Multiple sequence alignment - TraesCS2D01G360100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G360100 chr2D 100.000 5270 0 0 1 5270 462196365 462201634 0.000000e+00 9732.0
1 TraesCS2D01G360100 chr2D 88.870 602 23 19 1335 1915 6463059 6463637 0.000000e+00 701.0
2 TraesCS2D01G360100 chr2D 96.085 281 10 1 3374 3654 540821504 540821225 1.730000e-124 457.0
3 TraesCS2D01G360100 chr2D 96.043 278 11 0 3374 3651 590369254 590369531 2.240000e-123 453.0
4 TraesCS2D01G360100 chr2A 92.585 1969 72 32 1 1913 607475084 607477034 0.000000e+00 2760.0
5 TraesCS2D01G360100 chr2A 89.707 1846 87 35 356 2181 610057889 610059651 0.000000e+00 2261.0
6 TraesCS2D01G360100 chr2A 86.702 1707 91 57 3672 5270 607479604 607481282 0.000000e+00 1770.0
7 TraesCS2D01G360100 chr2A 79.181 1441 126 76 2001 3347 607477033 607478393 0.000000e+00 839.0
8 TraesCS2D01G360100 chr2A 92.619 569 19 13 3677 4227 610066243 610066806 0.000000e+00 797.0
9 TraesCS2D01G360100 chr2A 87.480 615 45 13 4678 5270 610114152 610114756 0.000000e+00 680.0
10 TraesCS2D01G360100 chr2A 91.022 323 25 2 1 323 610057573 610057891 2.920000e-117 433.0
11 TraesCS2D01G360100 chr2A 97.255 255 6 1 2918 3172 610063132 610063385 1.050000e-116 431.0
12 TraesCS2D01G360100 chr2A 98.658 149 2 0 4454 4602 610113905 610114053 1.130000e-66 265.0
13 TraesCS2D01G360100 chr2A 84.663 163 17 3 4289 4451 610112836 610112990 7.070000e-34 156.0
14 TraesCS2D01G360100 chr2A 80.120 166 18 8 5005 5157 610115113 610115276 5.580000e-20 110.0
15 TraesCS2D01G360100 chr2A 78.182 165 19 6 5012 5160 607481645 607481808 7.270000e-14 89.8
16 TraesCS2D01G360100 chr2B 91.624 1946 88 33 1 1915 544980666 544982567 0.000000e+00 2621.0
17 TraesCS2D01G360100 chr2B 90.020 992 34 32 3666 4602 544983880 544984861 0.000000e+00 1223.0
18 TraesCS2D01G360100 chr2B 84.246 1333 97 38 2001 3291 544982564 544983825 0.000000e+00 1194.0
19 TraesCS2D01G360100 chr2B 89.801 402 22 8 4678 5064 544984962 544985359 1.020000e-136 497.0
20 TraesCS2D01G360100 chr2B 80.335 478 55 17 4667 5121 544985472 544985933 5.090000e-85 326.0
21 TraesCS2D01G360100 chr6B 89.369 602 38 14 1335 1915 65859556 65860152 0.000000e+00 734.0
22 TraesCS2D01G360100 chr6B 89.333 600 40 12 1335 1915 65835182 65835776 0.000000e+00 732.0
23 TraesCS2D01G360100 chr6B 87.955 440 28 14 2001 2430 33652143 33651719 3.670000e-136 496.0
24 TraesCS2D01G360100 chr6B 90.957 188 12 4 1067 1250 455413805 455413991 1.130000e-61 248.0
25 TraesCS2D01G360100 chr7B 88.040 602 46 15 1335 1915 102782929 102782333 0.000000e+00 689.0
26 TraesCS2D01G360100 chr7B 89.522 439 28 8 2001 2430 333361035 333360606 1.670000e-149 540.0
27 TraesCS2D01G360100 chr7B 95.699 279 11 1 3374 3652 652987936 652987659 1.040000e-121 448.0
28 TraesCS2D01G360100 chr4B 86.877 602 53 15 1335 1915 617874776 617874180 0.000000e+00 651.0
29 TraesCS2D01G360100 chr4B 87.991 433 29 9 2001 2430 617874183 617873771 1.710000e-134 490.0
30 TraesCS2D01G360100 chr4B 88.788 330 18 12 1335 1650 652369823 652369499 2.300000e-103 387.0
31 TraesCS2D01G360100 chr4D 90.423 449 38 4 2068 2516 14581335 14581778 2.110000e-163 586.0
32 TraesCS2D01G360100 chr4D 90.205 439 25 8 2001 2430 462626491 462626920 1.660000e-154 556.0
33 TraesCS2D01G360100 chr4D 89.749 439 27 8 2001 2430 475140534 475140963 3.590000e-151 545.0
34 TraesCS2D01G360100 chr5B 89.805 461 29 9 1335 1782 703105136 703104681 4.580000e-160 575.0
35 TraesCS2D01G360100 chr5B 88.551 428 30 8 2012 2430 703104681 703104264 7.880000e-138 501.0
36 TraesCS2D01G360100 chr7D 89.977 439 26 8 2001 2430 525350931 525351360 7.710000e-153 551.0
37 TraesCS2D01G360100 chr3D 89.749 439 27 8 2001 2430 459311918 459312347 3.590000e-151 545.0
38 TraesCS2D01G360100 chr5D 96.390 277 9 1 3374 3650 545532644 545532369 6.220000e-124 455.0
39 TraesCS2D01G360100 chr5D 95.374 281 13 0 3374 3654 450609045 450608765 1.040000e-121 448.0
40 TraesCS2D01G360100 chr4A 96.057 279 10 1 3374 3652 11843038 11842761 2.240000e-123 453.0
41 TraesCS2D01G360100 chr3B 95.374 281 13 0 3374 3654 17350295 17350575 1.040000e-121 448.0
42 TraesCS2D01G360100 chr1D 95.683 278 11 1 3374 3651 316011330 316011054 3.740000e-121 446.0
43 TraesCS2D01G360100 chrUn 95.341 279 13 0 3374 3652 15683811 15684089 1.350000e-120 444.0
44 TraesCS2D01G360100 chr6D 88.261 230 25 2 4027 4255 292376586 292376814 1.870000e-69 274.0
45 TraesCS2D01G360100 chr6D 89.894 188 14 4 1067 1250 292374744 292374930 2.450000e-58 237.0
46 TraesCS2D01G360100 chr6A 88.546 227 24 2 4030 4255 430341600 430341375 1.870000e-69 274.0
47 TraesCS2D01G360100 chr6A 91.351 185 11 4 1070 1250 430343411 430343228 1.130000e-61 248.0
48 TraesCS2D01G360100 chr6A 85.535 159 19 4 1069 1225 604294903 604295059 4.220000e-36 163.0
49 TraesCS2D01G360100 chr6A 85.535 159 19 4 1069 1225 604384709 604384865 4.220000e-36 163.0
50 TraesCS2D01G360100 chr5A 83.060 183 27 4 1069 1249 531241062 531240882 4.220000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G360100 chr2D 462196365 462201634 5269 False 9732.00 9732 100.00000 1 5270 1 chr2D.!!$F2 5269
1 TraesCS2D01G360100 chr2D 6463059 6463637 578 False 701.00 701 88.87000 1335 1915 1 chr2D.!!$F1 580
2 TraesCS2D01G360100 chr2A 607475084 607481808 6724 False 1364.70 2760 84.16250 1 5270 4 chr2A.!!$F1 5269
3 TraesCS2D01G360100 chr2A 610057573 610066806 9233 False 980.50 2261 92.65075 1 4227 4 chr2A.!!$F2 4226
4 TraesCS2D01G360100 chr2A 610112836 610115276 2440 False 302.75 680 87.73025 4289 5270 4 chr2A.!!$F3 981
5 TraesCS2D01G360100 chr2B 544980666 544985933 5267 False 1172.20 2621 87.20520 1 5121 5 chr2B.!!$F1 5120
6 TraesCS2D01G360100 chr6B 65859556 65860152 596 False 734.00 734 89.36900 1335 1915 1 chr6B.!!$F2 580
7 TraesCS2D01G360100 chr6B 65835182 65835776 594 False 732.00 732 89.33300 1335 1915 1 chr6B.!!$F1 580
8 TraesCS2D01G360100 chr7B 102782333 102782929 596 True 689.00 689 88.04000 1335 1915 1 chr7B.!!$R1 580
9 TraesCS2D01G360100 chr4B 617873771 617874776 1005 True 570.50 651 87.43400 1335 2430 2 chr4B.!!$R2 1095
10 TraesCS2D01G360100 chr5B 703104264 703105136 872 True 538.00 575 89.17800 1335 2430 2 chr5B.!!$R1 1095
11 TraesCS2D01G360100 chr6D 292374744 292376814 2070 False 255.50 274 89.07750 1067 4255 2 chr6D.!!$F1 3188
12 TraesCS2D01G360100 chr6A 430341375 430343411 2036 True 261.00 274 89.94850 1070 4255 2 chr6A.!!$R1 3185

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 423 0.385390 AAAAACAAGCGGGCACTGAG 59.615 50.0 0.00 0.0 36.31 3.35 F
766 810 0.392060 CCGCTAACCCACTAACCCAC 60.392 60.0 0.00 0.0 0.00 4.61 F
865 920 0.610687 GCCGCTATAAGAGGAGGCAT 59.389 55.0 0.45 0.0 45.41 4.40 F
1261 1328 0.867753 CATCAGTACGTCTCCAGCGC 60.868 60.0 0.00 0.0 0.00 5.92 F
2733 5892 0.462047 CCGATTCAGGGCAGTACCAC 60.462 60.0 0.00 0.0 42.05 4.16 F
2912 6077 0.037326 TGTTGTCTGTCTCGGCATCC 60.037 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 1751 0.737219 GCACAGCATTGTCATCTCCC 59.263 55.0 0.00 0.0 34.62 4.30 R
2456 3007 0.175760 TGGGCTTAAGTGCGAGCTAG 59.824 55.0 4.02 0.0 38.89 3.42 R
2713 5872 0.907704 TGGTACTGCCCTGAATCGGT 60.908 55.0 0.00 0.0 36.04 4.69 R
2894 6059 0.037326 TGGATGCCGAGACAGACAAC 60.037 55.0 0.00 0.0 0.00 3.32 R
3652 10894 0.034756 TTCCACATCCACACGGTCAG 59.965 55.0 0.00 0.0 0.00 3.51 R
4306 11629 0.107897 TATGTAGGTTGGCGGCACAG 60.108 55.0 12.92 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.135664 AAAAGTGTCCAGAGACGACG 57.864 50.000 0.00 0.00 46.74 5.12
160 168 4.082190 ACTGAGATTAAGCTGTTCGTGCTA 60.082 41.667 0.00 0.00 40.22 3.49
162 170 4.174009 GAGATTAAGCTGTTCGTGCTACA 58.826 43.478 0.00 0.00 40.22 2.74
163 171 4.759782 AGATTAAGCTGTTCGTGCTACAT 58.240 39.130 0.00 0.00 40.22 2.29
166 174 5.966636 TTAAGCTGTTCGTGCTACATATG 57.033 39.130 0.00 0.00 40.22 1.78
202 210 1.442769 ATAACAAGTGCACTGGAGCG 58.557 50.000 28.22 12.78 37.31 5.03
209 217 1.003959 TGCACTGGAGCGCACATAA 60.004 52.632 11.47 0.00 37.31 1.90
251 259 3.337398 GCAAGAGCTCGATCGAGTT 57.663 52.632 37.59 34.52 43.70 3.01
275 287 4.080919 TCTCCAAACAGAATCCGATGTCAT 60.081 41.667 0.00 0.00 0.00 3.06
294 306 5.587443 TGTCATTCTCATCACATGAACATCC 59.413 40.000 0.00 0.00 39.11 3.51
340 352 8.504005 GTGCAAATGTTTTTCTAGCTAGACTAA 58.496 33.333 23.17 16.48 30.81 2.24
341 353 8.721478 TGCAAATGTTTTTCTAGCTAGACTAAG 58.279 33.333 23.17 8.79 30.81 2.18
342 354 8.936864 GCAAATGTTTTTCTAGCTAGACTAAGA 58.063 33.333 23.17 17.18 30.81 2.10
