAAGTAAATACGGGGA 57.303 39.130 0.00 0.00 0.00 4.81
2384 3884 5.697082 TGGTTGTAAGTAAATACGGGGAT 57.303 39.130 0.00 0.00 0.00 3.85
2385 3885 5.430007 TGGTTGTAAGTAAATACGGGGATG 58.570 41.667 0.00 0.00 0.00 3.51
2391 3891 3.649843 AGTAAATACGGGGATGTCCAGA 58.350 45.455 0.86 0.00 37.91 3.86
2408 3908 4.022762 GTCCAGAAGAAGAAAAGAAAGGCC 60.023 45.833 0.00 0.00 0.00 5.19
2440 3947 1.985116 GTCAGGGCGACTTCCTCCT 60.985 63.158 0.00 0.00 41.81 3.69
2480 3987 2.041115 CCTCTGCTGACGACCTCGA 61.041 63.158 0.78 0.00 43.02 4.04
2811 4325 0.246360 ATTGTGGTCTGCATCGACGA 59.754 50.000 0.00 0.00 34.75 4.20
2818 4332 0.526310 TCTGCATCGACGACATCTGC 60.526 55.000 12.96 12.96 0.00 4.26
2962 4476 1.199097 GATTCGTTCAACGGCAATGGT 59.801 47.619 10.69 0.00 42.81 3.55
2974 4488 2.794631 CGGCAATGGTTTCGCCTTTATC 60.795 50.000 0.00 0.00 43.95 1.75
3070 4584 2.884639 CCGTCATTTTCTCCTTTGGTGT 59.115 45.455 0.00 0.00 0.00 4.16
3079 4593 3.173151 TCTCCTTTGGTGTCTGCTATGA 58.827 45.455 0.00 0.00 0.00 2.15
3177 4693 2.223782 GCTGATGTTCCTGTGTGCAAAA 60.224 45.455 0.00 0.00 0.00 2.44
3178 4694 3.737663 GCTGATGTTCCTGTGTGCAAAAA 60.738 43.478 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.096849 CGTCTTCAGTCCTAGCTAGAAAAC 58.903 45.833 22.70 15.77 0.00 2.43
1 2 5.008331 TCGTCTTCAGTCCTAGCTAGAAAA 58.992 41.667 22.70 4.40 0.00 2.29
2 3 4.586884 TCGTCTTCAGTCCTAGCTAGAAA 58.413 43.478 22.70 7.01 0.00 2.52
3 4 4.217836 TCGTCTTCAGTCCTAGCTAGAA 57.782 45.455 22.70 0.00 0.00 2.10
4 5 3.908643 TCGTCTTCAGTCCTAGCTAGA 57.091 47.619 22.70 5.59 0.00 2.43
5 6 3.880490 ACATCGTCTTCAGTCCTAGCTAG 59.120 47.826 14.20 14.20 0.00 3.42
6 7 3.887352 ACATCGTCTTCAGTCCTAGCTA 58.113 45.455 0.00 0.00 0.00 3.32
7 8 2.729194 ACATCGTCTTCAGTCCTAGCT 58.271 47.619 0.00 0.00 0.00 3.32
8 9 3.119459 TGAACATCGTCTTCAGTCCTAGC 60.119 47.826 0.00 0.00 0.00 3.42
9 10 4.703645 TGAACATCGTCTTCAGTCCTAG 57.296 45.455 0.00 0.00 0.00 3.02
10 11 4.321750 GGTTGAACATCGTCTTCAGTCCTA 60.322 45.833 0.00 0.00 0.00 2.94
11 12 3.555168 GGTTGAACATCGTCTTCAGTCCT 60.555 47.826 0.00 0.00 0.00 3.85
12 13 2.737252 GGTTGAACATCGTCTTCAGTCC 59.263 50.000 0.00 0.00 0.00 3.85
13 14 2.737252 GGGTTGAACATCGTCTTCAGTC 59.263 50.000 0.00 0.00 0.00 3.51
14 15 2.767505 GGGTTGAACATCGTCTTCAGT 58.232 47.619 0.00 0.00 0.00 3.41
15 16 1.726791 CGGGTTGAACATCGTCTTCAG 59.273 52.381 0.00 0.00 0.00 3.02
16 17 1.069513 ACGGGTTGAACATCGTCTTCA 59.930 47.619 9.47 0.00 0.00 3.02
17 18 1.792006 ACGGGTTGAACATCGTCTTC 58.208 50.000 9.47 0.00 0.00 2.87
18 19 2.249844 AACGGGTTGAACATCGTCTT 57.750 45.000 14.22 0.58 34.60 3.01
19 20 1.871039 CAAACGGGTTGAACATCGTCT 59.129 47.619 14.22 0.84 39.87 4.18
20 21 1.600485 ACAAACGGGTTGAACATCGTC 59.400 47.619 13.64 0.00 39.87 4.20
21 22 1.332375 CACAAACGGGTTGAACATCGT 59.668 47.619 13.64 9.47 39.87 3.73
22 23 1.332375 ACACAAACGGGTTGAACATCG 59.668 47.619 13.64 8.35 39.87 3.84
23 24 3.430333 AACACAAACGGGTTGAACATC 57.570 42.857 13.64 0.00 39.87 3.06
24 25 3.878160 AAACACAAACGGGTTGAACAT 57.122 38.095 13.64 0.00 39.87 2.71
25 26 3.662247 AAAACACAAACGGGTTGAACA 57.338 38.095 13.64 0.00 39.87 3.18
26 27 5.400703 TCTTAAAACACAAACGGGTTGAAC 58.599 37.500 13.64 0.00 39.87 3.18
27 28 5.640189 TCTTAAAACACAAACGGGTTGAA 57.360 34.783 13.64 0.00 39.87 2.69
28 29 5.357314 TGATCTTAAAACACAAACGGGTTGA 59.643 36.000 13.64 0.00 39.87 3.18
29 30 5.583495 TGATCTTAAAACACAAACGGGTTG 58.417 37.500 3.79 3.79 43.43 3.77
30 31 5.838531 TGATCTTAAAACACAAACGGGTT 57.161 34.783 0.00 0.00 0.00 4.11
31 32 5.533154 TGATGATCTTAAAACACAAACGGGT 59.467 36.000 0.00 0.00 0.00 5.28
32 33 5.856455 GTGATGATCTTAAAACACAAACGGG 59.144 40.000 0.00 0.00 0.00 5.28
33 34 6.668323 AGTGATGATCTTAAAACACAAACGG 58.332 36.000 0.00 0.00 0.00 4.44
34 35 8.495949 ACTAGTGATGATCTTAAAACACAAACG 58.504 33.333 0.00 0.00 0.00 3.60
35 36 9.599322 CACTAGTGATGATCTTAAAACACAAAC 57.401 33.333 18.45 0.00 0.00 2.93
36 37 9.554395 TCACTAGTGATGATCTTAAAACACAAA 57.446 29.630 21.74 0.00 34.14 2.83
37 38 9.208022 CTCACTAGTGATGATCTTAAAACACAA 57.792 33.333 25.35 0.00 39.13 3.33
38 39 7.819415 CCTCACTAGTGATGATCTTAAAACACA 59.181 37.037 25.35 0.00 39.13 3.72
39 40 8.035394 TCCTCACTAGTGATGATCTTAAAACAC 58.965 37.037 25.35 0.00 39.13 3.32
40 41 8.134202 TCCTCACTAGTGATGATCTTAAAACA 57.866 34.615 25.35 0.91 39.13 2.83
41 42 8.254508 ACTCCTCACTAGTGATGATCTTAAAAC 58.745 37.037 25.35 0.00 39.13 2.43
42 43 8.253810 CACTCCTCACTAGTGATGATCTTAAAA 58.746 37.037 25.35 4.22 45.89 1.52
