Multiple sequence alignment - TraesCS2D01G357600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G357600 chr2D 100.000 5863 0 0 1 5863 459771490 459777352 0.000000e+00 10828.0
1 TraesCS2D01G357600 chr2D 96.600 500 17 0 5364 5863 43889894 43890393 0.000000e+00 830.0
2 TraesCS2D01G357600 chr2D 84.571 175 22 5 4087 4259 311718136 311718307 1.010000e-37 169.0
3 TraesCS2D01G357600 chr2D 100.000 36 0 0 2022 2057 188810559 188810524 3.790000e-07 67.6
4 TraesCS2D01G357600 chr2B 93.725 4908 161 55 457 5287 541005736 541010573 0.000000e+00 7221.0
5 TraesCS2D01G357600 chr2B 92.000 125 4 4 386 509 541005634 541005753 2.810000e-38 171.0
6 TraesCS2D01G357600 chr2B 84.270 178 23 5 4087 4262 361423586 361423412 1.010000e-37 169.0
7 TraesCS2D01G357600 chr2B 98.182 55 1 0 5312 5366 541010573 541010627 4.840000e-16 97.1
8 TraesCS2D01G357600 chr3D 98.390 497 7 1 5367 5863 31790294 31790789 0.000000e+00 872.0
9 TraesCS2D01G357600 chr3D 97.410 502 11 2 5363 5863 609330395 609329895 0.000000e+00 854.0
10 TraesCS2D01G357600 chr3D 80.095 211 28 7 74 284 412387283 412387479 1.700000e-30 145.0
11 TraesCS2D01G357600 chr5D 97.992 498 10 0 5366 5863 442964419 442964916 0.000000e+00 865.0
12 TraesCS2D01G357600 chr5D 97.384 497 13 0 5367 5863 435192756 435193252 0.000000e+00 846.0
13 TraesCS2D01G357600 chr5D 97.379 496 13 0 5368 5863 43087147 43087642 0.000000e+00 845.0
14 TraesCS2D01G357600 chr4D 97.586 497 12 0 5367 5863 494026357 494026853 0.000000e+00 852.0
15 TraesCS2D01G357600 chr4D 83.857 223 28 5 64 284 11147235 11147451 7.700000e-49 206.0
16 TraesCS2D01G357600 chr4D 95.238 42 1 1 2015 2056 39411235 39411195 1.360000e-06 65.8
17 TraesCS2D01G357600 chr6D 97.390 498 12 1 5366 5863 124597510 124598006 0.000000e+00 846.0
18 TraesCS2D01G357600 chr6D 96.781 497 12 1 5367 5863 9124703 9125195 0.000000e+00 826.0
19 TraesCS2D01G357600 chr6D 87.302 63 5 3 4795 4857 291236309 291236368 1.050000e-07 69.4
20 TraesCS2D01G357600 chr6D 100.000 35 0 0 2023 2057 115051911 115051877 1.360000e-06 65.8
21 TraesCS2D01G357600 chr2A 86.420 243 31 2 34 274 162412185 162411943 1.250000e-66 265.0
22 TraesCS2D01G357600 chr2A 83.908 174 23 5 4088 4259 428910973 428911143 1.690000e-35 161.0
23 TraesCS2D01G357600 chr7D 84.889 225 27 4 60 284 575748583 575748800 2.750000e-53 220.0
24 TraesCS2D01G357600 chr7D 80.465 215 28 5 70 284 174958739 174958939 1.020000e-32 152.0
25 TraesCS2D01G357600 chr5B 80.162 247 36 9 86 321 699981882 699982126 7.810000e-39 172.0
26 TraesCS2D01G357600 chr6B 85.897 78 8 3 4787 4864 452176887 452176961 4.870000e-11 80.5
27 TraesCS2D01G357600 chr6A 92.453 53 4 0 4812 4864 432253607 432253555 6.300000e-10 76.8
28 TraesCS2D01G357600 chr3A 95.652 46 0 1 2014 2057 624931321 624931366 8.150000e-09 73.1
29 TraesCS2D01G357600 chr3A 100.000 35 0 0 2023 2057 75408010 75407976 1.360000e-06 65.8
30 TraesCS2D01G357600 chr4B 100.000 35 0 0 2023 2057 203847235 203847201 1.360000e-06 65.8
31 TraesCS2D01G357600 chr1D 100.000 35 0 0 2023 2057 356862350 356862316 1.360000e-06 65.8
32 TraesCS2D01G357600 chr1D 91.304 46 2 2 2010 2055 429697648 429697605 1.760000e-05 62.1
33 TraesCS2D01G357600 chr7A 93.182 44 0 3 2011 2051 40696218 40696175 1.760000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G357600 chr2D 459771490 459777352 5862 False 10828.000000 10828 100.000000 1 5863 1 chr2D.!!$F3 5862
1 TraesCS2D01G357600 chr2B 541005634 541010627 4993 False 2496.366667 7221 94.635667 386 5366 3 chr2B.!!$F1 4980
2 TraesCS2D01G357600 chr3D 609329895 609330395 500 True 854.000000 854 97.410000 5363 5863 1 chr3D.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.108774 TATCCCGTTGCAACACACCA 59.891 50.000 28.01 8.11 0.00 4.17 F
129 130 0.179001 CCACCCTTTCGTCCAACCTT 60.179 55.000 0.00 0.00 0.00 3.50 F
324 325 0.248843 TACCATGCTGCGACACATGA 59.751 50.000 0.00 0.00 45.23 3.07 F
326 327 0.306840 CCATGCTGCGACACATGATC 59.693 55.000 0.00 0.00 45.23 2.92 F
1464 1520 0.733223 GCAACTCCTTCTCCGACGTC 60.733 60.000 5.18 5.18 0.00 4.34 F
2796 2882 0.396435 TTGTGTCAATGCCGACCTCT 59.604 50.000 0.00 0.00 34.88 3.69 F
2814 2900 1.002430 TCTCCTGGAACATGACACTGC 59.998 52.381 0.00 0.00 38.20 4.40 F
3389 3484 2.127383 GGTTTTTCTCGTGGCGCG 60.127 61.111 15.42 15.42 43.01 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 1984 0.729690 GAAGCCAAGAAGATCCACGC 59.270 55.000 0.00 0.00 0.00 5.34 R
1940 1996 1.352083 AGGTCACTAGCAGAAGCCAA 58.648 50.000 0.00 0.00 43.56 4.52 R
2144 2200 1.063174 AGCTACTTCTAACCGTACGCG 59.937 52.381 10.49 3.53 37.95 6.01 R
2219 2276 8.487176 ACGATCATGATTTAAACAAGTTTTTGC 58.513 29.630 10.14 0.00 37.85 3.68 R
2947 3041 0.179200 GCCTACGCAAATGTTCACCG 60.179 55.000 0.00 0.00 34.03 4.94 R
3657 3752 0.108424 ACAGCACAGCTACTAGCAGC 60.108 55.000 6.87 6.87 45.56 5.25 R
3660 3755 0.108424 AGCACAGCACAGCTACTAGC 60.108 55.000 0.00 0.00 42.84 3.42 R
4920 5018 0.249531 TTTCCAGTTACTCGTGCGCA 60.250 50.000 5.66 5.66 0.00 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.987750 TTAGCATATTTTATATCCCGTTGCA 57.012 32.000 0.00 0.00 0.00 4.08
43 44 6.892658 AGCATATTTTATATCCCGTTGCAA 57.107 33.333 0.00 0.00 0.00 4.08
44 45 6.677913 AGCATATTTTATATCCCGTTGCAAC 58.322 36.000 19.89 19.89 0.00 4.17
45 46 6.264292 AGCATATTTTATATCCCGTTGCAACA 59.736 34.615 28.01 10.43 0.00 3.33
46 47 6.362283 GCATATTTTATATCCCGTTGCAACAC 59.638 38.462 28.01 4.26 0.00 3.32
47 48 5.906113 ATTTTATATCCCGTTGCAACACA 57.094 34.783 28.01 12.01 0.00 3.72