345 357 9.825109 AATGTTTTTCTAGCTAGACTAAGATCC 57.175 33.333 23.17 8.62 30.81 3.36
346 358 8.596781 TGTTTTTCTAGCTAGACTAAGATCCT 57.403 34.615 23.17 0.00 30.81 3.24
348 360 8.688151 GTTTTTCTAGCTAGACTAAGATCCTCA 58.312 37.037 23.17 1.02 30.81 3.86
349 361 9.427821 TTTTTCTAGCTAGACTAAGATCCTCAT 57.572 33.333 23.17 0.00 30.81 2.90
352 364 7.750655 TCTAGCTAGACTAAGATCCTCATGAA 58.249 38.462 19.72 0.00 0.00 2.57
391 412 9.727403 GAAACGAGAAAAGAAAAGAAAAACAAG 57.273 29.630 0.00 0.00 0.00 3.16
392 413 7.278211 ACGAGAAAAGAAAAGAAAAACAAGC 57.722 32.000 0.00 0.00 0.00 4.01
393 414 6.033513 ACGAGAAAAGAAAAGAAAAACAAGCG 59.966 34.615 0.00 0.00 0.00 4.68
396 417 2.821546 AGAAAAGAAAAACAAGCGGGC 58.178 42.857 0.00 0.00 0.00 6.13
397 418 2.167487 AGAAAAGAAAAACAAGCGGGCA 59.833 40.909 0.00 0.00 0.00 5.36
398 419 1.934589 AAAGAAAAACAAGCGGGCAC 58.065 45.000 0.00 0.00 0.00 5.01
402 423 0.385390 AAAAACAAGCGGGCACTGAG 59.615 50.000 0.00 0.00 36.31 3.35
403 424 1.455383 AAAACAAGCGGGCACTGAGG 61.455 55.000 0.00 0.00 36.31 3.86
404 425 2.624674 AAACAAGCGGGCACTGAGGT 62.625 55.000 0.00 0.00 36.31 3.85
405 426 2.281761 CAAGCGGGCACTGAGGTT 60.282 61.111 0.00 0.00 36.31 3.50
406 427 2.281761 AAGCGGGCACTGAGGTTG 60.282 61.111 0.00 0.00 36.31 3.77
407 428 3.850098 AAGCGGGCACTGAGGTTGG 62.850 63.158 0.00 0.00 36.31 3.77
409 430 4.641645 CGGGCACTGAGGTTGGCA 62.642 66.667 0.00 0.00 36.31 4.92
410 431 2.985847 GGGCACTGAGGTTGGCAC 60.986 66.667 0.00 0.00 0.00 5.01
411 432 2.985847 GGCACTGAGGTTGGCACC 60.986 66.667 0.00 0.00 44.67 5.01
765 809 1.555477 CCCGCTAACCCACTAACCCA 61.555 60.000 0.00 0.00 0.00 4.51
766 810 0.392060 CCGCTAACCCACTAACCCAC 60.392 60.000 0.00 0.00 0.00 4.61
767 811 0.611714 CGCTAACCCACTAACCCACT 59.388 55.000 0.00 0.00 0.00 4.00
768 812 1.674817 CGCTAACCCACTAACCCACTG 60.675 57.143 0.00 0.00 0.00 3.66
865 920 0.610687 GCCGCTATAAGAGGAGGCAT 59.389 55.000 0.45 0.00 45.41 4.40
1024 1085 2.896443 CTTGCTCTCCGGTCCTCC 59.104 66.667 0.00 0.00 0.00 4.30
1025 1086 1.684049 CTTGCTCTCCGGTCCTCCT 60.684 63.158 0.00 0.00 0.00 3.69
1026 1087 1.671901 CTTGCTCTCCGGTCCTCCTC 61.672 65.000 0.00 0.00 0.00 3.71
1233 1300 1.271856 TCTCCAACGGCCTCAACATA 58.728 50.000 0.00 0.00 0.00 2.29
1261 1328 0.867753 CATCAGTACGTCTCCAGCGC 60.868 60.000 0.00 0.00 0.00 5.92
1309 1441 1.342275 ACAGCATGCCTCTCTCTCTCT 60.342 52.381 15.66 0.00 42.53 3.10
1311 1443 1.216175 AGCATGCCTCTCTCTCTCTCT 59.784 52.381 15.66 0.00 0.00 3.10
1319 1451 4.035208 GCCTCTCTCTCTCTCTTTCGTTAG 59.965 50.000 0.00 0.00 0.00 2.34
1353 1485 1.532437 CGAGCAGTTCTTGACATTGCA 59.468 47.619 0.00 0.00 37.24 4.08
1354 1486 2.663879 CGAGCAGTTCTTGACATTGCAC 60.664 50.000 0.00 0.00 37.24 4.57
1355 1487 1.265095 AGCAGTTCTTGACATTGCACG 59.735 47.619 0.00 0.00 37.24 5.34
1484 1616 2.100631 CGGCATCCTCAACGACACC 61.101 63.158 0.00 0.00 0.00 4.16
1556 1750 8.449085 AGTACGTATCTATATGAAATGCAACG 57.551 34.615 0.00 0.00 0.00 4.10
1557 1751 6.706055 ACGTATCTATATGAAATGCAACGG 57.294 37.500 0.00 0.00 0.00 4.44
1582 1781 1.081906 GACAATGCTGTGCGTGTGG 60.082 57.895 3.93 0.00 35.30 4.17
1609 1808 2.554142 GTGAACATCATCAGGATCGCA 58.446 47.619 0.00 0.00 32.57 5.10
1840 2048 5.019785 AGAAAGTCCTCGCGGTAATTTAT 57.980 39.130 6.13 0.00 0.00 1.40
1946 2165 4.646040 CACTCCATCCAAAATGCCAAGATA 59.354 41.667 0.00 0.00 0.00 1.98
1983 2202 6.587206 TTCAGCATAATCCAACAAACATGA 57.413 33.333 0.00 0.00 0.00 3.07
1984 2203 6.778834 TCAGCATAATCCAACAAACATGAT 57.221 33.333 0.00 0.00 0.00 2.45
1985 2204 7.172868 TCAGCATAATCCAACAAACATGATT 57.827 32.000 0.00 0.00 0.00 2.57
1986 2205 8.291191 TCAGCATAATCCAACAAACATGATTA 57.709 30.769 0.00 0.00 35.02 1.75
2069 2288 8.547967 TTGTCTTCTATTTTGTCAGTATGGTC 57.452 34.615 0.00 0.00 36.16 4.02
2082 2301 5.047235 GTCAGTATGGTCTACAAGAGTGGTT 60.047 44.000 0.00 0.00 36.16 3.67
2244 2713 2.480416 GCACCGGTGAACATTTGTTTGA 60.480 45.455 38.30 0.00 38.56 2.69
2351 2901 2.092429 ACTGTTTCTGGCAAGAGTTGGA 60.092 45.455 0.00 0.00 32.79 3.53
2447 2998 4.265073 GAGGCTGAATCCAAACACAGTAT 58.735 43.478 0.00 0.00 33.57 2.12
2448 2999 4.265073 AGGCTGAATCCAAACACAGTATC 58.735 43.478 0.00 0.00 33.57 2.24
2456 3007 9.906660 TGAATCCAAACACAGTATCAAATTTAC 57.093 29.630 0.00 0.00 0.00 2.01
2477 5604 1.671054 GCTCGCACTTAAGCCCACA 60.671 57.895 1.29 0.00 32.22 4.17
2511 5640 3.657015 AGATCACTCGCATCCATAGTG 57.343 47.619 0.00 0.00 41.58 2.74
2520 5649 2.479275 CGCATCCATAGTGCATTCTCAG 59.521 50.000 0.00 0.00 42.62 3.35
2523 5652 4.024218 GCATCCATAGTGCATTCTCAGTTC 60.024 45.833 0.00 0.00 42.08 3.01
2537 5666 5.453567 TCTCAGTTCGAGATGAGTTTTCA 57.546 39.130 21.48 6.18 46.18 2.69
2538 5667 5.465051 TCTCAGTTCGAGATGAGTTTTCAG 58.535 41.667 21.48 3.47 46.18 3.02
2539 5668 5.010112 TCTCAGTTCGAGATGAGTTTTCAGT 59.990 40.000 21.48 0.00 46.18 3.41
2540 5669 5.223382 TCAGTTCGAGATGAGTTTTCAGTC 58.777 41.667 0.00 0.00 36.61 3.51
2542 5671 5.118357 CAGTTCGAGATGAGTTTTCAGTCAG 59.882 44.000 0.00 0.00 35.73 3.51
2543 5672 4.855715 TCGAGATGAGTTTTCAGTCAGT 57.144 40.909 0.00 0.00 35.73 3.41
2566 5695 9.915629 CAGTAGTGGTACTCCTATTTCATAATC 57.084 37.037 0.00 0.00 37.40 1.75
2578 5709 8.976353 TCCTATTTCATAATCCAGCTAGAGATC 58.024 37.037 0.00 0.00 0.00 2.75
2596 5727 6.656902 AGAGATCAGGCATCATCAACTTAAA 58.343 36.000 0.00 0.00 33.29 1.52
2597 5728 6.766944 AGAGATCAGGCATCATCAACTTAAAG 59.233 38.462 0.00 0.00 33.29 1.85
2600 5731 4.637534 TCAGGCATCATCAACTTAAAGAGC 59.362 41.667 0.00 0.00 0.00 4.09
2601 5732 4.639310 CAGGCATCATCAACTTAAAGAGCT 59.361 41.667 0.00 0.00 0.00 4.09
2603 5734 4.637534 GGCATCATCAACTTAAAGAGCTCA 59.362 41.667 17.77 0.00 0.00 4.26
2611 5767 5.356751 TCAACTTAAAGAGCTCAAAACAGCA 59.643 36.000 17.77 0.00 42.40 4.41
2644 5800 8.980481 ATGTTCTACCCATAGTATTTCCAAAG 57.020 34.615 0.00 0.00 0.00 2.77
2645 5801 7.924541 TGTTCTACCCATAGTATTTCCAAAGT 58.075 34.615 0.00 0.00 0.00 2.66
2646 5802 9.049050 TGTTCTACCCATAGTATTTCCAAAGTA 57.951 33.333 0.00 0.00 0.00 2.24
2647 5803 9.543783 GTTCTACCCATAGTATTTCCAAAGTAG 57.456 37.037 0.00 0.00 0.00 2.57
2648 5804 8.849543 TCTACCCATAGTATTTCCAAAGTAGT 57.150 34.615 0.00 0.00 0.00 2.73
2649 5805 9.940974 TCTACCCATAGTATTTCCAAAGTAGTA 57.059 33.333 0.00 0.00 0.00 1.82
2671 5827 8.511465 AGTAGTACCGCAATATTTACATTACG 57.489 34.615 0.00 0.00 0.00 3.18
2678 5834 5.449304 GCAATATTTACATTACGTGGAGCC 58.551 41.667 0.00 0.00 0.00 4.70
2713 5872 7.461749 ACTCCTACATTGAAAGGAAATGAAGA 58.538 34.615 11.77 0.00 41.33 2.87
2717 5876 5.070001 ACATTGAAAGGAAATGAAGACCGA 58.930 37.500 3.32 0.00 38.21 4.69
2721 5880 5.312895 TGAAAGGAAATGAAGACCGATTCA 58.687 37.500 0.00 0.00 43.04 2.57
2722 5881 5.412594 TGAAAGGAAATGAAGACCGATTCAG 59.587 40.000 0.00 0.00 42.20 3.02
2723 5882 3.878778 AGGAAATGAAGACCGATTCAGG 58.121 45.455 4.44 0.00 42.20 3.86
2724 5883 2.945668 GGAAATGAAGACCGATTCAGGG 59.054 50.000 4.44 0.00 42.20 4.45
2725 5884 2.044123 AATGAAGACCGATTCAGGGC 57.956 50.000 4.44 0.00 42.20 5.19
2733 5892 0.462047 CCGATTCAGGGCAGTACCAC 60.462 60.000 0.00 0.00 42.05 4.16
2735 5894 1.338674 CGATTCAGGGCAGTACCACAA 60.339 52.381 0.00 0.00 42.05 3.33
2746 5905 3.365364 GCAGTACCACAACTCTTTGCATC 60.365 47.826 0.00 0.00 36.00 3.91
2768 5927 2.686915 GGTGCAGATCTGAAATCCTTGG 59.313 50.000 27.04 0.00 0.00 3.61
2783 5942 8.145767 TGAAATCCTTGGCATTTATGATTCATC 58.854 33.333 1.55 0.00 0.00 2.92
2784 5943 7.606135 AATCCTTGGCATTTATGATTCATCA 57.394 32.000 1.55 0.00 41.70 3.07
2786 5945 8.888836 ATCCTTGGCATTTATGATTCATCATA 57.111 30.769 1.55 5.53 45.17 2.15
2787 5946 8.114331 TCCTTGGCATTTATGATTCATCATAC 57.886 34.615 8.73 0.00 46.28 2.39
2802 5964 2.298610 TCATACTAGGCTCCAGTGACG 58.701 52.381 0.00 0.00 0.00 4.35
2868 6033 5.455392 CGAGAAAACTCAGTTCTTACCGTA 58.545 41.667 0.00 0.00 35.46 4.02
2869 6034 5.568296 CGAGAAAACTCAGTTCTTACCGTAG 59.432 44.000 0.00 0.00 35.46 3.51
2870 6035 5.780984 AGAAAACTCAGTTCTTACCGTAGG 58.219 41.667 0.00 0.00 43.14 3.18
2871 6036 5.279356 AGAAAACTCAGTTCTTACCGTAGGG 60.279 44.000 0.00 0.00 42.17 3.53
2894 6059 1.002274 AGGGAGGGCTGGAGTAGTG 59.998 63.158 0.00 0.00 0.00 2.74
2895 6060 1.306226 GGGAGGGCTGGAGTAGTGT 60.306 63.158 0.00 0.00 0.00 3.55
2912 6077 0.037326 TGTTGTCTGTCTCGGCATCC 60.037 55.000 0.00 0.00 0.00 3.51
3194 9226 2.592222 CGCTCGATCGTGCATGCAT 61.592 57.895 33.34 8.04 34.68 3.96
3195 9227 1.082951 GCTCGATCGTGCATGCATG 60.083 57.895 30.97 30.20 35.06 4.06
3218 9261 1.001048 CCTTCGTCTTCGTGTGTGGTA 60.001 52.381 0.00 0.00 38.33 3.25