43 44 7.147828 CCACTCCTCACTAGTGATGATCTTAAA 60.148 40.741 25.35 4.89 45.89 1.52
44 45 6.322456 CCACTCCTCACTAGTGATGATCTTAA 59.678 42.308 25.35 5.56 45.89 1.85
45 46 5.830457 CCACTCCTCACTAGTGATGATCTTA 59.170 44.000 25.35 6.23 45.89 2.10
46 47 4.648762 CCACTCCTCACTAGTGATGATCTT 59.351 45.833 25.35 12.24 45.89 2.40
47 48 4.214310 CCACTCCTCACTAGTGATGATCT 58.786 47.826 25.35 12.88 45.89 2.75
48 49 3.957497 ACCACTCCTCACTAGTGATGATC 59.043 47.826 25.35 0.00 45.89 2.92
49 50 3.703556 CACCACTCCTCACTAGTGATGAT 59.296 47.826 25.35 14.35 45.89 2.45
50 51 3.092301 CACCACTCCTCACTAGTGATGA 58.908 50.000 25.35 24.59 45.89 2.92
51 52 3.092301 TCACCACTCCTCACTAGTGATG 58.908 50.000 25.35 21.89 45.89 3.07
52 53 3.458044 TCACCACTCCTCACTAGTGAT 57.542 47.619 25.35 8.46 45.89 3.06
53 54 2.971901 TCACCACTCCTCACTAGTGA 57.028 50.000 23.80 23.80 45.89 3.41
54 55 3.092301 TGATCACCACTCCTCACTAGTG 58.908 50.000 17.17 17.17 43.26 2.74
55 56 3.093057 GTGATCACCACTCCTCACTAGT 58.907 50.000 15.31 0.00 42.44 2.57
56 57 2.098280 CGTGATCACCACTCCTCACTAG 59.902 54.545 20.03 0.00 43.53 2.57
57 58 2.092323 CGTGATCACCACTCCTCACTA 58.908 52.381 20.03 0.00 43.53 2.74
58 59 0.891373 CGTGATCACCACTCCTCACT 59.109 55.000 20.03 0.00 43.53 3.41
59 60 0.737715 GCGTGATCACCACTCCTCAC 60.738 60.000 20.03 0.00 43.53 3.51
60 61 1.591703 GCGTGATCACCACTCCTCA 59.408 57.895 20.03 0.00 43.53 3.86
61 62 1.153549 GGCGTGATCACCACTCCTC 60.154 63.158 20.03 1.22 45.02 3.71
62 63 2.982130 GGCGTGATCACCACTCCT 59.018 61.111 20.03 0.00 45.02 3.69
64 65 2.205074 CATAAGGCGTGATCACCACTC 58.795 52.381 20.03 7.19 43.53 3.51
65 66 1.743772 GCATAAGGCGTGATCACCACT 60.744 52.381 20.03 14.72 43.53 4.00
66 67 0.657840 GCATAAGGCGTGATCACCAC 59.342 55.000 20.03 12.69 42.30 4.16
67 68 0.463654 GGCATAAGGCGTGATCACCA 60.464 55.000 20.03 1.09 46.16 4.17
68 69 0.463654 TGGCATAAGGCGTGATCACC 60.464 55.000 20.03 12.32 46.16 4.02
69 70 1.597742 ATGGCATAAGGCGTGATCAC 58.402 50.000 16.21 16.21 46.16 3.06
70 71 2.346766 AATGGCATAAGGCGTGATCA 57.653 45.000 0.00 0.00 46.16 2.92
71 72 2.859806 GCAAATGGCATAAGGCGTGATC 60.860 50.000 0.00 0.00 46.16 2.92
72 73 1.067516 GCAAATGGCATAAGGCGTGAT 59.932 47.619 0.00 0.00 46.16 3.06
73 74 0.455410 GCAAATGGCATAAGGCGTGA 59.545 50.000 0.00 0.00 46.16 4.35
74 75 2.962089 GCAAATGGCATAAGGCGTG 58.038 52.632 0.00 0.00 46.16 5.34
84 85 4.514816 ACACTTTATTTGGTTGCAAATGGC 59.485 37.500 0.00 0.00 45.13 4.40
85 86 6.928492 ACTACACTTTATTTGGTTGCAAATGG 59.072 34.615 0.00 0.00 36.35 3.16
86 87 7.945033 ACTACACTTTATTTGGTTGCAAATG 57.055 32.000 0.00 0.00 36.35 2.32
87 88 8.825745 CAAACTACACTTTATTTGGTTGCAAAT 58.174 29.630 0.00 0.00 38.25 2.32
88 89 7.819900 ACAAACTACACTTTATTTGGTTGCAAA 59.180 29.630 0.00 0.00 36.55 3.68
89 90 7.324178 ACAAACTACACTTTATTTGGTTGCAA 58.676 30.769 0.00 0.00 36.55 4.08
90 91 6.868622 ACAAACTACACTTTATTTGGTTGCA 58.131 32.000 0.00 0.00 36.55 4.08
91 92 7.200455 AGACAAACTACACTTTATTTGGTTGC 58.800 34.615 0.00 0.00 36.55 4.17
94 95 9.398538 TGTTAGACAAACTACACTTTATTTGGT 57.601 29.630 0.00 0.00 38.99 3.67
100 101 8.918658 CGCTATTGTTAGACAAACTACACTTTA 58.081 33.333 0.00 0.00 41.96 1.85
101 102 7.654520 TCGCTATTGTTAGACAAACTACACTTT 59.345 33.333 0.00 0.00 41.96 2.66
102 103 7.115947 GTCGCTATTGTTAGACAAACTACACTT 59.884 37.037 0.00 0.00 41.96 3.16
103 104 6.585322 GTCGCTATTGTTAGACAAACTACACT 59.415 38.462 0.00 0.00 41.96 3.55
104 105 6.452090 CGTCGCTATTGTTAGACAAACTACAC 60.452 42.308 0.00 0.00 41.96 2.90
105 106 5.570206 CGTCGCTATTGTTAGACAAACTACA 59.430 40.000 0.00 0.00 41.96 2.74
106 107 5.498226 GCGTCGCTATTGTTAGACAAACTAC 60.498 44.000 10.68 0.00 41.96 2.73
107 108 4.560035 GCGTCGCTATTGTTAGACAAACTA 59.440 41.667 10.68 0.00 41.96 2.24
108 109 3.367025 GCGTCGCTATTGTTAGACAAACT 59.633 43.478 10.68 0.00 41.96 2.66
109 110 3.122278 TGCGTCGCTATTGTTAGACAAAC 59.878 43.478 19.50 0.00 41.96 2.93
110 111 3.318886 TGCGTCGCTATTGTTAGACAAA 58.681 40.909 19.50 0.00 41.96 2.83
111 112 2.921121 CTGCGTCGCTATTGTTAGACAA 59.079 45.455 19.50 0.00 42.95 3.18
112 113 2.162809 TCTGCGTCGCTATTGTTAGACA 59.837 45.455 19.50 0.00 33.56 3.41
113 114 2.530700 GTCTGCGTCGCTATTGTTAGAC 59.469 50.000 19.50 16.07 0.00 2.59
114 115 2.162809 TGTCTGCGTCGCTATTGTTAGA 59.837 45.455 19.50 7.92 0.00 2.10
115 116 2.526077 TGTCTGCGTCGCTATTGTTAG 58.474 47.619 19.50 5.44 0.00 2.34
116 117 2.640346 TGTCTGCGTCGCTATTGTTA 57.360 45.000 19.50 0.00 0.00 2.41
117 118 1.459592 GTTGTCTGCGTCGCTATTGTT 59.540 47.619 19.50 0.00 0.00 2.83