48 49 4.688511 TTTATATCCCGTTGCAACACAC 57.311 40.909 28.01 3.05 0.00 3.82
49 50 1.459450 ATATCCCGTTGCAACACACC 58.541 50.000 28.01 1.98 0.00 4.16
50 51 0.108774 TATCCCGTTGCAACACACCA 59.891 50.000 28.01 8.11 0.00 4.17
51 52 1.172180 ATCCCGTTGCAACACACCAG 61.172 55.000 28.01 11.22 0.00 4.00
52 53 2.026014 CCGTTGCAACACACCAGC 59.974 61.111 28.01 0.00 0.00 4.85
53 54 2.769539 CCGTTGCAACACACCAGCA 61.770 57.895 28.01 0.00 36.32 4.41
54 55 1.359833 CGTTGCAACACACCAGCAT 59.640 52.632 28.01 0.00 38.19 3.79
55 56 0.248990 CGTTGCAACACACCAGCATT 60.249 50.000 28.01 0.00 38.19 3.56
56 57 1.210870 GTTGCAACACACCAGCATTG 58.789 50.000 24.52 0.00 38.19 2.82
57 58 0.822811 TTGCAACACACCAGCATTGT 59.177 45.000 0.00 0.00 38.19 2.71
77 78 8.932791 GCATTGTGCTAGTACTACTTAAAAAGA 58.067 33.333 12.42 0.00 40.96 2.52
107 108 8.479313 AAGGTTTCATGTTTCACTTTTCTTTC 57.521 30.769 0.00 0.00 0.00 2.62
108 109 7.840931 AGGTTTCATGTTTCACTTTTCTTTCT 58.159 30.769 0.00 0.00 0.00 2.52
109 110 7.761249 AGGTTTCATGTTTCACTTTTCTTTCTG 59.239 33.333 0.00 0.00 0.00 3.02
110 111 7.394099 GTTTCATGTTTCACTTTTCTTTCTGC 58.606 34.615 0.00 0.00 0.00 4.26
111 112 5.591099 TCATGTTTCACTTTTCTTTCTGCC 58.409 37.500 0.00 0.00 0.00 4.85
112 113 5.126869 TCATGTTTCACTTTTCTTTCTGCCA 59.873 36.000 0.00 0.00 0.00 4.92
113 114 4.743493 TGTTTCACTTTTCTTTCTGCCAC 58.257 39.130 0.00 0.00 0.00 5.01
114 115 4.112634 GTTTCACTTTTCTTTCTGCCACC 58.887 43.478 0.00 0.00 0.00 4.61
115 116 2.306847 TCACTTTTCTTTCTGCCACCC 58.693 47.619 0.00 0.00 0.00 4.61
116 117 2.091885 TCACTTTTCTTTCTGCCACCCT 60.092 45.455 0.00 0.00 0.00 4.34
117 118 2.695147 CACTTTTCTTTCTGCCACCCTT 59.305 45.455 0.00 0.00 0.00 3.95
118 119 3.132824 CACTTTTCTTTCTGCCACCCTTT 59.867 43.478 0.00 0.00 0.00 3.11
119 120 3.384789 ACTTTTCTTTCTGCCACCCTTTC 59.615 43.478 0.00 0.00 0.00 2.62
120 121 1.604604 TTCTTTCTGCCACCCTTTCG 58.395 50.000 0.00 0.00 0.00 3.46
121 122 0.472471 TCTTTCTGCCACCCTTTCGT 59.528 50.000 0.00 0.00 0.00 3.85
122 123 0.875059 CTTTCTGCCACCCTTTCGTC 59.125 55.000 0.00 0.00 0.00 4.20
123 124 0.536460 TTTCTGCCACCCTTTCGTCC 60.536 55.000 0.00 0.00 0.00 4.79
124 125 1.701031 TTCTGCCACCCTTTCGTCCA 61.701 55.000 0.00 0.00 0.00 4.02
125 126 1.228124 CTGCCACCCTTTCGTCCAA 60.228 57.895 0.00 0.00 0.00 3.53
126 127 1.515521 CTGCCACCCTTTCGTCCAAC 61.516 60.000 0.00 0.00 0.00 3.77
127 128 2.265904 GCCACCCTTTCGTCCAACC 61.266 63.158 0.00 0.00 0.00 3.77
128 129 1.454539 CCACCCTTTCGTCCAACCT 59.545 57.895 0.00 0.00 0.00 3.50
129 130 0.179001 CCACCCTTTCGTCCAACCTT 60.179 55.000 0.00 0.00 0.00 3.50
130 131 1.687563 CACCCTTTCGTCCAACCTTT 58.312 50.000 0.00 0.00 0.00 3.11
131 132 2.028876 CACCCTTTCGTCCAACCTTTT 58.971 47.619 0.00 0.00 0.00 2.27
132 133 2.429250 CACCCTTTCGTCCAACCTTTTT 59.571 45.455 0.00 0.00 0.00 1.94
235 236 7.781324 AAATATAAGGTAAATCATGGGCAGG 57.219 36.000 0.00 0.00 0.00 4.85
236 237 6.718593 ATATAAGGTAAATCATGGGCAGGA 57.281 37.500 0.00 0.00 0.00 3.86
237 238 3.756082 AAGGTAAATCATGGGCAGGAA 57.244 42.857 0.00 0.00 0.00 3.36
238 239 3.979501 AGGTAAATCATGGGCAGGAAT 57.020 42.857 0.00 0.00 0.00 3.01
239 240 4.270317 AGGTAAATCATGGGCAGGAATT 57.730 40.909 0.00 0.00 0.00 2.17
240 241 3.962718 AGGTAAATCATGGGCAGGAATTG 59.037 43.478 0.00 0.00 0.00 2.32
241 242 3.960102 GGTAAATCATGGGCAGGAATTGA 59.040 43.478 0.00 0.00 0.00 2.57
242 243 4.590222 GGTAAATCATGGGCAGGAATTGAT 59.410 41.667 0.00 0.00 0.00 2.57
243 244 5.774690 GGTAAATCATGGGCAGGAATTGATA 59.225 40.000 0.00 0.00 0.00 2.15
244 245 6.267471 GGTAAATCATGGGCAGGAATTGATAA 59.733 38.462 0.00 0.00 0.00 1.75
245 246 6.811634 AAATCATGGGCAGGAATTGATAAA 57.188 33.333 0.00 0.00 0.00 1.40
246 247 5.796424 ATCATGGGCAGGAATTGATAAAC 57.204 39.130 0.00 0.00 0.00 2.01
247 248 4.608269 TCATGGGCAGGAATTGATAAACA 58.392 39.130 0.00 0.00 0.00 2.83
248 249 5.210430 TCATGGGCAGGAATTGATAAACAT 58.790 37.500 0.00 0.00 0.00 2.71
249 250 5.662208 TCATGGGCAGGAATTGATAAACATT 59.338 36.000 0.00 0.00 0.00 2.71
250 251 6.156602 TCATGGGCAGGAATTGATAAACATTT 59.843 34.615 0.00 0.00 0.00 2.32
251 252 7.344093 TCATGGGCAGGAATTGATAAACATTTA 59.656 33.333 0.00 0.00 0.00 1.40
252 253 7.673641 TGGGCAGGAATTGATAAACATTTAT 57.326 32.000 0.00 0.00 36.14 1.40
253 254 8.088463 TGGGCAGGAATTGATAAACATTTATT 57.912 30.769 0.00 0.00 33.72 1.40
254 255 8.547173 TGGGCAGGAATTGATAAACATTTATTT 58.453 29.630 0.00 0.00 33.72 1.40
279 280 7.246674 ACACAAACGTATTAATATGAGCAGG 57.753 36.000 19.37 9.29 0.00 4.85
280 281 6.821665 ACACAAACGTATTAATATGAGCAGGT 59.178 34.615 19.37 9.80 0.00 4.00
281 282 7.982919 ACACAAACGTATTAATATGAGCAGGTA 59.017 33.333 19.37 0.00 0.00 3.08
282 283 8.822855 CACAAACGTATTAATATGAGCAGGTAA 58.177 33.333 19.37 0.00 0.00 2.85
283 284 9.386010 ACAAACGTATTAATATGAGCAGGTAAA 57.614 29.630 19.37 0.00 0.00 2.01
284 285 9.864034 CAAACGTATTAATATGAGCAGGTAAAG 57.136 33.333 19.37 0.00 0.00 1.85
285 286 8.603242 AACGTATTAATATGAGCAGGTAAAGG 57.397 34.615 19.37 0.00 0.00 3.11
286 287 7.732996 ACGTATTAATATGAGCAGGTAAAGGT 58.267 34.615 19.37 0.00 0.00 3.50
287 288 8.863086 ACGTATTAATATGAGCAGGTAAAGGTA 58.137 33.333 19.37 0.00 0.00 3.08
288 289 9.701098 CGTATTAATATGAGCAGGTAAAGGTAA 57.299 33.333 8.77 0.00 0.00 2.85
297 298 8.313944 TGAGCAGGTAAAGGTAACATATTAGA 57.686 34.615 0.00 0.00 41.41 2.10
298 299 8.764558 TGAGCAGGTAAAGGTAACATATTAGAA 58.235 33.333 0.00 0.00 41.41 2.10
299 300 9.780186 GAGCAGGTAAAGGTAACATATTAGAAT 57.220 33.333 0.00 0.00 41.41 2.40
318 319 6.727824 AGAATATTTATACCATGCTGCGAC 57.272 37.500 0.00 0.00 0.00 5.19