3284 9336 1.602771 GTGGGTAGAGGCTTGGGTC 59.397 63.158 0.00 0.00 0.00 4.46
3338 9398 2.740055 CGCGAGCTGCTTGGTCTT 60.740 61.111 18.18 0.00 43.27 3.01
3339 9399 2.866028 GCGAGCTGCTTGGTCTTG 59.134 61.111 18.18 0.00 40.75 3.02
3340 9400 1.963338 GCGAGCTGCTTGGTCTTGT 60.963 57.895 18.18 0.00 40.75 3.16
3341 9401 1.905922 GCGAGCTGCTTGGTCTTGTC 61.906 60.000 18.18 0.00 40.75 3.18
3342 9402 0.320247 CGAGCTGCTTGGTCTTGTCT 60.320 55.000 9.11 0.00 40.75 3.41
3343 9403 1.067565 CGAGCTGCTTGGTCTTGTCTA 60.068 52.381 9.11 0.00 40.75 2.59
3344 9404 2.610479 CGAGCTGCTTGGTCTTGTCTAA 60.610 50.000 9.11 0.00 40.75 2.10
3345 9405 2.999355 GAGCTGCTTGGTCTTGTCTAAG 59.001 50.000 2.53 0.00 39.86 2.18
3366 10608 6.839820 AAGTTGTCTTACACCGAAAGTAAG 57.160 37.500 12.48 12.48 46.11 2.34
3372 10614 4.525912 TTACACCGAAAGTAAGAGTCCC 57.474 45.455 0.00 0.00 0.00 4.46
3373 10615 2.606378 ACACCGAAAGTAAGAGTCCCT 58.394 47.619 0.00 0.00 0.00 4.20
3374 10616 2.299297 ACACCGAAAGTAAGAGTCCCTG 59.701 50.000 0.00 0.00 0.00 4.45
3375 10617 2.299297 CACCGAAAGTAAGAGTCCCTGT 59.701 50.000 0.00 0.00 0.00 4.00
3376 10618 2.970640 ACCGAAAGTAAGAGTCCCTGTT 59.029 45.455 0.00 0.00 0.00 3.16
3377 10619 3.390311 ACCGAAAGTAAGAGTCCCTGTTT 59.610 43.478 0.00 0.00 0.00 2.83
3378 10620 3.746492 CCGAAAGTAAGAGTCCCTGTTTG 59.254 47.826 0.00 0.00 0.00 2.93
3379 10621 4.377897 CGAAAGTAAGAGTCCCTGTTTGT 58.622 43.478 0.00 0.00 0.00 2.83
3380 10622 4.814771 CGAAAGTAAGAGTCCCTGTTTGTT 59.185 41.667 0.00 0.00 0.00 2.83
3381 10623 5.296035 CGAAAGTAAGAGTCCCTGTTTGTTT 59.704 40.000 0.00 0.00 0.00 2.83
3382 10624 6.511282 CGAAAGTAAGAGTCCCTGTTTGTTTC 60.511 42.308 0.00 0.00 0.00 2.78
3383 10625 4.715713 AGTAAGAGTCCCTGTTTGTTTCC 58.284 43.478 0.00 0.00 0.00 3.13
3384 10626 3.662759 AAGAGTCCCTGTTTGTTTCCA 57.337 42.857 0.00 0.00 0.00 3.53
3385 10627 3.662759 AGAGTCCCTGTTTGTTTCCAA 57.337 42.857 0.00 0.00 0.00 3.53
3386 10628 3.555966 AGAGTCCCTGTTTGTTTCCAAG 58.444 45.455 0.00 0.00 0.00 3.61
3387 10629 2.623416 GAGTCCCTGTTTGTTTCCAAGG 59.377 50.000 0.00 0.00 0.00 3.61
3388 10630 2.243736 AGTCCCTGTTTGTTTCCAAGGA 59.756 45.455 0.00 0.00 0.00 3.36
3389 10631 2.361119 GTCCCTGTTTGTTTCCAAGGAC 59.639 50.000 0.00 0.00 35.98 3.85
3390 10632 2.243736 TCCCTGTTTGTTTCCAAGGACT 59.756 45.455 0.00 0.00 0.00 3.85
3391 10633 3.031013 CCCTGTTTGTTTCCAAGGACTT 58.969 45.455 0.00 0.00 0.00 3.01
3392 10634 4.079672 TCCCTGTTTGTTTCCAAGGACTTA 60.080 41.667 0.00 0.00 0.00 2.24
3393 10635 4.832823 CCCTGTTTGTTTCCAAGGACTTAT 59.167 41.667 0.00 0.00 0.00 1.73
3394 10636 5.304357 CCCTGTTTGTTTCCAAGGACTTATT 59.696 40.000 0.00 0.00 0.00 1.40
3395 10637 6.492087 CCCTGTTTGTTTCCAAGGACTTATTA 59.508 38.462 0.00 0.00 0.00 0.98
3396 10638 7.309194 CCCTGTTTGTTTCCAAGGACTTATTAG 60.309 40.741 0.00 0.00 0.00 1.73
3397 10639 7.230712 CCTGTTTGTTTCCAAGGACTTATTAGT 59.769 37.037 0.00 0.00 37.31 2.24
3398 10640 8.528044 TGTTTGTTTCCAAGGACTTATTAGTT 57.472 30.769 0.00 0.00 33.84 2.24
3399 10641 8.973182 TGTTTGTTTCCAAGGACTTATTAGTTT 58.027 29.630 0.00 0.00 33.84 2.66
3402 10644 8.857694 TGTTTCCAAGGACTTATTAGTTTAGG 57.142 34.615 0.00 0.00 33.84 2.69
3403 10645 7.886446 TGTTTCCAAGGACTTATTAGTTTAGGG 59.114 37.037 0.00 0.00 33.84 3.53
3404 10646 7.817910 TTCCAAGGACTTATTAGTTTAGGGA 57.182 36.000 0.00 0.00 33.84 4.20
3405 10647 7.191593 TCCAAGGACTTATTAGTTTAGGGAC 57.808 40.000 0.00 0.00 33.84 4.46
3406 10648 6.964086 TCCAAGGACTTATTAGTTTAGGGACT 59.036 38.462 0.00 0.00 37.29 3.85
3407 10649 7.460082 TCCAAGGACTTATTAGTTTAGGGACTT 59.540 37.037 0.00 0.00 35.34 3.01
3408 10650 8.765517 CCAAGGACTTATTAGTTTAGGGACTTA 58.234 37.037 0.00 0.00 35.34 2.24
3432 10674 6.910259 AAAAAGTCCCTATAAGTCCCATCT 57.090 37.500 0.00 0.00 0.00 2.90
3434 10676 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
3435 10677 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
3436 10678 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
3437 10679 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
3438 10680 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
3439 10681 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
3440 10682 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
3441 10683 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
3442 10684 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
3443 10685 7.499232 CCTATAAGTCCCATCTAAACCAAACAG 59.501 40.741 0.00 0.00 0.00 3.16
3444 10686 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
3445 10687 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
3446 10688 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
3447 10689 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
3448 10690 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
3449 10691 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
3450 10692 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
3452 10694 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
3453 10695 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
3454 10696 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
3455 10697 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
3456 10698 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
3457 10699 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
3458 10700 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
3459 10701 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
3460 10702 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
3461 10703 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
3462 10704 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
3463 10705 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
3464 10706 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
3465 10707 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
3466 10708 6.386050 CAGGAGGGACTTATAGGGACTTAAAA 59.614 42.308 0.00 0.00 41.55 1.52
3467 10709 7.072581 CAGGAGGGACTTATAGGGACTTAAAAT 59.927 40.741 0.00 0.00 41.55 1.82
3468 10710 7.072581 AGGAGGGACTTATAGGGACTTAAAATG 59.927 40.741 0.00 0.00 41.55 2.32
3469 10711 7.150447 AGGGACTTATAGGGACTTAAAATGG 57.850 40.000 0.00 0.00 34.75 3.16
3470 10712 6.102762 AGGGACTTATAGGGACTTAAAATGGG 59.897 42.308 0.00 0.00 34.75 4.00
3471 10713 5.768662 GGACTTATAGGGACTTAAAATGGGC 59.231 44.000 0.00 0.00 41.75 5.36
3472 10714 6.335781 ACTTATAGGGACTTAAAATGGGCA 57.664 37.500 0.00 0.00 41.75 5.36
3473 10715 6.922540 ACTTATAGGGACTTAAAATGGGCAT 58.077 36.000 0.00 0.00 41.75 4.40
3474 10716 7.362234 ACTTATAGGGACTTAAAATGGGCATT 58.638 34.615 0.00 0.00 41.75 3.56
3475 10717 7.844269 ACTTATAGGGACTTAAAATGGGCATTT 59.156 33.333 0.00 0.00 40.54 2.32
3476 10718 4.824479 AGGGACTTAAAATGGGCATTTG 57.176 40.909 0.00 0.00 36.76 2.32
3477 10719 3.519107 AGGGACTTAAAATGGGCATTTGG 59.481 43.478 0.00 0.00 36.76 3.28
3478 10720 3.370421 GGGACTTAAAATGGGCATTTGGG 60.370 47.826 0.00 0.00 40.57 4.12
3479 10721 3.517500 GGACTTAAAATGGGCATTTGGGA 59.482 43.478 0.00 0.00 40.57 4.37
3480 10722 4.503910 GACTTAAAATGGGCATTTGGGAC 58.496 43.478 0.00 0.00 40.57 4.46
3481 10723 4.167319 ACTTAAAATGGGCATTTGGGACT 58.833 39.130 0.00 0.00 40.57 3.85
3482 10724 4.597075 ACTTAAAATGGGCATTTGGGACTT 59.403 37.500 0.00 0.00 40.57 3.01
3483 10725 5.782845 ACTTAAAATGGGCATTTGGGACTTA 59.217 36.000 0.00 0.00 40.57 2.24
3484 10726 6.443527 ACTTAAAATGGGCATTTGGGACTTAT 59.556 34.615 0.00 0.00 40.57 1.73
3485 10727 4.758773 AAATGGGCATTTGGGACTTATG 57.241 40.909 0.00 0.00 39.36 1.90
3486 10728 3.686227 ATGGGCATTTGGGACTTATGA 57.314 42.857 0.00 0.00 0.00 2.15
3487 10729 3.464720 TGGGCATTTGGGACTTATGAA 57.535 42.857 0.00 0.00 0.00 2.57
3488 10730 3.784178 TGGGCATTTGGGACTTATGAAA 58.216 40.909 0.00 0.00 0.00 2.69
3489 10731 4.360889 TGGGCATTTGGGACTTATGAAAT 58.639 39.130 0.00 0.00 0.00 2.17
3490 10732 5.523588 TGGGCATTTGGGACTTATGAAATA 58.476 37.500 0.00 0.00 0.00 1.40
3491 10733 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
3518 10760 6.793505 TCTCAAGGAGAGTTTTATAGGGAC 57.206 41.667 0.00 0.00 44.98 4.46
3519 10761 6.503944 TCTCAAGGAGAGTTTTATAGGGACT 58.496 40.000 0.00 0.00 44.98 3.85
3520 10762 6.960542 TCTCAAGGAGAGTTTTATAGGGACTT 59.039 38.462 0.00 0.00 44.98 3.01
3521 10763 8.120538 TCTCAAGGAGAGTTTTATAGGGACTTA 58.879 37.037 0.00 0.00 44.98 2.24
3522 10764 8.855804 TCAAGGAGAGTTTTATAGGGACTTAT 57.144 34.615 0.00 0.00 41.75 1.73
3523 10765 9.947189 TCAAGGAGAGTTTTATAGGGACTTATA 57.053 33.333 0.00 0.00 41.75 0.98