118 119 1.068474 GTTGTCTGCGTCGCTATTGT 58.932 50.000 19.50 0.00 0.00 2.71
119 120 0.370273 GGTTGTCTGCGTCGCTATTG 59.630 55.000 19.50 6.30 0.00 1.90
120 121 0.037697 TGGTTGTCTGCGTCGCTATT 60.038 50.000 19.50 0.00 0.00 1.73
121 122 0.736325 GTGGTTGTCTGCGTCGCTAT 60.736 55.000 19.50 0.00 0.00 2.97
122 123 1.372499 GTGGTTGTCTGCGTCGCTA 60.372 57.895 19.50 3.59 0.00 4.26
123 124 2.661866 GTGGTTGTCTGCGTCGCT 60.662 61.111 19.50 0.00 0.00 4.93
124 125 2.964925 TGTGGTTGTCTGCGTCGC 60.965 61.111 11.10 11.10 0.00 5.19
125 126 1.880796 TGTGTGGTTGTCTGCGTCG 60.881 57.895 0.00 0.00 0.00 5.12
126 127 1.641677 GTGTGTGGTTGTCTGCGTC 59.358 57.895 0.00 0.00 0.00 5.19
127 128 1.817941 GGTGTGTGGTTGTCTGCGT 60.818 57.895 0.00 0.00 0.00 5.24
128 129 2.881266 CGGTGTGTGGTTGTCTGCG 61.881 63.158 0.00 0.00 0.00 5.18
129 130 3.022287 CGGTGTGTGGTTGTCTGC 58.978 61.111 0.00 0.00 0.00 4.26
130 131 2.881266 CGCGGTGTGTGGTTGTCTG 61.881 63.158 0.00 0.00 0.00 3.51
131 132 2.587753 CGCGGTGTGTGGTTGTCT 60.588 61.111 0.00 0.00 0.00 3.41
132 133 3.645975 CCGCGGTGTGTGGTTGTC 61.646 66.667 19.50 0.00 43.63 3.18
138 139 2.409152 AATTTTTACCGCGGTGTGTG 57.591 45.000 40.02 8.88 0.00 3.82
139 140 3.140623 AGTAATTTTTACCGCGGTGTGT 58.859 40.909 40.02 20.30 0.00 3.72
140 141 3.817148 AGTAATTTTTACCGCGGTGTG 57.183 42.857 40.02 10.17 0.00 3.82
141 142 3.814283 TGAAGTAATTTTTACCGCGGTGT 59.186 39.130 40.02 18.06 0.00 4.16
142 143 4.399978 CTGAAGTAATTTTTACCGCGGTG 58.600 43.478 40.02 14.60 0.00 4.94
143 144 3.120095 GCTGAAGTAATTTTTACCGCGGT 60.120 43.478 36.01 36.01 0.00 5.68
144 145 3.422655 GCTGAAGTAATTTTTACCGCGG 58.577 45.455 26.86 26.86 0.00 6.46
145 146 3.126343 AGGCTGAAGTAATTTTTACCGCG 59.874 43.478 0.00 0.00 0.00 6.46
146 147 4.155280 TGAGGCTGAAGTAATTTTTACCGC 59.845 41.667 0.00 0.00 0.00 5.68
147 148 5.873179 TGAGGCTGAAGTAATTTTTACCG 57.127 39.130 0.00 0.00 0.00 4.02
148 149 7.602753 ACATTGAGGCTGAAGTAATTTTTACC 58.397 34.615 0.00 0.00 0.00 2.85
149 150 9.774742 CTACATTGAGGCTGAAGTAATTTTTAC 57.225 33.333 0.00 0.00 0.00 2.01
150 151 9.515226 ACTACATTGAGGCTGAAGTAATTTTTA 57.485 29.630 0.00 0.00 0.00 1.52
151 152 8.409358 ACTACATTGAGGCTGAAGTAATTTTT 57.591 30.769 0.00 0.00 0.00 1.94
152 153 7.665559 TGACTACATTGAGGCTGAAGTAATTTT 59.334 33.333 0.00 0.00 0.00 1.82
153 154 7.168219 TGACTACATTGAGGCTGAAGTAATTT 58.832 34.615 0.00 0.00 0.00 1.82
154 155 6.711277 TGACTACATTGAGGCTGAAGTAATT 58.289 36.000 0.00 0.00 0.00 1.40
155 156 6.299805 TGACTACATTGAGGCTGAAGTAAT 57.700 37.500 0.00 0.00 0.00 1.89
156 157 5.738619 TGACTACATTGAGGCTGAAGTAA 57.261 39.130 0.00 0.00 0.00 2.24
157 158 5.479306 GTTGACTACATTGAGGCTGAAGTA 58.521 41.667 0.00 0.00 0.00 2.24
158 159 4.319177 GTTGACTACATTGAGGCTGAAGT 58.681 43.478 0.00 0.00 0.00 3.01
159 160 3.686726 GGTTGACTACATTGAGGCTGAAG 59.313 47.826 0.00 0.00 0.00 3.02
160 161 3.072330 TGGTTGACTACATTGAGGCTGAA 59.928 43.478 0.00 0.00 0.00 3.02
161 162 2.637382 TGGTTGACTACATTGAGGCTGA 59.363 45.455 0.00 0.00 0.00 4.26
162 163 3.057969 TGGTTGACTACATTGAGGCTG 57.942 47.619 0.00 0.00 0.00 4.85
163 164 3.788227 TTGGTTGACTACATTGAGGCT 57.212 42.857 0.00 0.00 0.00 4.58
164 165 3.821033 AGTTTGGTTGACTACATTGAGGC 59.179 43.478 0.00 0.00 0.00 4.70
165 166 6.481954 GTAGTTTGGTTGACTACATTGAGG 57.518 41.667 8.98 0.00 45.52 3.86
172 173 5.880054 ATGCATGTAGTTTGGTTGACTAC 57.120 39.130 0.00 7.32 46.09 2.73
173 174 7.109501 ACATATGCATGTAGTTTGGTTGACTA 58.890 34.615 10.16 0.00 43.74 2.59
174 175 5.945784 ACATATGCATGTAGTTTGGTTGACT 59.054 36.000 10.16 0.00 43.74 3.41
175 176 6.194796 ACATATGCATGTAGTTTGGTTGAC 57.805 37.500 10.16 0.00 43.74 3.18
176 177 6.832520 AACATATGCATGTAGTTTGGTTGA 57.167 33.333 10.16 0.00 44.83 3.18
177 178 7.089538 TCAAACATATGCATGTAGTTTGGTTG 58.910 34.615 30.96 22.34 44.83 3.77
178 179 7.225784 TCAAACATATGCATGTAGTTTGGTT 57.774 32.000 30.96 16.16 44.83 3.67
179 180 6.832520 TCAAACATATGCATGTAGTTTGGT 57.167 33.333 30.96 12.35 44.83 3.67
180 181 8.706492 AAATCAAACATATGCATGTAGTTTGG 57.294 30.769 30.96 21.31 44.83 3.28
183 184 8.658609 GCAAAAATCAAACATATGCATGTAGTT 58.341 29.630 10.16 8.35 44.83 2.24
184 185 7.818446 TGCAAAAATCAAACATATGCATGTAGT 59.182 29.630 10.16 1.83 44.83 2.73
185 186 8.187354 TGCAAAAATCAAACATATGCATGTAG 57.813 30.769 10.16 1.13 44.83 2.74
190 191 8.719560 ATGTATGCAAAAATCAAACATATGCA 57.280 26.923 1.58 0.00 45.16 3.96
195 196 9.090692 GAGCTAATGTATGCAAAAATCAAACAT 57.909 29.630 0.00 0.00 0.00 2.71
196 197 8.087136 TGAGCTAATGTATGCAAAAATCAAACA 58.913 29.630 0.00 0.00 0.00 2.83