319 320 6.230472 AGAATATTTATACCATGCTGCGACA 58.770 36.000 0.00 0.00 0.00 4.35
320 321 5.862924 ATATTTATACCATGCTGCGACAC 57.137 39.130 0.00 0.00 0.00 3.67
321 322 2.682155 TTATACCATGCTGCGACACA 57.318 45.000 0.00 0.00 0.00 3.72
322 323 2.908688 TATACCATGCTGCGACACAT 57.091 45.000 0.00 0.00 0.00 3.21
323 324 1.302366 ATACCATGCTGCGACACATG 58.698 50.000 0.00 0.00 42.67 3.21
324 325 0.248843 TACCATGCTGCGACACATGA 59.751 50.000 0.00 0.00 45.23 3.07
325 326 0.393402 ACCATGCTGCGACACATGAT 60.393 50.000 0.00 0.00 45.23 2.45
326 327 0.306840 CCATGCTGCGACACATGATC 59.693 55.000 0.00 0.00 45.23 2.92
327 328 1.011333 CATGCTGCGACACATGATCA 58.989 50.000 0.00 0.00 45.23 2.92
328 329 1.602377 CATGCTGCGACACATGATCAT 59.398 47.619 1.18 1.18 45.23 2.45
329 330 1.741528 TGCTGCGACACATGATCATT 58.258 45.000 5.16 0.00 0.00 2.57
330 331 1.399089 TGCTGCGACACATGATCATTG 59.601 47.619 5.16 10.39 0.00 2.82
331 332 1.399440 GCTGCGACACATGATCATTGT 59.601 47.619 17.77 17.77 0.00 2.71
332 333 2.538333 GCTGCGACACATGATCATTGTC 60.538 50.000 25.39 25.39 36.99 3.18
333 334 2.009051 TGCGACACATGATCATTGTCC 58.991 47.619 27.15 22.73 37.01 4.02
334 335 2.283298 GCGACACATGATCATTGTCCT 58.717 47.619 27.15 11.73 37.01 3.85
335 336 3.118811 TGCGACACATGATCATTGTCCTA 60.119 43.478 27.15 19.78 37.01 2.94
336 337 3.492383 GCGACACATGATCATTGTCCTAG 59.508 47.826 27.15 20.26 37.01 3.02
337 338 4.686972 CGACACATGATCATTGTCCTAGT 58.313 43.478 27.15 15.66 37.01 2.57
338 339 5.736207 GCGACACATGATCATTGTCCTAGTA 60.736 44.000 27.15 0.00 37.01 1.82
339 340 6.273071 CGACACATGATCATTGTCCTAGTAA 58.727 40.000 27.15 0.00 37.01 2.24
340 341 6.419116 CGACACATGATCATTGTCCTAGTAAG 59.581 42.308 27.15 16.72 37.01 2.34
341 342 7.423844 ACACATGATCATTGTCCTAGTAAGA 57.576 36.000 5.16 0.00 0.00 2.10
342 343 8.027524 ACACATGATCATTGTCCTAGTAAGAT 57.972 34.615 5.16 0.00 0.00 2.40
343 344 8.489489 ACACATGATCATTGTCCTAGTAAGATT 58.511 33.333 5.16 0.00 0.00 2.40
344 345 8.986847 CACATGATCATTGTCCTAGTAAGATTC 58.013 37.037 5.16 0.00 0.00 2.52
345 346 8.932610 ACATGATCATTGTCCTAGTAAGATTCT 58.067 33.333 5.16 0.00 0.00 2.40
346 347 9.205719 CATGATCATTGTCCTAGTAAGATTCTG 57.794 37.037 5.16 0.00 0.00 3.02
347 348 8.311395 TGATCATTGTCCTAGTAAGATTCTGT 57.689 34.615 0.00 0.00 0.00 3.41
348 349 9.421399 TGATCATTGTCCTAGTAAGATTCTGTA 57.579 33.333 0.00 0.00 0.00 2.74
351 352 9.256228 TCATTGTCCTAGTAAGATTCTGTAAGT 57.744 33.333 0.00 0.00 33.76 2.24
352 353 9.877178 CATTGTCCTAGTAAGATTCTGTAAGTT 57.123 33.333 0.00 0.00 33.76 2.66
358 359 9.303537 CCTAGTAAGATTCTGTAAGTTTACTGC 57.696 37.037 3.91 0.00 33.59 4.40
359 360 9.856488 CTAGTAAGATTCTGTAAGTTTACTGCA 57.144 33.333 3.91 0.00 33.59 4.41
361 362 8.989980 AGTAAGATTCTGTAAGTTTACTGCAAC 58.010 33.333 3.91 0.00 31.89 4.17
362 363 6.467723 AGATTCTGTAAGTTTACTGCAACG 57.532 37.500 3.91 0.00 34.77 4.10
363 364 6.220930 AGATTCTGTAAGTTTACTGCAACGA 58.779 36.000 0.00 0.00 34.77 3.85
364 365 6.874134 AGATTCTGTAAGTTTACTGCAACGAT 59.126 34.615 0.00 0.00 34.77 3.73
365 366 8.033038 AGATTCTGTAAGTTTACTGCAACGATA 58.967 33.333 0.00 0.00 34.77 2.92
366 367 7.949903 TTCTGTAAGTTTACTGCAACGATAA 57.050 32.000 0.00 0.00 34.77 1.75
367 368 8.542497 TTCTGTAAGTTTACTGCAACGATAAT 57.458 30.769 0.00 0.00 34.77 1.28
368 369 8.542497 TCTGTAAGTTTACTGCAACGATAATT 57.458 30.769 0.00 0.00 34.77 1.40
369 370 9.642327 TCTGTAAGTTTACTGCAACGATAATTA 57.358 29.630 0.00 0.00 34.77 1.40
374 375 8.276252 AGTTTACTGCAACGATAATTATTGGT 57.724 30.769 15.70 7.48 0.00 3.67
375 376 8.736244 AGTTTACTGCAACGATAATTATTGGTT 58.264 29.630 15.70 12.09 0.00 3.67
376 377 9.991388 GTTTACTGCAACGATAATTATTGGTTA 57.009 29.630 15.70 1.98 0.00 2.85
469 471 5.140747 AGAGTGGTCAACATAAGTCTCAC 57.859 43.478 0.00 0.00 0.00 3.51
474 476 5.531287 GTGGTCAACATAAGTCTCACCTTTT 59.469 40.000 0.00 0.00 0.00 2.27
477 479 5.181433 GTCAACATAAGTCTCACCTTTTCCC 59.819 44.000 0.00 0.00 0.00 3.97
478 480 5.073144 TCAACATAAGTCTCACCTTTTCCCT 59.927 40.000 0.00 0.00 0.00 4.20
479 481 5.167303 ACATAAGTCTCACCTTTTCCCTC 57.833 43.478 0.00 0.00 0.00 4.30
481 483 3.493767 AAGTCTCACCTTTTCCCTCAC 57.506 47.619 0.00 0.00 0.00 3.51
485 518 3.951680 GTCTCACCTTTTCCCTCACAAAA 59.048 43.478 0.00 0.00 0.00 2.44
518 551 8.148351 ACACAAGTCTCAGCTTTGTACTAATAA 58.852 33.333 0.56 0.00 0.00 1.40
533 566 5.892160 ACTAATAACTCGCTACTGACACA 57.108 39.130 0.00 0.00 0.00 3.72
589 624 4.531357 AGTACTAGTGCCCCTACATACA 57.469 45.455 5.39 0.00 0.00 2.29
649 684 1.898938 ATCGATTTGCATGCACGTTG 58.101 45.000 22.58 15.49 0.00 4.10
719 754 2.804572 CGTTGCATCAGGTAGCTAGCAT 60.805 50.000 24.01 7.76 0.00 3.79
720 755 2.538512 TGCATCAGGTAGCTAGCATG 57.461 50.000 24.01 19.20 0.00 4.06
721 756 1.155042 GCATCAGGTAGCTAGCATGC 58.845 55.000 23.99 23.99 0.00 4.06
722 757 1.541889 GCATCAGGTAGCTAGCATGCA 60.542 52.381 29.18 12.33 34.91 3.96
763 798 1.876322 CTAGCTTAGCCACTCATGCC 58.124 55.000 0.00 0.00 0.00 4.40
823 858 2.115480 TCCGGCCGAGAGATAGGG 59.885 66.667 30.73 6.27 0.00 3.53
885 924 2.983592 GCCACCTCCCACAAACCG 60.984 66.667 0.00 0.00 0.00 4.44
1023 1062 1.901650 CTTCGGCGAACAACTGGCTC 61.902 60.000 19.83 0.00 0.00 4.70
1049 1088 3.717294 GCTCTCCGGCCAAGGGAA 61.717 66.667 2.24 0.00 32.02 3.97
1280 1336 2.802816 CTCCAGCGCATGTATACCTTTC 59.197 50.000 11.47 0.00 0.00 2.62
1310 1366 3.154710 CTGATGTTGGATGGGATCATGG 58.845 50.000 0.00 0.00 32.98 3.66
1339 1395 0.835543 TTGGGCAATGAGGGGTTTGG 60.836 55.000 0.00 0.00 0.00 3.28
1448 1504 4.388499 GGACTTCCTCGGCGGCAA 62.388 66.667 10.53 0.00 0.00 4.52
