Multiple sequence alignment - TraesCS2D01G357900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G357900 chr2D 100.000 4620 0 0 1 4620 459829690 459834309 0.000000e+00 8532.0
1 TraesCS2D01G357900 chr2D 96.454 2002 45 10 1169 3164 155549162 155547181 0.000000e+00 3280.0
2 TraesCS2D01G357900 chr2D 98.318 1189 16 3 1169 2355 114802129 114803315 0.000000e+00 2082.0
3 TraesCS2D01G357900 chr2D 98.250 800 11 1 3824 4620 155546820 155546021 0.000000e+00 1397.0
4 TraesCS2D01G357900 chr2D 97.875 800 14 1 3824 4620 11086633 11085834 0.000000e+00 1380.0
5 TraesCS2D01G357900 chr2D 93.590 546 12 10 3236 3758 114804507 114805052 0.000000e+00 793.0
6 TraesCS2D01G357900 chr2D 88.474 616 20 14 3166 3758 97606105 97606692 0.000000e+00 697.0
7 TraesCS2D01G357900 chr2D 79.465 823 88 35 1 764 38266686 38265886 4.120000e-140 508.0
8 TraesCS2D01G357900 chr2D 87.113 194 2 8 3553 3724 11086940 11086748 1.010000e-46 198.0
9 TraesCS2D01G357900 chr2D 100.000 79 0 0 3732 3810 459833369 459833447 3.720000e-31 147.0
10 TraesCS2D01G357900 chr2D 100.000 79 0 0 3680 3758 459833421 459833499 3.720000e-31 147.0
11 TraesCS2D01G357900 chr2D 91.176 68 4 1 1081 1146 562226723 562226656 1.770000e-14 91.6
12 TraesCS2D01G357900 chr2D 100.000 28 0 0 735 762 395061103 395061076 8.000000e-03 52.8
13 TraesCS2D01G357900 chr3D 98.433 2298 23 8 1169 3455 595953694 595951399 0.000000e+00 4032.0
14 TraesCS2D01G357900 chr3D 96.947 2129 38 13 1168 3282 114397631 114395516 0.000000e+00 3546.0
15 TraesCS2D01G357900 chr3D 98.952 859 9 0 3762 4620 406150141 406149283 0.000000e+00 1537.0
16 TraesCS2D01G357900 chr3D 98.719 859 11 0 3762 4620 66255837 66256695 0.000000e+00 1526.0
17 TraesCS2D01G357900 chr3D 99.122 797 7 0 3824 4620 114394206 114393410 0.000000e+00 1434.0
18 TraesCS2D01G357900 chr3D 97.550 449 11 0 3109 3557 114395597 114395149 0.000000e+00 769.0
19 TraesCS2D01G357900 chr3D 97.753 445 10 0 3314 3758 595951067 595950623 0.000000e+00 767.0
20 TraesCS2D01G357900 chr3D 98.400 375 6 0 3384 3758 114394679 114394305 0.000000e+00 660.0
21 TraesCS2D01G357900 chr3D 80.296 609 65 19 208 762 537138299 537137692 4.300000e-110 409.0
22 TraesCS2D01G357900 chr3D 96.970 33 0 1 735 767 565709796 565709765 2.000000e-03 54.7
23 TraesCS2D01G357900 chr3D 100.000 28 0 0 735 762 114226726 114226699 8.000000e-03 52.8
24 TraesCS2D01G357900 chr7D 96.861 2421 41 4 1169 3557 370966230 370963813 0.000000e+00 4017.0
25 TraesCS2D01G357900 chr7D 97.737 1193 27 0 2365 3557 510433884 510432692 0.000000e+00 2054.0
26 TraesCS2D01G357900 chr7D 99.122 797 6 1 3824 4620 370961498 370960703 0.000000e+00 1432.0
27 TraesCS2D01G357900 chr7D 98.169 437 8 0 3322 3758 370962033 370961597 0.000000e+00 763.0
28 TraesCS2D01G357900 chr7D 98.980 98 1 0 3732 3829 370961675 370961578 4.750000e-40 176.0
29 TraesCS2D01G357900 chr6D 96.175 2379 27 9 1169 3506 81150542 81148187 0.000000e+00 3831.0
30 TraesCS2D01G357900 chr6D 98.875 800 6 1 3824 4620 81147467 81146668 0.000000e+00 1424.0
31 TraesCS2D01G357900 chr6D 98.387 372 6 0 3387 3758 81147937 81147566 0.000000e+00 654.0
32 TraesCS2D01G357900 chr6D 98.980 98 1 0 3732 3829 81147644 81147547 4.750000e-40 176.0
33 TraesCS2D01G357900 chr6D 85.149 101 12 2 1048 1146 6227507 6227408 2.940000e-17 100.0
34 TraesCS2D01G357900 chr1A 95.830 2350 77 6 1169 3515 1315709 1318040 0.000000e+00 3777.0
35 TraesCS2D01G357900 chr7A 94.829 2398 85 14 1168 3557 100756028 100753662 0.000000e+00 3705.0
36 TraesCS2D01G357900 chr7A 93.480 2132 97 18 1442 3553 652923893 652926002 0.000000e+00 3129.0
37 TraesCS2D01G357900 chr7A 77.822 505 90 14 2 491 639775197 639775694 4.520000e-75 292.0
38 TraesCS2D01G357900 chr4D 95.284 2290 59 19 1169 3422 414636101 414633825 0.000000e+00 3585.0
39 TraesCS2D01G357900 chr4D 99.498 797 3 1 3824 4620 469104915 469105710 0.000000e+00 1448.0
40 TraesCS2D01G357900 chr4D 97.875 800 14 1 3824 4620 414632812 414632013 0.000000e+00 1380.0
41 TraesCS2D01G357900 chr4D 80.822 803 106 25 2 769 349136333 349137122 1.850000e-163 586.0
42 TraesCS2D01G357900 chr5D 98.655 1190 13 2 1168 2355 58672899 58671711 0.000000e+00 2106.0
43 TraesCS2D01G357900 chr5D 96.421 475 16 1 3284 3758 58670617 58670144 0.000000e+00 782.0
44 TraesCS2D01G357900 chr2B 89.053 676 55 9 1 657 541100284 541100959 0.000000e+00 821.0
45 TraesCS2D01G357900 chr2B 95.000 260 12 1 700 959 541100968 541101226 1.550000e-109 407.0
46 TraesCS2D01G357900 chr2B 94.737 209 11 0 960 1168 541101298 541101506 4.460000e-85 326.0
47 TraesCS2D01G357900 chr1D 97.105 449 13 0 3109 3557 276511574 276511126 0.000000e+00 758.0
48 TraesCS2D01G357900 chr1D 79.632 815 109 31 1 767 20655848 20655043 2.450000e-147 532.0
49 TraesCS2D01G357900 chr7B 81.413 807 101 28 1 764 599860222 599861022 8.500000e-172 614.0
50 TraesCS2D01G357900 chrUn 92.758 359 4 1 3400 3758 439908888 439909224 2.480000e-137 499.0
51 TraesCS2D01G357900 chr5A 78.977 528 106 5 14 540 697323489 697322966 5.690000e-94 355.0
52 TraesCS2D01G357900 chr5A 78.409 528 109 5 14 540 697098013 697097490 5.730000e-89 339.0
53 TraesCS2D01G357900 chr5A 78.409 528 109 5 14 540 697246187 697245664 5.730000e-89 339.0
54 TraesCS2D01G357900 chr5A 77.841 528 112 5 14 540 697164980 697164457 5.770000e-84 322.0
55 TraesCS2D01G357900 chr3B 82.039 412 62 4 96 495 568279666 568280077 1.590000e-89 340.0
56 TraesCS2D01G357900 chr3B 79.344 305 38 16 478 767 568280169 568280463 1.700000e-44 191.0
57 TraesCS2D01G357900 chr3B 90.278 72 1 3 486 551 568280118 568280189 6.370000e-14 89.8
58 TraesCS2D01G357900 chr2A 93.689 206 7 2 963 1168 602803263 602803462 2.090000e-78 303.0
59 TraesCS2D01G357900 chr2A 92.537 201 12 1 762 959 602803012 602803212 7.570000e-73 285.0
60 TraesCS2D01G357900 chr2A 76.111 540 105 14 14 533 663822525 663823060 1.270000e-65 261.0
61 TraesCS2D01G357900 chr2A 90.476 42 2 2 735 775 206299891 206299851 2.000000e-03 54.7
62 TraesCS2D01G357900 chr4A 81.778 225 21 2 351 555 478164016 478163792 2.210000e-38 171.0
63 TraesCS2D01G357900 chr6A 86.139 101 11 2 1048 1146 5291216 5291117 6.320000e-19 106.0
64 TraesCS2D01G357900 chr3A 96.875 32 1 0 735 766 644834666 644834697 2.000000e-03 54.7
65 TraesCS2D01G357900 chr1B 100.000 28 0 0 735 762 221282752 221282725 8.000000e-03 52.8
66 TraesCS2D01G357900 chr1B 100.000 28 0 0 735 762 221303674 221303647 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G357900 chr2D 459829690 459834309 4619 False 2942.000000 8532 100.00000 1 4620 3 chr2D.!!$F3 4619
1 TraesCS2D01G357900 chr2D 155546021 155549162 3141 True 2338.500000 3280 97.35200 1169 4620 2 chr2D.!!$R5 3451
2 TraesCS2D01G357900 chr2D 114802129 114805052 2923 False 1437.500000 2082 95.95400 1169 3758 2 chr2D.!!$F2 2589
3 TraesCS2D01G357900 chr2D 11085834 11086940 1106 True 789.000000 1380 92.49400 3553 4620 2 chr2D.!!$R4 1067
4 TraesCS2D01G357900 chr2D 97606105 97606692 587 False 697.000000 697 88.47400 3166 3758 1 chr2D.!!$F1 592
5 TraesCS2D01G357900 chr2D 38265886 38266686 800 True 508.000000 508 79.46500 1 764 1 chr2D.!!$R1 763