3525 10767 9.954992 AAGGAGAGTTTTATAGGGACTTATAGT 57.045 33.333 0.00 0.00 41.75 2.12
3526 10768 9.954992 AGGAGAGTTTTATAGGGACTTATAGTT 57.045 33.333 0.00 0.00 41.75 2.24
3527 10769 9.984190 GGAGAGTTTTATAGGGACTTATAGTTG 57.016 37.037 0.00 0.00 41.75 3.16
3539 10781 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
3546 10788 8.792830 ATAGTTGTAATATGGTCTTACAGGGA 57.207 34.615 0.00 0.00 39.51 4.20
3547 10789 6.885922 AGTTGTAATATGGTCTTACAGGGAC 58.114 40.000 0.00 0.00 39.51 4.46
3548 10790 6.672657 AGTTGTAATATGGTCTTACAGGGACT 59.327 38.462 0.00 0.00 39.51 3.85
3549 10791 7.182206 AGTTGTAATATGGTCTTACAGGGACTT 59.818 37.037 0.00 0.00 39.51 3.01
3550 10792 8.480501 GTTGTAATATGGTCTTACAGGGACTTA 58.519 37.037 0.00 0.00 39.51 2.24
3551 10793 8.792830 TGTAATATGGTCTTACAGGGACTTAT 57.207 34.615 0.00 0.00 34.60 1.73
3552 10794 9.886337 TGTAATATGGTCTTACAGGGACTTATA 57.114 33.333 0.00 0.00 34.60 0.98
3555 10797 9.448587 AATATGGTCTTACAGGGACTTATAAGT 57.551 33.333 18.05 18.05 43.16 2.24
3556 10798 7.750947 ATGGTCTTACAGGGACTTATAAGTT 57.249 36.000 18.96 5.85 39.88 2.66
3557 10799 7.563724 TGGTCTTACAGGGACTTATAAGTTT 57.436 36.000 18.96 6.07 39.88 2.66
3558 10800 7.618137 TGGTCTTACAGGGACTTATAAGTTTC 58.382 38.462 18.96 13.74 39.88 2.78
3559 10801 7.236019 TGGTCTTACAGGGACTTATAAGTTTCA 59.764 37.037 18.96 0.37 39.88 2.69
3560 10802 7.764901 GGTCTTACAGGGACTTATAAGTTTCAG 59.235 40.741 18.96 12.86 39.88 3.02
3561 10803 7.764901 GTCTTACAGGGACTTATAAGTTTCAGG 59.235 40.741 18.96 10.58 39.88 3.86
3562 10804 7.676893 TCTTACAGGGACTTATAAGTTTCAGGA 59.323 37.037 18.96 6.08 39.88 3.86
3563 10805 6.697641 ACAGGGACTTATAAGTTTCAGGAA 57.302 37.500 18.96 0.00 39.88 3.36
3564 10806 7.272144 ACAGGGACTTATAAGTTTCAGGAAT 57.728 36.000 18.96 0.00 39.88 3.01
3565 10807 7.339482 ACAGGGACTTATAAGTTTCAGGAATC 58.661 38.462 18.96 3.46 39.88 2.52
3566 10808 7.037586 ACAGGGACTTATAAGTTTCAGGAATCA 60.038 37.037 18.96 0.00 39.88 2.57
3567 10809 7.829211 CAGGGACTTATAAGTTTCAGGAATCAA 59.171 37.037 18.96 0.00 39.88 2.57
3568 10810 8.390921 AGGGACTTATAAGTTTCAGGAATCAAA 58.609 33.333 18.96 0.00 39.88 2.69
3569 10811 8.459635 GGGACTTATAAGTTTCAGGAATCAAAC 58.540 37.037 18.96 1.70 39.88 2.93
3570 10812 9.010029 GGACTTATAAGTTTCAGGAATCAAACA 57.990 33.333 18.96 0.00 39.88 2.83
3572 10814 9.014297 ACTTATAAGTTTCAGGAATCAAACAGG 57.986 33.333 12.50 0.00 35.21 4.00
3573 10815 8.934023 TTATAAGTTTCAGGAATCAAACAGGT 57.066 30.769 0.00 0.00 35.33 4.00
3575 10817 6.884280 AAGTTTCAGGAATCAAACAGGTAG 57.116 37.500 0.00 0.00 35.33 3.18
3576 10818 5.316987 AGTTTCAGGAATCAAACAGGTAGG 58.683 41.667 0.00 0.00 35.33 3.18
3577 10819 4.301072 TTCAGGAATCAAACAGGTAGGG 57.699 45.455 0.00 0.00 0.00 3.53
3578 10820 3.526899 TCAGGAATCAAACAGGTAGGGA 58.473 45.455 0.00 0.00 0.00 4.20
3579 10821 3.263425 TCAGGAATCAAACAGGTAGGGAC 59.737 47.826 0.00 0.00 0.00 4.46
3580 10822 3.264450 CAGGAATCAAACAGGTAGGGACT 59.736 47.826 0.00 0.00 46.37 3.85
3581 10823 3.916989 AGGAATCAAACAGGTAGGGACTT 59.083 43.478 0.00 0.00 41.75 3.01
3582 10824 4.354087 AGGAATCAAACAGGTAGGGACTTT 59.646 41.667 0.00 0.00 41.75 2.66
3583 10825 5.077564 GGAATCAAACAGGTAGGGACTTTT 58.922 41.667 0.00 0.00 41.75 2.27
3584 10826 5.538813 GGAATCAAACAGGTAGGGACTTTTT 59.461 40.000 0.00 0.00 41.75 1.94
3585 10827 6.717997 GGAATCAAACAGGTAGGGACTTTTTA 59.282 38.462 0.00 0.00 41.75 1.52
3586 10828 7.094334 GGAATCAAACAGGTAGGGACTTTTTAG 60.094 40.741 0.00 0.00 41.75 1.85
3587 10829 5.627135 TCAAACAGGTAGGGACTTTTTAGG 58.373 41.667 0.00 0.00 41.75 2.69
3588 10830 4.652679 AACAGGTAGGGACTTTTTAGGG 57.347 45.455 0.00 0.00 41.75 3.53
3589 10831 3.878086 ACAGGTAGGGACTTTTTAGGGA 58.122 45.455 0.00 0.00 41.75 4.20
3590 10832 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
3591 10833 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
3592 10834 4.288887 CAGGTAGGGACTTTTTAGGGACTT 59.711 45.833 0.00 0.00 39.49 3.01
3593 10835 4.288887 AGGTAGGGACTTTTTAGGGACTTG 59.711 45.833 0.00 0.00 39.49 3.16
3594 10836 4.287845 GGTAGGGACTTTTTAGGGACTTGA 59.712 45.833 0.00 0.00 39.49 3.02
3595 10837 4.642466 AGGGACTTTTTAGGGACTTGAG 57.358 45.455 0.00 0.00 34.75 3.02
3596 10838 4.240323 AGGGACTTTTTAGGGACTTGAGA 58.760 43.478 0.00 0.00 34.75 3.27
3597 10839 4.041815 AGGGACTTTTTAGGGACTTGAGAC 59.958 45.833 0.00 0.00 34.75 3.36
3598 10840 4.041815 GGGACTTTTTAGGGACTTGAGACT 59.958 45.833 0.00 0.00 41.75 3.24
3599 10841 5.456330 GGGACTTTTTAGGGACTTGAGACTT 60.456 44.000 0.00 0.00 41.75 3.01
3600 10842 6.239800 GGGACTTTTTAGGGACTTGAGACTTA 60.240 42.308 0.00 0.00 41.75 2.24
3601 10843 7.395617 GGACTTTTTAGGGACTTGAGACTTAT 58.604 38.462 0.00 0.00 41.75 1.73
3602 10844 8.537858 GGACTTTTTAGGGACTTGAGACTTATA 58.462 37.037 0.00 0.00 41.75 0.98
3603 10845 9.939802 GACTTTTTAGGGACTTGAGACTTATAA 57.060 33.333 0.00 0.00 41.75 0.98
3604 10846 9.945904 ACTTTTTAGGGACTTGAGACTTATAAG 57.054 33.333 11.05 11.05 41.75 1.73
3605 10847 9.945904 CTTTTTAGGGACTTGAGACTTATAAGT 57.054 33.333 18.05 18.05 40.66 2.24
3607 10849 9.720769 TTTTAGGGACTTGAGACTTATAAGTTG 57.279 33.333 18.96 9.81 38.78 3.16
3608 10850 6.301169 AGGGACTTGAGACTTATAAGTTGG 57.699 41.667 18.96 10.07 34.84 3.77
3609 10851 5.189934 AGGGACTTGAGACTTATAAGTTGGG 59.810 44.000 18.96 10.37 34.84 4.12
3610 10852 5.189145 GGGACTTGAGACTTATAAGTTGGGA 59.811 44.000 18.96 6.15 39.88 4.37
3611 10853 6.107343 GGACTTGAGACTTATAAGTTGGGAC 58.893 44.000 18.96 6.39 39.88 4.46
3612 10854 6.070710 GGACTTGAGACTTATAAGTTGGGACT 60.071 42.308 18.96 10.98 39.88 3.85
3613 10855 7.123847 GGACTTGAGACTTATAAGTTGGGACTA 59.876 40.741 18.96 6.16 39.88 2.59
3614 10856 8.431910 ACTTGAGACTTATAAGTTGGGACTAA 57.568 34.615 18.96 2.28 39.88 2.24
3615 10857 8.877195 ACTTGAGACTTATAAGTTGGGACTAAA 58.123 33.333 18.96 9.53 39.88 1.85
3616 10858 9.720769 CTTGAGACTTATAAGTTGGGACTAAAA 57.279 33.333 18.96 8.46 39.88 1.52
3643 10885 5.801380 GTCCTAGGACTTATGAACCAAACA 58.199 41.667 31.12 0.00 41.57 2.83
3644 10886 5.875359 GTCCTAGGACTTATGAACCAAACAG 59.125 44.000 31.12 0.00 41.57 3.16
3645 10887 5.045869 TCCTAGGACTTATGAACCAAACAGG 60.046 44.000 7.62 0.00 45.67 4.00
3646 10888 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
3647 10889 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
3648 10890 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
3649 10891 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
3650 10892 3.332485 ACTTATGAACCAAACAGGGCCTA 59.668 43.478 5.28 0.00 43.89 3.93
3651 10893 2.990740 ATGAACCAAACAGGGCCTAA 57.009 45.000 5.28 0.00 43.89 2.69
3652 10894 1.989706 TGAACCAAACAGGGCCTAAC 58.010 50.000 5.28 0.00 43.89 2.34
3653 10895 1.497286 TGAACCAAACAGGGCCTAACT 59.503 47.619 5.28 0.00 43.89 2.24
3654 10896 1.886542 GAACCAAACAGGGCCTAACTG 59.113 52.381 5.28 4.00 43.89 3.16
3655 10897 1.145571 ACCAAACAGGGCCTAACTGA 58.854 50.000 5.28 0.00 43.89 3.41
3656 10898 1.202891 ACCAAACAGGGCCTAACTGAC 60.203 52.381 5.28 0.00 43.89 3.51
3657 10899 1.534729 CAAACAGGGCCTAACTGACC 58.465 55.000 5.28 0.00 39.24 4.02
3658 10900 0.036306 AAACAGGGCCTAACTGACCG 59.964 55.000 5.28 0.00 39.24 4.79
3659 10901 1.125711 AACAGGGCCTAACTGACCGT 61.126 55.000 5.28 0.00 39.24 4.83
3660 10902 1.079127 CAGGGCCTAACTGACCGTG 60.079 63.158 5.28 0.00 38.20 4.94
3661 10903 1.535687 AGGGCCTAACTGACCGTGT 60.536 57.895 2.82 0.00 0.00 4.49
3662 10904 1.375523 GGGCCTAACTGACCGTGTG 60.376 63.158 0.84 0.00 0.00 3.82
3663 10905 1.375523 GGCCTAACTGACCGTGTGG 60.376 63.158 0.00 0.00 42.84 4.17
3664 10906 1.669440 GCCTAACTGACCGTGTGGA 59.331 57.895 0.00 0.00 39.21 4.02
3974 11226 4.941604 TCGTCTCGATCAAACAAAATTCG 58.058 39.130 0.00 0.00 0.00 3.34
3975 11227 4.682401 TCGTCTCGATCAAACAAAATTCGA 59.318 37.500 0.00 0.00 37.30 3.71
4008 11274 5.674068 GCATGCAGATCTGTGAAAGAAAGAG 60.674 44.000 23.38 3.15 38.79 2.85
4024 11303 8.443953 AAAGAAAGAGAATTAATATGAGCGCT 57.556 30.769 11.27 11.27 0.00 5.92
4028 11307 3.743521 AGAATTAATATGAGCGCTGGCA 58.256 40.909 18.48 8.29 43.41 4.92
4270 11563 2.404559 TGGACAACACCAGGAACTAGT 58.595 47.619 0.00 0.00 36.02 2.57
4271 11564 2.367567 TGGACAACACCAGGAACTAGTC 59.632 50.000 0.00 0.00 36.02 2.59
4272 11565 2.633481 GGACAACACCAGGAACTAGTCT 59.367 50.000 0.00 0.00 36.02 3.24
4273 11566 3.071167 GGACAACACCAGGAACTAGTCTT 59.929 47.826 0.00 0.00 36.02 3.01
4275 11568 3.071167 ACAACACCAGGAACTAGTCTTCC 59.929 47.826 5.57 5.57 40.26 3.46
4277 11570 3.166679 ACACCAGGAACTAGTCTTCCTC 58.833 50.000 12.44 0.00 46.14 3.71
4278 11571 3.181416 ACACCAGGAACTAGTCTTCCTCT 60.181 47.826 12.44 0.00 46.14 3.69