1464 1520 0.733223 GCAACTCCTTCTCCGACGTC 60.733 60.000 5.18 5.18 0.00 4.34
1752 1808 1.070445 CTCGATGAGCATGGGGTCC 59.930 63.158 0.00 0.00 40.83 4.46
1806 1862 3.311110 GTGGGGACGGAGAGCACA 61.311 66.667 0.00 0.00 0.00 4.57
1928 1984 4.421948 CGAGGTGTAACAAGGTTAGCTAG 58.578 47.826 0.00 0.00 39.98 3.42
1940 1996 2.362717 GGTTAGCTAGCGTGGATCTTCT 59.637 50.000 9.55 0.00 0.00 2.85
2023 2079 1.760613 CGTTGCCCATTACTCCCTCTA 59.239 52.381 0.00 0.00 0.00 2.43
2024 2080 2.224066 CGTTGCCCATTACTCCCTCTAG 60.224 54.545 0.00 0.00 0.00 2.43
2025 2081 2.772515 GTTGCCCATTACTCCCTCTAGT 59.227 50.000 0.00 0.00 0.00 2.57
2026 2082 2.398588 TGCCCATTACTCCCTCTAGTG 58.601 52.381 0.00 0.00 0.00 2.74
2028 2084 3.243724 GCCCATTACTCCCTCTAGTGAT 58.756 50.000 0.00 0.00 0.00 3.06
2029 2085 3.259625 GCCCATTACTCCCTCTAGTGATC 59.740 52.174 0.00 0.00 0.00 2.92
2030 2086 4.746466 CCCATTACTCCCTCTAGTGATCT 58.254 47.826 0.00 0.00 0.00 2.75
2032 2088 6.315714 CCCATTACTCCCTCTAGTGATCTAA 58.684 44.000 0.00 0.00 0.00 2.10
2034 2090 7.256012 CCCATTACTCCCTCTAGTGATCTAAAC 60.256 44.444 0.00 0.00 0.00 2.01
2035 2091 6.939132 TTACTCCCTCTAGTGATCTAAACG 57.061 41.667 0.00 0.00 0.00 3.60
2036 2092 4.208746 ACTCCCTCTAGTGATCTAAACGG 58.791 47.826 0.00 0.00 0.00 4.44
2037 2093 4.208746 CTCCCTCTAGTGATCTAAACGGT 58.791 47.826 0.00 0.00 0.00 4.83
2038 2094 4.205587 TCCCTCTAGTGATCTAAACGGTC 58.794 47.826 0.00 0.00 0.00 4.79
2040 2096 4.645588 CCCTCTAGTGATCTAAACGGTCTT 59.354 45.833 0.00 0.00 0.00 3.01
2041 2097 5.826737 CCCTCTAGTGATCTAAACGGTCTTA 59.173 44.000 0.00 0.00 0.00 2.10
2043 2099 7.664731 CCCTCTAGTGATCTAAACGGTCTTATA 59.335 40.741 0.00 0.00 0.00 0.98
2057 2113 8.421673 AACGGTCTTATATTTCTTTACAGAGC 57.578 34.615 0.00 0.00 0.00 4.09
2058 2114 6.985059 ACGGTCTTATATTTCTTTACAGAGCC 59.015 38.462 0.00 0.00 0.00 4.70
2059 2115 6.984474 CGGTCTTATATTTCTTTACAGAGCCA 59.016 38.462 0.00 0.00 0.00 4.75
2060 2116 7.494625 CGGTCTTATATTTCTTTACAGAGCCAA 59.505 37.037 0.00 0.00 0.00 4.52
2080 2136 5.712446 GCCAATAGTTTCTTTCTTTCTCCCT 59.288 40.000 0.00 0.00 0.00 4.20
2137 2193 4.202441 CCATTTTTGAGGGATCGATCTGT 58.798 43.478 23.96 12.08 0.00 3.41
2144 2200 4.138290 TGAGGGATCGATCTGTCTAGAAC 58.862 47.826 23.96 4.81 36.32 3.01
2212 2269 6.662234 TCCTGTGTACACTACAATTAGCTAGT 59.338 38.462 25.60 0.00 40.93 2.57
2213 2270 7.177921 TCCTGTGTACACTACAATTAGCTAGTT 59.822 37.037 25.60 0.00 40.93 2.24
2232 2289 8.683615 AGCTAGTTACTTAGCAAAAACTTGTTT 58.316 29.630 13.33 0.00 46.69 2.83
2245 2326 8.487176 GCAAAAACTTGTTTAAATCATGATCGT 58.513 29.630 9.06 2.84 0.00 3.73
2283 2364 6.715344 AACAACATAATGCAATCAAAGCTG 57.285 33.333 0.00 0.00 0.00 4.24
2331 2417 4.023707 ACTTCACTTGTGCTATGCAACTTC 60.024 41.667 0.00 0.00 41.47 3.01
2381 2467 9.189156 ACACAATGCTTGTAATATAAGGTGATT 57.811 29.630 9.49 0.00 43.23 2.57
2485 2571 4.083565 GGGTTGTTTGGCCAATAGAAGTA 58.916 43.478 21.26 0.00 0.00 2.24
2543 2629 5.786574 CGCGTTATTTGTTGTTAATTCGACT 59.213 36.000 0.00 0.00 0.00 4.18
2582 2668 2.024319 GCGGTATGAGGCGCATCTC 61.024 63.158 23.78 14.85 38.44 2.75
2612 2698 1.847506 TTGCAGGAGAGAGGGGCAA 60.848 57.895 0.00 0.00 41.67 4.52
2640 2726 4.953579 GCAAGGGGAAACAAGGTATAATGA 59.046 41.667 0.00 0.00 0.00 2.57
2643 2729 6.848562 AGGGGAAACAAGGTATAATGAGAT 57.151 37.500 0.00 0.00 0.00 2.75
2644 2730 7.226059 AGGGGAAACAAGGTATAATGAGATT 57.774 36.000 0.00 0.00 0.00 2.40
2645 2731 7.062957 AGGGGAAACAAGGTATAATGAGATTG 58.937 38.462 0.00 0.00 0.00 2.67
2646 2732 6.833933 GGGGAAACAAGGTATAATGAGATTGT 59.166 38.462 0.00 0.00 32.55 2.71
2647 2733 7.342026 GGGGAAACAAGGTATAATGAGATTGTT 59.658 37.037 0.00 0.00 41.28 2.83
2648 2734 8.406297 GGGAAACAAGGTATAATGAGATTGTTC 58.594 37.037 2.02 0.00 39.28 3.18
2649 2735 8.956426 GGAAACAAGGTATAATGAGATTGTTCA 58.044 33.333 2.02 0.00 39.28 3.18
2661 2747 6.378661 TGAGATTGTTCATATATGAGGGGG 57.621 41.667 14.86 0.00 38.19 5.40
2662 2748 5.851693 TGAGATTGTTCATATATGAGGGGGT 59.148 40.000 14.86 3.10 38.19 4.95
2717 2803 8.584157 AGTTCAATCATTAGCTAGATCTCGATT 58.416 33.333 0.00 0.00 0.00 3.34
2747 2833 6.261118 GCAACTTCTATGGCATGTTCTTAAG 58.739 40.000 10.98 6.94 0.00 1.85
2754 2840 2.094597 TGGCATGTTCTTAAGCATGTGC 60.095 45.455 18.54 15.20 43.04 4.57
2777 2863 6.490040 TGCTAATTAGGTTTTCTGCTTTCTGT 59.510 34.615 14.28 0.00 0.00 3.41
2789 2875 2.223782 TGCTTTCTGTTGTGTCAATGCC 60.224 45.455 0.00 0.00 0.00 4.40
2791 2877 1.960417 TTCTGTTGTGTCAATGCCGA 58.040 45.000 0.00 0.00 0.00 5.54
2796 2882 0.396435 TTGTGTCAATGCCGACCTCT 59.604 50.000 0.00 0.00 34.88 3.69
2804 2890 1.617947 ATGCCGACCTCTCCTGGAAC 61.618 60.000 0.00 0.00 0.00 3.62
2814 2900 1.002430 TCTCCTGGAACATGACACTGC 59.998 52.381 0.00 0.00 38.20 4.40
2829 2915 5.490159 TGACACTGCAAATACTGATCATGA 58.510 37.500 0.00 0.00 0.00 3.07
2857 2943 9.474313 AATGCAGTTTATCTGGGTAAGAATTTA 57.526 29.630 0.00 0.00 43.78 1.40
2858 2944 8.506168 TGCAGTTTATCTGGGTAAGAATTTAG 57.494 34.615 0.00 0.00 43.78 1.85
2861 2947 9.110502 CAGTTTATCTGGGTAAGAATTTAGACC 57.889 37.037 0.00 0.00 38.79 3.85
2882 2968 3.616821 CCGATCTTTCGTGCAAGTATTCA 59.383 43.478 0.00 0.00 43.97 2.57
2888 2974 6.837992 TCTTTCGTGCAAGTATTCAATTACC 58.162 36.000 0.00 0.00 0.00 2.85
2895 2981 7.798516 CGTGCAAGTATTCAATTACCACATATC 59.201 37.037 0.00 0.00 0.00 1.63
2905 2995 7.293828 TCAATTACCACATATCTATGGGCAAA 58.706 34.615 2.50 0.00 40.59 3.68
2919 3009 3.429492 TGGGCAAATGTTCTGATGCTAA 58.571 40.909 0.82 0.00 38.79 3.09
2920 3010 3.831333 TGGGCAAATGTTCTGATGCTAAA 59.169 39.130 0.82 0.00 38.79 1.85
