Multiple sequence alignment - TraesCS2D01G358600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2D01G358600
chr2D
100.000
5124
0
0
1
5124
460755797
460760920
0.000000e+00
9463
1
TraesCS2D01G358600
chr2A
92.918
5083
255
46
1
5027
603556912
603561945
0.000000e+00
7295
2
TraesCS2D01G358600
chr2B
94.501
3964
178
20
433
4375
542259405
542263349
0.000000e+00
6076
3
TraesCS2D01G358600
chr2B
92.635
353
22
3
58
407
542258519
542258870
5.920000e-139
505
4
TraesCS2D01G358600
chr2B
91.447
304
15
5
4822
5124
542263744
542264037
1.720000e-109
407
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2D01G358600
chr2D
460755797
460760920
5123
False
9463.000000
9463
100.000
1
5124
1
chr2D.!!$F1
5123
1
TraesCS2D01G358600
chr2A
603556912
603561945
5033
False
7295.000000
7295
92.918
1
5027
1
chr2A.!!$F1
5026
2
TraesCS2D01G358600
chr2B
542258519
542264037
5518
False
2329.333333
6076
92.861
58
5124
3
chr2B.!!$F1
5066
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
960
1505
0.108329
GGCGCAGTTAAGCTCCAGTA
60.108
55.0
10.83
0.0
39.18
2.74
F
993
1538
1.248785
TAGGGAGCGAGCGACAAAGT
61.249
55.0
0.00
0.0
0.00
2.66
F
1878
2423
1.016627
GCAATGCATCCGAGCTACAA
58.983
50.0
0.00
0.0
34.99
2.41
F
2502
3047
0.168128
GTGCGTTATCCCACAACAGC
59.832
55.0
0.00
0.0
32.37
4.40
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1815
2360
0.887933
CCAGCATGTTACCACCCAAC
59.112
55.0
0.00
0.0
0.00
3.77
R
1902
2447
0.906282
GGACCCGTCCTCTAAACCCA
60.906
60.0
6.63
0.0
46.16
4.51
R
3703
4248
0.308376
TAAACAACCGCTTCGTTGCC
59.692
50.0
7.78
0.0
45.75
4.52
R
4210
4757
0.033504
AGTTCTACACGGCCACTGTG
59.966
55.0
12.45
10.1
42.99
3.66
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
200
217
1.588597
CGCAGCACTCTTCCTCTCA
59.411
57.895
0.00
0.00
0.00
3.27
300
317
9.956720
GCATTATATGTTAGCTGAAACTGAAAT
57.043
29.630
0.00
0.00
0.00
2.17
368
385
2.749839
GCTACCACCCATGCGCAA
60.750
61.111
17.11
0.00
0.00
4.85
442
968
8.755696
TGATAACGTATACTAAAAACACGGTT
57.244
30.769
0.56
0.00
36.95
4.44
444
970
6.466308
AACGTATACTAAAAACACGGTTCC
57.534
37.500
0.56
0.00
36.95
3.62
484
1012
1.064060
GACGCTGCACTTGTTTCAACT
59.936
47.619
0.00
0.00
0.00
3.16
485
1013
1.472480
ACGCTGCACTTGTTTCAACTT
59.528
42.857
0.00
0.00
0.00
2.66
486
1014
2.094752
ACGCTGCACTTGTTTCAACTTT
60.095
40.909
0.00
0.00
0.00
2.66
487
1015
2.531508
CGCTGCACTTGTTTCAACTTTC
59.468
45.455
0.00
0.00
0.00
2.62
488
1016
3.510719
GCTGCACTTGTTTCAACTTTCA
58.489
40.909
0.00
0.00
0.00
2.69
489
1017
3.925913
GCTGCACTTGTTTCAACTTTCAA
59.074
39.130
0.00
0.00
0.00
2.69
490
1018
4.201618
GCTGCACTTGTTTCAACTTTCAAC
60.202
41.667
0.00
0.00
0.00
3.18
512
1040
6.990908
ACCCTTATTTAGAACTATACGGCT
57.009
37.500
0.00
0.00