197 198 8.464770 TGAGCTAATGTATGCAAAAATCAAAC 57.535 30.769 0.00 0.00 0.00 2.93
198 199 9.486497 TTTGAGCTAATGTATGCAAAAATCAAA 57.514 25.926 0.00 9.05 31.46 2.69
199 200 8.924691 GTTTGAGCTAATGTATGCAAAAATCAA 58.075 29.630 0.00 0.00 0.00 2.57
200 201 8.087136 TGTTTGAGCTAATGTATGCAAAAATCA 58.913 29.630 0.00 0.00 0.00 2.57
201 202 8.464770 TGTTTGAGCTAATGTATGCAAAAATC 57.535 30.769 0.00 0.00 0.00 2.17
202 203 7.546667 CCTGTTTGAGCTAATGTATGCAAAAAT 59.453 33.333 0.00 0.00 0.00 1.82
203 204 6.867816 CCTGTTTGAGCTAATGTATGCAAAAA 59.132 34.615 0.00 0.00 0.00 1.94
204 205 6.389091 CCTGTTTGAGCTAATGTATGCAAAA 58.611 36.000 0.00 0.00 0.00 2.44
205 206 5.622007 GCCTGTTTGAGCTAATGTATGCAAA 60.622 40.000 0.00 0.00 0.00 3.68
206 207 4.142403 GCCTGTTTGAGCTAATGTATGCAA 60.142 41.667 0.00 0.00 0.00 4.08
207 208 3.378112 GCCTGTTTGAGCTAATGTATGCA 59.622 43.478 0.00 0.00 0.00 3.96
208 209 3.378112 TGCCTGTTTGAGCTAATGTATGC 59.622 43.478 0.00 0.00 0.00 3.14
209 210 5.565592 TTGCCTGTTTGAGCTAATGTATG 57.434 39.130 0.00 0.00 0.00 2.39
210 211 6.588719 TTTTGCCTGTTTGAGCTAATGTAT 57.411 33.333 0.00 0.00 0.00 2.29
211 212 6.588719 ATTTTGCCTGTTTGAGCTAATGTA 57.411 33.333 0.00 0.00 0.00 2.29
212 213 4.935352 TTTTGCCTGTTTGAGCTAATGT 57.065 36.364 0.00 0.00 0.00 2.71
213 214 5.349543 GGAATTTTGCCTGTTTGAGCTAATG 59.650 40.000 0.00 0.00 0.00 1.90
214 215 5.246883 AGGAATTTTGCCTGTTTGAGCTAAT 59.753 36.000 0.00 0.00 33.59 1.73
215 216 4.588528 AGGAATTTTGCCTGTTTGAGCTAA 59.411 37.500 0.00 0.00 33.59 3.09
216 217 4.151883 AGGAATTTTGCCTGTTTGAGCTA 58.848 39.130 0.00 0.00 33.59 3.32
217 218 2.967887 AGGAATTTTGCCTGTTTGAGCT 59.032 40.909 0.00 0.00 33.59 4.09
218 219 3.391506 AGGAATTTTGCCTGTTTGAGC 57.608 42.857 0.00 0.00 33.59 4.26
219 220 7.279758 TGTTTTTAGGAATTTTGCCTGTTTGAG 59.720 33.333 0.00 0.00 36.96 3.02
220 221 7.106239 TGTTTTTAGGAATTTTGCCTGTTTGA 58.894 30.769 0.00 0.00 36.96 2.69
221 222 7.313951 TGTTTTTAGGAATTTTGCCTGTTTG 57.686 32.000 0.00 0.00 36.96 2.93
222 223 7.929941 TTGTTTTTAGGAATTTTGCCTGTTT 57.070 28.000 0.00 0.00 36.96 2.83
223 224 7.826744 TCTTTGTTTTTAGGAATTTTGCCTGTT 59.173 29.630 0.00 0.00 36.96 3.16
224 225 7.334858 TCTTTGTTTTTAGGAATTTTGCCTGT 58.665 30.769 0.00 0.00 36.96 4.00
225 226 7.784633 TCTTTGTTTTTAGGAATTTTGCCTG 57.215 32.000 0.00 0.00 36.96 4.85
226 227 7.992608 ACATCTTTGTTTTTAGGAATTTTGCCT 59.007 29.630 0.00 0.00 34.22 4.75
227 228 8.153479 ACATCTTTGTTTTTAGGAATTTTGCC 57.847 30.769 0.00 0.00 29.55 4.52
228 229 8.825745 TGACATCTTTGTTTTTAGGAATTTTGC 58.174 29.630 0.00 0.00 35.79 3.68
231 232 9.325198 GGTTGACATCTTTGTTTTTAGGAATTT 57.675 29.630 0.00 0.00 35.79 1.82
232 233 8.482128 TGGTTGACATCTTTGTTTTTAGGAATT 58.518 29.630 0.00 0.00 35.79 2.17
233 234 8.017418 TGGTTGACATCTTTGTTTTTAGGAAT 57.983 30.769 0.00 0.00 35.79 3.01
234 235 7.411486 TGGTTGACATCTTTGTTTTTAGGAA 57.589 32.000 0.00 0.00 35.79 3.36
235 236 7.411486 TTGGTTGACATCTTTGTTTTTAGGA 57.589 32.000 0.00 0.00 35.79 2.94
236 237 7.253950 CGTTTGGTTGACATCTTTGTTTTTAGG 60.254 37.037 0.00 0.00 35.79 2.69
237 238 7.608755 CGTTTGGTTGACATCTTTGTTTTTAG 58.391 34.615 0.00 0.00 35.79 1.85
238 239 6.035112 GCGTTTGGTTGACATCTTTGTTTTTA 59.965 34.615 0.00 0.00 35.79 1.52
239 240 5.163903 GCGTTTGGTTGACATCTTTGTTTTT 60.164 36.000 0.00 0.00 35.79 1.94
240 241 4.328712 GCGTTTGGTTGACATCTTTGTTTT 59.671 37.500 0.00 0.00 35.79 2.43
241 242 3.862845 GCGTTTGGTTGACATCTTTGTTT 59.137 39.130 0.00 0.00 35.79 2.83
242 243 3.443976 GCGTTTGGTTGACATCTTTGTT 58.556 40.909 0.00 0.00 35.79 2.83
243 244 2.540769 CGCGTTTGGTTGACATCTTTGT 60.541 45.455 0.00 0.00 39.32 2.83
244 245 2.043411 CGCGTTTGGTTGACATCTTTG 58.957 47.619 0.00 0.00 0.00 2.77
245 246 1.673920 ACGCGTTTGGTTGACATCTTT 59.326 42.857 5.58 0.00 0.00 2.52
246 247 1.263217 GACGCGTTTGGTTGACATCTT 59.737 47.619 15.53 0.00 0.00 2.40
247 248 0.865769 GACGCGTTTGGTTGACATCT 59.134 50.000 15.53 0.00 0.00 2.90
248 249 0.584396 TGACGCGTTTGGTTGACATC 59.416 50.000 15.53 0.00 0.00 3.06
249 250 1.234821 ATGACGCGTTTGGTTGACAT 58.765 45.000 15.53 6.59 0.00 3.06
250 251 1.867166 TATGACGCGTTTGGTTGACA 58.133 45.000 15.53 3.95 0.00 3.58
251 252 2.158841 ACATATGACGCGTTTGGTTGAC 59.841 45.455 15.53 0.00 0.00 3.18
252 253 2.158645 CACATATGACGCGTTTGGTTGA 59.841 45.455 15.53 0.00 0.00 3.18
253 254 2.504868 CACATATGACGCGTTTGGTTG 58.495 47.619 15.53 10.73 0.00 3.77
254 255 1.466950 CCACATATGACGCGTTTGGTT 59.533 47.619 15.53 0.00 0.00 3.67
255 256 1.083489 CCACATATGACGCGTTTGGT 58.917 50.000 15.53 5.11 0.00 3.67