4282 11605 3.513515 CAGGAACTAGTCTTCCTCTGCTT 59.486 47.826 12.44 0.00 46.14 3.91
4285 11608 2.534990 ACTAGTCTTCCTCTGCTTGCT 58.465 47.619 0.00 0.00 0.00 3.91
4287 11610 3.445805 ACTAGTCTTCCTCTGCTTGCTAC 59.554 47.826 0.00 0.00 0.00 3.58
4316 11641 2.124612 CATGGATCTGTGCCGCCA 60.125 61.111 0.00 0.00 34.45 5.69
4384 11711 3.117436 GTCTCTCCCTATGTACCTGGACT 60.117 52.174 0.00 0.00 0.00 3.85
4400 11727 2.046892 CTGGAGCGGGTGGTCAAG 60.047 66.667 0.00 0.00 44.47 3.02
4430 11760 0.323957 AGGTCCGTCCTTGGTTTAGC 59.676 55.000 0.00 0.00 45.67 3.09
4602 12849 2.558359 AGTAGCTTGTGAATTTGGGTGC 59.442 45.455 0.00 0.00 0.00 5.01
4606 12853 2.295909 GCTTGTGAATTTGGGTGCTACA 59.704 45.455 0.00 0.00 0.00 2.74
4607 12854 3.857010 GCTTGTGAATTTGGGTGCTACAC 60.857 47.826 0.00 0.00 0.00 2.90
4608 12855 3.222173 TGTGAATTTGGGTGCTACACT 57.778 42.857 0.00 0.00 34.40 3.55
4609 12856 3.146066 TGTGAATTTGGGTGCTACACTC 58.854 45.455 0.00 0.00 35.05 3.51
4610 12857 2.488153 GTGAATTTGGGTGCTACACTCC 59.512 50.000 0.00 0.00 33.21 3.85
4611 12858 2.375174 TGAATTTGGGTGCTACACTCCT 59.625 45.455 0.00 0.00 33.21 3.69
4612 12859 3.585289 TGAATTTGGGTGCTACACTCCTA 59.415 43.478 0.00 0.00 33.21 2.94
4613 12860 3.914426 ATTTGGGTGCTACACTCCTAG 57.086 47.619 0.00 0.00 33.21 3.02
4617 12864 3.296854 TGGGTGCTACACTCCTAGTATG 58.703 50.000 0.00 0.00 33.21 2.39
4618 12865 2.628657 GGGTGCTACACTCCTAGTATGG 59.371 54.545 0.00 0.00 34.40 2.74
4619 12866 2.628657 GGTGCTACACTCCTAGTATGGG 59.371 54.545 0.00 0.00 38.63 4.00
4620 12867 2.628657 GTGCTACACTCCTAGTATGGGG 59.371 54.545 0.00 0.00 37.33 4.96
4621 12868 2.246588 TGCTACACTCCTAGTATGGGGT 59.753 50.000 0.00 0.00 42.53 4.95
4622 12869 3.464456 TGCTACACTCCTAGTATGGGGTA 59.536 47.826 0.00 0.00 39.11 3.69
4623 12870 4.079038 TGCTACACTCCTAGTATGGGGTAA 60.079 45.833 0.00 0.00 39.11 2.85
4624 12871 4.280425 GCTACACTCCTAGTATGGGGTAAC 59.720 50.000 0.00 0.00 39.11 2.50
4625 12872 4.621797 ACACTCCTAGTATGGGGTAACT 57.378 45.455 0.00 0.00 39.11 2.24
4626 12873 4.956582 ACACTCCTAGTATGGGGTAACTT 58.043 43.478 0.00 0.00 39.11 2.66
4627 12874 4.715297 ACACTCCTAGTATGGGGTAACTTG 59.285 45.833 0.00 0.00 39.11 3.16
4639 12886 3.005050 GGGGTAACTTGTGTTTTACTGCC 59.995 47.826 0.00 0.00 37.59 4.85
4655 12902 6.543430 TTACTGCCAATATTTTGCTGGATT 57.457 33.333 14.33 1.87 31.38 3.01
4673 12920 5.309638 TGGATTGTTCATCGAGTTTAACCA 58.690 37.500 0.00 0.00 31.73 3.67
4674 12921 5.411361 TGGATTGTTCATCGAGTTTAACCAG 59.589 40.000 0.00 0.00 31.73 4.00
4675 12922 5.163754 GGATTGTTCATCGAGTTTAACCAGG 60.164 44.000 0.00 0.00 31.73 4.45
4677 12924 3.244422 TGTTCATCGAGTTTAACCAGGCT 60.244 43.478 0.00 0.00 0.00 4.58
4678 12925 3.247006 TCATCGAGTTTAACCAGGCTC 57.753 47.619 0.00 0.00 0.00 4.70
4679 12926 2.565391 TCATCGAGTTTAACCAGGCTCA 59.435 45.455 0.00 0.00 0.00 4.26
4680 12927 2.450609 TCGAGTTTAACCAGGCTCAC 57.549 50.000 0.00 0.00 0.00 3.51
4702 12993 7.001674 TCACTGGTAAAACCACTGAACATAAT 58.998 34.615 6.10 0.00 44.79 1.28
4710 13001 8.650143 AAAACCACTGAACATAATTACTCCAT 57.350 30.769 0.00 0.00 0.00 3.41
4766 13059 0.400525 CAGGGGAGGGCAGAGGATAA 60.401 60.000 0.00 0.00 0.00 1.75
4811 13104 4.022416 TGCGCACTTCACCAGAAATAAAAT 60.022 37.500 5.66 0.00 32.35 1.82
4843 13140 6.070951 TGAAATTCTCACCTGATCATTCCT 57.929 37.500 0.00 0.00 0.00 3.36
4862 13159 0.110486 TTGCCTTCCCAGTTCCAGTC 59.890 55.000 0.00 0.00 0.00 3.51
5009 13319 8.559536 TGTACTTCAGAACTGTGATTTTGATTC 58.440 33.333 1.73 0.00 0.00 2.52
5047 13357 4.219507 TGTTGTTTTCTTGTTCAAGCAGGA 59.780 37.500 7.58 0.00 0.00 3.86
5064 13374 1.318158 GGAGAAATGCACAGCTGGGG 61.318 60.000 19.71 10.82 0.00 4.96
5065 13375 0.610232 GAGAAATGCACAGCTGGGGT 60.610 55.000 19.71 0.00 0.00 4.95
5072 13391 0.611896 GCACAGCTGGGGTATTGGTT 60.612 55.000 19.71 0.00 0.00 3.67
5076 13395 0.912487 AGCTGGGGTATTGGTTCCGA 60.912 55.000 0.00 0.00 0.00 4.55
5078 13397 1.409661 GCTGGGGTATTGGTTCCGAAT 60.410 52.381 0.00 0.00 0.00 3.34
5126 13446 6.536224 CAGGCAATGTAAAGGAAAATGGATTC 59.464 38.462 0.00 0.00 0.00 2.52
5164 13487 8.908786 TTCAGATTCATACATATCACCCTTTC 57.091 34.615 0.00 0.00 0.00 2.62
5167 13490 4.002906 TCATACATATCACCCTTTCGGC 57.997 45.455 0.00 0.00 33.26 5.54
5169 13492 0.539986 ACATATCACCCTTTCGGCGT 59.460 50.000 6.85 0.00 33.26 5.68
5185 13508 2.484417 CGGCGTTAGACTCCTAGTAGGA 60.484 54.545 18.15 18.15 43.43 2.94
5205 13528 4.820173 AGGAGGTTACTTGTGTTTTACTGC 59.180 41.667 0.00 0.00 0.00 4.40
5216 13539 6.683090 TGTGTTTTACTGCGAATATTTTGC 57.317 33.333 6.66 6.66 40.58 3.68
5218 13541 7.585867 TGTGTTTTACTGCGAATATTTTGCTA 58.414 30.769 12.91 0.00 40.80 3.49
5254 13616 5.886992 AGTTTAACCAAAGAAGTTTCACCG 58.113 37.500 0.00 0.00 0.00 4.94
5256 13618 6.598850 AGTTTAACCAAAGAAGTTTCACCGTA 59.401 34.615 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.067180 ACGTCGTCTCTGGACACTTTTAA 59.933 43.478 0.00 0.00 42.21 1.52
25 26 3.758554 ACACCTGCAAATGTCTGGATTAC 59.241 43.478 0.00 0.00 0.00 1.89
160 168 6.549433 TTACTTCTAAACGGGGACATATGT 57.451 37.500 8.43 8.43 0.00 2.29
162 170 8.707449 TGTTATTACTTCTAAACGGGGACATAT 58.293 33.333 0.00 0.00 0.00 1.78
163 171 8.076910 TGTTATTACTTCTAAACGGGGACATA 57.923 34.615 0.00 0.00 0.00 2.29
166 174 6.875726 ACTTGTTATTACTTCTAAACGGGGAC 59.124 38.462 0.00 0.00 0.00 4.46
202 210 5.469373 TTGTCTGATGACGATTTATGTGC 57.531 39.130 0.00 0.00 45.70 4.57
241 249 3.254903 TCTGTTTGGAGAAACTCGATCGA 59.745 43.478 18.32 18.32 41.87 3.59
251 259 4.253685 GACATCGGATTCTGTTTGGAGAA 58.746 43.478 0.00 0.00 36.41 2.87
275 287 5.688814 AGAGGATGTTCATGTGATGAGAA 57.311 39.130 0.00 0.00 40.94 2.87
294 306 2.224378 ACCCATGCACGGATCATAAGAG 60.224 50.000 0.00 0.00 0.00 2.85
346 358 5.981915 CGTTTCTCTAGCTCATGATTCATGA 59.018 40.000 24.16 24.16 46.84 3.07
348 360 6.040278 TCTCGTTTCTCTAGCTCATGATTCAT 59.960 38.462 0.00 0.00 0.00 2.57
349 361 5.358160 TCTCGTTTCTCTAGCTCATGATTCA 59.642 40.000 0.00 0.00 0.00 2.57
352 364 5.843673 TTCTCGTTTCTCTAGCTCATGAT 57.156 39.130 0.00 0.00 0.00 2.45
362 383 9.343103 GTTTTTCTTTTCTTTTCTCGTTTCTCT 57.657 29.630 0.00 0.00 0.00 3.10
392 413 4.641645 TGCCAACCTCAGTGCCCG 62.642 66.667 0.00 0.00 0.00 6.13
393 414 2.985847 GTGCCAACCTCAGTGCCC 60.986 66.667 0.00 0.00 0.00 5.36
1047 1111 4.467107 GAGGCCCCGAGGAGGAGT 62.467 72.222 0.00 0.00 45.00 3.85
1233 1300 1.404391 GACGTACTGATGATGTCGGGT 59.596 52.381 0.00 0.00 37.54 5.28
1261 1328 0.881118 GAGCTAGATCAGAGGAGGCG 59.119 60.000 2.36 0.00 0.00 5.52
1309 1441 4.313282 TCTCTCGACAGACTAACGAAAGA 58.687 43.478 0.00 3.46 35.70 2.52
1311 1443 5.219226 GATCTCTCGACAGACTAACGAAA 57.781 43.478 0.00 0.00 35.70 3.46
1353 1485 1.796151 CGCCTGATCAAACATGCGT 59.204 52.632 12.33 0.00 44.88 5.24
1354 1486 4.676444 CGCCTGATCAAACATGCG 57.324 55.556 0.00 3.01 44.69 4.73
1355 1487 1.089920 ACTCGCCTGATCAAACATGC 58.910 50.000 0.00 0.00 0.00 4.06
1484 1616 1.580132 GCTTACGAATTGCACGCCG 60.580 57.895 0.00 0.00 0.00 6.46
1545 1735 1.004161 TCATCTCCCCGTTGCATTTCA 59.996 47.619 0.00 0.00 0.00 2.69
1546 1736 1.401905 GTCATCTCCCCGTTGCATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1547 1737 1.271871 TGTCATCTCCCCGTTGCATTT 60.272 47.619 0.00 0.00 0.00 2.32
1556 1750 1.386533 CACAGCATTGTCATCTCCCC 58.613 55.000 0.00 0.00 34.62 4.81
1557 1751 0.737219 GCACAGCATTGTCATCTCCC 59.263 55.000 0.00 0.00 34.62 4.30
1582 1781 1.741706 CTGATGATGTTCACCTGCACC 59.258 52.381 0.00 0.00 0.00 5.01
1609 1808 0.888285 GGAAGTTCTGCAGCTGCTGT 60.888 55.000 36.61 21.27 42.66 4.40
2017 2236 6.541111 ACGTCCTGACAAATTTTCTACTTC 57.459 37.500 0.00 0.00 0.00 3.01
2069 2288 3.695830 TTAGGCCAACCACTCTTGTAG 57.304 47.619 5.01 0.00 39.06 2.74
2082 2301 6.498651 TGTCTAATTTTGGGAATTTTAGGCCA 59.501 34.615 5.01 0.00 0.00 5.36
2244 2713 5.061721 ACTACCCAAAAATGACTCCACTT 57.938 39.130 0.00 0.00 0.00 3.16
2351 2901 2.386661 ATCGTTTCTCGCTTCATGGT 57.613 45.000 0.00 0.00 39.67 3.55
2447 2998 6.183360 GCTTAAGTGCGAGCTAGTAAATTTGA 60.183 38.462 4.02 0.00 36.01 2.69
2448 2999 5.960105 GCTTAAGTGCGAGCTAGTAAATTTG 59.040 40.000 4.02 0.00 36.01 2.32
2456 3007 0.175760 TGGGCTTAAGTGCGAGCTAG 59.824 55.000 4.02 0.00 38.89 3.42
2477 5604 4.319177 GAGTGATCTTACCAACAGCACTT 58.681 43.478 0.00 0.00 35.49 3.16
2481 5608 1.661112 GCGAGTGATCTTACCAACAGC 59.339 52.381 0.00 0.00 0.00 4.40
2520 5649 4.985409 ACTGACTGAAAACTCATCTCGAAC 59.015 41.667 0.00 0.00 0.00 3.95
2523 5652 5.570973 CACTACTGACTGAAAACTCATCTCG 59.429 44.000 0.00 0.00 0.00 4.04