0.00
5.52
522
1052
1.000163
ACTATACGGCTTCGCATCAGG
60.000
52.381
0.00
0.00
37.41
3.86
541
1076
2.756760
AGGCTGTACCATTGCTTGAATG
59.243
45.455
0.00
0.00
43.14
2.67
696
1231
0.724549
GTCAAGTGTCAACGTGTGCA
59.275
50.000
0.00
0.00
37.13
4.57
833
1368
3.034635
GGTCCTGTCTCCTGTGATATGT
58.965
50.000
0.00
0.00
0.00
2.29
856
1391
4.734398
ATGCTTCTGAAGACTAGAGGTG
57.266
45.455
21.06
0.00
0.00
4.00
857
1392
2.232452
TGCTTCTGAAGACTAGAGGTGC
59.768
50.000
21.06
3.03
0.00
5.01
858
1393
2.232452
GCTTCTGAAGACTAGAGGTGCA
59.768
50.000
21.06
0.00
0.00
4.57
859
1394
3.843999
CTTCTGAAGACTAGAGGTGCAC
58.156
50.000
12.01
8.80
0.00
4.57
937
1482
8.404000
GCTTCATTCAGATCTTTTACATGTGAT
58.596
33.333
9.11
1.95
0.00
3.06
947
1492
1.655484
TACATGTGATTCAGGCGCAG
58.345
50.000
10.83
0.00
0.00
5.18
952
1497
2.076100
TGTGATTCAGGCGCAGTTAAG
58.924
47.619
10.83
0.00
0.00
1.85
960
1505
0.108329
GGCGCAGTTAAGCTCCAGTA
60.108
55.000
10.83
0.00
39.18
2.74
993
1538
1.248785
TAGGGAGCGAGCGACAAAGT
61.249
55.000
0.00
0.00
0.00
2.66
1140
1685
1.518352
CGCAATCACCGACGATCCA
60.518
57.895
0.00
0.00
0.00
3.41
1211
1756
1.300931
GTGTGAAGTGCAGCCTCGA
60.301
57.895
0.00
0.00
0.00
4.04
1224
1769
2.002127
CCTCGAAGAACATGAGCGC
58.998
57.895
0.00
0.00
34.09
5.92
1245
1790
2.125753
GCAGAGCTGGACCTGTCG
60.126
66.667
0.00
0.00
33.19
4.35
1365
1910
2.769652
ATCTTGGCCGGCTGCAAGAA
62.770
55.000
36.02
25.05
43.89
2.52
1423
1968
2.128035
GGATTATTCCAGTGACGCTCG
58.872
52.381
0.00
0.00
42.12
5.03
1485
2030
4.746466
ACTTATTGGTGGGTGAAATTCCA
58.254
39.130
0.00
0.00
0.00
3.53
1815
2360
2.098770
CCCTAACCTCCGACTTCTTACG
59.901
54.545
0.00
0.00
0.00
3.18
1878
2423
1.016627
GCAATGCATCCGAGCTACAA
58.983
50.000
0.00
0.00
34.99
2.41
1917
2462
3.560636
AATCATGGGTTTAGAGGACGG
57.439
47.619
0.00
0.00
0.00
4.79
1941
2486
3.326880
TCCCACCTTCTCTTGGTAAACTC
59.673
47.826
0.00
0.00
35.80
3.01
1951
2496
0.611714
TGGTAAACTCCCGAAGCTCC
59.388
55.000
0.00
0.00
0.00
4.70
2213
2758
2.180276
GCTAGGACTGGAGGAGAACAA
58.820
52.381
0.00
0.00
0.00
2.83
2214
2759
2.167487
GCTAGGACTGGAGGAGAACAAG
59.833
54.545
0.00
0.00
0.00
3.16
2239
2784
1.417517
CTGGTCCGATTGATGGATGGA
59.582
52.381
0.00
0.00
37.93
3.41
2259
2804
8.641541
GGATGGATTGGAAATCTTGCTAATTTA
58.358
33.333
0.40
0.00
0.00
1.40
2295
2840
5.885352
TCTTCAACAGAACAATTTCACTGGA
59.115
36.000
0.00
0.00
33.72
3.86
2455
3000
8.807948
TCTTCAAGAAAATATACCCAAAGAGG
57.192
34.615
0.00
0.00
37.03
3.69
2502
3047
0.168128
GTGCGTTATCCCACAACAGC
59.832
55.000
0.00
0.00
32.37
4.40
2643
3188
4.519540
CATCAAAATGGACCGGAACTTT
57.480
40.909
9.46
1.64
0.00
2.66
2913
3458
3.694058
ATGCCCCGCTGCTTCTCAG
62.694
63.158
0.00
0.00
45.62
3.35
3037
3582
0.864455
GCTGAGGATGCAGTTATCGC
59.136