2921 3011 4.176271 GGGCAAATGTTCTGATGCTAAAC 58.824 43.478 0.82 0.00 38.79 2.01
2925 3019 5.125417 GCAAATGTTCTGATGCTAAACCCTA 59.875 40.000 0.00 0.00 35.93 3.53
2940 3034 7.931948 TGCTAAACCCTAGATAGCACTTTAATC 59.068 37.037 12.48 0.00 45.10 1.75
2944 3038 7.922699 ACCCTAGATAGCACTTTAATCTCTT 57.077 36.000 0.00 0.00 32.39 2.85
2947 3041 8.303876 CCCTAGATAGCACTTTAATCTCTTCTC 58.696 40.741 0.00 0.00 32.39 2.87
2984 3078 4.222124 AGGCGGTTATGACAAAGAAGAT 57.778 40.909 0.00 0.00 0.00 2.40
3241 3336 3.571590 AGGTAACAATTGCTTGACCCAA 58.428 40.909 5.05 0.00 41.41 4.12
3242 3337 4.159557 AGGTAACAATTGCTTGACCCAAT 58.840 39.130 5.05 0.00 41.41 3.16
3249 3344 2.380064 TGCTTGACCCAATCCAAGTT 57.620 45.000 0.00 0.00 41.21 2.66
3359 3454 5.048294 TGGATGCATATGATCATTCAACTGC 60.048 40.000 14.65 14.67 40.78 4.40
3389 3484 2.127383 GGTTTTTCTCGTGGCGCG 60.127 61.111 15.42 15.42 43.01 6.86
3437 3532 8.633075 GGTAACTATACTGTTTACATTGCGTA 57.367 34.615 3.39 0.00 32.36 4.42
3639 3734 6.073222 TCAGCTAGCTAAAGCACTTGTTTAAC 60.073 38.462 18.86 0.00 45.30 2.01
3654 3749 7.169308 CACTTGTTTAACTACTGTACTGGAGTG 59.831 40.741 17.51 6.61 0.00 3.51
3657 3752 5.717078 TTAACTACTGTACTGGAGTGGTG 57.283 43.478 17.51 0.48 35.52 4.17
3660 3755 0.681733 ACTGTACTGGAGTGGTGCTG 59.318 55.000 4.66 0.00 0.00 4.41
3661 3756 0.671781 CTGTACTGGAGTGGTGCTGC 60.672 60.000 0.00 0.00 35.97 5.25
3723 3821 9.642327 GAAGCCCTAATTATTTACTACTCTAGC 57.358 37.037 0.00 0.00 0.00 3.42
3724 3822 8.959676 AGCCCTAATTATTTACTACTCTAGCT 57.040 34.615 0.00 0.00 0.00 3.32
3725 3823 9.027202 AGCCCTAATTATTTACTACTCTAGCTC 57.973 37.037 0.00 0.00 0.00 4.09
3743 3841 2.413371 GCTCCAGCTCACGAAATTTCAC 60.413 50.000 17.99 2.16 38.21 3.18
3746 3844 4.832248 TCCAGCTCACGAAATTTCACTAT 58.168 39.130 17.99 0.00 0.00 2.12
3798 3896 3.393112 GCGTTCAAATGGCGCTTAA 57.607 47.368 7.64 0.00 46.55 1.85
3917 4015 1.485066 AGCGTCGGTTTGAATATCCCT 59.515 47.619 0.00 0.00 0.00 4.20
3925 4023 3.477530 GTTTGAATATCCCTAGCGCCTT 58.522 45.455 2.29 0.00 0.00 4.35
4036 4134 1.447838 CGCGTTATGCTCCACTGGT 60.448 57.895 0.00 0.00 43.27 4.00
4056 4154 0.677288 TGGTCAGTTGGGTAGACACG 59.323 55.000 0.00 0.00 34.04 4.49
4073 4171 2.474712 GCGCGTTGGTGAGCTAAC 59.525 61.111 8.43 0.00 33.45 2.34
4074 4172 3.023591 GCGCGTTGGTGAGCTAACC 62.024 63.158 14.12 14.12 40.94 2.85
4075 4173 2.726691 CGCGTTGGTGAGCTAACCG 61.727 63.158 15.96 4.90 43.73 4.44
4076 4174 2.388232 GCGTTGGTGAGCTAACCGG 61.388 63.158 15.96 8.45 43.73 5.28
4157 4255 3.140814 GCCATCAAGTTCCGGGGC 61.141 66.667 0.00 0.00 0.00 5.80
4520 4618 4.220413 CAGGACATGCAGGAGCTG 57.780 61.111 4.84 0.00 42.74 4.24
4565 4663 2.358737 AACTTCTTCCAGCCGGCG 60.359 61.111 23.20 16.10 0.00 6.46
4787 4885 3.535962 GAGCTCTCCCAGGGCTCG 61.536 72.222 9.61 0.00 42.03 5.03
4832 4930 1.012486 CGGACGGCTACTCCAACAAC 61.012 60.000 0.00 0.00 34.01 3.32
4878 4976 2.108362 GATCGGCCCCCTACGTTG 59.892 66.667 0.00 0.00 0.00 4.10
4900 4998 4.069304 GGTGTTACTAATCAACTGCCACA 58.931 43.478 0.00 0.00 0.00 4.17
4920 5018 3.925913 ACACTTGTTGTAACGTACGTTGT 59.074 39.130 36.87 23.70 36.32 3.32
4934 5032 1.545614 CGTTGTGCGCACGAGTAACT 61.546 55.000 33.22 0.00 0.00 2.24
4938 5036 0.942410 GTGCGCACGAGTAACTGGAA 60.942 55.000 26.77 0.00 0.00 3.53
5022 5120 3.844211 TCTGAAAGGTAGTAATGGCCAGT 59.156 43.478 13.05 12.48 0.00 4.00
5063 5161 3.119849 ACTTTGTAAATCACCATCGCTGC 60.120 43.478 0.00 0.00 0.00 5.25
5146 5244 5.450965 CCATGGCTACTTCATTCAATTGGTC 60.451 44.000 5.42 0.00 0.00 4.02
5147 5245 4.016444 TGGCTACTTCATTCAATTGGTCC 58.984 43.478 5.42 0.00 0.00 4.46
5151 5249 5.357878 GCTACTTCATTCAATTGGTCCATCA 59.642 40.000 5.42 0.00 0.00 3.07
5152 5250 6.040166 GCTACTTCATTCAATTGGTCCATCAT 59.960 38.462 5.42 0.00 0.00 2.45
5153 5251 6.461110 ACTTCATTCAATTGGTCCATCATC 57.539 37.500 5.42 0.00 0.00 2.92
5154 5252 6.192773 ACTTCATTCAATTGGTCCATCATCT 58.807 36.000 5.42 0.00 0.00 2.90
5155 5253 6.096423 ACTTCATTCAATTGGTCCATCATCTG 59.904 38.462 5.42 0.00 0.00 2.90
5159 5257 3.266513 TCAATTGGTCCATCATCTGGTCA 59.733 43.478 5.42 0.00 46.08 4.02
5176 5274 3.276857 GGTCATCAGATTGAGCACATGT 58.723 45.455 0.00 0.00 42.34 3.21
5177 5275 4.080975 TGGTCATCAGATTGAGCACATGTA 60.081 41.667 0.00 0.00 46.14 2.29
5178 5276 4.510711 GGTCATCAGATTGAGCACATGTAG 59.489 45.833 0.00 0.00 42.34 2.74
5179 5277 5.114780 GTCATCAGATTGAGCACATGTAGT 58.885 41.667 0.00 0.00 0.00 2.73
5180 5278 6.276091 GTCATCAGATTGAGCACATGTAGTA 58.724 40.000 0.00 0.00 0.00 1.82
5191 5289 9.755122 TTGAGCACATGTAGTATAGGAGTATAT 57.245 33.333 0.00 0.00 0.00 0.86
5248 5356 2.865551 CCATGCATTTTACGGCCAAATC 59.134 45.455 2.24 0.00 0.00 2.17
5259 5367 1.136147 GCCAAATCGAGCAGTGCAG 59.864 57.895 19.20 11.12 0.00 4.41
5262 5370 0.179197 CAAATCGAGCAGTGCAGCTG 60.179 55.000 19.20 10.11 46.75 4.24
5283 5391 8.219105 CAGCTGAAAGATTAAAAAGCATTGAAC 58.781 33.333 8.42 0.00 34.07 3.18
5289 5397 9.762933 AAAGATTAAAAAGCATTGAACTAAGCA 57.237 25.926 0.00 0.00 0.00 3.91
5290 5398 8.748380 AGATTAAAAAGCATTGAACTAAGCAC 57.252 30.769 0.00 0.00 0.00 4.40
5291 5399 8.359642 AGATTAAAAAGCATTGAACTAAGCACA 58.640 29.630 0.00 0.00 0.00 4.57
5292 5400 7.928908 TTAAAAAGCATTGAACTAAGCACAG 57.071 32.000 0.00 0.00 0.00 3.66
5293 5401 4.510038 AAAGCATTGAACTAAGCACAGG 57.490 40.909 0.00 0.00 0.00 4.00
5294 5402 3.423539 AGCATTGAACTAAGCACAGGA 57.576 42.857 0.00 0.00 0.00 3.86
5295 5403 3.077359 AGCATTGAACTAAGCACAGGAC 58.923 45.455 0.00 0.00 0.00 3.85
5296 5404 2.813754 GCATTGAACTAAGCACAGGACA 59.186 45.455 0.00 0.00 0.00 4.02