2535 5664 5.712084 ATAGGAGTACCACTACTGACTGA 57.288 43.478 1.13 0.00 40.30 3.41
2536 5665 6.377429 TGAAATAGGAGTACCACTACTGACTG 59.623 42.308 1.13 0.00 40.30 3.51
2537 5666 6.491383 TGAAATAGGAGTACCACTACTGACT 58.509 40.000 1.13 0.00 40.30 3.41
2538 5667 6.770746 TGAAATAGGAGTACCACTACTGAC 57.229 41.667 1.13 0.00 40.30 3.51
2539 5668 9.656323 ATTATGAAATAGGAGTACCACTACTGA 57.344 33.333 1.13 0.00 40.30 3.41
2540 5669 9.915629 GATTATGAAATAGGAGTACCACTACTG 57.084 37.037 1.13 0.00 40.30 2.74
2542 5671 8.867097 TGGATTATGAAATAGGAGTACCACTAC 58.133 37.037 0.00 0.00 38.94 2.73
2543 5672 9.090103 CTGGATTATGAAATAGGAGTACCACTA 57.910 37.037 0.00 0.00 38.94 2.74
2566 5695 1.969208 TGATGCCTGATCTCTAGCTGG 59.031 52.381 0.00 0.00 33.54 4.85
2578 5709 4.639310 AGCTCTTTAAGTTGATGATGCCTG 59.361 41.667 0.00 0.00 0.00 4.85
2596 5727 4.292186 TCCTATTGCTGTTTTGAGCTCT 57.708 40.909 16.19 0.00 39.90 4.09
2597 5728 5.376854 TTTCCTATTGCTGTTTTGAGCTC 57.623 39.130 6.82 6.82 39.90 4.09
2600 5731 7.373493 AGAACATTTCCTATTGCTGTTTTGAG 58.627 34.615 0.00 0.00 30.63 3.02
2601 5732 7.288810 AGAACATTTCCTATTGCTGTTTTGA 57.711 32.000 0.00 0.00 30.63 2.69
2603 5734 7.309805 GGGTAGAACATTTCCTATTGCTGTTTT 60.310 37.037 0.00 0.00 30.63 2.43
2637 5793 4.870123 TTGCGGTACTACTACTTTGGAA 57.130 40.909 0.00 0.00 0.00 3.53
2645 5801 9.611284 CGTAATGTAAATATTGCGGTACTACTA 57.389 33.333 2.80 0.00 40.76 1.82
2646 5802 8.137437 ACGTAATGTAAATATTGCGGTACTACT 58.863 33.333 12.76 0.00 46.02 2.57
2647 5803 8.209869 CACGTAATGTAAATATTGCGGTACTAC 58.790 37.037 12.76 0.00 46.02 2.73
2648 5804 7.381948 CCACGTAATGTAAATATTGCGGTACTA 59.618 37.037 12.76 0.00 46.02 1.82
2649 5805 6.201425 CCACGTAATGTAAATATTGCGGTACT 59.799 38.462 12.76 0.00 46.02 2.73
2671 5827 1.474879 GAGTACTCTCTGTGGCTCCAC 59.525 57.143 15.91 11.95 46.33 4.02
2678 5834 6.516739 TTCAATGTAGGAGTACTCTCTGTG 57.483 41.667 21.88 12.54 40.29 3.66
2713 5872 0.907704 TGGTACTGCCCTGAATCGGT 60.908 55.000 0.00 0.00 36.04 4.69
2717 5876 1.705186 AGTTGTGGTACTGCCCTGAAT 59.295 47.619 0.00 0.00 36.04 2.57
2721 5880 1.435256 AAGAGTTGTGGTACTGCCCT 58.565 50.000 0.00 0.00 36.04 5.19
2722 5881 1.880027 CAAAGAGTTGTGGTACTGCCC 59.120 52.381 0.00 0.00 36.04 5.36
2723 5882 1.266989 GCAAAGAGTTGTGGTACTGCC 59.733 52.381 0.00 0.00 37.06 4.85
2724 5883 1.946768 TGCAAAGAGTTGTGGTACTGC 59.053 47.619 0.00 0.00 37.06 4.40
2725 5884 3.120546 CGATGCAAAGAGTTGTGGTACTG 60.121 47.826 0.00 0.00 37.06 2.74
2746 5905 2.322355 AGGATTTCAGATCTGCACCG 57.678 50.000 18.36 0.00 0.00 4.94
2753 5912 7.281040 TCATAAATGCCAAGGATTTCAGATC 57.719 36.000 0.00 0.00 0.00 2.75
2754 5913 7.850935 ATCATAAATGCCAAGGATTTCAGAT 57.149 32.000 0.00 1.35 0.00 2.90
2755 5914 7.342541 TGAATCATAAATGCCAAGGATTTCAGA 59.657 33.333 0.00 0.00 0.00 3.27
2756 5915 7.494211 TGAATCATAAATGCCAAGGATTTCAG 58.506 34.615 0.00 0.00 0.00 3.02
2757 5916 7.421087 TGAATCATAAATGCCAAGGATTTCA 57.579 32.000 0.00 0.00 0.00 2.69
2758 5917 8.145767 TGATGAATCATAAATGCCAAGGATTTC 58.854 33.333 0.00 0.00 0.00 2.17
2759 5918 8.025270 TGATGAATCATAAATGCCAAGGATTT 57.975 30.769 0.00 0.00 0.00 2.17
2760 5919 7.606135 TGATGAATCATAAATGCCAAGGATT 57.394 32.000 0.00 0.00 0.00 3.01
2761 5920 7.792364 ATGATGAATCATAAATGCCAAGGAT 57.208 32.000 3.94 0.00 45.17 3.24
2783 5942 2.298610 TCGTCACTGGAGCCTAGTATG 58.701 52.381 0.00 0.00 0.00 2.39
2784 5943 2.730934 TCGTCACTGGAGCCTAGTAT 57.269 50.000 0.00 0.00 0.00 2.12
2785 5944 2.730934 ATCGTCACTGGAGCCTAGTA 57.269 50.000 0.00 0.00 0.00 1.82
2786 5945 2.577700 CTATCGTCACTGGAGCCTAGT 58.422 52.381 0.00 0.00 0.00 2.57
2787 5946 1.883275 CCTATCGTCACTGGAGCCTAG 59.117 57.143 0.00 0.00 0.00 3.02
2871 6036 4.095400 TCCAGCCCTCCCTCCCTC 62.095 72.222 0.00 0.00 0.00 4.30
2894 6059 0.037326 TGGATGCCGAGACAGACAAC 60.037 55.000 0.00 0.00 0.00 3.32
2895 6060 0.904649 ATGGATGCCGAGACAGACAA 59.095 50.000 0.00 0.00 0.00 3.18
2912 6077 1.957668 TTGCATCCAGACGATCCATG 58.042 50.000 0.00 0.00 0.00 3.66
3194 9226 0.874175 CACACGAAGACGAAGGTGCA 60.874 55.000 0.00 0.00 42.66 4.57
3195 9227 0.874607 ACACACGAAGACGAAGGTGC 60.875 55.000 0.00 0.00 42.66 5.01
3218 9261 2.974794 TGCATGCATGGATAGTAGGAGT 59.025 45.455 27.34 0.00 0.00 3.85
3249 9292 1.676635 ACGCCCTACACGTAGCTGA 60.677 57.895 0.00 0.00 43.02 4.26
3339 9399 5.981915 ACTTTCGGTGTAAGACAACTTAGAC 59.018 40.000 0.00 0.00 45.81 2.59
3340 9400 6.152932 ACTTTCGGTGTAAGACAACTTAGA 57.847 37.500 0.00 0.00 38.97 2.10
3341 9401 7.864379 TCTTACTTTCGGTGTAAGACAACTTAG 59.136 37.037 16.12 0.00 46.04 2.18
3342 9402 7.715657 TCTTACTTTCGGTGTAAGACAACTTA 58.284 34.615 16.12 0.00 46.04 2.24
3343 9403 6.576185 TCTTACTTTCGGTGTAAGACAACTT 58.424 36.000 16.12 0.00 46.04 2.66
3344 9404 6.152932 TCTTACTTTCGGTGTAAGACAACT 57.847 37.500 16.12 0.00 46.04 3.16
3345 9405 5.981915 ACTCTTACTTTCGGTGTAAGACAAC 59.018 40.000 16.12 0.00 46.04 3.32
3372 10614 8.630037 AACTAATAAGTCCTTGGAAACAAACAG 58.370 33.333 0.00 0.00 42.41 3.16
3373 10615 8.528044 AACTAATAAGTCCTTGGAAACAAACA 57.472 30.769 0.00 0.00 42.41 2.83
3376 10618 9.292195 CCTAAACTAATAAGTCCTTGGAAACAA 57.708 33.333 0.00 0.00 41.30 2.83
3377 10619 7.886446 CCCTAAACTAATAAGTCCTTGGAAACA 59.114 37.037 0.00 0.00 33.75 2.83
3378 10620 8.105197 TCCCTAAACTAATAAGTCCTTGGAAAC 58.895 37.037 0.00 0.00 33.75 2.78
3379 10621 8.105197 GTCCCTAAACTAATAAGTCCTTGGAAA 58.895 37.037 0.00 0.00 33.75 3.13
3380 10622 7.460082 AGTCCCTAAACTAATAAGTCCTTGGAA 59.540 37.037 0.00 0.00 33.75 3.53
3381 10623 6.964086 AGTCCCTAAACTAATAAGTCCTTGGA 59.036 38.462 0.00 0.00 33.75 3.53
3382 10624 7.196637 AGTCCCTAAACTAATAAGTCCTTGG 57.803 40.000 0.00 0.00 33.75 3.61
3409 10651 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
3410 10652 8.272889 GTTTAGATGGGACTTATAGGGACTTTT 58.727 37.037 0.00 0.00 41.75 2.27
3411 10653 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
3412 10654 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
3413 10655 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
3414 10656 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
3415 10657 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
3416 10658 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
3417 10659 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
3418 10660 7.499232 CCTGTTTGGTTTAGATGGGACTTATAG 59.501 40.741 0.00 0.00 0.00 1.31
3419 10661 7.183112 TCCTGTTTGGTTTAGATGGGACTTATA 59.817 37.037 0.00 0.00 37.07 0.98
3420 10662 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
3421 10663 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
3422 10664 4.105697 TCCTGTTTGGTTTAGATGGGACTT 59.894 41.667 0.00 0.00 37.07 3.01
3423 10665 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
3424 10666 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
3425 10667 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
3426 10668 3.356290 CCTCCTGTTTGGTTTAGATGGG 58.644 50.000 0.00 0.00 37.07 4.00
3427 10669 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
3428 10670 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
3429 10671 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
3430 10672 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
3431 10673 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
3432 10674 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
3433 10675 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
3434 10676 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
3435 10677 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
3436 10678 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
3437 10679 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
3438 10680 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
3439 10681 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
3440 10682 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
3441 10683 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
3442 10684 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
3443 10685 6.819947 TTTTAAGTCCCTATAAGTCCCTCC 57.180 41.667 0.00 0.00 0.00 4.30
3444 10686 7.225011 CCATTTTAAGTCCCTATAAGTCCCTC 58.775 42.308 0.00 0.00 0.00 4.30
3445 10687 6.102762 CCCATTTTAAGTCCCTATAAGTCCCT 59.897 42.308 0.00 0.00 0.00 4.20
3446 10688 6.304624 CCCATTTTAAGTCCCTATAAGTCCC 58.695 44.000 0.00 0.00 0.00 4.46
3447 10689 5.768662 GCCCATTTTAAGTCCCTATAAGTCC 59.231 44.000 0.00 0.00 0.00 3.85
3448 10690 6.362248 TGCCCATTTTAAGTCCCTATAAGTC 58.638 40.000 0.00 0.00 0.00 3.01