6 TraesCS2D01G357900 chr3D 595950623 595953694 3071 True 2399.500000 4032 98.09300 1169 3758 2 chr3D.!!$R6 2589
7 TraesCS2D01G357900 chr3D 114393410 114397631 4221 True 1602.250000 3546 98.00475 1168 4620 4 chr3D.!!$R5 3452
8 TraesCS2D01G357900 chr3D 406149283 406150141 858 True 1537.000000 1537 98.95200 3762 4620 1 chr3D.!!$R2 858
9 TraesCS2D01G357900 chr3D 66255837 66256695 858 False 1526.000000 1526 98.71900 3762 4620 1 chr3D.!!$F1 858
10 TraesCS2D01G357900 chr3D 537137692 537138299 607 True 409.000000 409 80.29600 208 762 1 chr3D.!!$R3 554
11 TraesCS2D01G357900 chr7D 510432692 510433884 1192 True 2054.000000 2054 97.73700 2365 3557 1 chr7D.!!$R1 1192
12 TraesCS2D01G357900 chr7D 370960703 370966230 5527 True 1597.000000 4017 98.28300 1169 4620 4 chr7D.!!$R2 3451
13 TraesCS2D01G357900 chr6D 81146668 81150542 3874 True 1521.250000 3831 98.10425 1169 4620 4 chr6D.!!$R2 3451
14 TraesCS2D01G357900 chr1A 1315709 1318040 2331 False 3777.000000 3777 95.83000 1169 3515 1 chr1A.!!$F1 2346
15 TraesCS2D01G357900 chr7A 100753662 100756028 2366 True 3705.000000 3705 94.82900 1168 3557 1 chr7A.!!$R1 2389
16 TraesCS2D01G357900 chr7A 652923893 652926002 2109 False 3129.000000 3129 93.48000 1442 3553 1 chr7A.!!$F2 2111
17 TraesCS2D01G357900 chr4D 414632013 414636101 4088 True 2482.500000 3585 96.57950 1169 4620 2 chr4D.!!$R1 3451
18 TraesCS2D01G357900 chr4D 469104915 469105710 795 False 1448.000000 1448 99.49800 3824 4620 1 chr4D.!!$F2 796
19 TraesCS2D01G357900 chr4D 349136333 349137122 789 False 586.000000 586 80.82200 2 769 1 chr4D.!!$F1 767
20 TraesCS2D01G357900 chr5D 58670144 58672899 2755 True 1444.000000 2106 97.53800 1168 3758 2 chr5D.!!$R1 2590
21 TraesCS2D01G357900 chr2B 541100284 541101506 1222 False 518.000000 821 92.93000 1 1168 3 chr2B.!!$F1 1167
22 TraesCS2D01G357900 chr1D 20655043 20655848 805 True 532.000000 532 79.63200 1 767 1 chr1D.!!$R1 766
23 TraesCS2D01G357900 chr7B 599860222 599861022 800 False 614.000000 614 81.41300 1 764 1 chr7B.!!$F1 763
24 TraesCS2D01G357900 chr5A 697322966 697323489 523 True 355.000000 355 78.97700 14 540 1 chr5A.!!$R4 526
25 TraesCS2D01G357900 chr5A 697097490 697098013 523 True 339.000000 339 78.40900 14 540 1 chr5A.!!$R1 526
26 TraesCS2D01G357900 chr5A 697245664 697246187 523 True 339.000000 339 78.40900 14 540 1 chr5A.!!$R3 526
27 TraesCS2D01G357900 chr5A 697164457 697164980 523 True 322.000000 322 77.84100 14 540 1 chr5A.!!$R2 526
28 TraesCS2D01G357900 chr3B 568279666 568280463 797 False 206.933333 340 83.88700 96 767 3 chr3B.!!$F1 671
29 TraesCS2D01G357900 chr2A 663822525 663823060 535 False 261.000000 261 76.11100 14 533 1 chr2A.!!$F1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 757 0.110599 TTGGACGCGCGTGTTTTATG 60.111 50.0 42.90 5.76 0.00 1.90 F
1163 1344 0.320374 TGGGCTTTGTCTCGTACCAG 59.680 55.0 0.00 0.00 0.00 4.00 F
1165 1346 0.320421 GGCTTTGTCTCGTACCAGCA 60.320 55.0 11.31 0.00 35.84 4.41 F
1166 1347 0.790814 GCTTTGTCTCGTACCAGCAC 59.209 55.0 0.00 0.00 34.78 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1434 1616 0.107410 GAGAGAGAGAGAGGGCACGA 60.107 60.000 0.0 0.0 0.00 4.35 R
2580 2867 4.965200 AGTCTCCTGTAGCTTGTTCTTT 57.035 40.909 0.0 0.0 0.00 2.52 R
3474 7607 0.105453 ATCATCTAGGGTGCCTCGGT 60.105 55.000 0.0 0.0 34.61 4.69 R
3734 8016 5.545063 TCTGGTTGTCATGAGTACTTTCA 57.455 39.130 0.0 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
306 308 1.202582 ACGTCCTCGAAGTTCATCTGG 59.797 52.381 3.32 0.00 40.62 3.86
374 389 3.627645 TCTCGAACGTCCTGAGACT 57.372 52.632 9.50 0.00 41.16 3.24
594 757 0.110599 TTGGACGCGCGTGTTTTATG 60.111 50.000 42.90 5.76 0.00 1.90
595 758 0.944788 TGGACGCGCGTGTTTTATGA 60.945 50.000 42.90 11.34 0.00 2.15
611 788 4.030452 GAGCGCGCCAAAACTGCT 62.030 61.111 30.33 5.17 38.89 4.24
618 795 2.726912 CCAAAACTGCTGCGCGTG 60.727 61.111 8.43 1.88 0.00 5.34
714 895 1.692148 CTCCGCGCGCTAAAACATGA 61.692 55.000 30.48 11.97 0.00 3.07
717 898 1.534028 CGCGCGCTAAAACATGATTT 58.466 45.000 30.48 2.25 0.00 2.17
722 903 2.481276 GCGCTAAAACATGATTTCCCCC 60.481 50.000 3.99 0.00 0.00 5.40
737 918 1.743391 CCCCCGCACACGTGATATA 59.257 57.895 25.01 0.00 37.70 0.86
740 921 2.416836 CCCCCGCACACGTGATATATAG 60.417 54.545 25.01 4.91 37.70 1.31
744 925 2.324860 GCACACGTGATATATAGCGCA 58.675 47.619 25.01 0.00 0.00 6.09
764 945 3.603532 CAGCTGTTGGAGATGCTCTTAA 58.396 45.455 5.25 0.00 29.56 1.85
765 946 3.373439 CAGCTGTTGGAGATGCTCTTAAC 59.627 47.826 5.25 0.00 29.56 2.01
766 947 3.008375 AGCTGTTGGAGATGCTCTTAACA 59.992 43.478 13.10 13.10 36.27 2.41
767 948 3.944015 GCTGTTGGAGATGCTCTTAACAT 59.056 43.478 13.71 0.00 37.14 2.71
768 949 4.034975 GCTGTTGGAGATGCTCTTAACATC 59.965 45.833 13.71 0.00 43.49 3.06
769 950 4.517285 TGTTGGAGATGCTCTTAACATCC 58.483 43.478 11.08 0.00 44.08 3.51
770 951 4.225942 TGTTGGAGATGCTCTTAACATCCT 59.774 41.667 11.08 0.00 44.08 3.24
771 952 5.189180 GTTGGAGATGCTCTTAACATCCTT 58.811 41.667 0.00 0.00 44.08 3.36
772 953 4.774124 TGGAGATGCTCTTAACATCCTTG 58.226 43.478 0.00 0.00 44.08 3.61
773 954 4.225942 TGGAGATGCTCTTAACATCCTTGT 59.774 41.667 0.00 0.00 44.08 3.16
774 955 4.574013 GGAGATGCTCTTAACATCCTTGTG 59.426 45.833 0.00 0.00 44.08 3.33
775 956 5.171339 AGATGCTCTTAACATCCTTGTGT 57.829 39.130 0.00 0.00 44.08 3.72
776 957 5.564550 AGATGCTCTTAACATCCTTGTGTT 58.435 37.500 0.00 0.00 44.08 3.32
777 958 6.006449 AGATGCTCTTAACATCCTTGTGTTT 58.994 36.000 0.00 0.00 44.08 2.83
778 959 5.689383 TGCTCTTAACATCCTTGTGTTTC 57.311 39.130 0.00 0.00 42.08 2.78
779 960 5.376625 TGCTCTTAACATCCTTGTGTTTCT 58.623 37.500 0.00 0.00 42.08 2.52
780 961 5.239306 TGCTCTTAACATCCTTGTGTTTCTG 59.761 40.000 0.00 0.00 42.08 3.02
781 962 5.239525 GCTCTTAACATCCTTGTGTTTCTGT 59.760 40.000 0.00 0.00 42.08 3.41
782 963 6.238759 GCTCTTAACATCCTTGTGTTTCTGTT 60.239 38.462 0.00 0.00 42.08 3.16
783 964 7.026631 TCTTAACATCCTTGTGTTTCTGTTG 57.973 36.000 0.00 0.00 42.08 3.33
784 965 4.654091 AACATCCTTGTGTTTCTGTTGG 57.346 40.909 0.00 0.00 39.15 3.77
785 966 2.958355 ACATCCTTGTGTTTCTGTTGGG 59.042 45.455 0.00 0.00 33.85 4.12
786 967 2.818751 TCCTTGTGTTTCTGTTGGGT 57.181 45.000 0.00 0.00 0.00 4.51
787 968 3.935818 TCCTTGTGTTTCTGTTGGGTA 57.064 42.857 0.00 0.00 0.00 3.69
788 969 3.815809 TCCTTGTGTTTCTGTTGGGTAG 58.184 45.455 0.00 0.00 0.00 3.18
789 970 2.884639 CCTTGTGTTTCTGTTGGGTAGG 59.115 50.000 0.00 0.00 0.00 3.18
790 971 3.434453 CCTTGTGTTTCTGTTGGGTAGGA 60.434 47.826 0.00 0.00 0.00 2.94
791 972 3.935818 TGTGTTTCTGTTGGGTAGGAA 57.064 42.857 0.00 0.00 0.00 3.36
792 973 4.237976 TGTGTTTCTGTTGGGTAGGAAA 57.762 40.909 0.00 0.00 0.00 3.13
793 974 4.601084 TGTGTTTCTGTTGGGTAGGAAAA 58.399 39.130 0.00 0.00 30.98 2.29
794 975 5.205056 TGTGTTTCTGTTGGGTAGGAAAAT 58.795 37.500 0.00 0.00 30.98 1.82
795 976 5.659079 TGTGTTTCTGTTGGGTAGGAAAATT 59.341 36.000 0.00 0.00 30.98 1.82
796 977 5.983118 GTGTTTCTGTTGGGTAGGAAAATTG 59.017 40.000 0.00 0.00 30.98 2.32
797 978 4.864704 TTCTGTTGGGTAGGAAAATTGC 57.135 40.909 0.00 0.00 0.00 3.56