5297 5405 3.253188 GCATTGAACTAAGCACAGGACAA 59.747 43.478 0.00 0.00 0.00 3.18
5298 5406 4.614535 GCATTGAACTAAGCACAGGACAAG 60.615 45.833 0.00 0.00 0.00 3.16
5299 5407 3.838244 TGAACTAAGCACAGGACAAGT 57.162 42.857 0.00 0.00 0.00 3.16
5300 5408 4.948341 TGAACTAAGCACAGGACAAGTA 57.052 40.909 0.00 0.00 0.00 2.24
5301 5409 4.628074 TGAACTAAGCACAGGACAAGTAC 58.372 43.478 0.00 0.00 0.00 2.73
5302 5410 3.299340 ACTAAGCACAGGACAAGTACG 57.701 47.619 0.00 0.00 0.00 3.67
5303 5411 2.626743 ACTAAGCACAGGACAAGTACGT 59.373 45.455 0.00 0.00 0.00 3.57
5304 5412 3.822735 ACTAAGCACAGGACAAGTACGTA 59.177 43.478 0.00 0.00 0.00 3.57
5305 5413 3.738830 AAGCACAGGACAAGTACGTAA 57.261 42.857 0.00 0.00 0.00 3.18
5307 5415 2.029290 AGCACAGGACAAGTACGTAAGG 60.029 50.000 0.00 0.00 46.39 2.69
5308 5416 2.288640 GCACAGGACAAGTACGTAAGGT 60.289 50.000 0.00 0.00 46.39 3.50
5309 5417 3.314553 CACAGGACAAGTACGTAAGGTG 58.685 50.000 0.00 0.00 46.39 4.00
5310 5418 2.961062 ACAGGACAAGTACGTAAGGTGT 59.039 45.455 0.00 1.49 46.39 4.16
5341 5449 1.464429 CGATCGACTTGGAGAACGCG 61.464 60.000 10.26 3.53 0.00 6.01
5366 5474 1.002142 CACATGCATGCGGTTATGGAG 60.002 52.381 26.53 4.86 31.79 3.86
5426 5534 2.554893 GGCGAATTGGTACCACTTTTGA 59.445 45.455 16.04 0.00 0.00 2.69
5519 5627 2.045926 ATGCTGGAACTGACCGCC 60.046 61.111 0.00 0.00 0.00 6.13
5745 5853 0.318762 AAAGCAGTGAGGAGACGTCC 59.681 55.000 13.01 3.55 44.33 4.79
5768 5876 0.528466 CTGCCGTACATGCACTCGAT 60.528 55.000 3.10 0.00 34.46 3.59
5832 5940 5.339778 GCTAGGTTTAGGGTTAGGGTTTCAT 60.340 44.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.674068 TGCAACGGGATATAAAATATGCTAATA 57.326 29.630 0.00 0.00 32.74 0.98
17 18 8.574251 TGCAACGGGATATAAAATATGCTAAT 57.426 30.769 0.00 0.00 32.74 1.73
18 19 7.987750 TGCAACGGGATATAAAATATGCTAA 57.012 32.000 0.00 0.00 32.74 3.09
19 20 7.445707 TGTTGCAACGGGATATAAAATATGCTA 59.554 33.333 23.79 0.00 32.74 3.49
20 21 6.264292 TGTTGCAACGGGATATAAAATATGCT 59.736 34.615 23.79 0.00 32.74 3.79
21 22 6.362283 GTGTTGCAACGGGATATAAAATATGC 59.638 38.462 23.79 0.00 0.00 3.14
22 23 7.378461 GTGTGTTGCAACGGGATATAAAATATG 59.622 37.037 23.79 0.00 0.00 1.78
23 24 7.422399 GTGTGTTGCAACGGGATATAAAATAT 58.578 34.615 23.79 0.00 0.00 1.28
24 25 6.183360 GGTGTGTTGCAACGGGATATAAAATA 60.183 38.462 23.79 0.00 0.00 1.40
25 26 5.393678 GGTGTGTTGCAACGGGATATAAAAT 60.394 40.000 23.79 0.00 0.00 1.82
26 27 4.082679 GGTGTGTTGCAACGGGATATAAAA 60.083 41.667 23.79 0.00 0.00 1.52
27 28 3.440872 GGTGTGTTGCAACGGGATATAAA 59.559 43.478 23.79 0.57 0.00 1.40
28 29 3.011119 GGTGTGTTGCAACGGGATATAA 58.989 45.455 23.79 1.33 0.00 0.98
29 30 2.027100 TGGTGTGTTGCAACGGGATATA 60.027 45.455 23.79 2.11 37.70 0.86
30 31 1.271652 TGGTGTGTTGCAACGGGATAT 60.272 47.619 23.79 0.00 37.70 1.63
31 32 0.108774 TGGTGTGTTGCAACGGGATA 59.891 50.000 23.79 8.17 37.70 2.59
32 33 1.152860 TGGTGTGTTGCAACGGGAT 60.153 52.632 23.79 0.00 37.70 3.85
33 34 1.821759 CTGGTGTGTTGCAACGGGA 60.822 57.895 23.79 7.92 37.52 5.14
34 35 2.721231 CTGGTGTGTTGCAACGGG 59.279 61.111 23.79 6.92 37.52 5.28
35 36 2.026014 GCTGGTGTGTTGCAACGG 59.974 61.111 23.79 6.77 43.94 4.44
36 37 0.248990 AATGCTGGTGTGTTGCAACG 60.249 50.000 23.79 10.03 40.24 4.10
37 38 1.210870 CAATGCTGGTGTGTTGCAAC 58.789 50.000 22.83 22.83 40.24 4.17
38 39 0.822811 ACAATGCTGGTGTGTTGCAA 59.177 45.000 0.00 0.00 40.24 4.08
39 40 0.102663 CACAATGCTGGTGTGTTGCA 59.897 50.000 6.77 0.00 41.22 4.08
40 41 1.216941 GCACAATGCTGGTGTGTTGC 61.217 55.000 13.88 0.00 46.58 4.17
41 42 2.889578 GCACAATGCTGGTGTGTTG 58.110 52.632 13.88 0.00 46.58 3.33
51 52 8.932791 TCTTTTTAAGTAGTACTAGCACAATGC 58.067 33.333 1.87 0.00 45.46 3.56
81 82 9.581099 GAAAGAAAAGTGAAACATGAAACCTTA 57.419 29.630 0.00 0.00 41.43 2.69
82 83 8.314021 AGAAAGAAAAGTGAAACATGAAACCTT 58.686 29.630 0.00 0.00 41.43 3.50
83 84 7.761249 CAGAAAGAAAAGTGAAACATGAAACCT 59.239 33.333 0.00 0.00 41.43 3.50
84 85 7.464577 GCAGAAAGAAAAGTGAAACATGAAACC 60.465 37.037 0.00 0.00 41.43 3.27
85 86 7.394099 GCAGAAAGAAAAGTGAAACATGAAAC 58.606 34.615 0.00 0.00 41.43 2.78
86 87 6.534793 GGCAGAAAGAAAAGTGAAACATGAAA 59.465 34.615 0.00 0.00 41.43 2.69
87 88 6.042143 GGCAGAAAGAAAAGTGAAACATGAA 58.958 36.000 0.00 0.00 41.43 2.57
88 89 5.126869 TGGCAGAAAGAAAAGTGAAACATGA 59.873 36.000 0.00 0.00 41.43 3.07
89 90 5.232838 GTGGCAGAAAGAAAAGTGAAACATG 59.767 40.000 0.00 0.00 41.43 3.21
90 91 5.351458 GTGGCAGAAAGAAAAGTGAAACAT 58.649 37.500 0.00 0.00 41.43 2.71
91 92 4.381505 GGTGGCAGAAAGAAAAGTGAAACA 60.382 41.667 0.00 0.00 41.43 2.83
92 93 4.112634 GGTGGCAGAAAGAAAAGTGAAAC 58.887 43.478 0.00 0.00 0.00 2.78
93 94 3.132111 GGGTGGCAGAAAGAAAAGTGAAA 59.868 43.478 0.00 0.00 0.00 2.69
94 95 2.693074 GGGTGGCAGAAAGAAAAGTGAA 59.307 45.455 0.00 0.00 0.00 3.18
95 96 2.091885 AGGGTGGCAGAAAGAAAAGTGA 60.092 45.455 0.00 0.00 0.00 3.41
96 97 2.310538 AGGGTGGCAGAAAGAAAAGTG 58.689 47.619 0.00 0.00 0.00 3.16
97 98 2.755952 AGGGTGGCAGAAAGAAAAGT 57.244 45.000 0.00 0.00 0.00 2.66
98 99 3.550842 CGAAAGGGTGGCAGAAAGAAAAG 60.551 47.826 0.00 0.00 0.00 2.27
99 100 2.360801 CGAAAGGGTGGCAGAAAGAAAA 59.639 45.455 0.00 0.00 0.00 2.29
100 101 1.953686 CGAAAGGGTGGCAGAAAGAAA 59.046 47.619 0.00 0.00 0.00 2.52
101 102 1.133915 ACGAAAGGGTGGCAGAAAGAA 60.134 47.619 0.00 0.00 0.00 2.52
102 103 0.472471 ACGAAAGGGTGGCAGAAAGA 59.528 50.000 0.00 0.00 0.00 2.52
103 104 0.875059 GACGAAAGGGTGGCAGAAAG 59.125 55.000 0.00 0.00 0.00 2.62
104 105 0.536460 GGACGAAAGGGTGGCAGAAA 60.536 55.000 0.00 0.00 0.00 2.52