3449 10691 6.335781 TGCCCATTTTAAGTCCCTATAAGT 57.664 37.500 0.00 0.00 0.00 2.24
3450 10692 7.839680 AATGCCCATTTTAAGTCCCTATAAG 57.160 36.000 0.00 0.00 0.00 1.73
3451 10693 7.070571 CCAAATGCCCATTTTAAGTCCCTATAA 59.929 37.037 3.61 0.00 38.84 0.98
3452 10694 6.553100 CCAAATGCCCATTTTAAGTCCCTATA 59.447 38.462 3.61 0.00 38.84 1.31
3453 10695 5.366477 CCAAATGCCCATTTTAAGTCCCTAT 59.634 40.000 3.61 0.00 38.84 2.57
3454 10696 4.714308 CCAAATGCCCATTTTAAGTCCCTA 59.286 41.667 3.61 0.00 38.84 3.53
3455 10697 3.519107 CCAAATGCCCATTTTAAGTCCCT 59.481 43.478 3.61 0.00 38.84 4.20
3456 10698 3.370421 CCCAAATGCCCATTTTAAGTCCC 60.370 47.826 3.61 0.00 38.84 4.46
3457 10699 3.517500 TCCCAAATGCCCATTTTAAGTCC 59.482 43.478 3.61 0.00 38.84 3.85
3458 10700 4.222810 AGTCCCAAATGCCCATTTTAAGTC 59.777 41.667 3.61 0.00 38.84 3.01
3459 10701 4.167319 AGTCCCAAATGCCCATTTTAAGT 58.833 39.130 3.61 0.00 38.84 2.24
3460 10702 4.824479 AGTCCCAAATGCCCATTTTAAG 57.176 40.909 3.61 0.00 38.84 1.85
3461 10703 6.441924 TCATAAGTCCCAAATGCCCATTTTAA 59.558 34.615 3.61 0.00 38.84 1.52
3462 10704 5.960811 TCATAAGTCCCAAATGCCCATTTTA 59.039 36.000 3.61 0.00 38.84 1.52
3463 10705 4.782156 TCATAAGTCCCAAATGCCCATTTT 59.218 37.500 3.61 0.00 38.84 1.82
3464 10706 4.360889 TCATAAGTCCCAAATGCCCATTT 58.639 39.130 0.57 0.57 41.33 2.32
3465 10707 3.992999 TCATAAGTCCCAAATGCCCATT 58.007 40.909 0.00 0.00 0.00 3.16
3466 10708 3.686227 TCATAAGTCCCAAATGCCCAT 57.314 42.857 0.00 0.00 0.00 4.00
3467 10709 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
3468 10710 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
3469 10711 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
3470 10712 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
3471 10713 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
3472 10714 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
3473 10715 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
3474 10716 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
3475 10717 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
3476 10718 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
3477 10719 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
3478 10720 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
3479 10721 9.261035 TCTCCTTGAGAGTCTTATTTCATAAGT 57.739 33.333 0.00 0.00 43.71 2.24
3495 10737 6.503944 AGTCCCTATAAAACTCTCCTTGAGA 58.496 40.000 0.00 0.00 45.39 3.27
3497 10739 8.855804 ATAAGTCCCTATAAAACTCTCCTTGA 57.144 34.615 0.00 0.00 0.00 3.02
3499 10741 9.954992 ACTATAAGTCCCTATAAAACTCTCCTT 57.045 33.333 0.00 0.00 0.00 3.36
3500 10742 9.954992 AACTATAAGTCCCTATAAAACTCTCCT 57.045 33.333 0.00 0.00 0.00 3.69
3501 10743 9.984190 CAACTATAAGTCCCTATAAAACTCTCC 57.016 37.037 0.00 0.00 0.00 3.71
3513 10755 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
3520 10762 9.886337 TCCCTGTAAGACCATATTACAACTATA 57.114 33.333 0.80 0.00 41.31 1.31
3521 10763 8.648693 GTCCCTGTAAGACCATATTACAACTAT 58.351 37.037 0.80 0.00 41.31 2.12
3522 10764 7.842743 AGTCCCTGTAAGACCATATTACAACTA 59.157 37.037 0.80 0.00 41.31 2.24
3523 10765 6.672657 AGTCCCTGTAAGACCATATTACAACT 59.327 38.462 0.80 0.00 41.31 3.16
3524 10766 6.885922 AGTCCCTGTAAGACCATATTACAAC 58.114 40.000 0.80 0.00 41.31 3.32
3525 10767 7.504926 AAGTCCCTGTAAGACCATATTACAA 57.495 36.000 0.80 0.00 41.31 2.41
3526 10768 8.792830 ATAAGTCCCTGTAAGACCATATTACA 57.207 34.615 0.00 0.00 40.03 2.41
3529 10771 9.448587 ACTTATAAGTCCCTGTAAGACCATATT 57.551 33.333 12.50 0.00 32.86 1.28
3530 10772 9.448587 AACTTATAAGTCCCTGTAAGACCATAT 57.551 33.333 18.28 0.00 38.57 1.78
3531 10773 8.849543 AACTTATAAGTCCCTGTAAGACCATA 57.150 34.615 18.28 0.00 38.57 2.74
3532 10774 7.750947 AACTTATAAGTCCCTGTAAGACCAT 57.249 36.000 18.28 0.00 38.57 3.55
3533 10775 7.236019 TGAAACTTATAAGTCCCTGTAAGACCA 59.764 37.037 18.28 1.74 38.57 4.02
3534 10776 7.618137 TGAAACTTATAAGTCCCTGTAAGACC 58.382 38.462 18.28 0.00 38.57 3.85
3535 10777 7.764901 CCTGAAACTTATAAGTCCCTGTAAGAC 59.235 40.741 18.28 2.75 38.57 3.01
3536 10778 7.676893 TCCTGAAACTTATAAGTCCCTGTAAGA 59.323 37.037 18.28 6.12 38.57 2.10
3537 10779 7.848128 TCCTGAAACTTATAAGTCCCTGTAAG 58.152 38.462 18.28 9.20 38.57 2.34
3538 10780 7.801893 TCCTGAAACTTATAAGTCCCTGTAA 57.198 36.000 18.28 5.78 38.57 2.41
3539 10781 7.801893 TTCCTGAAACTTATAAGTCCCTGTA 57.198 36.000 18.28 1.68 38.57 2.74
3540 10782 6.697641 TTCCTGAAACTTATAAGTCCCTGT 57.302 37.500 18.28 0.00 38.57 4.00
3541 10783 7.338710 TGATTCCTGAAACTTATAAGTCCCTG 58.661 38.462 18.28 14.90 38.57 4.45
3542 10784 7.510675 TGATTCCTGAAACTTATAAGTCCCT 57.489 36.000 18.28 6.56 38.57 4.20
3543 10785 8.459635 GTTTGATTCCTGAAACTTATAAGTCCC 58.540 37.037 18.28 12.99 38.57 4.46
3544 10786 9.010029 TGTTTGATTCCTGAAACTTATAAGTCC 57.990 33.333 18.28 13.31 38.57 3.85
3546 10788 9.014297 CCTGTTTGATTCCTGAAACTTATAAGT 57.986 33.333 12.50 12.50 42.04 2.24
3547 10789 9.014297 ACCTGTTTGATTCCTGAAACTTATAAG 57.986 33.333 11.05 11.05 33.92 1.73
3548 10790 8.934023 ACCTGTTTGATTCCTGAAACTTATAA 57.066 30.769 0.00 0.00 33.92 0.98
3549 10791 9.667107 CTACCTGTTTGATTCCTGAAACTTATA 57.333 33.333 0.00 0.00 33.92 0.98
3550 10792 7.611855 CCTACCTGTTTGATTCCTGAAACTTAT 59.388 37.037 0.00 0.00 33.92 1.73
3551 10793 6.940298 CCTACCTGTTTGATTCCTGAAACTTA 59.060 38.462 0.00 0.00 33.92 2.24
3552 10794 5.770162 CCTACCTGTTTGATTCCTGAAACTT 59.230 40.000 0.00 0.00 33.92 2.66
3553 10795 5.316987 CCTACCTGTTTGATTCCTGAAACT 58.683 41.667 0.00 0.00 33.92 2.66
3554 10796 4.459337 CCCTACCTGTTTGATTCCTGAAAC 59.541 45.833 0.00 0.00 33.48 2.78
3555 10797 4.352595 TCCCTACCTGTTTGATTCCTGAAA 59.647 41.667 0.00 0.00 0.00 2.69
3556 10798 3.913799 TCCCTACCTGTTTGATTCCTGAA 59.086 43.478 0.00 0.00 0.00 3.02
3557 10799 3.263425 GTCCCTACCTGTTTGATTCCTGA 59.737 47.826 0.00 0.00 0.00 3.86
3558 10800 3.264450 AGTCCCTACCTGTTTGATTCCTG 59.736 47.826 0.00 0.00 0.00 3.86
3559 10801 3.532102 AGTCCCTACCTGTTTGATTCCT 58.468 45.455 0.00 0.00 0.00 3.36
3560 10802 4.302559 AAGTCCCTACCTGTTTGATTCC 57.697 45.455 0.00 0.00 0.00 3.01
3561 10803 6.650427 AAAAAGTCCCTACCTGTTTGATTC 57.350 37.500 0.00 0.00 0.00 2.52
3562 10804 6.719829 CCTAAAAAGTCCCTACCTGTTTGATT 59.280 38.462 0.00 0.00 0.00 2.57
3563 10805 6.246163 CCTAAAAAGTCCCTACCTGTTTGAT 58.754 40.000 0.00 0.00 0.00 2.57
3564 10806 5.457052 CCCTAAAAAGTCCCTACCTGTTTGA 60.457 44.000 0.00 0.00 0.00 2.69
3565 10807 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
3566 10808 4.666431 TCCCTAAAAAGTCCCTACCTGTTT 59.334 41.667 0.00 0.00 0.00 2.83
3567 10809 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
3568 10810 3.586174 GTCCCTAAAAAGTCCCTACCTGT 59.414 47.826 0.00 0.00 0.00 4.00
3569 10811 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
3570 10812 4.157668 AGTCCCTAAAAAGTCCCTACCT 57.842 45.455 0.00 0.00 0.00 3.08
3571 10813 4.287845 TCAAGTCCCTAAAAAGTCCCTACC 59.712 45.833 0.00 0.00 0.00 3.18
3572 10814 5.247792 TCTCAAGTCCCTAAAAAGTCCCTAC 59.752 44.000 0.00 0.00 0.00 3.18
3573 10815 5.247792 GTCTCAAGTCCCTAAAAAGTCCCTA 59.752 44.000 0.00 0.00 0.00 3.53
3574 10816 4.041815 GTCTCAAGTCCCTAAAAAGTCCCT 59.958 45.833 0.00 0.00 0.00 4.20
3575 10817 4.041815 AGTCTCAAGTCCCTAAAAAGTCCC 59.958 45.833 0.00 0.00 0.00 4.46
3576 10818 5.230323 AGTCTCAAGTCCCTAAAAAGTCC 57.770 43.478 0.00 0.00 0.00 3.85
3577 10819 9.939802 TTATAAGTCTCAAGTCCCTAAAAAGTC 57.060 33.333 0.00 0.00 0.00 3.01
3578 10820 9.945904 CTTATAAGTCTCAAGTCCCTAAAAAGT 57.054 33.333 4.18 0.00 0.00 2.66
3579 10821 9.945904 ACTTATAAGTCTCAAGTCCCTAAAAAG 57.054 33.333 12.50 0.00 32.86 2.27
3581 10823 9.720769 CAACTTATAAGTCTCAAGTCCCTAAAA 57.279 33.333 18.28 0.00 38.57 1.52
3582 10824 8.319146 CCAACTTATAAGTCTCAAGTCCCTAAA 58.681 37.037 18.28 0.00 38.57 1.85
3583 10825 7.093024 CCCAACTTATAAGTCTCAAGTCCCTAA 60.093 40.741 18.28 0.00 38.57 2.69
3584 10826 6.383147 CCCAACTTATAAGTCTCAAGTCCCTA 59.617 42.308 18.28 0.00 38.57 3.53
3585 10827 5.189934 CCCAACTTATAAGTCTCAAGTCCCT 59.810 44.000 18.28 0.00 38.57 4.20
3586 10828 5.189145 TCCCAACTTATAAGTCTCAAGTCCC 59.811 44.000 18.28 0.00 38.57 4.46
3587 10829 6.070710 AGTCCCAACTTATAAGTCTCAAGTCC 60.071 42.308 18.28 3.21 38.57 3.85
3588 10830 6.937392 AGTCCCAACTTATAAGTCTCAAGTC 58.063 40.000 18.28 6.78 38.57 3.01
3589 10831 6.936968 AGTCCCAACTTATAAGTCTCAAGT 57.063 37.500 18.28 5.74 38.57 3.16
3590 10832 9.720769 TTTTAGTCCCAACTTATAAGTCTCAAG 57.279 33.333 18.28 6.66 38.57 3.02