55.000
0.00
0.00
38.17
4.58
3159
3704
2.869801
CGGTTCAGTGTACAGAGCAAAA
59.130
45.455
0.00
0.00
0.00
2.44
3167
3712
4.820173
AGTGTACAGAGCAAAACTAAACCC
59.180
41.667
0.00
0.00
0.00
4.11
3178
3723
5.277297
GCAAAACTAAACCCAAAACAGATGC
60.277
40.000
0.00
0.00
0.00
3.91
3249
3794
6.414408
AGTTTCATCTCAGAATGTAAAGCG
57.586
37.500
0.00
0.00
37.40
4.68
3252
3797
4.115516
TCATCTCAGAATGTAAAGCGCTC
58.884
43.478
12.06
0.00
37.40
5.03
3258
3803
4.937620
TCAGAATGTAAAGCGCTCAGAAAT
59.062
37.500
12.06
0.00
37.40
2.17
3267
3812
1.532868
GCGCTCAGAAATATTCGGCAT
59.467
47.619
0.00
0.00
34.02
4.40
3288
3833
5.760253
GCATCGGAATCTTCTTCCAATTCTA
59.240
40.000
4.98
0.00
38.49
2.10
3319
3864
4.035558
GCTCAACAATTGATAATCGAGGCA
59.964
41.667
13.59
0.00
39.30
4.75
3395
3940
1.607801
CTGCACCCGACAGGAGATGA
61.608
60.000
0.00
0.00
41.02
2.92
3401
3946
2.290323
ACCCGACAGGAGATGAAAAAGG
60.290
50.000
0.00
0.00
41.02
3.11
3412
3957
5.308014
GAGATGAAAAAGGCCCAAAACAAT
58.692
37.500
0.00
0.00
0.00
2.71
3442
3987
7.552330
ACCTCTCTCAAAGAATGAAAATAGCTC
59.448
37.037
0.00
0.00
37.67
4.09
3564
4109
0.955919
CAGCTCGTTTGGGGGACTTC
60.956
60.000
0.00
0.00
0.00
3.01
3600
4145
5.164620
TCTACATCAAATCCAAGTCAGCA
57.835
39.130
0.00
0.00
0.00
4.41
3633
4178
5.469479
GGTTTGAGTTCAATGGGTACAATG
58.531
41.667
0.00
0.00
35.55
2.82
3703
4248
4.484236
TCTTGCTGTAAATTTGAATGCGG
58.516
39.130
0.00
0.00
0.00
5.69
3793
4338
0.682292
GCAGCTACCTATCCACCTCC
59.318
60.000
0.00
0.00
0.00
4.30
3897
4442
4.766007
CTTGACATCGTGAACTTTGTCAG
58.234
43.478
12.24
6.58
46.39
3.51
3923
4468
5.051153
GGAACTTTCCGGATCAGATACTTC
58.949
45.833
16.32
9.79
37.65
3.01
3964
4509
0.813821
GGGAAGAATGCCAAGACTGC
59.186
55.000
0.00
0.00
32.29
4.40
3967
4512
1.742268
GAAGAATGCCAAGACTGCTCC
59.258
52.381
0.00
0.00
0.00
4.70
4010
4555
3.168528
AAGTCCACCGGTGCCTGT
61.169
61.111
29.75
11.07
0.00
4.00
4060
4605
0.312416
CGAGCCAGGATCCTAACGAG
59.688
60.000
15.67
0.85
0.00
4.18
4066
4611
2.608261
CCAGGATCCTAACGAGCGAATC
60.608
54.545
15.67
0.00
0.00
2.52
4106
4651
3.114483
GAACTGCACGCGATCGACG
62.114
63.158
21.57
22.84
45.66
5.12
4135
4680
3.664107
TGTGTCTTGAAGTGGATGCTAC
58.336
45.455
0.00
0.00
0.00
3.58
4196
4743
3.761311
AGCGTGTAACTAGAGCTGTAC
57.239
47.619
0.00
0.00
36.73
2.90
4210
4757
6.102897
AGAGCTGTACCATACATTCATACC
57.897
41.667
0.00
0.00
38.15
2.73
4259
4807
7.170393
ACTCTAGAAAATTATTTGTTGGGCC
57.830
36.000
0.00
0.00
0.00
5.80
4261
4809
3.595173
AGAAAATTATTTGTTGGGCCGC
58.405
40.909
0.00
0.00
0.00
6.53
4269
4817
4.700365
GTTGGGCCGCGACTTTGC
62.700
66.667
8.23
0.41
0.00
3.68
4308
4857
2.727798
CTCATCTTTTTGCAAAGCACGG
59.272
45.455
12.41
4.16
38.71
4.94
4384
4933
3.488778
AGATTGCCCTGACATCATCTC
57.511
47.619