105 106 1.072505 GGACGAAAGGGTGGCAGAA 59.927 57.895 0.00 0.00 0.00 3.02
106 107 1.701031 TTGGACGAAAGGGTGGCAGA 61.701 55.000 0.00 0.00 0.00 4.26
107 108 1.228124 TTGGACGAAAGGGTGGCAG 60.228 57.895 0.00 0.00 0.00 4.85
108 109 1.527380 GTTGGACGAAAGGGTGGCA 60.527 57.895 0.00 0.00 0.00 4.92
109 110 2.265904 GGTTGGACGAAAGGGTGGC 61.266 63.158 0.00 0.00 0.00 5.01
110 111 0.179001 AAGGTTGGACGAAAGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
111 112 1.687563 AAAGGTTGGACGAAAGGGTG 58.312 50.000 0.00 0.00 0.00 4.61
112 113 2.447408 AAAAGGTTGGACGAAAGGGT 57.553 45.000 0.00 0.00 0.00 4.34
209 210 9.308000 CCTGCCCATGATTTACCTTATATTTTA 57.692 33.333 0.00 0.00 0.00 1.52
210 211 8.010105 TCCTGCCCATGATTTACCTTATATTTT 58.990 33.333 0.00 0.00 0.00 1.82
211 212 7.534852 TCCTGCCCATGATTTACCTTATATTT 58.465 34.615 0.00 0.00 0.00 1.40
212 213 7.102518 TCCTGCCCATGATTTACCTTATATT 57.897 36.000 0.00 0.00 0.00 1.28
213 214 6.718593 TCCTGCCCATGATTTACCTTATAT 57.281 37.500 0.00 0.00 0.00 0.86
214 215 6.523035 TTCCTGCCCATGATTTACCTTATA 57.477 37.500 0.00 0.00 0.00 0.98
215 216 5.402054 TTCCTGCCCATGATTTACCTTAT 57.598 39.130 0.00 0.00 0.00 1.73
216 217 4.871871 TTCCTGCCCATGATTTACCTTA 57.128 40.909 0.00 0.00 0.00 2.69
217 218 3.756082 TTCCTGCCCATGATTTACCTT 57.244 42.857 0.00 0.00 0.00 3.50
218 219 3.962718 CAATTCCTGCCCATGATTTACCT 59.037 43.478 0.00 0.00 0.00 3.08
219 220 3.960102 TCAATTCCTGCCCATGATTTACC 59.040 43.478 0.00 0.00 0.00 2.85
220 221 5.796424 ATCAATTCCTGCCCATGATTTAC 57.204 39.130 0.00 0.00 0.00 2.01
221 222 7.344093 TGTTTATCAATTCCTGCCCATGATTTA 59.656 33.333 0.00 0.00 33.17 1.40
222 223 6.156602 TGTTTATCAATTCCTGCCCATGATTT 59.843 34.615 0.00 0.00 33.17 2.17
223 224 5.662208 TGTTTATCAATTCCTGCCCATGATT 59.338 36.000 0.00 0.00 33.17 2.57
224 225 5.210430 TGTTTATCAATTCCTGCCCATGAT 58.790 37.500 0.00 0.00 35.15 2.45
225 226 4.608269 TGTTTATCAATTCCTGCCCATGA 58.392 39.130 0.00 0.00 0.00 3.07
226 227 5.540400 ATGTTTATCAATTCCTGCCCATG 57.460 39.130 0.00 0.00 0.00 3.66
227 228 6.564557 AAATGTTTATCAATTCCTGCCCAT 57.435 33.333 0.00 0.00 0.00 4.00
228 229 7.673641 ATAAATGTTTATCAATTCCTGCCCA 57.326 32.000 0.00 0.00 0.00 5.36
229 230 8.962884 AAATAAATGTTTATCAATTCCTGCCC 57.037 30.769 0.00 0.00 32.46 5.36
253 254 8.822855 CCTGCTCATATTAATACGTTTGTGTAA 58.177 33.333 0.00 0.00 0.00 2.41
254 255 7.982919 ACCTGCTCATATTAATACGTTTGTGTA 59.017 33.333 0.00 0.00 0.00 2.90
255 256 6.821665 ACCTGCTCATATTAATACGTTTGTGT 59.178 34.615 0.00 0.00 0.00 3.72
256 257 7.246674 ACCTGCTCATATTAATACGTTTGTG 57.753 36.000 0.00 0.00 0.00 3.33
257 258 8.951787 TTACCTGCTCATATTAATACGTTTGT 57.048 30.769 0.00 0.00 0.00 2.83
258 259 9.864034 CTTTACCTGCTCATATTAATACGTTTG 57.136 33.333 0.00 0.00 0.00 2.93
259 260 9.052759 CCTTTACCTGCTCATATTAATACGTTT 57.947 33.333 0.00 0.00 0.00 3.60
260 261 8.208903 ACCTTTACCTGCTCATATTAATACGTT 58.791 33.333 0.00 0.00 0.00 3.99
261 262 7.732996 ACCTTTACCTGCTCATATTAATACGT 58.267 34.615 0.00 0.00 0.00 3.57
262 263 9.701098 TTACCTTTACCTGCTCATATTAATACG 57.299 33.333 0.00 0.00 0.00 3.06
271 272 8.934697 TCTAATATGTTACCTTTACCTGCTCAT 58.065 33.333 0.00 0.00 0.00 2.90
272 273 8.313944 TCTAATATGTTACCTTTACCTGCTCA 57.686 34.615 0.00 0.00 0.00 4.26
273 274 9.780186 ATTCTAATATGTTACCTTTACCTGCTC 57.220 33.333 0.00 0.00 0.00 4.26
292 293 8.883731 GTCGCAGCATGGTATAAATATTCTAAT 58.116 33.333 0.00 0.00 35.86 1.73
293 294 7.875554 TGTCGCAGCATGGTATAAATATTCTAA 59.124 33.333 0.00 0.00 35.86 2.10
294 295 7.330946 GTGTCGCAGCATGGTATAAATATTCTA 59.669 37.037 0.00 0.00 35.86 2.10
295 296 6.147821 GTGTCGCAGCATGGTATAAATATTCT 59.852 38.462 0.00 0.00 35.86 2.40
296 297 6.073276 TGTGTCGCAGCATGGTATAAATATTC 60.073 38.462 0.00 0.00 35.86 1.75
297 298 5.762711 TGTGTCGCAGCATGGTATAAATATT 59.237 36.000 0.00 0.00 35.86 1.28
298 299 5.304778 TGTGTCGCAGCATGGTATAAATAT 58.695 37.500 0.00 0.00 35.86 1.28
299 300 4.698575 TGTGTCGCAGCATGGTATAAATA 58.301 39.130 0.00 0.00 35.86 1.40
300 301 3.540617 TGTGTCGCAGCATGGTATAAAT 58.459 40.909 0.00 0.00 35.86 1.40
301 302 2.979240 TGTGTCGCAGCATGGTATAAA 58.021 42.857 0.00 0.00 35.86 1.40
302 303 2.682155 TGTGTCGCAGCATGGTATAA 57.318 45.000 0.00 0.00 35.86 0.98
303 304 2.102252 TCATGTGTCGCAGCATGGTATA 59.898 45.455 0.00 0.00 41.83 1.47
304 305 1.134431 TCATGTGTCGCAGCATGGTAT 60.134 47.619 0.00 0.00 41.83 2.73
305 306 0.248843 TCATGTGTCGCAGCATGGTA 59.751 50.000 0.00 0.00 41.83 3.25
306 307 0.393402 ATCATGTGTCGCAGCATGGT 60.393 50.000 11.12 0.00 41.83 3.55
307 308 0.306840 GATCATGTGTCGCAGCATGG 59.693 55.000 11.12 0.00 41.83 3.66
308 309 1.011333 TGATCATGTGTCGCAGCATG 58.989 50.000 0.00 0.00 42.62 4.06
309 310 1.963172 ATGATCATGTGTCGCAGCAT 58.037 45.000 7.59 0.00 0.00 3.79
310 311 1.399089 CAATGATCATGTGTCGCAGCA 59.601 47.619 9.46 0.00 0.00 4.41
311 312 1.399440 ACAATGATCATGTGTCGCAGC 59.601 47.619 9.46 0.00 0.00 5.25
312 313 2.031314 GGACAATGATCATGTGTCGCAG 59.969 50.000 26.70 10.27 42.11 5.18
313 314 2.009051 GGACAATGATCATGTGTCGCA 58.991 47.619 26.70 0.00 42.11 5.10
314 315 2.283298 AGGACAATGATCATGTGTCGC 58.717 47.619 26.70 22.37 42.11 5.19
315 316 4.686972 ACTAGGACAATGATCATGTGTCG 58.313 43.478 26.70 20.71 42.11 4.35
316 317 7.492524 TCTTACTAGGACAATGATCATGTGTC 58.507 38.462 26.32 26.32 40.77 3.67
317 318 7.423844 TCTTACTAGGACAATGATCATGTGT 57.576 36.000 9.46 14.80 0.00 3.72
318 319 8.899427 AATCTTACTAGGACAATGATCATGTG 57.101 34.615 9.46 11.84 0.00 3.21
319 320 8.932610 AGAATCTTACTAGGACAATGATCATGT 58.067 33.333 9.46 9.55 0.00 3.21