256 257 1.364721 TCCACATATGACGCGTTTGG 58.635 50.000 15.53 13.28 0.00 3.28
257 258 3.673746 AATCCACATATGACGCGTTTG 57.326 42.857 15.53 11.85 0.00 2.93
258 259 4.083003 ACAAAATCCACATATGACGCGTTT 60.083 37.500 15.53 7.09 0.00 3.60
259 260 3.438781 ACAAAATCCACATATGACGCGTT 59.561 39.130 15.53 0.00 0.00 4.84
260 261 3.006940 ACAAAATCCACATATGACGCGT 58.993 40.909 13.85 13.85 0.00 6.01
261 262 3.607439 GACAAAATCCACATATGACGCG 58.393 45.455 10.38 3.53 0.00 6.01
274 275 6.096001 ACCATAGATGCAAGAAGGACAAAATC 59.904 38.462 0.00 0.00 0.00 2.17
275 276 5.954150 ACCATAGATGCAAGAAGGACAAAAT 59.046 36.000 0.00 0.00 0.00 1.82
276 277 5.324409 ACCATAGATGCAAGAAGGACAAAA 58.676 37.500 0.00 0.00 0.00 2.44
277 278 4.922206 ACCATAGATGCAAGAAGGACAAA 58.078 39.130 0.00 0.00 0.00 2.83
278 279 4.225942 AGACCATAGATGCAAGAAGGACAA 59.774 41.667 0.00 0.00 0.00 3.18
279 280 3.776969 AGACCATAGATGCAAGAAGGACA 59.223 43.478 0.00 0.00 0.00 4.02
280 281 4.125703 CAGACCATAGATGCAAGAAGGAC 58.874 47.826 0.00 0.00 0.00 3.85
281 282 3.776969 ACAGACCATAGATGCAAGAAGGA 59.223 43.478 0.00 0.00 0.00 3.36
282 283 4.125703 GACAGACCATAGATGCAAGAAGG 58.874 47.826 0.00 0.00 0.00 3.46
283 284 5.021033 AGACAGACCATAGATGCAAGAAG 57.979 43.478 0.00 0.00 0.00 2.85
284 285 6.544928 TTAGACAGACCATAGATGCAAGAA 57.455 37.500 0.00 0.00 0.00 2.52
285 286 6.737720 ATTAGACAGACCATAGATGCAAGA 57.262 37.500 0.00 0.00 0.00 3.02
286 287 8.893219 TTAATTAGACAGACCATAGATGCAAG 57.107 34.615 0.00 0.00 0.00 4.01
287 288 9.851686 ATTTAATTAGACAGACCATAGATGCAA 57.148 29.630 0.00 0.00 0.00 4.08
288 289 9.494271 GATTTAATTAGACAGACCATAGATGCA 57.506 33.333 0.00 0.00 0.00 3.96
289 290 9.717942 AGATTTAATTAGACAGACCATAGATGC 57.282 33.333 0.00 0.00 0.00 3.91
295 296 8.928448 TCAGCTAGATTTAATTAGACAGACCAT 58.072 33.333 0.00 0.00 0.00 3.55
296 297 8.306313 TCAGCTAGATTTAATTAGACAGACCA 57.694 34.615 0.00 0.00 0.00 4.02
297 298 9.771534 ATTCAGCTAGATTTAATTAGACAGACC 57.228 33.333 0.00 0.00 0.00 3.85
310 311 9.453572 TTTTCATGTACTCATTCAGCTAGATTT 57.546 29.630 0.00 0.00 31.15 2.17
311 312 9.453572 TTTTTCATGTACTCATTCAGCTAGATT 57.546 29.630 0.00 0.00 31.15 2.40
339 340 9.772973 ACACAACTAAATTATGTACAGAACTCA 57.227 29.630 4.80 0.00 0.00 3.41
341 342 9.555727 ACACACAACTAAATTATGTACAGAACT 57.444 29.630 4.80 0.00 0.00 3.01
349 350 9.174166 GAGGGAATACACACAACTAAATTATGT 57.826 33.333 0.00 0.00 0.00 2.29
350 351 8.621286 GGAGGGAATACACACAACTAAATTATG 58.379 37.037 0.00 0.00 0.00 1.90
351 352 8.333235 TGGAGGGAATACACACAACTAAATTAT 58.667 33.333 0.00 0.00 0.00 1.28
352 353 7.691213 TGGAGGGAATACACACAACTAAATTA 58.309 34.615 0.00 0.00 0.00 1.40
353 354 6.548321 TGGAGGGAATACACACAACTAAATT 58.452 36.000 0.00 0.00 0.00 1.82
354 355 6.134535 TGGAGGGAATACACACAACTAAAT 57.865 37.500 0.00 0.00 0.00 1.40
355 356 5.556915 CTGGAGGGAATACACACAACTAAA 58.443 41.667 0.00 0.00 0.00 1.85
356 357 4.564821 GCTGGAGGGAATACACACAACTAA 60.565 45.833 0.00 0.00 0.00 2.24
357 358 3.055385 GCTGGAGGGAATACACACAACTA 60.055 47.826 0.00 0.00 0.00 2.24
358 359 2.290323 GCTGGAGGGAATACACACAACT 60.290 50.000 0.00 0.00 0.00 3.16
359 360 2.084546 GCTGGAGGGAATACACACAAC 58.915 52.381 0.00 0.00 0.00 3.32
360 361 1.004277 GGCTGGAGGGAATACACACAA 59.996 52.381 0.00 0.00 0.00 3.33
361 362 0.618458 GGCTGGAGGGAATACACACA 59.382 55.000 0.00 0.00 0.00 3.72
362 363 0.107165 GGGCTGGAGGGAATACACAC 60.107 60.000 0.00 0.00 0.00 3.82
363 364 1.622607 CGGGCTGGAGGGAATACACA 61.623 60.000 0.00 0.00 0.00 3.72
364 365 1.146263 CGGGCTGGAGGGAATACAC 59.854 63.158 0.00 0.00 0.00 2.90
365 366 2.070039 CCGGGCTGGAGGGAATACA 61.070 63.158 6.48 0.00 42.00 2.29
366 367 2.829592 CCGGGCTGGAGGGAATAC 59.170 66.667 6.48 0.00 42.00 1.89
367 368 3.168528 GCCGGGCTGGAGGGAATA 61.169 66.667 18.84 0.00 42.00 1.75
377 378 1.192146 TGTTTCTACTCAGCCGGGCT 61.192 55.000 17.69 17.69 40.77 5.19
378 379 1.019805 GTGTTTCTACTCAGCCGGGC 61.020 60.000 12.11 12.11 0.00 6.13
379 380 0.736325 CGTGTTTCTACTCAGCCGGG 60.736 60.000 2.18 0.00 0.00 5.73
380 381 0.736325 CCGTGTTTCTACTCAGCCGG 60.736 60.000 0.00 0.00 0.00 6.13
381 382 0.242825 TCCGTGTTTCTACTCAGCCG 59.757 55.000 0.00 0.00 0.00 5.52
382 383 2.271800 CATCCGTGTTTCTACTCAGCC 58.728 52.381 0.00 0.00 0.00 4.85
383 384 2.960819 ACATCCGTGTTTCTACTCAGC 58.039 47.619 0.00 0.00 34.01 4.26
394 395 1.107114 TTGCAACCAAACATCCGTGT 58.893 45.000 0.00 0.00 41.28 4.49
395 396 1.486439 GTTGCAACCAAACATCCGTG 58.514 50.000 19.15 0.00 31.68 4.94
396 397 3.957383 GTTGCAACCAAACATCCGT 57.043 47.368 19.15 0.00 31.68 4.69