798 979 3.838565 TCTGTTGGGTAGGAAAATTGCA 58.161 40.909 0.00 0.00 0.00 4.08
799 980 3.572255 TCTGTTGGGTAGGAAAATTGCAC 59.428 43.478 0.00 0.00 0.00 4.57
800 981 3.300388 TGTTGGGTAGGAAAATTGCACA 58.700 40.909 0.00 0.00 0.00 4.57
801 982 3.900601 TGTTGGGTAGGAAAATTGCACAT 59.099 39.130 0.00 0.00 0.00 3.21
802 983 4.021544 TGTTGGGTAGGAAAATTGCACATC 60.022 41.667 0.00 0.00 0.00 3.06
803 984 3.772387 TGGGTAGGAAAATTGCACATCA 58.228 40.909 0.00 0.00 0.00 3.07
804 985 4.352009 TGGGTAGGAAAATTGCACATCAT 58.648 39.130 0.00 0.00 0.00 2.45
805 986 4.776837 TGGGTAGGAAAATTGCACATCATT 59.223 37.500 0.00 0.00 0.00 2.57
806 987 5.105392 TGGGTAGGAAAATTGCACATCATTC 60.105 40.000 0.00 0.00 0.00 2.67
807 988 5.105392 GGGTAGGAAAATTGCACATCATTCA 60.105 40.000 0.00 0.00 0.00 2.57
808 989 5.807011 GGTAGGAAAATTGCACATCATTCAC 59.193 40.000 0.00 0.00 0.00 3.18
809 990 4.824289 AGGAAAATTGCACATCATTCACC 58.176 39.130 0.00 0.00 0.00 4.02
810 991 4.529377 AGGAAAATTGCACATCATTCACCT 59.471 37.500 0.00 0.00 0.00 4.00
811 992 5.716228 AGGAAAATTGCACATCATTCACCTA 59.284 36.000 0.00 0.00 0.00 3.08
812 993 6.381994 AGGAAAATTGCACATCATTCACCTAT 59.618 34.615 0.00 0.00 0.00 2.57
813 994 7.043565 GGAAAATTGCACATCATTCACCTATT 58.956 34.615 0.00 0.00 0.00 1.73
814 995 8.196771 GGAAAATTGCACATCATTCACCTATTA 58.803 33.333 0.00 0.00 0.00 0.98
815 996 8.931385 AAAATTGCACATCATTCACCTATTAC 57.069 30.769 0.00 0.00 0.00 1.89
816 997 7.643569 AATTGCACATCATTCACCTATTACA 57.356 32.000 0.00 0.00 0.00 2.41
817 998 6.682423 TTGCACATCATTCACCTATTACAG 57.318 37.500 0.00 0.00 0.00 2.74
833 1014 7.426929 CTATTACAGGATTGTGAAGGCATAC 57.573 40.000 0.00 0.00 38.23 2.39
834 1015 3.004752 ACAGGATTGTGAAGGCATACC 57.995 47.619 0.00 0.00 35.83 2.73
835 1016 2.301346 CAGGATTGTGAAGGCATACCC 58.699 52.381 0.00 0.00 36.11 3.69
836 1017 1.922447 AGGATTGTGAAGGCATACCCA 59.078 47.619 0.00 0.00 36.11 4.51
837 1018 2.311542 AGGATTGTGAAGGCATACCCAA 59.688 45.455 0.00 0.00 36.11 4.12
838 1019 2.689983 GGATTGTGAAGGCATACCCAAG 59.310 50.000 0.00 0.00 36.11 3.61
839 1020 3.620488 GATTGTGAAGGCATACCCAAGA 58.380 45.455 0.00 0.00 36.11 3.02
840 1021 3.737559 TTGTGAAGGCATACCCAAGAT 57.262 42.857 0.00 0.00 36.11 2.40
841 1022 3.003394 TGTGAAGGCATACCCAAGATG 57.997 47.619 0.00 0.00 36.11 2.90
842 1023 2.575735 TGTGAAGGCATACCCAAGATGA 59.424 45.455 0.00 0.00 36.11 2.92
843 1024 3.010027 TGTGAAGGCATACCCAAGATGAA 59.990 43.478 0.00 0.00 36.11 2.57
844 1025 3.378427 GTGAAGGCATACCCAAGATGAAC 59.622 47.826 0.00 0.00 36.11 3.18
845 1026 3.266772 TGAAGGCATACCCAAGATGAACT 59.733 43.478 0.00 0.00 36.11 3.01
846 1027 3.287867 AGGCATACCCAAGATGAACTG 57.712 47.619 0.00 0.00 36.11 3.16
847 1028 2.092212 AGGCATACCCAAGATGAACTGG 60.092 50.000 0.00 0.00 36.11 4.00
848 1029 2.301346 GCATACCCAAGATGAACTGGG 58.699 52.381 5.57 5.57 40.39 4.45
849 1030 2.357154 GCATACCCAAGATGAACTGGGT 60.357 50.000 16.58 16.58 45.29 4.51
850 1031 3.282021 CATACCCAAGATGAACTGGGTG 58.718 50.000 20.60 3.56 44.11 4.61
851 1032 1.149101 ACCCAAGATGAACTGGGTGT 58.851 50.000 11.96 0.00 43.38 4.16
852 1033 1.499007 ACCCAAGATGAACTGGGTGTT 59.501 47.619 11.96 0.00 43.38 3.32
853 1034 2.091333 ACCCAAGATGAACTGGGTGTTT 60.091 45.455 11.96 0.00 43.38 2.83
854 1035 2.965147 CCCAAGATGAACTGGGTGTTTT 59.035 45.455 0.00 0.00 38.01 2.43
855 1036 3.387699 CCCAAGATGAACTGGGTGTTTTT 59.612 43.478 0.00 0.00 38.01 1.94
883 1064 8.330466 TGTAGTCCTGTTTTACATTGTATTGG 57.670 34.615 0.00 0.00 0.00 3.16
884 1065 7.940137 TGTAGTCCTGTTTTACATTGTATTGGT 59.060 33.333 0.00 0.00 0.00 3.67
885 1066 9.439500 GTAGTCCTGTTTTACATTGTATTGGTA 57.561 33.333 0.00 0.00 0.00 3.25
918 1099 8.825667 TTATTTCCTTGAAATTGCCACTTTAC 57.174 30.769 7.31 0.00 41.64 2.01
919 1100 4.864704 TCCTTGAAATTGCCACTTTACC 57.135 40.909 0.00 0.00 0.00 2.85
920 1101 4.479158 TCCTTGAAATTGCCACTTTACCT 58.521 39.130 0.00 0.00 0.00 3.08
921 1102 5.636123 TCCTTGAAATTGCCACTTTACCTA 58.364 37.500 0.00 0.00 0.00 3.08
922 1103 6.252995 TCCTTGAAATTGCCACTTTACCTAT 58.747 36.000 0.00 0.00 0.00 2.57
923 1104 7.406916 TCCTTGAAATTGCCACTTTACCTATA 58.593 34.615 0.00 0.00 0.00 1.31
924 1105 8.058847 TCCTTGAAATTGCCACTTTACCTATAT 58.941 33.333 0.00 0.00 0.00 0.86
925 1106 8.137437 CCTTGAAATTGCCACTTTACCTATATG 58.863 37.037 0.00 0.00 0.00 1.78
926 1107 7.581213 TGAAATTGCCACTTTACCTATATGG 57.419 36.000 0.00 0.00 42.93 2.74
936 1117 9.220767 CCACTTTACCTATATGGCTAATCTTTC 57.779 37.037 0.00 0.00 40.22 2.62
947 1128 7.730364 ATGGCTAATCTTTCTTATAACACCG 57.270 36.000 0.00 0.00 0.00 4.94
948 1129 6.053005 TGGCTAATCTTTCTTATAACACCGG 58.947 40.000 0.00 0.00 0.00 5.28
949 1130 6.126997 TGGCTAATCTTTCTTATAACACCGGA 60.127 38.462 9.46 0.00 0.00 5.14
950 1131 6.424207 GGCTAATCTTTCTTATAACACCGGAG 59.576 42.308 9.46 1.26 0.00 4.63
951 1132 7.208080 GCTAATCTTTCTTATAACACCGGAGA 58.792 38.462 9.46 0.00 0.00 3.71
952 1133 7.169476 GCTAATCTTTCTTATAACACCGGAGAC 59.831 40.741 9.46 0.00 0.00 3.36
953 1134 5.988310 TCTTTCTTATAACACCGGAGACA 57.012 39.130 9.46 0.00 0.00 3.41
954 1135 6.540438 TCTTTCTTATAACACCGGAGACAT 57.460 37.500 9.46 1.52 0.00 3.06
955 1136 7.649533 TCTTTCTTATAACACCGGAGACATA 57.350 36.000 9.46 0.45 0.00 2.29
956 1137 8.246430 TCTTTCTTATAACACCGGAGACATAT 57.754 34.615 9.46 5.22 0.00 1.78
957 1138 8.701895 TCTTTCTTATAACACCGGAGACATATT 58.298 33.333 9.46 0.00 0.00 1.28
958 1139 9.326413 CTTTCTTATAACACCGGAGACATATTT 57.674 33.333 9.46 0.00 0.00 1.40
959 1140 8.882415 TTCTTATAACACCGGAGACATATTTC 57.118 34.615 9.46 0.00 0.00 2.17
960 1141 7.439381 TCTTATAACACCGGAGACATATTTCC 58.561 38.462 9.46 0.00 0.00 3.13
961 1142 5.888982 ATAACACCGGAGACATATTTCCT 57.111 39.130 9.46 0.00 0.00 3.36
962 1143 4.569719 AACACCGGAGACATATTTCCTT 57.430 40.909 9.46 0.00 0.00 3.36
963 1144 4.569719 ACACCGGAGACATATTTCCTTT 57.430 40.909 9.46 0.00 0.00 3.11
964 1145 5.687166 ACACCGGAGACATATTTCCTTTA 57.313 39.130 9.46 0.00 0.00 1.85
965 1146 5.425630 ACACCGGAGACATATTTCCTTTAC 58.574 41.667 9.46 0.00 0.00 2.01
966 1147 5.046159 ACACCGGAGACATATTTCCTTTACA 60.046 40.000 9.46 0.00 0.00 2.41
967 1148 5.878116 CACCGGAGACATATTTCCTTTACAA 59.122 40.000 9.46 0.00 0.00 2.41
968 1149 6.037172 CACCGGAGACATATTTCCTTTACAAG 59.963 42.308 9.46 0.00 0.00 3.16
969 1150 6.113411 CCGGAGACATATTTCCTTTACAAGT 58.887 40.000 0.00 0.00 0.00 3.16
970 1151 6.037172 CCGGAGACATATTTCCTTTACAAGTG 59.963 42.308 0.00 0.00 0.00 3.16
971 1152 6.456988 CGGAGACATATTTCCTTTACAAGTGC 60.457 42.308 0.00 0.00 0.00 4.40
972 1153 6.374333 GGAGACATATTTCCTTTACAAGTGCA 59.626 38.462 0.00 0.00 0.00 4.57
973 1154 7.094377 GGAGACATATTTCCTTTACAAGTGCAA 60.094 37.037 0.00 0.00 0.00 4.08
974 1155 8.177119 AGACATATTTCCTTTACAAGTGCAAA 57.823 30.769 0.00 0.00 0.00 3.68
975 1156 8.082242 AGACATATTTCCTTTACAAGTGCAAAC 58.918 33.333 0.00 0.00 0.00 2.93
976 1157 7.951591 ACATATTTCCTTTACAAGTGCAAACT 58.048 30.769 0.00 0.00 0.00 2.66
977 1158 9.073475 ACATATTTCCTTTACAAGTGCAAACTA 57.927 29.630 0.00 0.00 0.00 2.24
989 1170 3.020102 CAAACTATGCAAGCCACGC 57.980 52.632 0.00 0.00 0.00 5.34
990 1171 0.523072 CAAACTATGCAAGCCACGCT 59.477 50.000 0.00 0.00 42.56 5.07