0.00
0.00
0.00
2.75
4388
4937
3.438216
TGCCCTGACATCATCTCAAAA
57.562
42.857
0.00
0.00
0.00
2.44
4390
4939
3.507233
TGCCCTGACATCATCTCAAAAAC
59.493
43.478
0.00
0.00
0.00
2.43
4391
4940
3.507233
GCCCTGACATCATCTCAAAAACA
59.493
43.478
0.00
0.00
0.00
2.83
4392
4941
4.022068
GCCCTGACATCATCTCAAAAACAA
60.022
41.667
0.00
0.00
0.00
2.83
4393
4942
5.509501
GCCCTGACATCATCTCAAAAACAAA
60.510
40.000
0.00
0.00
0.00
2.83
4394
4943
6.514947
CCCTGACATCATCTCAAAAACAAAA
58.485
36.000
0.00
0.00
0.00
2.44
4395
4944
6.643770
CCCTGACATCATCTCAAAAACAAAAG
59.356
38.462
0.00
0.00
0.00
2.27
4404
4953
8.819974
TCATCTCAAAAACAAAAGAAAGATTGC
58.180
29.630
0.00
0.00
0.00
3.56
4415
4964
6.916360
AAAGAAAGATTGCCCTGACATTTA
57.084
33.333
0.00
0.00
0.00
1.40
4431
4980
7.408756
TGACATTTAGCTTTTTGCCTGATAT
57.591
32.000
0.00
0.00
44.23
1.63
4432
4981
8.518430
TGACATTTAGCTTTTTGCCTGATATA
57.482
30.769
0.00
0.00
44.23
0.86
4439
4988
5.951747
AGCTTTTTGCCTGATATAAGGTGAA
59.048
36.000
8.02
0.62
44.23
3.18
4450
4999
7.015226
TGATATAAGGTGAATGCAGAAAACG
57.985
36.000
0.00
0.00
0.00
3.60
4458
5007
7.051623
AGGTGAATGCAGAAAACGGTATATTA
58.948
34.615
0.00
0.00
0.00
0.98
4472
5021
6.921914
ACGGTATATTATTGTCAGGCTACTC
58.078
40.000
0.00
0.00
0.00
2.59
4477
5026
1.207791
ATTGTCAGGCTACTCCAGGG
58.792
55.000
0.00
0.00
37.29
4.45
4478
5027
0.178903
TTGTCAGGCTACTCCAGGGT
60.179
55.000
0.00
0.00
37.29
4.34
4516
5075
0.749649
TTTGCACATGTTGGGTCCAC
59.250
50.000
0.00
0.00
0.00
4.02
4519
5078
1.959085
CACATGTTGGGTCCACTGC
59.041
57.895
0.00
0.00
0.00
4.40
4530
5089
2.554344
GGGTCCACTGCCAAGTTGATAA
60.554
50.000
3.87
0.00
32.98
1.75
4532
5091
3.129287
GGTCCACTGCCAAGTTGATAATG
59.871
47.826
3.87
0.00
32.98
1.90
4592
5178
1.494628
GCATATGCGTCGATGCTGG
59.505
57.895
28.53
16.27
44.15
4.85
4658
5247
1.736681
GATGCTGCTCACTGGAAGAAC
59.263
52.381
0.00
0.00
37.43
3.01
4682
5271
9.546428
AACTGAATTGGTATCAAAAGGAAAAAG
57.454
29.630
0.00
0.00
36.36
2.27
4710
5299
0.179020
CTGGGCGCTTCCATTCCATA
60.179
55.000
7.64
0.00
36.05
2.74
4798
5392
5.470437
TGACTAGAGTAGAAGCATCATACGG
59.530
44.000
0.00
0.00
0.00
4.02
4866
5460
2.039974
ATCCGCGCATGTTGCTGAA
61.040
52.632
8.75
0.00
42.25
3.02
4867
5461
1.378882
ATCCGCGCATGTTGCTGAAT
61.379
50.000
8.75
0.00
42.25
2.57
4868
5462
1.870458
CCGCGCATGTTGCTGAATG
60.870
57.895
8.75
0.00
42.25
2.67
4869
5463
2.502123
CGCGCATGTTGCTGAATGC
61.502
57.895
8.75
7.68
42.25
3.56
4870
5464
1.153901
GCGCATGTTGCTGAATGCT
60.154
52.632
0.30
0.00
45.62
3.79
4871
5465
1.410737
GCGCATGTTGCTGAATGCTG
61.411
55.000
0.30
9.48
45.62
4.41
4872
5466
0.169451
CGCATGTTGCTGAATGCTGA
59.831
50.000
13.58
0.00
45.62
4.26
4873
5467
1.202256
CGCATGTTGCTGAATGCTGAT
60.202
47.619
13.58
0.00
45.62