407 408 1.228245 TCTCAGCCAGGGTTGCAAC 60.228 57.895 21.59 21.59 0.00 4.17
408 409 1.073722 CTCTCAGCCAGGGTTGCAA 59.926 57.895 0.00 0.00 0.00 4.08
409 410 2.752358 CTCTCAGCCAGGGTTGCA 59.248 61.111 0.00 0.00 0.00 4.08
410 411 2.045536 CCTCTCAGCCAGGGTTGC 60.046 66.667 0.00 0.00 0.00 4.17
411 412 2.673523 CCCTCTCAGCCAGGGTTG 59.326 66.667 0.00 0.00 45.35 3.77
415 416 1.706995 ATGCATCCCTCTCAGCCAGG 61.707 60.000 0.00 0.00 0.00 4.45
416 417 0.535328 CATGCATCCCTCTCAGCCAG 60.535 60.000 0.00 0.00 0.00 4.85
417 418 1.530283 CATGCATCCCTCTCAGCCA 59.470 57.895 0.00 0.00 0.00 4.75
418 419 1.897615 GCATGCATCCCTCTCAGCC 60.898 63.158 14.21 0.00 0.00 4.85
419 420 0.750546 TTGCATGCATCCCTCTCAGC 60.751 55.000 23.37 0.00 0.00 4.26
420 421 1.022735 GTTGCATGCATCCCTCTCAG 58.977 55.000 23.37 0.00 0.00 3.35
421 422 0.394762 GGTTGCATGCATCCCTCTCA 60.395 55.000 29.98 8.35 31.44 3.27
422 423 0.394762 TGGTTGCATGCATCCCTCTC 60.395 55.000 34.32 16.83 35.51 3.20
423 424 0.040058 TTGGTTGCATGCATCCCTCT 59.960 50.000 34.32 0.00 35.51 3.69
424 425 0.896923 TTTGGTTGCATGCATCCCTC 59.103 50.000 34.32 17.43 35.51 4.30
425 426 0.609662 GTTTGGTTGCATGCATCCCT 59.390 50.000 34.32 0.00 35.51 4.20
426 427 0.391528 GGTTTGGTTGCATGCATCCC 60.392 55.000 34.32 28.89 35.51 3.85
427 428 0.321021 TGGTTTGGTTGCATGCATCC 59.679 50.000 32.26 32.26 36.58 3.51
428 429 2.004017 CATGGTTTGGTTGCATGCATC 58.996 47.619 23.37 20.66 0.00 3.91
429 430 1.946747 GCATGGTTTGGTTGCATGCAT 60.947 47.619 23.37 0.00 45.45 3.96
430 431 0.603172 GCATGGTTTGGTTGCATGCA 60.603 50.000 18.46 18.46 45.45 3.96
431 432 1.300266 GGCATGGTTTGGTTGCATGC 61.300 55.000 11.82 11.82 45.42 4.06
432 433 0.674269 GGGCATGGTTTGGTTGCATG 60.674 55.000 0.00 0.00 38.12 4.06
433 434 1.126329 TGGGCATGGTTTGGTTGCAT 61.126 50.000 0.00 0.00 38.12 3.96
434 435 1.126329 ATGGGCATGGTTTGGTTGCA 61.126 50.000 0.00 0.00 38.12 4.08
435 436 0.674269 CATGGGCATGGTTTGGTTGC 60.674 55.000 0.00 0.00 35.24 4.17
436 437 0.975135 TCATGGGCATGGTTTGGTTG 59.025 50.000 0.00 0.00 39.24 3.77
437 438 1.624813 CTTCATGGGCATGGTTTGGTT 59.375 47.619 0.00 0.00 39.24 3.67
438 439 1.203162 TCTTCATGGGCATGGTTTGGT 60.203 47.619 0.00 0.00 39.24 3.67
439 440 1.559368 TCTTCATGGGCATGGTTTGG 58.441 50.000 0.00 0.00 39.24 3.28
440 441 2.564062 AGTTCTTCATGGGCATGGTTTG 59.436 45.455 0.00 0.00 39.24 2.93
441 442 2.893424 AGTTCTTCATGGGCATGGTTT 58.107 42.857 0.00 0.00 39.24 3.27
442 443 2.610438 AGTTCTTCATGGGCATGGTT 57.390 45.000 0.00 0.00 39.24 3.67
443 444 2.684927 GCTAGTTCTTCATGGGCATGGT 60.685 50.000 0.00 0.00 39.24 3.55
444 445 1.952296 GCTAGTTCTTCATGGGCATGG 59.048 52.381 0.00 0.00 39.24 3.66
445 446 2.877168 GAGCTAGTTCTTCATGGGCATG 59.123 50.000 0.00 0.00 40.09 4.06
446 447 2.507058 TGAGCTAGTTCTTCATGGGCAT 59.493 45.455 8.15 0.00 0.00 4.40
447 448 1.908619 TGAGCTAGTTCTTCATGGGCA 59.091 47.619 8.15 0.00 0.00 5.36
448 449 2.284190 GTGAGCTAGTTCTTCATGGGC 58.716 52.381 8.15 0.00 0.00 5.36
449 450 2.093973 ACGTGAGCTAGTTCTTCATGGG 60.094 50.000 8.15 0.00 0.00 4.00
450 451 3.238108 ACGTGAGCTAGTTCTTCATGG 57.762 47.619 8.15 0.09 0.00 3.66
451 452 3.369147 CCAACGTGAGCTAGTTCTTCATG 59.631 47.826 8.15 7.12 0.00 3.07
452 453 3.006967 ACCAACGTGAGCTAGTTCTTCAT 59.993 43.478 8.15 0.00 0.00 2.57
453 454 2.364324 ACCAACGTGAGCTAGTTCTTCA 59.636 45.455 8.15 0.00 0.00 3.02
454 455 2.731976 CACCAACGTGAGCTAGTTCTTC 59.268 50.000 8.15 0.97 43.14 2.87
455 456 2.364324 TCACCAACGTGAGCTAGTTCTT 59.636 45.455 8.15 0.00 44.20 2.52
456 457 1.961394 TCACCAACGTGAGCTAGTTCT 59.039 47.619 8.15 0.00 44.20 3.01
457 458 2.433868 TCACCAACGTGAGCTAGTTC 57.566 50.000 0.00 0.00 44.20 3.01
469 470 0.030235 GGGAAGCAAACGTCACCAAC 59.970 55.000 0.00 0.00 0.00 3.77
470 471 1.440938 CGGGAAGCAAACGTCACCAA 61.441 55.000 0.00 0.00 0.00 3.67
471 472 1.890041 CGGGAAGCAAACGTCACCA 60.890 57.895 0.00 0.00 0.00 4.17
472 473 2.613506 CCGGGAAGCAAACGTCACC 61.614 63.158 0.00 0.00 0.00 4.02
473 474 2.613506 CCCGGGAAGCAAACGTCAC 61.614 63.158 18.48 0.00 0.00 3.67
474 475 2.281208 CCCGGGAAGCAAACGTCA 60.281 61.111 18.48 0.00 0.00 4.35
475 476 1.167781 TTTCCCGGGAAGCAAACGTC 61.168 55.000 33.64 0.00 35.38 4.34
476 477 0.538746 ATTTCCCGGGAAGCAAACGT 60.539 50.000 33.64 13.48 35.38 3.99
477 478 0.170339 GATTTCCCGGGAAGCAAACG 59.830 55.000 33.64 0.00 35.38 3.60
478 479 1.067846 GTGATTTCCCGGGAAGCAAAC 60.068 52.381 33.64 25.03 35.38 2.93
479 480 1.253100 GTGATTTCCCGGGAAGCAAA 58.747 50.000 33.64 21.17 35.38 3.68