1001 1182 2.888834 AGCCACGCTTTTCAAAATGT 57.111 40.000 0.00 0.00 33.89 2.71
1003 1184 4.519540 AGCCACGCTTTTCAAAATGTAT 57.480 36.364 0.00 0.00 33.89 2.29
1004 1185 5.637006 AGCCACGCTTTTCAAAATGTATA 57.363 34.783 0.00 0.00 33.89 1.47
1005 1186 6.207691 AGCCACGCTTTTCAAAATGTATAT 57.792 33.333 0.00 0.00 33.89 0.86
1006 1187 6.035843 AGCCACGCTTTTCAAAATGTATATG 58.964 36.000 0.00 0.00 33.89 1.78
1007 1188 5.804979 GCCACGCTTTTCAAAATGTATATGT 59.195 36.000 0.00 0.00 0.00 2.29
1008 1189 6.020678 GCCACGCTTTTCAAAATGTATATGTC 60.021 38.462 0.00 0.00 0.00 3.06
1009 1190 7.250569 CCACGCTTTTCAAAATGTATATGTCT 58.749 34.615 0.00 0.00 0.00 3.41
1010 1191 7.429340 CCACGCTTTTCAAAATGTATATGTCTC 59.571 37.037 0.00 0.00 0.00 3.36
1011 1192 8.177663 CACGCTTTTCAAAATGTATATGTCTCT 58.822 33.333 0.00 0.00 0.00 3.10
1012 1193 8.730680 ACGCTTTTCAAAATGTATATGTCTCTT 58.269 29.630 0.00 0.00 0.00 2.85
1013 1194 9.003112 CGCTTTTCAAAATGTATATGTCTCTTG 57.997 33.333 0.00 0.00 0.00 3.02
1014 1195 9.294030 GCTTTTCAAAATGTATATGTCTCTTGG 57.706 33.333 0.00 0.00 0.00 3.61
1015 1196 9.294030 CTTTTCAAAATGTATATGTCTCTTGGC 57.706 33.333 0.00 0.00 0.00 4.52
1016 1197 7.936496 TTCAAAATGTATATGTCTCTTGGCA 57.064 32.000 0.00 0.00 0.00 4.92
1017 1198 7.936496 TCAAAATGTATATGTCTCTTGGCAA 57.064 32.000 0.00 0.00 0.00 4.52
1018 1199 7.988737 TCAAAATGTATATGTCTCTTGGCAAG 58.011 34.615 21.17 21.17 0.00 4.01
1019 1200 6.949352 AAATGTATATGTCTCTTGGCAAGG 57.051 37.500 25.92 16.67 0.00 3.61
1020 1201 5.636903 ATGTATATGTCTCTTGGCAAGGT 57.363 39.130 25.92 10.45 0.00 3.50
1021 1202 6.747414 ATGTATATGTCTCTTGGCAAGGTA 57.253 37.500 25.92 12.30 0.00 3.08
1022 1203 6.747414 TGTATATGTCTCTTGGCAAGGTAT 57.253 37.500 25.92 16.47 0.00 2.73
1023 1204 7.849322 TGTATATGTCTCTTGGCAAGGTATA 57.151 36.000 25.92 17.82 0.00 1.47
1024 1205 7.667557 TGTATATGTCTCTTGGCAAGGTATAC 58.332 38.462 25.92 23.75 0.00 1.47
1025 1206 6.747414 ATATGTCTCTTGGCAAGGTATACA 57.253 37.500 25.92 22.01 0.00 2.29
1026 1207 5.636903 ATGTCTCTTGGCAAGGTATACAT 57.363 39.130 25.92 22.99 0.00 2.29
1027 1208 5.435686 TGTCTCTTGGCAAGGTATACATT 57.564 39.130 25.92 0.13 0.00 2.71
1028 1209 5.815581 TGTCTCTTGGCAAGGTATACATTT 58.184 37.500 25.92 0.00 0.00 2.32
1029 1210 6.245408 TGTCTCTTGGCAAGGTATACATTTT 58.755 36.000 25.92 0.00 0.00 1.82
1030 1211 7.398829 TGTCTCTTGGCAAGGTATACATTTTA 58.601 34.615 25.92 2.23 0.00 1.52
1031 1212 7.552687 TGTCTCTTGGCAAGGTATACATTTTAG 59.447 37.037 25.92 11.81 0.00 1.85
1032 1213 7.553044 GTCTCTTGGCAAGGTATACATTTTAGT 59.447 37.037 25.92 0.00 0.00 2.24
1033 1214 8.107095 TCTCTTGGCAAGGTATACATTTTAGTT 58.893 33.333 25.92 0.00 0.00 2.24
1034 1215 8.644374 TCTTGGCAAGGTATACATTTTAGTTT 57.356 30.769 25.92 0.00 0.00 2.66
1035 1216 9.084533 TCTTGGCAAGGTATACATTTTAGTTTT 57.915 29.630 25.92 0.00 0.00 2.43
1038 1219 9.742144 TGGCAAGGTATACATTTTAGTTTTAGA 57.258 29.630 5.01 0.00 0.00 2.10
1039 1220 9.999009 GGCAAGGTATACATTTTAGTTTTAGAC 57.001 33.333 5.01 0.00 0.00 2.59
1069 1250 9.543783 AAAGTAAGGCTTATTAGAATAGGAACG 57.456 33.333 10.65 0.00 36.17 3.95
1070 1251 8.474710 AGTAAGGCTTATTAGAATAGGAACGA 57.525 34.615 10.65 0.00 0.00 3.85
1071 1252 9.091220 AGTAAGGCTTATTAGAATAGGAACGAT 57.909 33.333 10.65 0.00 0.00 3.73
1072 1253 9.356433 GTAAGGCTTATTAGAATAGGAACGATC 57.644 37.037 10.65 0.00 0.00 3.69
1073 1254 7.540474 AGGCTTATTAGAATAGGAACGATCA 57.460 36.000 0.00 0.00 0.00 2.92
1074 1255 7.963532 AGGCTTATTAGAATAGGAACGATCAA 58.036 34.615 0.00 0.00 0.00 2.57
1075 1256 8.598041 AGGCTTATTAGAATAGGAACGATCAAT 58.402 33.333 0.00 0.00 0.00 2.57
1076 1257 8.874816 GGCTTATTAGAATAGGAACGATCAATC 58.125 37.037 0.00 0.00 0.00 2.67
1077 1258 8.874816 GCTTATTAGAATAGGAACGATCAATCC 58.125 37.037 5.78 5.78 35.88 3.01
1078 1259 9.372369 CTTATTAGAATAGGAACGATCAATCCC 57.628 37.037 9.58 0.00 36.31 3.85
1079 1260 4.625607 AGAATAGGAACGATCAATCCCC 57.374 45.455 9.58 0.00 36.31 4.81
1080 1261 4.235372 AGAATAGGAACGATCAATCCCCT 58.765 43.478 9.58 3.05 36.31 4.79
1081 1262 4.040952 AGAATAGGAACGATCAATCCCCTG 59.959 45.833 9.58 0.00 36.31 4.45
1082 1263 1.879575 AGGAACGATCAATCCCCTGA 58.120 50.000 9.58 0.00 36.31 3.86
1083 1264 2.196595 AGGAACGATCAATCCCCTGAA 58.803 47.619 9.58 0.00 36.31 3.02
1084 1265 2.780010 AGGAACGATCAATCCCCTGAAT 59.220 45.455 9.58 0.00 36.31 2.57
1085 1266 3.973973 AGGAACGATCAATCCCCTGAATA 59.026 43.478 9.58 0.00 36.31 1.75
1086 1267 4.599241 AGGAACGATCAATCCCCTGAATAT 59.401 41.667 9.58 0.00 36.31 1.28
1087 1268 4.697352 GGAACGATCAATCCCCTGAATATG 59.303 45.833 2.92 0.00 0.00 1.78
1088 1269 4.982241 ACGATCAATCCCCTGAATATGT 57.018 40.909 0.00 0.00 0.00 2.29
1089 1270 4.645535 ACGATCAATCCCCTGAATATGTG 58.354 43.478 0.00 0.00 0.00 3.21
1090 1271 4.347876 ACGATCAATCCCCTGAATATGTGA 59.652 41.667 0.00 0.00 0.00 3.58
1091 1272 5.013495 ACGATCAATCCCCTGAATATGTGAT 59.987 40.000 0.00 0.00 0.00 3.06
1092 1273 5.942236 CGATCAATCCCCTGAATATGTGATT 59.058 40.000 0.00 0.00 0.00 2.57
1093 1274 6.128090 CGATCAATCCCCTGAATATGTGATTG 60.128 42.308 0.00 0.00 40.06 2.67
1094 1275 4.828939 TCAATCCCCTGAATATGTGATTGC 59.171 41.667 0.00 0.00 39.10 3.56
1095 1276 3.949586 TCCCCTGAATATGTGATTGCA 57.050 42.857 0.00 0.00 0.00 4.08
1096 1277 4.248174 TCCCCTGAATATGTGATTGCAA 57.752 40.909 0.00 0.00 0.00 4.08
1097 1278 3.953612 TCCCCTGAATATGTGATTGCAAC 59.046 43.478 0.00 0.00 0.00 4.17
1098 1279 3.700539 CCCCTGAATATGTGATTGCAACA 59.299 43.478 0.00 0.00 0.00 3.33
1099 1280 4.202080 CCCCTGAATATGTGATTGCAACAG 60.202 45.833 0.00 0.73 0.00 3.16
1100 1281 4.641541 CCCTGAATATGTGATTGCAACAGA 59.358 41.667 0.00 0.99 0.00 3.41
1101 1282 5.220989 CCCTGAATATGTGATTGCAACAGAG 60.221 44.000 0.00 0.00 0.00 3.35
1102 1283 5.587443 CCTGAATATGTGATTGCAACAGAGA 59.413 40.000 0.00 0.00 0.00 3.10
1103 1284 6.094464 CCTGAATATGTGATTGCAACAGAGAA 59.906 38.462 0.00 0.00 0.00 2.87
1104 1285 7.080353 TGAATATGTGATTGCAACAGAGAAG 57.920 36.000 0.00 0.00 0.00 2.85
1105 1286 6.656270 TGAATATGTGATTGCAACAGAGAAGT 59.344 34.615 0.00 0.00 0.00 3.01
1106 1287 6.674694 ATATGTGATTGCAACAGAGAAGTC 57.325 37.500 0.00 0.00 0.00 3.01
1107 1288 3.141398 TGTGATTGCAACAGAGAAGTCC 58.859 45.455 0.00 0.00 0.00 3.85
1108 1289 3.141398 GTGATTGCAACAGAGAAGTCCA 58.859 45.455 0.00 0.00 0.00 4.02
1109 1290 3.565482 GTGATTGCAACAGAGAAGTCCAA 59.435 43.478 0.00 0.00 0.00 3.53
1110 1291 3.817084 TGATTGCAACAGAGAAGTCCAAG 59.183 43.478 0.00 0.00 0.00 3.61
1111 1292 3.558931 TTGCAACAGAGAAGTCCAAGA 57.441 42.857 0.00 0.00 0.00 3.02
1112 1293 3.558931 TGCAACAGAGAAGTCCAAGAA 57.441 42.857 0.00 0.00 0.00 2.52
1113 1294 3.884895 TGCAACAGAGAAGTCCAAGAAA 58.115 40.909 0.00 0.00 0.00 2.52
1114 1295 3.627577 TGCAACAGAGAAGTCCAAGAAAC 59.372 43.478 0.00 0.00 0.00 2.78
1115 1296 3.879892 GCAACAGAGAAGTCCAAGAAACT 59.120 43.478 0.00 0.00 0.00 2.66
1116 1297 4.024472 GCAACAGAGAAGTCCAAGAAACTC 60.024 45.833 0.00 0.00 0.00 3.01
1117 1298 5.118990 CAACAGAGAAGTCCAAGAAACTCA 58.881 41.667 0.00 0.00 0.00 3.41
1118 1299 5.359194 ACAGAGAAGTCCAAGAAACTCAA 57.641 39.130 0.00 0.00 0.00 3.02