2.90
4874
5468
2.460918
GCATGTTGCTGAATGCTGATC
58.539
47.619
9.80
0.00
44.64
2.92
4875
5469
2.099263
GCATGTTGCTGAATGCTGATCT
59.901
45.455
9.80
0.00
44.64
2.75
4876
5470
3.314357
GCATGTTGCTGAATGCTGATCTA
59.686
43.478
9.80
0.00
44.64
1.98
4881
5475
3.969899
TGCTGAATGCTGATCTACTACG
58.030
45.455
0.00
0.00
43.37
3.51
4903
5497
9.239002
CTACGTCCAGATAAGAAAAGAGTTATG
57.761
37.037
0.00
0.00
0.00
1.90
4946
5540
2.287009
CGTGGAAGGACAGAAAACTTGC
60.287
50.000
0.00
0.00
33.80
4.01
4991
5586
4.396478
GTGGAAAACCTTAGAATCAGCCTC
59.604
45.833
0.00
0.00
0.00
4.70
5003
5598
3.777106
ATCAGCCTCAAACAAGACTGA
57.223
42.857
0.00
0.00
38.42
3.41
5043
5638
3.190118
GCTCAACTGAACAATTCTCCCTG
59.810
47.826
0.00
0.00
0.00
4.45
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
2
3
2.049156
TGCTGGTTCTCTCACGCG
60.049
61.111
3.53
3.53
0.00
6.01
55
56
2.046314
TTGCTAGGGTTCGGCTGC
60.046
61.111
0.00
0.00
0.00
5.25
121
133
1.074471
GTGCCATAGGGAGGGAGGA
60.074
63.158
0.00
0.00
35.59
3.71
157
174
2.257371
CGCCGACGGAGAAGACAA
59.743
61.111
20.50
0.00
34.97
3.18
185
202
1.173043
CGACTGAGAGGAAGAGTGCT
58.827
55.000
0.00
0.00
0.00
4.40
283
300
9.730420
TTTAACAAGATTTCAGTTTCAGCTAAC
57.270
29.630
0.00
0.00
0.00
2.34
300
317
6.861065
ACTTTCAGCTCGAATTTAACAAGA
57.139
33.333
0.00
0.00
32.32
3.02
424
441
7.092716
TCTGAGGAACCGTGTTTTTAGTATAC
58.907
38.462
0.00
0.00
0.00
1.47
428
445
4.411256
TCTGAGGAACCGTGTTTTTAGT
57.589
40.909
0.00
0.00
0.00
2.24
442
968
5.358442
GTCAGTACTCTTAAGCATCTGAGGA
59.642
44.000
14.73
0.00
31.93
3.71
444
970
5.270083
CGTCAGTACTCTTAAGCATCTGAG
58.730
45.833
14.73
3.63
31.93
3.35
484
1012
9.603921
CCGTATAGTTCTAAATAAGGGTTGAAA
57.396
33.333
0.00
0.00
0.00
2.69
485
1013
7.712205
GCCGTATAGTTCTAAATAAGGGTTGAA
59.288
37.037
0.00
0.00
30.56
2.69
486
1014
7.070322
AGCCGTATAGTTCTAAATAAGGGTTGA
59.930
37.037
0.00
0.00
35.35
3.18
487
1015
7.215085
AGCCGTATAGTTCTAAATAAGGGTTG
58.785
38.462
0.00
0.00
35.35
3.77
488
1016
7.370905
AGCCGTATAGTTCTAAATAAGGGTT
57.629
36.000
0.00
0.00
35.35
4.11
489
1017
6.990908
AGCCGTATAGTTCTAAATAAGGGT
57.009
37.500
0.00
0.00
34.48
4.34
490
1018
6.585322
CGAAGCCGTATAGTTCTAAATAAGGG
59.415
42.308
0.00
0.00
30.56
3.95
541
1076
4.266739
CGCTTTTACACTTTGTTTGGAACC
59.733
41.667
0.00
0.00
0.00
3.62
771
1306
3.997021
GGTGGAGATGAGTGTTGTAGTTG
59.003
47.826
0.00
0.00
0.00
3.16
833
1368
5.394663
GCACCTCTAGTCTTCAGAAGCATAA
60.395
44.000
5.15
0.00
0.00
1.90
856
1391
2.099921
TCATAGAGAGAAGAAGCGGTGC
59.900
50.000
0.00
0.00
0.00
5.01
857
1392
4.377839
TTCATAGAGAGAAGAAGCGGTG
57.622
45.455
0.00
0.00
0.00
4.94
858
1393
6.909550
ATATTCATAGAGAGAAGAAGCGGT
57.090
37.500
0.00
0.00
0.00
5.68
859
1394
8.494347
CAAAATATTCATAGAGAGAAGAAGCGG