3620 10862 5.801380 TGTTTGGTTCATAAGTCCTAGGAC 58.199 41.667 31.29 31.29 44.86 3.85
3621 10863 5.045869 CCTGTTTGGTTCATAAGTCCTAGGA 60.046 44.000 7.62 7.62 0.00 2.94
3622 10864 5.186198 CCTGTTTGGTTCATAAGTCCTAGG 58.814 45.833 0.82 0.82 0.00 3.02
3623 10865 5.186198 CCCTGTTTGGTTCATAAGTCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
3624 10866 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
3625 10867 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
3626 10868 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
3627 10869 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
3628 10870 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
3629 10871 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
3630 10872 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
3631 10873 3.332485 AGTTAGGCCCTGTTTGGTTCATA 59.668 43.478 0.00 0.00 0.00 2.15
3632 10874 2.110011 AGTTAGGCCCTGTTTGGTTCAT 59.890 45.455 0.00 0.00 0.00 2.57
3633 10875 1.497286 AGTTAGGCCCTGTTTGGTTCA 59.503 47.619 0.00 0.00 0.00 3.18
3634 10876 1.886542 CAGTTAGGCCCTGTTTGGTTC 59.113 52.381 0.00 0.00 0.00 3.62
3635 10877 1.497286 TCAGTTAGGCCCTGTTTGGTT 59.503 47.619 0.00 0.00 0.00 3.67
3636 10878 1.145571 TCAGTTAGGCCCTGTTTGGT 58.854 50.000 0.00 0.00 0.00 3.67
3637 10879 1.534729 GTCAGTTAGGCCCTGTTTGG 58.465 55.000 0.00 0.00 0.00 3.28
3638 10880 1.534729 GGTCAGTTAGGCCCTGTTTG 58.465 55.000 0.00 0.00 35.31 2.93
3639 10881 0.036306 CGGTCAGTTAGGCCCTGTTT 59.964 55.000 0.00 0.00 39.53 2.83
3640 10882 1.125711 ACGGTCAGTTAGGCCCTGTT 61.126 55.000 0.00 0.00 39.53 3.16
3641 10883 1.535687 ACGGTCAGTTAGGCCCTGT 60.536 57.895 0.00 0.00 39.53 4.00
3642 10884 1.079127 CACGGTCAGTTAGGCCCTG 60.079 63.158 0.00 0.00 39.53 4.45
3643 10885 1.535687 ACACGGTCAGTTAGGCCCT 60.536 57.895 0.00 0.00 39.53 5.19
3644 10886 1.375523 CACACGGTCAGTTAGGCCC 60.376 63.158 0.00 0.00 39.53 5.80
3645 10887 1.375523 CCACACGGTCAGTTAGGCC 60.376 63.158 0.00 0.00 39.21 5.19
3646 10888 0.249398 ATCCACACGGTCAGTTAGGC 59.751 55.000 0.00 0.00 0.00 3.93
3647 10889 1.275291 ACATCCACACGGTCAGTTAGG 59.725 52.381 0.00 0.00 0.00 2.69
3648 10890 2.337583 CACATCCACACGGTCAGTTAG 58.662 52.381 0.00 0.00 0.00 2.34
3649 10891 1.001520 CCACATCCACACGGTCAGTTA 59.998 52.381 0.00 0.00 0.00 2.24
3650 10892 0.250295 CCACATCCACACGGTCAGTT 60.250 55.000 0.00 0.00 0.00 3.16
3651 10893 1.118965 TCCACATCCACACGGTCAGT 61.119 55.000 0.00 0.00 0.00 3.41
3652 10894 0.034756 TTCCACATCCACACGGTCAG 59.965 55.000 0.00 0.00 0.00 3.51
3653 10895 0.470341 TTTCCACATCCACACGGTCA 59.530 50.000 0.00 0.00 0.00 4.02
3654 10896 1.468520 CATTTCCACATCCACACGGTC 59.531 52.381 0.00 0.00 0.00 4.79
3655 10897 1.533625 CATTTCCACATCCACACGGT 58.466 50.000 0.00 0.00 0.00 4.83
3656 10898 0.810648 CCATTTCCACATCCACACGG 59.189 55.000 0.00 0.00 0.00 4.94
3657 10899 1.819928 TCCATTTCCACATCCACACG 58.180 50.000 0.00 0.00 0.00 4.49
3658 10900 3.119029 CCATTCCATTTCCACATCCACAC 60.119 47.826 0.00 0.00 0.00 3.82
3659 10901 3.098377 CCATTCCATTTCCACATCCACA 58.902 45.455 0.00 0.00 0.00 4.17
3660 10902 3.364549 TCCATTCCATTTCCACATCCAC 58.635 45.455 0.00 0.00 0.00 4.02
3661 10903 3.011595 ACTCCATTCCATTTCCACATCCA 59.988 43.478 0.00 0.00 0.00 3.41
3662 10904 3.382546 CACTCCATTCCATTTCCACATCC 59.617 47.826 0.00 0.00 0.00 3.51
3663 10905 3.181483 GCACTCCATTCCATTTCCACATC 60.181 47.826 0.00 0.00 0.00 3.06
3664 10906 2.762327 GCACTCCATTCCATTTCCACAT 59.238 45.455 0.00 0.00 0.00 3.21
4008 11274 4.409570 CATGCCAGCGCTCATATTAATTC 58.590 43.478 7.13 0.00 35.36 2.17
4015 11290 1.890510 CTGCATGCCAGCGCTCATA 60.891 57.895 16.68 0.00 37.31 2.15
4016 11291 3.209812 CTGCATGCCAGCGCTCAT 61.210 61.111 16.68 6.31 37.31 2.90
4021 11296 3.818787 GAACCCTGCATGCCAGCG 61.819 66.667 16.68 7.66 40.36 5.18
4176 11469 2.951457 TGAAGTTGGCGACGATGATA 57.049 45.000 0.00 0.00 0.00 2.15
4270 11563 3.027412 CCTAGTAGCAAGCAGAGGAAGA 58.973 50.000 0.00 0.00 0.00 2.87
4271 11564 3.027412 TCCTAGTAGCAAGCAGAGGAAG 58.973 50.000 0.00 0.00 30.16 3.46
4272 11565 2.761208 GTCCTAGTAGCAAGCAGAGGAA 59.239 50.000 6.03 0.00 34.94 3.36
4273 11566 2.024846 AGTCCTAGTAGCAAGCAGAGGA 60.025 50.000 0.00 0.00 0.00 3.71
4275 11568 4.204012 ACTAGTCCTAGTAGCAAGCAGAG 58.796 47.826 5.18 0.00 43.98 3.35
4276 11569 4.200874 GACTAGTCCTAGTAGCAAGCAGA 58.799 47.826 12.13 0.00 45.63 4.26
4277 11570 3.316868 GGACTAGTCCTAGTAGCAAGCAG 59.683 52.174 31.12 0.00 45.63 4.24
4278 11571 3.288964 GGACTAGTCCTAGTAGCAAGCA 58.711 50.000 31.12 0.00 45.63 3.91
4302 11625 2.252072 TAGGTTGGCGGCACAGATCC 62.252 60.000 12.92 9.54 0.00 3.36
4303 11626 1.090052 GTAGGTTGGCGGCACAGATC 61.090 60.000 12.92 0.00 0.00 2.75
4304 11627 1.078426 GTAGGTTGGCGGCACAGAT 60.078 57.895 12.92 0.15 0.00 2.90
4306 11629 0.107897 TATGTAGGTTGGCGGCACAG 60.108 55.000 12.92 0.00 0.00 3.66
4344 11671 7.068716 GGGAGAGACCAATAACAAATTAAGCAT 59.931 37.037 0.00 0.00 41.20 3.79
4384 11711 2.525629 TCTTGACCACCCGCTCCA 60.526 61.111 0.00 0.00 0.00 3.86
4430 11760 5.641209 CACCCAAATTACTCTCAAGTCTCAG 59.359 44.000 0.00 0.00 36.92 3.35
4602 12849 5.703310 AGTTACCCCATACTAGGAGTGTAG 58.297 45.833 0.00 0.00 0.00 2.74
4606 12853 4.715297 CACAAGTTACCCCATACTAGGAGT 59.285 45.833 0.00 0.00 0.00 3.85
4607 12854 4.715297 ACACAAGTTACCCCATACTAGGAG 59.285 45.833 0.00 0.00 0.00 3.69
4608 12855 4.691238 ACACAAGTTACCCCATACTAGGA 58.309 43.478 0.00 0.00 0.00 2.94
4609 12856 5.431179 AACACAAGTTACCCCATACTAGG 57.569 43.478 0.00 0.00 35.85 3.02
4610 12857 8.098912 AGTAAAACACAAGTTACCCCATACTAG 58.901 37.037 0.00 0.00 36.84 2.57
4611 12858 7.879160 CAGTAAAACACAAGTTACCCCATACTA 59.121 37.037 0.00 0.00 36.84 1.82
4612 12859 6.713450 CAGTAAAACACAAGTTACCCCATACT 59.287 38.462 0.00 0.00 36.84 2.12
4613 12860 6.569035 GCAGTAAAACACAAGTTACCCCATAC 60.569 42.308 0.00 0.00 36.84 2.39
4617 12864 3.005050 GGCAGTAAAACACAAGTTACCCC 59.995 47.826 0.00 0.00 36.84 4.95
4618 12865 3.633065 TGGCAGTAAAACACAAGTTACCC 59.367 43.478 0.00 0.00 36.84 3.69
4619 12866 4.904253 TGGCAGTAAAACACAAGTTACC 57.096 40.909 0.00 0.00 36.84 2.85
4620 12867 9.471084 AAATATTGGCAGTAAAACACAAGTTAC 57.529 29.630 0.00 0.00 36.84 2.50
4622 12869 8.825745 CAAAATATTGGCAGTAAAACACAAGTT 58.174 29.630 0.00 0.00 34.49 2.66
4623 12870 7.042119 GCAAAATATTGGCAGTAAAACACAAGT 60.042 33.333 7.33 0.00 37.02 3.16
4624 12871 7.171337 AGCAAAATATTGGCAGTAAAACACAAG 59.829 33.333 13.11 0.00 37.02 3.16
4625 12872 6.989169 AGCAAAATATTGGCAGTAAAACACAA 59.011 30.769 13.11 0.00 37.02 3.33
4626 12873 6.423302 CAGCAAAATATTGGCAGTAAAACACA 59.577 34.615 13.11 0.00 37.02 3.72
4627 12874 6.128580 CCAGCAAAATATTGGCAGTAAAACAC 60.129 38.462 13.11 0.00 37.02 3.32
4639 12886 6.974048 TCGATGAACAATCCAGCAAAATATTG 59.026 34.615 0.00 0.00 34.21 1.90
4655 12902 3.071479 GCCTGGTTAAACTCGATGAACA 58.929 45.455 0.00 0.00 0.00 3.18
4682 12929 8.456471 GGAGTAATTATGTTCAGTGGTTTTACC 58.544 37.037 0.00 0.00 39.22 2.85
4689 12980 7.630242 ACAATGGAGTAATTATGTTCAGTGG 57.370 36.000 9.88 0.00 0.00 4.00
4702 12993 5.964477 AGGGTTCAGATCTACAATGGAGTAA 59.036 40.000 0.00 0.00 0.00 2.24
4710 13001 3.427573 TGTCGAGGGTTCAGATCTACAA 58.572 45.455 0.00 0.00 0.00 2.41
4724 13015 1.686325 ATTCGGTCCCCATGTCGAGG 61.686 60.000 0.00 0.00 33.11 4.63
4766 13059 5.163642 GCACTGCTCTGAATTCTGAATCATT 60.164 40.000 14.97 8.27 0.00 2.57
4811 13104 2.555227 GGTGAGAATTTCAGGCCCTGAA 60.555 50.000 22.25 22.25 46.93 3.02
4843 13140 0.110486 GACTGGAACTGGGAAGGCAA 59.890 55.000 0.00 0.00 0.00 4.52
4862 13159 0.898320 ACCTCCTCGTCTGATTGGTG 59.102 55.000 0.00 0.00 0.00 4.17
5047 13357 0.698238 TACCCCAGCTGTGCATTTCT 59.302 50.000 13.81 0.00 0.00 2.52
5064 13374 3.815401 CTGATCCCATTCGGAACCAATAC 59.185 47.826 0.00 0.00 46.47 1.89
5065 13375 3.747388 GCTGATCCCATTCGGAACCAATA 60.747 47.826 0.00 0.00 46.47 1.90
5112 13432 9.898152 TTTTAAGTTTGTGAATCCATTTTCCTT 57.102 25.926 0.00 0.00 0.00 3.36
5164 13487 1.872313 CCTACTAGGAGTCTAACGCCG 59.128 57.143 0.11 0.00 43.27 6.46
5185 13508 4.444536 TCGCAGTAAAACACAAGTAACCT 58.555 39.130 0.00 0.00 0.00 3.50
5193 13516 6.442952 AGCAAAATATTCGCAGTAAAACACA 58.557 32.000 11.24 0.00 0.00 3.72
5205 13528 5.712217 TGAACGACCTAGCAAAATATTCG 57.288 39.130 0.00 0.00 0.00 3.34
5216 13539 4.797349 GGTTAAACTCGATGAACGACCTAG 59.203 45.833 0.00 0.00 46.45 3.02
5218 13541 3.006110 TGGTTAAACTCGATGAACGACCT 59.994 43.478 0.00 0.00 46.45 3.85
5240 13602 4.809426 CAGTGACTACGGTGAAACTTCTTT 59.191 41.667 0.00 0.00 36.74 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.