480 481 0.111446 TGTGATTTCCCGGGAAGCAA 59.889 50.000 33.64 21.55 35.38 3.91
481 482 0.331278 ATGTGATTTCCCGGGAAGCA 59.669 50.000 33.64 30.17 35.38 3.91
482 483 2.341846 TATGTGATTTCCCGGGAAGC 57.658 50.000 33.64 28.17 35.38 3.86
483 484 3.886123 ACTTATGTGATTTCCCGGGAAG 58.114 45.455 33.64 21.82 35.38 3.46
484 485 4.013728 CAACTTATGTGATTTCCCGGGAA 58.986 43.478 32.53 32.53 0.00 3.97
485 486 3.009695 ACAACTTATGTGATTTCCCGGGA 59.990 43.478 22.63 22.63 41.93 5.14
486 487 3.352648 ACAACTTATGTGATTTCCCGGG 58.647 45.455 16.85 16.85 41.93 5.73
487 488 4.574828 CCTACAACTTATGTGATTTCCCGG 59.425 45.833 0.00 0.00 43.77 5.73
488 489 4.574828 CCCTACAACTTATGTGATTTCCCG 59.425 45.833 0.00 0.00 43.77 5.14
489 490 4.887655 CCCCTACAACTTATGTGATTTCCC 59.112 45.833 0.00 0.00 43.77 3.97
490 491 4.338400 GCCCCTACAACTTATGTGATTTCC 59.662 45.833 0.00 0.00 43.77 3.13
491 492 4.947388 TGCCCCTACAACTTATGTGATTTC 59.053 41.667 0.00 0.00 43.77 2.17
492 493 4.929479 TGCCCCTACAACTTATGTGATTT 58.071 39.130 0.00 0.00 43.77 2.17
493 494 4.584638 TGCCCCTACAACTTATGTGATT 57.415 40.909 0.00 0.00 43.77 2.57
494 495 4.526970 CTTGCCCCTACAACTTATGTGAT 58.473 43.478 0.00 0.00 43.77 3.06
495 496 3.308117 CCTTGCCCCTACAACTTATGTGA 60.308 47.826 0.00 0.00 43.77 3.58
496 497 3.016736 CCTTGCCCCTACAACTTATGTG 58.983 50.000 0.00 0.00 43.77 3.21
497 498 2.620627 GCCTTGCCCCTACAACTTATGT 60.621 50.000 0.00 0.00 46.36 2.29
498 499 2.024414 GCCTTGCCCCTACAACTTATG 58.976 52.381 0.00 0.00 0.00 1.90
499 500 1.638589 TGCCTTGCCCCTACAACTTAT 59.361 47.619 0.00 0.00 0.00 1.73
500 501 1.004277 CTGCCTTGCCCCTACAACTTA 59.996 52.381 0.00 0.00 0.00 2.24
501 502 0.251341 CTGCCTTGCCCCTACAACTT 60.251 55.000 0.00 0.00 0.00 2.66
502 503 1.133809 TCTGCCTTGCCCCTACAACT 61.134 55.000 0.00 0.00 0.00 3.16
503 504 0.251165 TTCTGCCTTGCCCCTACAAC 60.251 55.000 0.00 0.00 0.00 3.32
504 505 0.480690 TTTCTGCCTTGCCCCTACAA 59.519 50.000 0.00 0.00 0.00 2.41
505 506 0.480690 TTTTCTGCCTTGCCCCTACA 59.519 50.000 0.00 0.00 0.00 2.74
506 507 1.177401 CTTTTCTGCCTTGCCCCTAC 58.823 55.000 0.00 0.00 0.00 3.18
507 508 0.611896 GCTTTTCTGCCTTGCCCCTA 60.612 55.000 0.00 0.00 0.00 3.53
511 512 0.031994 TTTCGCTTTTCTGCCTTGCC 59.968 50.000 0.00 0.00 0.00 4.52
520 521 1.135489 GTCCGGGGATTTTCGCTTTTC 60.135 52.381 0.00 0.00 0.00 2.29
534 535 1.224592 CTTGGAATCCAGGTCCGGG 59.775 63.158 0.00 0.71 38.06 5.73
538 539 3.604582 CACTTCTCTTGGAATCCAGGTC 58.395 50.000 11.29 0.00 33.81 3.85
540 541 2.363683 GCACTTCTCTTGGAATCCAGG 58.636 52.381 4.87 4.87 33.81 4.45
541 542 2.005451 CGCACTTCTCTTGGAATCCAG 58.995 52.381 0.86 0.00 33.81 3.86
542 543 1.623311 TCGCACTTCTCTTGGAATCCA 59.377 47.619 0.00 0.00 33.01 3.41
560 561 2.261671 CGCGGAATAGGGGGATCG 59.738 66.667 0.00 0.00 0.00 3.69
609 610 0.741221 AACGGCAAGCTCGAGAATCC 60.741 55.000 18.75 9.80 0.00 3.01
636 637 2.355837 TCGAGACAGCGTTGCACC 60.356 61.111 0.00 0.00 0.00 5.01
747 748 1.209261 TGTGTTTGTCAGAGAGGCACA 59.791 47.619 3.23 3.23 33.71 4.57
749 750 1.806247 CGTGTGTTTGTCAGAGAGGCA 60.806 52.381 0.00 0.00 0.00 4.75
751 752 0.861837 GCGTGTGTTTGTCAGAGAGG 59.138 55.000 0.00 0.00 0.00 3.69
781 782 1.421485 CGACGGTGAATCAGCTTGC 59.579 57.895 10.85 0.00 0.00 4.01
782 783 1.970917 GCCGACGGTGAATCAGCTTG 61.971 60.000 16.73 0.00 0.00 4.01
783 784 1.741770 GCCGACGGTGAATCAGCTT 60.742 57.895 16.73 0.37 0.00 3.74
895 902 1.002502 GGGAGGGAAACAGGAACCG 60.003 63.158 0.00 0.00 0.00 4.44
902 909 4.344865 GGCAGCGGGAGGGAAACA 62.345 66.667 0.00 0.00 0.00 2.83
966 2415 4.222336 ACCAAGATGACTGAGCTAGCTAT 58.778 43.478 19.38 6.97 0.00 2.97
1017 2493 4.749310 AGGAGCAACAGCGCGGAG 62.749 66.667 16.26 7.48 36.85 4.63
1297 2779 3.444805 GCTCCTCGTCCTCGTGCT 61.445 66.667 0.00 0.00 38.33 4.40
1692 3183 1.305887 CCCCCAGAAGTACGGGTCT 60.306 63.158 3.23 0.00 41.30 3.85
1923 3415 3.005539 GCCCTGAGCTCCTCCACA 61.006 66.667 12.15 0.00 38.99 4.17
2160 3655 4.155826 CACTCGCAACTGGATTTCCATTTA 59.844 41.667 0.00 0.00 46.46 1.40
2179 3674 7.598493 TGCTGGCTAAATTTGTTATTTTCACTC 59.402 33.333 0.00 0.00 0.00 3.51
2183 3678 8.934825 TGAATGCTGGCTAAATTTGTTATTTTC 58.065 29.630 0.00 0.00 0.00 2.29
2200 3697 4.155826 TGAGAATTTAACCGTGAATGCTGG 59.844 41.667 0.00 0.00 0.00 4.85
2201 3698 5.295431 TGAGAATTTAACCGTGAATGCTG 57.705 39.130 0.00 0.00 0.00 4.41
2210 3707 9.619316 TGAATTAACACAATGAGAATTTAACCG 57.381 29.630 0.00 0.00 0.00 4.44
2246 3743 3.369756 TGCAATGGAAACGAGAACGATAC 59.630 43.478 0.00 0.00 42.66 2.24