58.506
37.037
0.00
0.00
0.00
5.52
937
1482
0.673644
GGAGCTTAACTGCGCCTGAA
60.674
55.000
4.18
0.00
46.93
3.02
947
1492
4.260375
CGTGATGCAATACTGGAGCTTAAC
60.260
45.833
0.00
0.00
29.43
2.01
952
1497
1.939974
TCGTGATGCAATACTGGAGC
58.060
50.000
0.00
0.00
0.00
4.70
960
1505
2.880890
GCTCCCTATTTCGTGATGCAAT
59.119
45.455
0.00
0.00
0.00
3.56
993
1538
3.618594
GCACGAAGAGCTTCATGACATAA
59.381
43.478
10.15
0.00
41.95
1.90
1036
1581
4.996122
GCTTCCAGATCCATGAGACAATAG
59.004
45.833
0.00
0.00
0.00
1.73
1170
1715
1.024271
GCCAGTTGCAGAAGTGAACA
58.976
50.000
0.00
0.00
40.77
3.18
1171
1716
3.853623
GCCAGTTGCAGAAGTGAAC
57.146
52.632
0.00
0.00
40.77
3.18
1211
1756
1.207593
GCAACGCGCTCATGTTCTT
59.792
52.632
5.73
0.00
37.77
2.52
1224
1769
2.031516
CAGGTCCAGCTCTGCAACG
61.032
63.158
0.00
0.00
0.00
4.10
1245
1790
0.955919
CCCCGACAAAACTCTGCTCC
60.956
60.000
0.00
0.00
0.00
4.70
1281
1826
9.698309
AGATAAGTAAGATATGACATGTTTCCG
57.302
33.333
0.00
0.00
0.00
4.30
1365
1910
3.041946
ACTCAGGTCAAGAAACTCCAGT
58.958
45.455
0.00
0.00
0.00
4.00
1423
1968
1.000938
CCTCAAGTTGGAGCAGTTTGC
60.001
52.381
2.34
0.00
45.46
3.68
1485
2030
4.820775
TGGAGAGTAGGGATATTTCTGCT
58.179
43.478
0.00
0.00
0.00
4.24
1815
2360
0.887933
CCAGCATGTTACCACCCAAC
59.112
55.000
0.00
0.00
0.00
3.77
1902
2447
0.906282
GGACCCGTCCTCTAAACCCA
60.906
60.000
6.63
0.00
46.16
4.51
1917
2462
1.652947
TACCAAGAGAAGGTGGGACC
58.347
55.000
0.00
0.00
40.26
4.46
1951
2496
3.570926
TGTGTCAAGACCTAGCTTACG
57.429
47.619
0.00
0.00
0.00
3.18
2160
2705
7.237263
AGTCTATGGAGATTTCCTATGCTTGAT
59.763
37.037
3.60
0.00
44.36
2.57
2213
2758
2.355108
CCATCAATCGGACCAGTCAACT
60.355
50.000
0.00
0.00
0.00
3.16
2214
2759
2.009774
CCATCAATCGGACCAGTCAAC
58.990
52.381
0.00
0.00
0.00
3.18
2239
2784
8.815912
ACCTTGTAAATTAGCAAGATTTCCAAT
58.184
29.630
18.10
0.00
43.29
3.16
2259
2804
8.918202
TGTTCTGTTGAAGATATAAACCTTGT
57.082
30.769
0.00
0.00
33.93
3.16
2448
2993
5.758924
GTGGCTACACTAAAAACCTCTTTG
58.241
41.667
0.00
0.00
44.29
2.77
2502
3047
3.282885
GTGAGGAATTTGGCCTTCTAGG
58.717
50.000
3.32
0.00
38.80
3.02
2699
3244
5.065731
CCTGAGAGATTGTTATGTGAAAGGC
59.934
44.000
0.00
0.00
0.00
4.35
2913
3458
5.275067
AGTGTTGCCATCTAGATCTTCTC
57.725
43.478
1.03
0.00
0.00
2.87
3098
3643
4.876107
TCAAGTTTGACTCTGTGAAGTTCC
59.124
41.667
0.00
0.00
31.01
3.62
3110
3655
3.652869
TCCTCTCCCAATCAAGTTTGACT
59.347
43.478
0.00
0.00
40.49
3.41
3111
3656
4.021102
TCCTCTCCCAATCAAGTTTGAC
57.979
45.455
0.00
0.00
40.49
3.18
3114
3659
3.075134
AGCTTCCTCTCCCAATCAAGTTT
59.925
43.478
0.00
0.00
0.00
2.66
3159
3704
4.649218
ACAAGCATCTGTTTTGGGTTTAGT
59.351
37.500
0.00
0.00
0.00
2.24
3178
3723
4.327087
GTCAAAAACTTTCACTGCCACAAG
59.673
41.667
0.00