1119 1300 5.745227 ACAGAGAAGTCCAAGAAACTCAAA 58.255 37.500 0.00 0.00 0.00 2.69
1120 1301 5.819901 ACAGAGAAGTCCAAGAAACTCAAAG 59.180 40.000 0.00 0.00 0.00 2.77
1121 1302 6.051717 CAGAGAAGTCCAAGAAACTCAAAGA 58.948 40.000 0.00 0.00 0.00 2.52
1122 1303 6.018343 CAGAGAAGTCCAAGAAACTCAAAGAC 60.018 42.308 0.00 0.00 0.00 3.01
1123 1304 5.995446 AGAAGTCCAAGAAACTCAAAGACT 58.005 37.500 0.00 0.00 34.71 3.24
1124 1305 5.819901 AGAAGTCCAAGAAACTCAAAGACTG 59.180 40.000 0.00 0.00 33.60 3.51
1125 1306 5.104259 AGTCCAAGAAACTCAAAGACTGT 57.896 39.130 0.00 0.00 32.16 3.55
1126 1307 5.119694 AGTCCAAGAAACTCAAAGACTGTC 58.880 41.667 0.00 0.00 32.16 3.51
1127 1308 4.876107 GTCCAAGAAACTCAAAGACTGTCA 59.124 41.667 10.88 0.00 0.00 3.58
1128 1309 4.876107 TCCAAGAAACTCAAAGACTGTCAC 59.124 41.667 10.88 0.00 0.00 3.67
1129 1310 4.878397 CCAAGAAACTCAAAGACTGTCACT 59.122 41.667 10.88 0.00 0.00 3.41
1130 1311 5.220739 CCAAGAAACTCAAAGACTGTCACTG 60.221 44.000 10.88 6.68 0.00 3.66
1131 1312 5.344743 AGAAACTCAAAGACTGTCACTGA 57.655 39.130 10.88 10.53 0.00 3.41
1132 1313 5.355596 AGAAACTCAAAGACTGTCACTGAG 58.644 41.667 25.38 25.38 39.53 3.35
1133 1314 3.742433 ACTCAAAGACTGTCACTGAGG 57.258 47.619 28.08 17.43 38.25 3.86
1134 1315 2.224161 ACTCAAAGACTGTCACTGAGGC 60.224 50.000 28.08 0.00 38.25 4.70
1135 1316 2.036992 CTCAAAGACTGTCACTGAGGCT 59.963 50.000 22.00 0.00 31.77 4.58
1136 1317 3.230976 TCAAAGACTGTCACTGAGGCTA 58.769 45.455 10.88 0.00 0.00 3.93
1137 1318 3.641436 TCAAAGACTGTCACTGAGGCTAA 59.359 43.478 10.88 0.00 0.00 3.09
1138 1319 3.951775 AAGACTGTCACTGAGGCTAAG 57.048 47.619 10.88 0.00 0.00 2.18
1139 1320 3.162147 AGACTGTCACTGAGGCTAAGA 57.838 47.619 5.69 0.00 0.00 2.10
1140 1321 3.501349 AGACTGTCACTGAGGCTAAGAA 58.499 45.455 5.69 0.00 0.00 2.52
1141 1322 3.509575 AGACTGTCACTGAGGCTAAGAAG 59.490 47.826 5.69 0.00 0.00 2.85
1142 1323 3.501349 ACTGTCACTGAGGCTAAGAAGA 58.499 45.455 5.69 0.06 0.00 2.87
1143 1324 3.898123 ACTGTCACTGAGGCTAAGAAGAA 59.102 43.478 5.69 0.00 0.00 2.52
1144 1325 4.530161 ACTGTCACTGAGGCTAAGAAGAAT 59.470 41.667 5.69 0.00 0.00 2.40
1145 1326 4.825422 TGTCACTGAGGCTAAGAAGAATG 58.175 43.478 5.69 0.00 0.00 2.67
1146 1327 4.187694 GTCACTGAGGCTAAGAAGAATGG 58.812 47.826 5.69 0.00 0.00 3.16
1147 1328 3.198635 TCACTGAGGCTAAGAAGAATGGG 59.801 47.826 5.69 0.00 0.00 4.00
1148 1329 2.092699 ACTGAGGCTAAGAAGAATGGGC 60.093 50.000 5.69 0.00 0.00 5.36
1149 1330 2.172293 CTGAGGCTAAGAAGAATGGGCT 59.828 50.000 0.00 0.00 35.55 5.19
1150 1331 2.578021 TGAGGCTAAGAAGAATGGGCTT 59.422 45.455 0.00 0.00 33.07 4.35
1151 1332 3.010584 TGAGGCTAAGAAGAATGGGCTTT 59.989 43.478 0.00 0.00 33.07 3.51
1152 1333 3.359950 AGGCTAAGAAGAATGGGCTTTG 58.640 45.455 0.00 0.00 0.00 2.77
1153 1334 3.092301 GGCTAAGAAGAATGGGCTTTGT 58.908 45.455 0.00 0.00 0.00 2.83
1154 1335 3.129462 GGCTAAGAAGAATGGGCTTTGTC 59.871 47.826 0.00 0.00 0.00 3.18
1155 1336 4.013050 GCTAAGAAGAATGGGCTTTGTCT 58.987 43.478 0.00 0.00 0.00 3.41
1156 1337 4.095632 GCTAAGAAGAATGGGCTTTGTCTC 59.904 45.833 0.00 0.00 0.00 3.36
1157 1338 2.704572 AGAAGAATGGGCTTTGTCTCG 58.295 47.619 0.00 0.00 0.00 4.04
1158 1339 2.039084 AGAAGAATGGGCTTTGTCTCGT 59.961 45.455 0.00 0.00 0.00 4.18
1159 1340 3.260884 AGAAGAATGGGCTTTGTCTCGTA 59.739 43.478 0.00 0.00 0.00 3.43
1160 1341 2.973945 AGAATGGGCTTTGTCTCGTAC 58.026 47.619 0.00 0.00 0.00 3.67
1161 1342 2.007608 GAATGGGCTTTGTCTCGTACC 58.992 52.381 0.00 0.00 0.00 3.34
1162 1343 0.981183 ATGGGCTTTGTCTCGTACCA 59.019 50.000 0.00 0.00 0.00 3.25
1163 1344 0.320374 TGGGCTTTGTCTCGTACCAG 59.680 55.000 0.00 0.00 0.00 4.00
1164 1345 1.019805 GGGCTTTGTCTCGTACCAGC 61.020 60.000 0.00 0.00 34.18 4.85
1165 1346 0.320421 GGCTTTGTCTCGTACCAGCA 60.320 55.000 11.31 0.00 35.84 4.41
1166 1347 0.790814 GCTTTGTCTCGTACCAGCAC 59.209 55.000 0.00 0.00 34.78 4.40
1240 1421 3.880490 ACCAAGTCGTTAATCTGTTGCAA 59.120 39.130 0.00 0.00 0.00 4.08
1434 1616 2.898738 CTCGCCAGACAGATGCCT 59.101 61.111 0.00 0.00 0.00 4.75
1966 2175 6.765512 TCACTGTTCATTGTTCATGTTCACTA 59.234 34.615 0.00 0.00 34.06 2.74
2580 2867 4.084011 TGTCCACAATCTCACATCACAA 57.916 40.909 0.00 0.00 0.00 3.33
3474 7607 1.378124 TATCGTGGATGCCGTCGACA 61.378 55.000 17.16 0.00 35.50 4.35
3718 8000 9.778993 CATGACAACCAGAATAAAGATGTTTAG 57.221 33.333 1.27 0.00 31.56 1.85
3719 8001 9.739276 ATGACAACCAGAATAAAGATGTTTAGA 57.261 29.630 1.27 0.00 31.56 2.10
3720 8002 9.567776 TGACAACCAGAATAAAGATGTTTAGAA 57.432 29.630 1.27 0.00 31.56 2.10
3721 8003 9.827411 GACAACCAGAATAAAGATGTTTAGAAC 57.173 33.333 1.27 0.00 31.56 3.01
3722 8004 9.349713 ACAACCAGAATAAAGATGTTTAGAACA 57.650 29.630 1.27 0.00 46.94 3.18
3756 8038 5.545063 TGAAAGTACTCATGACAACCAGA 57.455 39.130 0.00 0.00 0.00 3.86
3757 8039 5.924356 TGAAAGTACTCATGACAACCAGAA 58.076 37.500 0.00 0.00 0.00 3.02
3758 8040 6.533730 TGAAAGTACTCATGACAACCAGAAT 58.466 36.000 0.00 0.00 0.00 2.40
3759 8041 7.676004 TGAAAGTACTCATGACAACCAGAATA 58.324 34.615 0.00 0.00 0.00 1.75
3760 8042 8.154203 TGAAAGTACTCATGACAACCAGAATAA 58.846 33.333 0.00 0.00 0.00 1.40
3767 8049 7.667219 ACTCATGACAACCAGAATAAAGATGTT 59.333 33.333 0.00 0.00 0.00 2.71
3769 8051 9.513906 TCATGACAACCAGAATAAAGATGTTTA 57.486 29.630 0.00 0.00 32.60 2.01
3995 8447 1.200760 TGGACCAGCACCAGCAGTAT 61.201 55.000 0.00 0.00 45.49 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.753434 CTGGGAGCTGCGTCGACT 61.753 66.667 14.70 0.00 0.00 4.18
274 276 2.172483 GAGGACGTGTGGACATGCCT 62.172 60.000 12.15 12.15 39.97 4.75
306 308 2.182030 CTCTCGAGGCCACGTTCC 59.818 66.667 22.14 0.00 34.70 3.62
576 739 0.944788 TCATAAAACACGCGCGTCCA 60.945 50.000 35.61 16.43 0.00 4.02
594 757 4.030452 AGCAGTTTTGGCGCGCTC 62.030 61.111 32.29 21.22 36.08 5.03
595 758 4.332637 CAGCAGTTTTGGCGCGCT 62.333 61.111 32.29 6.78 36.08 5.92
722 903 1.911464 CGCTATATATCACGTGTGCGG 59.089 52.381 16.51 2.28 43.45 5.69
730 911 3.369147 CCAACAGCTGCGCTATATATCAC 59.631 47.826 15.27 0.00 36.40 3.06
731 912 3.258123 TCCAACAGCTGCGCTATATATCA 59.742 43.478 15.27 0.00 36.40 2.15
737 918 0.467384 ATCTCCAACAGCTGCGCTAT 59.533 50.000 15.27 0.00 36.40 2.97
740 921 2.789917 CATCTCCAACAGCTGCGC 59.210 61.111 15.27 0.00 0.00 6.09
756 937 5.239306 CAGAAACACAAGGATGTTAAGAGCA 59.761 40.000 0.00 0.00 42.01 4.26
764 945 2.958355 CCCAACAGAAACACAAGGATGT 59.042 45.455 0.00 0.00 41.61 3.06
765 946 2.958355 ACCCAACAGAAACACAAGGATG 59.042 45.455 0.00 0.00 0.00 3.51
766 947 3.312736 ACCCAACAGAAACACAAGGAT 57.687 42.857 0.00 0.00 0.00 3.24
767 948 2.818751 ACCCAACAGAAACACAAGGA 57.181 45.000 0.00 0.00 0.00 3.36
768 949 2.884639 CCTACCCAACAGAAACACAAGG 59.115 50.000 0.00 0.00 0.00 3.61
769 950 3.815809 TCCTACCCAACAGAAACACAAG 58.184 45.455 0.00 0.00 0.00 3.16
770 951 3.935818 TCCTACCCAACAGAAACACAA 57.064 42.857 0.00 0.00 0.00 3.33
771 952 3.935818 TTCCTACCCAACAGAAACACA 57.064 42.857 0.00 0.00 0.00 3.72
772 953 5.784578 ATTTTCCTACCCAACAGAAACAC 57.215 39.130 0.00 0.00 0.00 3.32
773 954 5.452636 GCAATTTTCCTACCCAACAGAAACA 60.453 40.000 0.00 0.00 0.00 2.83
774 955 4.988540 GCAATTTTCCTACCCAACAGAAAC 59.011 41.667 0.00 0.00 0.00 2.78