2256 3753 3.689161 TCAATACTCCTGCAATGGAAACG 59.311 43.478 0.00 0.00 35.43 3.60
2258 3755 4.922206 ACTCAATACTCCTGCAATGGAAA 58.078 39.130 0.00 0.00 35.43 3.13
2259 3756 4.574674 ACTCAATACTCCTGCAATGGAA 57.425 40.909 0.00 0.00 35.43 3.53
2261 3758 5.649782 AAAACTCAATACTCCTGCAATGG 57.350 39.130 0.00 0.00 0.00 3.16
2291 3791 3.660111 GCAACGCGGAGTGCCTTT 61.660 61.111 12.47 0.00 45.12 3.11
2304 3804 4.378874 GCTCCAGTATTCAGTGAAAGCAAC 60.379 45.833 16.48 10.17 35.46 4.17
2319 3819 4.216257 GGTAATAATACGACCGCTCCAGTA 59.784 45.833 0.00 0.00 32.51 2.74
2349 3849 3.747976 AACCATTCCAAGCGCGCC 61.748 61.111 30.33 10.31 0.00 6.53
2350 3850 1.917782 TACAACCATTCCAAGCGCGC 61.918 55.000 26.66 26.66 0.00 6.86
2351 3851 0.519519 TTACAACCATTCCAAGCGCG 59.480 50.000 0.00 0.00 0.00 6.86
2352 3852 1.539827 ACTTACAACCATTCCAAGCGC 59.460 47.619 0.00 0.00 0.00 5.92
2353 3853 5.365403 TTTACTTACAACCATTCCAAGCG 57.635 39.130 0.00 0.00 0.00 4.68
2354 3854 6.964934 CGTATTTACTTACAACCATTCCAAGC 59.035 38.462 0.00 0.00 0.00 4.01
2355 3855 7.414762 CCCGTATTTACTTACAACCATTCCAAG 60.415 40.741 0.00 0.00 0.00 3.61
2356 3856 6.374894 CCCGTATTTACTTACAACCATTCCAA 59.625 38.462 0.00 0.00 0.00 3.53
2357 3857 5.881443 CCCGTATTTACTTACAACCATTCCA 59.119 40.000 0.00 0.00 0.00 3.53
2358 3858 5.297527 CCCCGTATTTACTTACAACCATTCC 59.702 44.000 0.00 0.00 0.00 3.01
2359 3859 6.114767 TCCCCGTATTTACTTACAACCATTC 58.885 40.000 0.00 0.00 0.00 2.67
2360 3860 6.064735 TCCCCGTATTTACTTACAACCATT 57.935 37.500 0.00 0.00 0.00 3.16
2361 3861 5.697082 TCCCCGTATTTACTTACAACCAT 57.303 39.130 0.00 0.00 0.00 3.55
2362 3862 5.045724 ACATCCCCGTATTTACTTACAACCA 60.046 40.000 0.00 0.00 0.00 3.67
2363 3863 5.430886 ACATCCCCGTATTTACTTACAACC 58.569 41.667 0.00 0.00 0.00 3.77
2364 3864 5.525012 GGACATCCCCGTATTTACTTACAAC 59.475 44.000 0.00 0.00 0.00 3.32
2365 3865 5.189342 TGGACATCCCCGTATTTACTTACAA 59.811 40.000 0.00 0.00 34.29 2.41
2366 3866 4.715792 TGGACATCCCCGTATTTACTTACA 59.284 41.667 0.00 0.00 34.29 2.41
2367 3867 5.069516 TCTGGACATCCCCGTATTTACTTAC 59.930 44.000 0.00 0.00 34.29 2.34
2368 3868 5.210430 TCTGGACATCCCCGTATTTACTTA 58.790 41.667 0.00 0.00 34.29 2.24
2369 3869 4.035112 TCTGGACATCCCCGTATTTACTT 58.965 43.478 0.00 0.00 34.29 2.24
2370 3870 3.649843 TCTGGACATCCCCGTATTTACT 58.350 45.455 0.00 0.00 34.29 2.24
2371 3871 4.100498 TCTTCTGGACATCCCCGTATTTAC 59.900 45.833 0.00 0.00 34.29 2.01
2372 3872 4.291792 TCTTCTGGACATCCCCGTATTTA 58.708 43.478 0.00 0.00 34.29 1.40
2373 3873 3.112263 TCTTCTGGACATCCCCGTATTT 58.888 45.455 0.00 0.00 34.29 1.40
2374 3874 2.759355 TCTTCTGGACATCCCCGTATT 58.241 47.619 0.00 0.00 34.29 1.89
2375 3875 2.471815 TCTTCTGGACATCCCCGTAT 57.528 50.000 0.00 0.00 34.29 3.06
2376 3876 2.108168 CTTCTTCTGGACATCCCCGTA 58.892 52.381 0.00 0.00 34.29 4.02
2377 3877 0.905357 CTTCTTCTGGACATCCCCGT 59.095 55.000 0.00 0.00 34.29 5.28
2378 3878 1.195115 TCTTCTTCTGGACATCCCCG 58.805 55.000 0.00 0.00 34.29 5.73
2379 3879 3.721087 TTTCTTCTTCTGGACATCCCC 57.279 47.619 0.00 0.00 34.29 4.81
2380 3880 4.911390 TCTTTTCTTCTTCTGGACATCCC 58.089 43.478 0.00 0.00 34.29 3.85
2381 3881 6.072230 CCTTTCTTTTCTTCTTCTGGACATCC 60.072 42.308 0.00 0.00 0.00 3.51
2382 3882 6.569418 GCCTTTCTTTTCTTCTTCTGGACATC 60.569 42.308 0.00 0.00 0.00 3.06
2383 3883 5.242615 GCCTTTCTTTTCTTCTTCTGGACAT 59.757 40.000 0.00 0.00 0.00 3.06
2384 3884 4.580580 GCCTTTCTTTTCTTCTTCTGGACA 59.419 41.667 0.00 0.00 0.00 4.02
2385 3885 4.022762 GGCCTTTCTTTTCTTCTTCTGGAC 60.023 45.833 0.00 0.00 0.00 4.02
2391 3891 3.057245 GCGATGGCCTTTCTTTTCTTCTT 60.057 43.478 3.32 0.00 0.00 2.52
2423 3930 1.682684 GAGGAGGAAGTCGCCCTGA 60.683 63.158 0.00 0.00 35.80 3.86
2466 3973 2.791927 CGATCGAGGTCGTCAGCA 59.208 61.111 10.26 0.00 40.80 4.41
2480 3987 3.075005 CCCCTCACCACCGACGAT 61.075 66.667 0.00 0.00 0.00 3.73
2518 4025 5.638596 AAACTAAGGCCTAAAACAATCCG 57.361 39.130 5.16 0.00 0.00 4.18
2547 4055 3.701532 TGACGATGAACAACCCAAAAC 57.298 42.857 0.00 0.00 0.00 2.43
2592 4102 7.117092 GGAAGGATCTGAAGATTTATTAGTCGC 59.883 40.741 0.00 0.00 34.37 5.19
2818 4332 2.648059 GAACCCAGATCCACCATCTTG 58.352 52.381 0.00 0.00 40.20 3.02
2939 4453 0.871722 TTGCCGTTGAACGAATCAGG 59.128 50.000 20.47 1.96 46.05 3.86
3070 4584 1.415289 CTCTGGCACCATCATAGCAGA 59.585 52.381 0.00 0.00 0.00 4.26
3099 4613 0.249911 GAGCTTGACACCAACGTCCT 60.250 55.000 0.00 0.00 34.88 3.85
3129 4643 9.516314 AAGAAGTAAAATTACAAACAAGACTGC 57.484 29.630 6.13 0.00 36.12 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.