0.00
0.00
3.16
3249
3794
2.158449
CCGATGCCGAATATTTCTGAGC
59.842
50.000
0.00
0.00
38.22
4.26
3252
3797
4.692625
AGATTCCGATGCCGAATATTTCTG
59.307
41.667
0.00
0.00
38.22
3.02
3258
3803
4.307432
GAAGAAGATTCCGATGCCGAATA
58.693
43.478
0.00
0.00
38.22
1.75
3267
3812
6.818644
CAGTTAGAATTGGAAGAAGATTCCGA
59.181
38.462
0.00
0.00
41.43
4.55
3288
3833
4.530710
ATCAATTGTTGAGCATGCAGTT
57.469
36.364
21.98
0.00
43.98
3.16
3319
3864
5.129650
GGTAGACTAGAGCTTTGAAATCCCT
59.870
44.000
0.00
0.00
0.00
4.20
3395
3940
3.951037
GTCCAATTGTTTTGGGCCTTTTT
59.049
39.130
4.53
0.00
38.20
1.94
3401
3946
1.970640
AGAGGTCCAATTGTTTTGGGC
59.029
47.619
4.43
2.55
43.19
5.36
3412
3957
5.567037
TTCATTCTTTGAGAGAGGTCCAA
57.433
39.130
0.00
0.00
35.27
3.53
3442
3987
3.437741
TGCAATGCATCGGCTATATCAAG
59.562
43.478
20.04
0.00
41.91
3.02
3564
4109
0.739462
TGTAGAACCTTGCGATGCCG
60.739
55.000
0.00
0.00
39.16
5.69
3600
4145
2.011617
AACTCAAACCCCCAGCTGCT
62.012
55.000
8.66
0.00
0.00
4.24
3609
4154
3.492337
TGTACCCATTGAACTCAAACCC
58.508
45.455
0.00
0.00
39.55
4.11
3614
4159
5.013079
AGAGTCATTGTACCCATTGAACTCA
59.987
40.000
0.00
0.00
35.07
3.41
3633
4178
1.363744
CAATCGTGCCCTTCAGAGTC
58.636
55.000
0.00
0.00
0.00
3.36
3703
4248
0.308376
TAAACAACCGCTTCGTTGCC
59.692
50.000
7.78
0.00
45.75
4.52
3740
4285
7.417496
ACTCTGAATACCAAGTAAAACGTTC
57.583
36.000
0.00
0.00
0.00
3.95
3751
4296
4.101585
CCTCCTGCATACTCTGAATACCAA
59.898
45.833
0.00
0.00
0.00
3.67
3793
4338
1.790623
CCAAAACTGTACACGTCTCCG
59.209
52.381
0.00
0.00
40.83
4.63
3897
4442
1.831736
TCTGATCCGGAAAGTTCCTCC
59.168
52.381
9.01
0.00
45.33
4.30
3923
4468
3.648009
GGAGAGAAGCGTCAAGGATATG
58.352
50.000
1.61
0.00
0.00
1.78
3984
4529
0.317479
CCGGTGGACTTCGTTCTCTT
59.683
55.000
0.00
0.00
0.00
2.85
3988
4533
2.315386
GCACCGGTGGACTTCGTTC
61.315
63.158
34.58
11.86
0.00
3.95
4010
4555
1.032014
GCCACTTTCAGCAAGGACAA
58.968
50.000
0.00
0.00
36.72
3.18
4060
4605
2.674852
TGCTTCTCTCATGTTGATTCGC
59.325
45.455
0.00
0.00
0.00
4.70
4066
4611
3.617706
CAGTAGCTGCTTCTCTCATGTTG
59.382
47.826
7.79
0.00
0.00
3.33
4106
4651
1.326548
ACTTCAAGACACAAACGACGC
59.673
47.619
0.00
0.00
0.00
5.19
4113
4658
3.213206
AGCATCCACTTCAAGACACAA
57.787
42.857
0.00
0.00
0.00
3.33
4135
4680
8.252964
TGTATGTATGATACAGCTCTAGTACG
57.747
38.462
11.32
0.00
42.77
3.67
4196
4743
3.565482
GCCACTGTGGTATGAATGTATGG
59.435
47.826
26.48
0.00
40.46
2.74
4210
4757
0.033504
AGTTCTACACGGCCACTGTG
59.966
55.000
12.45
10.10
42.99
3.66
4259
4807
2.167861
GGCTAGGAGCAAAGTCGCG
61.168
63.158
0.00
0.00
44.75
5.87
4261
4809
1.734465
CAAAGGCTAGGAGCAAAGTCG
59.266
52.381
0.21
0.00
44.75
4.18
4269
4817
3.614092
TGAGCATTTCAAAGGCTAGGAG
58.386
45.455
9.74
0.00
38.15
3.69