775 956 4.651503 TGCAATTTTCCTACCCAACAGAAA 59.348 37.500 0.00 0.00 0.00 2.52
776 957 4.038642 GTGCAATTTTCCTACCCAACAGAA 59.961 41.667 0.00 0.00 0.00 3.02
777 958 3.572255 GTGCAATTTTCCTACCCAACAGA 59.428 43.478 0.00 0.00 0.00 3.41
778 959 3.320541 TGTGCAATTTTCCTACCCAACAG 59.679 43.478 0.00 0.00 0.00 3.16
779 960 3.300388 TGTGCAATTTTCCTACCCAACA 58.700 40.909 0.00 0.00 0.00 3.33
780 961 4.021544 TGATGTGCAATTTTCCTACCCAAC 60.022 41.667 0.00 0.00 0.00 3.77
781 962 4.155709 TGATGTGCAATTTTCCTACCCAA 58.844 39.130 0.00 0.00 0.00 4.12
782 963 3.772387 TGATGTGCAATTTTCCTACCCA 58.228 40.909 0.00 0.00 0.00 4.51
783 964 5.105392 TGAATGATGTGCAATTTTCCTACCC 60.105 40.000 0.00 0.00 0.00 3.69
784 965 5.807011 GTGAATGATGTGCAATTTTCCTACC 59.193 40.000 0.00 0.00 0.00 3.18
785 966 5.807011 GGTGAATGATGTGCAATTTTCCTAC 59.193 40.000 0.00 0.00 0.00 3.18
786 967 5.716228 AGGTGAATGATGTGCAATTTTCCTA 59.284 36.000 0.00 0.00 0.00 2.94
787 968 4.529377 AGGTGAATGATGTGCAATTTTCCT 59.471 37.500 0.00 0.00 0.00 3.36
788 969 4.824289 AGGTGAATGATGTGCAATTTTCC 58.176 39.130 0.00 0.00 0.00 3.13
789 970 9.023967 GTAATAGGTGAATGATGTGCAATTTTC 57.976 33.333 0.00 0.00 0.00 2.29
790 971 8.530311 TGTAATAGGTGAATGATGTGCAATTTT 58.470 29.630 0.00 0.00 0.00 1.82
791 972 8.065473 TGTAATAGGTGAATGATGTGCAATTT 57.935 30.769 0.00 0.00 0.00 1.82
792 973 7.201848 CCTGTAATAGGTGAATGATGTGCAATT 60.202 37.037 0.00 0.00 42.00 2.32
793 974 6.263842 CCTGTAATAGGTGAATGATGTGCAAT 59.736 38.462 0.00 0.00 42.00 3.56
794 975 5.589855 CCTGTAATAGGTGAATGATGTGCAA 59.410 40.000 0.00 0.00 42.00 4.08
795 976 5.125356 CCTGTAATAGGTGAATGATGTGCA 58.875 41.667 0.00 0.00 42.00 4.57
796 977 5.679734 CCTGTAATAGGTGAATGATGTGC 57.320 43.478 0.00 0.00 42.00 4.57
809 990 6.428159 GGTATGCCTTCACAATCCTGTAATAG 59.572 42.308 0.00 0.00 33.22 1.73
810 991 6.296026 GGTATGCCTTCACAATCCTGTAATA 58.704 40.000 0.00 0.00 33.22 0.98
811 992 5.133221 GGTATGCCTTCACAATCCTGTAAT 58.867 41.667 0.00 0.00 33.22 1.89
812 993 4.523083 GGTATGCCTTCACAATCCTGTAA 58.477 43.478 0.00 0.00 33.22 2.41
813 994 3.118038 GGGTATGCCTTCACAATCCTGTA 60.118 47.826 0.00 0.00 32.26 2.74
814 995 2.357154 GGGTATGCCTTCACAATCCTGT 60.357 50.000 0.00 0.00 33.22 4.00
815 996 2.301346 GGGTATGCCTTCACAATCCTG 58.699 52.381 0.00 0.00 34.45 3.86
816 997 1.922447 TGGGTATGCCTTCACAATCCT 59.078 47.619 0.00 0.00 34.45 3.24
817 998 2.435372 TGGGTATGCCTTCACAATCC 57.565 50.000 0.00 0.00 34.45 3.01
818 999 3.620488 TCTTGGGTATGCCTTCACAATC 58.380 45.455 0.00 0.00 34.45 2.67
819 1000 3.737559 TCTTGGGTATGCCTTCACAAT 57.262 42.857 0.00 0.00 34.45 2.71
820 1001 3.010027 TCATCTTGGGTATGCCTTCACAA 59.990 43.478 0.00 0.00 34.45 3.33
821 1002 2.575735 TCATCTTGGGTATGCCTTCACA 59.424 45.455 0.00 0.00 34.45 3.58
822 1003 3.281727 TCATCTTGGGTATGCCTTCAC 57.718 47.619 0.00 0.00 34.45 3.18
823 1004 3.266772 AGTTCATCTTGGGTATGCCTTCA 59.733 43.478 0.00 0.00 34.45 3.02
824 1005 3.629398 CAGTTCATCTTGGGTATGCCTTC 59.371 47.826 0.00 0.00 34.45 3.46
825 1006 3.624777 CAGTTCATCTTGGGTATGCCTT 58.375 45.455 0.00 0.00 34.45 4.35
826 1007 2.092212 CCAGTTCATCTTGGGTATGCCT 60.092 50.000 0.00 0.00 34.45 4.75
827 1008 2.301346 CCAGTTCATCTTGGGTATGCC 58.699 52.381 0.00 0.00 0.00 4.40
828 1009 2.301346 CCCAGTTCATCTTGGGTATGC 58.699 52.381 1.33 0.00 36.85 3.14
833 1014 2.292828 AACACCCAGTTCATCTTGGG 57.707 50.000 7.98 7.98 46.64 4.12
834 1015 4.670896 AAAAACACCCAGTTCATCTTGG 57.329 40.909 0.00 0.00 40.26 3.61
857 1038 8.956426 CCAATACAATGTAAAACAGGACTACAT 58.044 33.333 0.00 0.00 37.77 2.29
858 1039 7.940137 ACCAATACAATGTAAAACAGGACTACA 59.060 33.333 0.00 0.00 0.00 2.74
859 1040 8.331730 ACCAATACAATGTAAAACAGGACTAC 57.668 34.615 0.00 0.00 0.00 2.73
892 1073 9.435688 GTAAAGTGGCAATTTCAAGGAAATAAT 57.564 29.630 16.93 0.00 40.77 1.28
893 1074 7.875554 GGTAAAGTGGCAATTTCAAGGAAATAA 59.124 33.333 16.93 0.00 40.77 1.40
894 1075 7.234577 AGGTAAAGTGGCAATTTCAAGGAAATA 59.765 33.333 16.93 0.00 40.77 1.40
895 1076 6.043127 AGGTAAAGTGGCAATTTCAAGGAAAT 59.957 34.615 16.93 0.00 43.07 2.17
896 1077 5.365314 AGGTAAAGTGGCAATTTCAAGGAAA 59.635 36.000 16.93 0.00 35.94 3.13
897 1078 4.898861 AGGTAAAGTGGCAATTTCAAGGAA 59.101 37.500 16.93 0.00 0.00 3.36
898 1079 4.479158 AGGTAAAGTGGCAATTTCAAGGA 58.521 39.130 16.93 0.00 0.00 3.36
899 1080 4.871933 AGGTAAAGTGGCAATTTCAAGG 57.128 40.909 16.93 0.00 0.00 3.61
900 1081 8.137437 CCATATAGGTAAAGTGGCAATTTCAAG 58.863 37.037 16.93 0.33 0.00 3.02
901 1082 8.006298 CCATATAGGTAAAGTGGCAATTTCAA 57.994 34.615 16.93 0.00 0.00 2.69
902 1083 7.581213 CCATATAGGTAAAGTGGCAATTTCA 57.419 36.000 16.93 1.60 0.00 2.69
910 1091 9.220767 GAAAGATTAGCCATATAGGTAAAGTGG 57.779 37.037 0.00 0.00 40.61 4.00
921 1102 9.436957 CGGTGTTATAAGAAAGATTAGCCATAT 57.563 33.333 0.00 0.00 0.00 1.78
922 1103 7.876068 CCGGTGTTATAAGAAAGATTAGCCATA 59.124 37.037 0.00 0.00 0.00 2.74
923 1104 6.710744 CCGGTGTTATAAGAAAGATTAGCCAT 59.289 38.462 0.00 0.00 0.00 4.40
924 1105 6.053005 CCGGTGTTATAAGAAAGATTAGCCA 58.947 40.000 0.00 0.00 0.00 4.75
925 1106 6.285990 TCCGGTGTTATAAGAAAGATTAGCC 58.714 40.000 0.00 0.00 0.00 3.93
926 1107 7.169476 GTCTCCGGTGTTATAAGAAAGATTAGC 59.831 40.741 0.00 0.00 0.00 3.09
927 1108 8.195436 TGTCTCCGGTGTTATAAGAAAGATTAG 58.805 37.037 0.00 0.00 0.00 1.73
928 1109 8.070034 TGTCTCCGGTGTTATAAGAAAGATTA 57.930 34.615 0.00 0.00 0.00 1.75
929 1110 6.942976 TGTCTCCGGTGTTATAAGAAAGATT 58.057 36.000 0.00 0.00 0.00 2.40
930 1111 6.540438 TGTCTCCGGTGTTATAAGAAAGAT 57.460 37.500 0.00 0.00 0.00 2.40
931 1112 5.988310 TGTCTCCGGTGTTATAAGAAAGA 57.012 39.130 0.00 0.00 0.00 2.52
932 1113 8.888579 AATATGTCTCCGGTGTTATAAGAAAG 57.111 34.615 0.00 0.00 0.00 2.62
933 1114 9.321562 GAAATATGTCTCCGGTGTTATAAGAAA 57.678 33.333 0.00 0.00 0.00 2.52
934 1115 7.929785 GGAAATATGTCTCCGGTGTTATAAGAA 59.070 37.037 0.00 0.00 0.00 2.52
935 1116 7.289317 AGGAAATATGTCTCCGGTGTTATAAGA 59.711 37.037 0.00 0.00 36.78 2.10
936 1117 7.442656 AGGAAATATGTCTCCGGTGTTATAAG 58.557 38.462 0.00 0.00 36.78 1.73
937 1118 7.369551 AGGAAATATGTCTCCGGTGTTATAA 57.630 36.000 0.00 0.00 36.78 0.98
938 1119 6.989155 AGGAAATATGTCTCCGGTGTTATA 57.011 37.500 0.00 3.30 36.78 0.98
939 1120 5.888982 AGGAAATATGTCTCCGGTGTTAT 57.111 39.130 0.00 0.97 36.78 1.89
940 1121 5.687166 AAGGAAATATGTCTCCGGTGTTA 57.313 39.130 0.00 0.00 36.78 2.41
941 1122 4.569719 AAGGAAATATGTCTCCGGTGTT 57.430 40.909 0.00 0.00 36.78 3.32
942 1123 4.569719 AAAGGAAATATGTCTCCGGTGT 57.430 40.909 0.00 0.00 36.78 4.16
943 1124 5.424757 TGTAAAGGAAATATGTCTCCGGTG 58.575 41.667 0.00 0.00 36.78 4.94
944 1125 5.687166 TGTAAAGGAAATATGTCTCCGGT 57.313 39.130 0.00 0.00 36.78 5.28
945 1126 6.604735 CTTGTAAAGGAAATATGTCTCCGG 57.395 41.667 0.00 0.00 41.27 5.14
971 1152 0.523072 AGCGTGGCTTGCATAGTTTG 59.477 50.000 4.46 0.00 33.89 2.93
972 1153 2.946947 AGCGTGGCTTGCATAGTTT 58.053 47.368 4.46 0.00 33.89 2.66
973 1154 4.722193 AGCGTGGCTTGCATAGTT 57.278 50.000 4.46 0.00 33.89 2.24
982 1163 2.888834 ACATTTTGAAAAGCGTGGCT 57.111 40.000 0.00 0.00 42.56 4.75
983 1164 5.804979 ACATATACATTTTGAAAAGCGTGGC 59.195 36.000 0.00 0.00 0.00 5.01
984 1165 7.250569 AGACATATACATTTTGAAAAGCGTGG 58.749 34.615 0.00 0.00 0.00 4.94
985 1166 8.177663 AGAGACATATACATTTTGAAAAGCGTG 58.822 33.333 0.00 0.00 0.00 5.34
986 1167 8.268850 AGAGACATATACATTTTGAAAAGCGT 57.731 30.769 0.00 0.00 0.00 5.07
987 1168 9.003112 CAAGAGACATATACATTTTGAAAAGCG 57.997 33.333 0.00 0.00 0.00 4.68
988 1169 9.294030 CCAAGAGACATATACATTTTGAAAAGC 57.706 33.333 0.00 0.00 0.00 3.51
989 1170 9.294030 GCCAAGAGACATATACATTTTGAAAAG 57.706 33.333 0.00 0.00 0.00 2.27
990 1171 8.801299 TGCCAAGAGACATATACATTTTGAAAA 58.199 29.630 0.00 0.00 0.00 2.29
991 1172 8.347004 TGCCAAGAGACATATACATTTTGAAA 57.653 30.769 0.00 0.00 0.00 2.69
992 1173 7.936496 TGCCAAGAGACATATACATTTTGAA 57.064 32.000 0.00 0.00 0.00 2.69
993 1174 7.067372 CCTTGCCAAGAGACATATACATTTTGA 59.933 37.037 5.89 0.00 0.00 2.69
994 1175 7.148018 ACCTTGCCAAGAGACATATACATTTTG 60.148 37.037 5.89 0.00 0.00 2.44
995 1176 6.891908 ACCTTGCCAAGAGACATATACATTTT 59.108 34.615 5.89 0.00 0.00 1.82
996 1177 6.426587 ACCTTGCCAAGAGACATATACATTT 58.573 36.000 5.89 0.00 0.00 2.32
997 1178 6.006275 ACCTTGCCAAGAGACATATACATT 57.994 37.500 5.89 0.00 0.00 2.71
998 1179 5.636903 ACCTTGCCAAGAGACATATACAT 57.363 39.130 5.89 0.00 0.00 2.29
999 1180 6.747414 ATACCTTGCCAAGAGACATATACA 57.253 37.500 5.89 0.00 0.00 2.29
1000 1181 7.667557 TGTATACCTTGCCAAGAGACATATAC 58.332 38.462 5.89 9.85 0.00 1.47
1001 1182 7.849322 TGTATACCTTGCCAAGAGACATATA 57.151 36.000 5.89 0.00 0.00 0.86
1002 1183 6.747414 TGTATACCTTGCCAAGAGACATAT 57.253 37.500 5.89 0.00 0.00 1.78
1003 1184 6.747414 ATGTATACCTTGCCAAGAGACATA 57.253 37.500 5.89 0.00 0.00 2.29
1004 1185 5.636903 ATGTATACCTTGCCAAGAGACAT 57.363 39.130 5.89 3.39 0.00 3.06
1005 1186 5.435686 AATGTATACCTTGCCAAGAGACA 57.564 39.130 5.89 0.88 0.00 3.41
1006 1187 6.759497 AAAATGTATACCTTGCCAAGAGAC 57.241 37.500 5.89 0.00 0.00 3.36
1007 1188 7.630082 ACTAAAATGTATACCTTGCCAAGAGA 58.370 34.615 5.89 0.00 0.00 3.10
1008 1189 7.865706 ACTAAAATGTATACCTTGCCAAGAG 57.134 36.000 5.89 0.00 0.00 2.85
1009 1190 8.644374 AAACTAAAATGTATACCTTGCCAAGA 57.356 30.769 5.89 0.00 0.00 3.02
1012 1193 9.742144 TCTAAAACTAAAATGTATACCTTGCCA 57.258 29.630 0.00 0.00 0.00 4.92
1013 1194 9.999009 GTCTAAAACTAAAATGTATACCTTGCC 57.001 33.333 0.00 0.00 0.00 4.52
1043 1224 9.543783 CGTTCCTATTCTAATAAGCCTTACTTT 57.456 33.333 0.00 0.00 39.97 2.66
1044 1225 8.921205 TCGTTCCTATTCTAATAAGCCTTACTT 58.079 33.333 0.00 0.00 42.76 2.24
1045 1226 8.474710 TCGTTCCTATTCTAATAAGCCTTACT 57.525 34.615 0.00 0.00 0.00 2.24
1046 1227 9.356433 GATCGTTCCTATTCTAATAAGCCTTAC 57.644 37.037 0.00 0.00 0.00 2.34
1047 1228 9.085645 TGATCGTTCCTATTCTAATAAGCCTTA 57.914 33.333 0.00 0.00 0.00 2.69
1048 1229 7.963532 TGATCGTTCCTATTCTAATAAGCCTT 58.036 34.615 0.00 0.00 0.00 4.35
1049 1230 7.540474 TGATCGTTCCTATTCTAATAAGCCT 57.460 36.000 0.00 0.00 0.00 4.58
1050 1231 8.779354 ATTGATCGTTCCTATTCTAATAAGCC 57.221 34.615 0.00 0.00 0.00 4.35
1051 1232 8.874816 GGATTGATCGTTCCTATTCTAATAAGC 58.125 37.037 6.51 0.00 0.00 3.09
1052 1233 9.372369 GGGATTGATCGTTCCTATTCTAATAAG 57.628 37.037 12.14 0.00 32.34 1.73
1053 1234 8.319146 GGGGATTGATCGTTCCTATTCTAATAA 58.681 37.037 12.14 0.00 32.34 1.40
1054 1235 7.678598 AGGGGATTGATCGTTCCTATTCTAATA 59.321 37.037 12.14 0.00 32.34 0.98
1055 1236 6.502158 AGGGGATTGATCGTTCCTATTCTAAT 59.498 38.462 12.14 0.00 32.34 1.73
1056 1237 5.844516 AGGGGATTGATCGTTCCTATTCTAA 59.155 40.000 12.14 0.00 32.34 2.10
1057 1238 5.246203 CAGGGGATTGATCGTTCCTATTCTA 59.754 44.000 12.14 0.00 32.34 2.10
1058 1239 4.040952 CAGGGGATTGATCGTTCCTATTCT 59.959 45.833 12.14 4.58 32.34 2.40
1059 1240 4.040461 TCAGGGGATTGATCGTTCCTATTC 59.960 45.833 12.14 0.00 32.34 1.75
1060 1241 3.973973 TCAGGGGATTGATCGTTCCTATT 59.026 43.478 12.14 0.00 32.34 1.73
1061 1242 3.587498 TCAGGGGATTGATCGTTCCTAT 58.413 45.455 12.14 1.19 32.34 2.57
1062 1243 3.040655 TCAGGGGATTGATCGTTCCTA 57.959 47.619 12.14 0.00 32.34 2.94
1063 1244 1.879575 TCAGGGGATTGATCGTTCCT 58.120 50.000 12.14 1.44 32.34 3.36
1064 1245 2.710096 TTCAGGGGATTGATCGTTCC 57.290 50.000 5.39 5.39 0.00 3.62
1065 1246 5.180117 CACATATTCAGGGGATTGATCGTTC 59.820 44.000 0.00 0.00 0.00 3.95
1066 1247 5.065914 CACATATTCAGGGGATTGATCGTT 58.934 41.667 0.00 0.00 0.00 3.85
1067 1248 4.347876 TCACATATTCAGGGGATTGATCGT 59.652 41.667 0.00 0.00 0.00 3.73
1068 1249 4.898320 TCACATATTCAGGGGATTGATCG 58.102 43.478 0.00 0.00 0.00 3.69
1069 1250 6.349944 GCAATCACATATTCAGGGGATTGATC 60.350 42.308 17.95 0.89 42.42 2.92
1070 1251 5.479375 GCAATCACATATTCAGGGGATTGAT 59.521 40.000 17.95 0.00 42.42 2.57
1071 1252 4.828939 GCAATCACATATTCAGGGGATTGA 59.171 41.667 17.95 0.00 42.42 2.57
1072 1253 4.585581 TGCAATCACATATTCAGGGGATTG 59.414 41.667 11.24 11.24 42.60 2.67
1073 1254 4.806892 TGCAATCACATATTCAGGGGATT 58.193 39.130 0.00 0.00 0.00 3.01
1074 1255 4.458256 TGCAATCACATATTCAGGGGAT 57.542 40.909 0.00 0.00 0.00 3.85
1075 1256 3.949586 TGCAATCACATATTCAGGGGA 57.050 42.857 0.00 0.00 0.00 4.81
1076 1257 3.700539 TGTTGCAATCACATATTCAGGGG 59.299 43.478 0.59 0.00 0.00 4.79
1077 1258 4.641541 TCTGTTGCAATCACATATTCAGGG 59.358 41.667 0.59 0.00 0.00 4.45
1078 1259 5.587443 TCTCTGTTGCAATCACATATTCAGG 59.413 40.000 0.59 0.00 0.00 3.86
1079 1260 6.673154 TCTCTGTTGCAATCACATATTCAG 57.327 37.500 0.59 1.76 0.00 3.02
1080 1261 6.656270 ACTTCTCTGTTGCAATCACATATTCA 59.344 34.615 0.59 0.00 0.00 2.57
1081 1262 7.081526 ACTTCTCTGTTGCAATCACATATTC 57.918 36.000 0.59 0.00 0.00 1.75
1082 1263 6.094603 GGACTTCTCTGTTGCAATCACATATT 59.905 38.462 0.59 0.00 0.00 1.28
1083 1264 5.587844 GGACTTCTCTGTTGCAATCACATAT 59.412 40.000 0.59 0.00 0.00 1.78
1084 1265 4.937620 GGACTTCTCTGTTGCAATCACATA 59.062 41.667 0.59 0.00 0.00 2.29
1085 1266 3.755378 GGACTTCTCTGTTGCAATCACAT 59.245 43.478 0.59 0.00 0.00 3.21
1086 1267 3.141398 GGACTTCTCTGTTGCAATCACA 58.859 45.455 0.59 0.00 0.00 3.58
1087 1268 3.141398 TGGACTTCTCTGTTGCAATCAC 58.859 45.455 0.59 0.00 0.00 3.06
1088 1269 3.490439 TGGACTTCTCTGTTGCAATCA 57.510 42.857 0.59 1.80 0.00 2.57
1089 1270 4.067896 TCTTGGACTTCTCTGTTGCAATC 58.932 43.478 0.59 0.00 0.00 2.67
1090 1271 4.090761 TCTTGGACTTCTCTGTTGCAAT 57.909 40.909 0.59 0.00 0.00 3.56
1091 1272 3.558931 TCTTGGACTTCTCTGTTGCAA 57.441 42.857 0.00 0.00 0.00 4.08
1092 1273 3.558931 TTCTTGGACTTCTCTGTTGCA 57.441 42.857 0.00 0.00 0.00 4.08
1093 1274 3.879892 AGTTTCTTGGACTTCTCTGTTGC 59.120 43.478 0.00 0.00 0.00 4.17
1094 1275 5.118990 TGAGTTTCTTGGACTTCTCTGTTG 58.881 41.667 0.00 0.00 0.00 3.33
1095 1276 5.359194 TGAGTTTCTTGGACTTCTCTGTT 57.641 39.130 0.00 0.00 0.00 3.16
1096 1277 5.359194 TTGAGTTTCTTGGACTTCTCTGT 57.641 39.130 0.00 0.00 0.00 3.41
1097 1278 6.018343 GTCTTTGAGTTTCTTGGACTTCTCTG 60.018 42.308 0.00 0.00 0.00 3.35
1098 1279 6.052360 GTCTTTGAGTTTCTTGGACTTCTCT 58.948 40.000 0.00 0.00 0.00 3.10
1099 1280 6.018343 CAGTCTTTGAGTTTCTTGGACTTCTC 60.018 42.308 0.00 0.00 31.40 2.87
1100 1281 5.819901 CAGTCTTTGAGTTTCTTGGACTTCT 59.180 40.000 0.00 0.00 31.40 2.85
1101 1282 5.586643 ACAGTCTTTGAGTTTCTTGGACTTC 59.413 40.000 0.00 0.00 31.40 3.01