4335
4884
7.719483
AGGAACATGCATACCATCTTTTTATG
58.281
34.615
15.70
0.00
29.71
1.90
4337
4886
7.395772
TGAAGGAACATGCATACCATCTTTTTA
59.604
33.333
16.81
2.20
29.71
1.52
4341
4890
4.858850
TGAAGGAACATGCATACCATCTT
58.141
39.130
16.81
10.46
29.71
2.40
4342
4891
4.508551
TGAAGGAACATGCATACCATCT
57.491
40.909
16.81
4.17
29.71
2.90
4384
4933
6.315891
TCAGGGCAATCTTTCTTTTGTTTTTG
59.684
34.615
0.00
0.00
0.00
2.44
4388
4937
4.405358
TGTCAGGGCAATCTTTCTTTTGTT
59.595
37.500
0.00
0.00
0.00
2.83
4390
4939
4.589216
TGTCAGGGCAATCTTTCTTTTG
57.411
40.909
0.00
0.00
0.00
2.44
4391
4940
5.813513
AATGTCAGGGCAATCTTTCTTTT
57.186
34.783
0.00
0.00
0.00
2.27
4392
4941
5.813513
AAATGTCAGGGCAATCTTTCTTT
57.186
34.783
0.00
0.00
0.00
2.52
4393
4942
5.105595
GCTAAATGTCAGGGCAATCTTTCTT
60.106
40.000
0.00
0.00
0.00
2.52
4394
4943
4.400567
GCTAAATGTCAGGGCAATCTTTCT
59.599
41.667
0.00
0.00
0.00
2.52
4395
4944
4.400567
AGCTAAATGTCAGGGCAATCTTTC
59.599
41.667
0.00
0.00
0.00
2.62
4404
4953
3.259123
AGGCAAAAAGCTAAATGTCAGGG
59.741
43.478
0.00
0.00
44.79
4.45
4415
4964
5.509498
TCACCTTATATCAGGCAAAAAGCT
58.491
37.500
2.65
0.00
44.79
3.74
4431
4980
3.482436
ACCGTTTTCTGCATTCACCTTA
58.518
40.909
0.00
0.00
0.00
2.69
4432
4981
2.306847
ACCGTTTTCTGCATTCACCTT
58.693
42.857
0.00
0.00
0.00
3.50
4439
4988
8.445275
TGACAATAATATACCGTTTTCTGCAT
57.555
30.769
0.00
0.00
0.00
3.96
4450
4999
7.241042
TGGAGTAGCCTGACAATAATATACC
57.759
40.000
0.00
0.00
37.63
2.73
4458
5007
1.207791
CCCTGGAGTAGCCTGACAAT
58.792
55.000
0.00
0.00
37.79
2.71
4477
5026
1.360192
GTTGTGCACTCCAGGCAAC
59.640
57.895
19.41
8.34
43.91
4.17
4478
5027
0.467844
ATGTTGTGCACTCCAGGCAA
60.468
50.000
19.41
0.00
43.91
4.52
4516
5075
6.675026
CATCATACCATTATCAACTTGGCAG
58.325
40.000
0.00
0.00
33.66
4.85
4519
5078
5.047802
GGGCATCATACCATTATCAACTTGG
60.048
44.000
0.00
0.00
36.56
3.61
4530
5089
4.043812
AGAGCATAAAGGGCATCATACCAT
59.956
41.667
0.00
0.00
0.00
3.55
4532
5091
3.755378
CAGAGCATAAAGGGCATCATACC
59.245
47.826
0.00
0.00
0.00
2.73
4617
5204
2.483889
CGATGCTCTCCCCTAAGAAACC
60.484
54.545
0.00
0.00
0.00
3.27
4658
5247
7.603784
CCCTTTTTCCTTTTGATACCAATTCAG
59.396
37.037
0.00
0.00
31.46
3.02
4710
5299
2.283145
AGGCTTTCATTCACACAGCT
57.717
45.000
0.00
0.00
0.00
4.24
4798
5392
8.346300
TGAAGAGAAGATAACGACACTATGATC
58.654
37.037
0.00
0.00
0.00
2.92
4903
5497
4.804139
CGTCTCAGTTACATGTGGGAATAC
59.196
45.833
9.11
0.00
0.00
1.89
4907
5501
2.029380
CACGTCTCAGTTACATGTGGGA
60.029
50.000
9.11
0.00
0.00
4.37
4991
5586
5.505173
AGGTCAAATGTCAGTCTTGTTTG
57.495
39.130
0.00
0.00
0.00
2.93
5043
5638
8.019094
ACTGTACACATTTTAATTTTAGCGACC
58.981
33.333
0.00
0.00
0.00
4.79
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.