1102 1283 5.501156 ACAGTCTTTGAGTTTCTTGGACTT 58.499 37.500 0.00 0.00 31.40 3.01
1103 1284 5.104259 ACAGTCTTTGAGTTTCTTGGACT 57.896 39.130 0.00 0.00 33.60 3.85
1104 1285 4.876107 TGACAGTCTTTGAGTTTCTTGGAC 59.124 41.667 1.31 0.00 0.00 4.02
1105 1286 4.876107 GTGACAGTCTTTGAGTTTCTTGGA 59.124 41.667 1.31 0.00 0.00 3.53
1106 1287 4.878397 AGTGACAGTCTTTGAGTTTCTTGG 59.122 41.667 1.31 0.00 0.00 3.61
1107 1288 5.582269 TCAGTGACAGTCTTTGAGTTTCTTG 59.418 40.000 1.31 0.00 0.00 3.02
1108 1289 5.734720 TCAGTGACAGTCTTTGAGTTTCTT 58.265 37.500 1.31 0.00 0.00 2.52
1109 1290 5.344743 TCAGTGACAGTCTTTGAGTTTCT 57.655 39.130 1.31 0.00 0.00 2.52
1110 1291 4.509600 CCTCAGTGACAGTCTTTGAGTTTC 59.490 45.833 22.62 0.00 34.81 2.78
1111 1292 4.446371 CCTCAGTGACAGTCTTTGAGTTT 58.554 43.478 22.62 0.00 34.81 2.66
1112 1293 3.742640 GCCTCAGTGACAGTCTTTGAGTT 60.743 47.826 22.62 0.00 34.81 3.01
1113 1294 2.224161 GCCTCAGTGACAGTCTTTGAGT 60.224 50.000 22.62 0.00 34.81 3.41
1114 1295 2.036992 AGCCTCAGTGACAGTCTTTGAG 59.963 50.000 19.86 19.86 36.04 3.02
1115 1296 2.042464 AGCCTCAGTGACAGTCTTTGA 58.958 47.619 1.31 4.94 0.00 2.69
1116 1297 2.540265 AGCCTCAGTGACAGTCTTTG 57.460 50.000 1.31 0.52 0.00 2.77
1117 1298 3.898123 TCTTAGCCTCAGTGACAGTCTTT 59.102 43.478 1.31 0.00 0.00 2.52
1118 1299 3.501349 TCTTAGCCTCAGTGACAGTCTT 58.499 45.455 1.31 0.00 0.00 3.01
1119 1300 3.162147 TCTTAGCCTCAGTGACAGTCT 57.838 47.619 1.31 0.00 0.00 3.24
1120 1301 3.508012 TCTTCTTAGCCTCAGTGACAGTC 59.492 47.826 0.00 0.00 0.00 3.51
1121 1302 3.501349 TCTTCTTAGCCTCAGTGACAGT 58.499 45.455 0.00 0.00 0.00 3.55
1122 1303 4.527509 TTCTTCTTAGCCTCAGTGACAG 57.472 45.455 0.00 0.00 0.00 3.51
1123 1304 4.323028 CCATTCTTCTTAGCCTCAGTGACA 60.323 45.833 0.00 0.00 0.00 3.58
1124 1305 4.187694 CCATTCTTCTTAGCCTCAGTGAC 58.812 47.826 0.00 0.00 0.00 3.67
1125 1306 3.198635 CCCATTCTTCTTAGCCTCAGTGA 59.801 47.826 0.00 0.00 0.00 3.41
1126 1307 3.539604 CCCATTCTTCTTAGCCTCAGTG 58.460 50.000 0.00 0.00 0.00 3.66
1127 1308 2.092699 GCCCATTCTTCTTAGCCTCAGT 60.093 50.000 0.00 0.00 0.00 3.41
1128 1309 2.172293 AGCCCATTCTTCTTAGCCTCAG 59.828 50.000 0.00 0.00 0.00 3.35
1129 1310 2.200081 AGCCCATTCTTCTTAGCCTCA 58.800 47.619 0.00 0.00 0.00 3.86
1130 1311 3.289407 AAGCCCATTCTTCTTAGCCTC 57.711 47.619 0.00 0.00 0.00 4.70
1131 1312 3.245407 ACAAAGCCCATTCTTCTTAGCCT 60.245 43.478 0.00 0.00 0.00 4.58
1132 1313 3.092301 ACAAAGCCCATTCTTCTTAGCC 58.908 45.455 0.00 0.00 0.00 3.93
1133 1314 4.013050 AGACAAAGCCCATTCTTCTTAGC 58.987 43.478 0.00 0.00 0.00 3.09
1134 1315 4.331168 CGAGACAAAGCCCATTCTTCTTAG 59.669 45.833 0.00 0.00 0.00 2.18
1135 1316 4.253685 CGAGACAAAGCCCATTCTTCTTA 58.746 43.478 0.00 0.00 0.00 2.10
1136 1317 3.077359 CGAGACAAAGCCCATTCTTCTT 58.923 45.455 0.00 0.00 0.00 2.52
1137 1318 2.039084 ACGAGACAAAGCCCATTCTTCT 59.961 45.455 0.00 0.00 0.00 2.85
1138 1319 2.427506 ACGAGACAAAGCCCATTCTTC 58.572 47.619 0.00 0.00 0.00 2.87
1139 1320 2.568623 ACGAGACAAAGCCCATTCTT 57.431 45.000 0.00 0.00 0.00 2.52
1140 1321 2.354805 GGTACGAGACAAAGCCCATTCT 60.355 50.000 0.00 0.00 0.00 2.40
1141 1322 2.007608 GGTACGAGACAAAGCCCATTC 58.992 52.381 0.00 0.00 0.00 2.67
1142 1323 1.349688 TGGTACGAGACAAAGCCCATT 59.650 47.619 0.00 0.00 0.00 3.16
1143 1324 0.981183 TGGTACGAGACAAAGCCCAT 59.019 50.000 0.00 0.00 0.00 4.00
1144 1325 0.320374 CTGGTACGAGACAAAGCCCA 59.680 55.000 0.00 0.00 0.00 5.36
1145 1326 1.019805 GCTGGTACGAGACAAAGCCC 61.020 60.000 9.33 0.00 34.66 5.19
1146 1327 0.320421 TGCTGGTACGAGACAAAGCC 60.320 55.000 9.33 0.00 38.11 4.35
1147 1328 0.790814 GTGCTGGTACGAGACAAAGC 59.209 55.000 9.33 0.92 38.92 3.51
1148 1329 2.061773 CAGTGCTGGTACGAGACAAAG 58.938 52.381 9.33 0.00 0.00 2.77
1149 1330 1.684450 TCAGTGCTGGTACGAGACAAA 59.316 47.619 9.33 0.00 0.00 2.83
1150 1331 1.269723 CTCAGTGCTGGTACGAGACAA 59.730 52.381 9.33 0.00 0.00 3.18
1151 1332 0.881796 CTCAGTGCTGGTACGAGACA 59.118 55.000 9.33 3.67 0.00 3.41
1152 1333 0.882474 ACTCAGTGCTGGTACGAGAC 59.118 55.000 9.33 4.48 0.00 3.36
1153 1334 1.166129 GACTCAGTGCTGGTACGAGA 58.834 55.000 9.33 0.00 0.00 4.04
1154 1335 0.881796 TGACTCAGTGCTGGTACGAG 59.118 55.000 0.00 0.00 0.00 4.18
1155 1336 1.324383 TTGACTCAGTGCTGGTACGA 58.676 50.000 0.00 0.00 0.00 3.43
1156 1337 2.370281 ATTGACTCAGTGCTGGTACG 57.630 50.000 0.00 0.00 0.00 3.67
1157 1338 2.160417 GCAATTGACTCAGTGCTGGTAC 59.840 50.000 10.34 0.00 34.13 3.34
1158 1339 2.224499 TGCAATTGACTCAGTGCTGGTA 60.224 45.455 10.34 0.00 37.87 3.25
1159 1340 1.242076 GCAATTGACTCAGTGCTGGT 58.758 50.000 10.34 0.00 34.13 4.00
1160 1341 1.241165 TGCAATTGACTCAGTGCTGG 58.759 50.000 10.34 0.00 37.87 4.85
1161 1342 2.551032 TCTTGCAATTGACTCAGTGCTG 59.449 45.455 10.34 9.48 37.87 4.41
1162 1343 2.854963 TCTTGCAATTGACTCAGTGCT 58.145 42.857 10.34 0.00 37.87 4.40
1163 1344 3.631145 TTCTTGCAATTGACTCAGTGC 57.369 42.857 10.34 9.00 37.51 4.40
1164 1345 4.202040 TGGTTTCTTGCAATTGACTCAGTG 60.202 41.667 10.34 0.00 0.00 3.66
1165 1346 3.953612 TGGTTTCTTGCAATTGACTCAGT 59.046 39.130 10.34 0.00 0.00 3.41
1166 1347 4.293415 GTGGTTTCTTGCAATTGACTCAG 58.707 43.478 10.34 0.00 0.00 3.35
1345 1526 3.276846 GTTTGCCTGTCCGCACGT 61.277 61.111 0.00 0.00 38.83 4.49
1369 1551 4.689345 CGTCTTGACCGTTTTCTTCCTAAT 59.311 41.667 0.00 0.00 0.00 1.73
1434 1616 0.107410 GAGAGAGAGAGAGGGCACGA 60.107 60.000 0.00 0.00 0.00 4.35
2310 2522 5.404096 CACATGCACAATTCAGCTCAATTA 58.596 37.500 0.00 0.00 0.00 1.40
2580 2867 4.965200 AGTCTCCTGTAGCTTGTTCTTT 57.035 40.909 0.00 0.00 0.00 2.52
3474 7607 0.105453 ATCATCTAGGGTGCCTCGGT 60.105 55.000 0.00 0.00 34.61 4.69
3733 8015 6.114187 TCTGGTTGTCATGAGTACTTTCAT 57.886 37.500 0.00 0.00 38.30 2.57
3734 8016 5.545063 TCTGGTTGTCATGAGTACTTTCA 57.455 39.130 0.00 0.00 0.00 2.69
3735 8017 8.547967 TTATTCTGGTTGTCATGAGTACTTTC 57.452 34.615 0.00 0.00 0.00 2.62
3736 8018 8.918202 TTTATTCTGGTTGTCATGAGTACTTT 57.082 30.769 0.00 0.00 0.00 2.66
3737 8019 8.375506 TCTTTATTCTGGTTGTCATGAGTACTT 58.624 33.333 0.00 0.00 0.00 2.24
3738 8020 7.907389 TCTTTATTCTGGTTGTCATGAGTACT 58.093 34.615 0.00 0.00 0.00 2.73
3739 8021 8.607459 CATCTTTATTCTGGTTGTCATGAGTAC 58.393 37.037 0.00 0.00 0.00 2.73
3740 8022 8.321353 ACATCTTTATTCTGGTTGTCATGAGTA 58.679 33.333 0.00 0.00 0.00 2.59
3741 8023 7.170965 ACATCTTTATTCTGGTTGTCATGAGT 58.829 34.615 0.00 0.00 0.00 3.41
3742 8024 7.621428 ACATCTTTATTCTGGTTGTCATGAG 57.379 36.000 0.00 0.00 0.00 2.90
3743 8025 8.408043 AAACATCTTTATTCTGGTTGTCATGA 57.592 30.769 0.00 0.00 0.00 3.07
3744 8026 9.778993 CTAAACATCTTTATTCTGGTTGTCATG 57.221 33.333 0.00 0.00 0.00 3.07
3745 8027 9.739276 TCTAAACATCTTTATTCTGGTTGTCAT 57.261 29.630 0.00 0.00 0.00 3.06
3746 8028 9.567776 TTCTAAACATCTTTATTCTGGTTGTCA 57.432 29.630 0.00 0.00 0.00 3.58
3747 8029 9.827411 GTTCTAAACATCTTTATTCTGGTTGTC 57.173 33.333 0.00 0.00 0.00 3.18
3748 8030 9.349713 TGTTCTAAACATCTTTATTCTGGTTGT 57.650 29.630 0.00 0.00 36.25 3.32
3995 8447 0.250727 GCTGGTGCTGGTCCAAGTTA 60.251 55.000 0.00 0.00 34.35 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.