320 321 9.205719 CAGAATCTTACTAGGACAATGATCATG 57.794 37.037 9.46 6.30 0.00 3.07
321 322 8.932610 ACAGAATCTTACTAGGACAATGATCAT 58.067 33.333 1.18 1.18 0.00 2.45
322 323 8.311395 ACAGAATCTTACTAGGACAATGATCA 57.689 34.615 0.00 0.00 0.00 2.92
325 326 9.256228 ACTTACAGAATCTTACTAGGACAATGA 57.744 33.333 0.00 0.00 0.00 2.57
326 327 9.877178 AACTTACAGAATCTTACTAGGACAATG 57.123 33.333 0.00 0.00 0.00 2.82
332 333 9.303537 GCAGTAAACTTACAGAATCTTACTAGG 57.696 37.037 0.00 0.00 36.12 3.02
333 334 9.856488 TGCAGTAAACTTACAGAATCTTACTAG 57.144 33.333 2.63 0.00 36.12 2.57
335 336 8.989980 GTTGCAGTAAACTTACAGAATCTTACT 58.010 33.333 2.63 0.00 36.12 2.24
336 337 7.950496 CGTTGCAGTAAACTTACAGAATCTTAC 59.050 37.037 2.63 0.00 36.12 2.34
337 338 7.868922 TCGTTGCAGTAAACTTACAGAATCTTA 59.131 33.333 2.63 0.00 36.12 2.10
338 339 6.704493 TCGTTGCAGTAAACTTACAGAATCTT 59.296 34.615 2.63 0.00 36.12 2.40
339 340 6.220930 TCGTTGCAGTAAACTTACAGAATCT 58.779 36.000 2.63 0.00 36.12 2.40
340 341 6.462073 TCGTTGCAGTAAACTTACAGAATC 57.538 37.500 2.63 0.00 36.12 2.52
341 342 8.542497 TTATCGTTGCAGTAAACTTACAGAAT 57.458 30.769 2.63 0.00 36.12 2.40
342 343 7.949903 TTATCGTTGCAGTAAACTTACAGAA 57.050 32.000 2.63 0.00 36.12 3.02
343 344 8.542497 AATTATCGTTGCAGTAAACTTACAGA 57.458 30.769 2.63 0.00 36.12 3.41
348 349 8.736244 ACCAATAATTATCGTTGCAGTAAACTT 58.264 29.630 0.00 0.00 0.00 2.66
349 350 8.276252 ACCAATAATTATCGTTGCAGTAAACT 57.724 30.769 0.00 0.00 0.00 2.66
350 351 8.905103 AACCAATAATTATCGTTGCAGTAAAC 57.095 30.769 0.00 0.00 0.00 2.01
382 383 8.609176 GCAATTTCCATCGATTTGTTAGTAGTA 58.391 33.333 0.00 0.00 0.00 1.82
383 384 7.472543 GCAATTTCCATCGATTTGTTAGTAGT 58.527 34.615 0.00 0.00 0.00 2.73
384 385 6.628856 CGCAATTTCCATCGATTTGTTAGTAG 59.371 38.462 0.00 0.00 0.00 2.57
485 518 7.547227 ACAAAGCTGAGACTTGTGTTTAATTT 58.453 30.769 0.00 0.00 0.00 1.82
488 521 6.821665 AGTACAAAGCTGAGACTTGTGTTTAA 59.178 34.615 10.33 0.00 0.00 1.52
489 522 6.346096 AGTACAAAGCTGAGACTTGTGTTTA 58.654 36.000 10.33 0.00 0.00 2.01
495 528 8.764524 AGTTATTAGTACAAAGCTGAGACTTG 57.235 34.615 0.00 0.00 0.00 3.16
518 551 1.893137 TCCATTGTGTCAGTAGCGAGT 59.107 47.619 0.00 0.00 0.00 4.18
570 605 3.640029 GCTTGTATGTAGGGGCACTAGTA 59.360 47.826 0.00 0.00 30.77 1.82
572 607 2.545952 CGCTTGTATGTAGGGGCACTAG 60.546 54.545 0.00 0.00 30.77 2.57
573 608 1.411246 CGCTTGTATGTAGGGGCACTA 59.589 52.381 0.00 0.00 0.00 2.74
574 609 0.178068 CGCTTGTATGTAGGGGCACT 59.822 55.000 0.00 0.00 0.00 4.40
575 610 0.177141 TCGCTTGTATGTAGGGGCAC 59.823 55.000 0.00 0.00 0.00 5.01
576 611 0.906066 TTCGCTTGTATGTAGGGGCA 59.094 50.000 0.00 0.00 0.00 5.36
577 612 2.143925 GATTCGCTTGTATGTAGGGGC 58.856 52.381 0.00 0.00 0.00 5.80
589 624 2.496070 TGCACCTACAGTAGATTCGCTT 59.504 45.455 9.38 0.00 0.00 4.68
649 684 7.761249 CCCAGTATTGAAAACATTCTGAATTCC 59.239 37.037 2.27 0.00 0.00 3.01
720 755 0.461961 CTCCTAGTGGGTGCTACTGC 59.538 60.000 0.00 0.00 40.20 4.40
721 756 1.115467 CCTCCTAGTGGGTGCTACTG 58.885 60.000 0.00 0.00 36.25 2.74
722 757 1.008403 TCCTCCTAGTGGGTGCTACT 58.992 55.000 0.00 0.00 36.25 2.57
763 798 1.343465 CAGGGCCCTGTACTTATACCG 59.657 57.143 39.52 13.26 39.10 4.02
823 858 1.802337 GACAGGCCGGGGAAAACAAC 61.802 60.000 8.08 0.00 0.00 3.32
885 924 1.020437 GGGCAGTCAAAGCTAGCATC 58.980 55.000 18.83 2.16 0.00 3.91
1094 1133 1.725665 CCATAGAAGTCGCCGTCGA 59.274 57.895 0.00 0.00 43.28 4.20
1096 1135 1.591863 GGCCATAGAAGTCGCCGTC 60.592 63.158 0.00 0.00 0.00 4.79
1097 1136 2.058595 AGGCCATAGAAGTCGCCGT 61.059 57.895 5.01 0.00 46.36 5.68
1237 1291 3.369147 GCTCAAGTAGTACATGCACAGTG 59.631 47.826 2.52 0.00 0.00 3.66
1280 1336 4.316645 CCATCCAACATCAGATGCTAGAG 58.683 47.826 10.59 0.00 38.85 2.43
1310 1366 2.689983 CTCATTGCCCAATCTGTAACCC 59.310 50.000 0.00 0.00 0.00 4.11
1339 1395 4.509737 GGAGCCGCCGTGGTAGTC 62.510 72.222 0.00 0.00 41.21 2.59
1440 1496 2.815647 GAGAAGGAGTTGCCGCCG 60.816 66.667 0.00 0.00 43.43 6.46
1448 1504 0.961358 CTGGACGTCGGAGAAGGAGT 60.961 60.000 9.92 0.00 41.22 3.85
1480 1536 1.313812 CCGGACGAGAACAGGTAGCT 61.314 60.000 0.00 0.00 0.00 3.32
1797 1853 1.064946 CTCCGACGATGTGCTCTCC 59.935 63.158 0.00 0.00 0.00 3.71
1806 1862 1.153823 CCGCTTGTTCTCCGACGAT 60.154 57.895 0.00 0.00 0.00 3.73
1887 1943 1.067212 CGGTAGATCGAGGTCCTTTGG 59.933 57.143 0.00 0.00 0.00 3.28
1928 1984 0.729690 GAAGCCAAGAAGATCCACGC 59.270 55.000 0.00 0.00 0.00 5.34
1940 1996 1.352083 AGGTCACTAGCAGAAGCCAA 58.648 50.000 0.00 0.00 43.56 4.52
2032 2088 7.494952 GGCTCTGTAAAGAAATATAAGACCGTT 59.505 37.037 0.00 0.00 0.00 4.44
2034 2090 6.984474 TGGCTCTGTAAAGAAATATAAGACCG 59.016 38.462 0.00 0.00 0.00 4.79
2035 2091 8.732746 TTGGCTCTGTAAAGAAATATAAGACC 57.267 34.615 0.00 0.00 0.00 3.85
2043 2099 8.870075 AGAAACTATTGGCTCTGTAAAGAAAT 57.130 30.769 0.00 0.00 0.00 2.17
2045 2101 8.691661 AAAGAAACTATTGGCTCTGTAAAGAA 57.308 30.769 0.00 0.00 0.00 2.52
2046 2102 8.157476 AGAAAGAAACTATTGGCTCTGTAAAGA 58.843 33.333 0.00 0.00 0.00 2.52
2047 2103 8.329203 AGAAAGAAACTATTGGCTCTGTAAAG 57.671 34.615 0.00 0.00 0.00 1.85
2049 2105 8.691661 AAAGAAAGAAACTATTGGCTCTGTAA 57.308 30.769 0.00 0.00 0.00 2.41
2050 2106 8.157476 AGAAAGAAAGAAACTATTGGCTCTGTA 58.843 33.333 0.00 0.00 0.00 2.74
2051 2107 7.001073 AGAAAGAAAGAAACTATTGGCTCTGT 58.999 34.615 0.00 0.00 0.00 3.41
2052 2108 7.361628 GGAGAAAGAAAGAAACTATTGGCTCTG 60.362 40.741 0.00 0.00 0.00 3.35
2055 2111 5.712446 GGGAGAAAGAAAGAAACTATTGGCT 59.288 40.000 0.00 0.00 0.00 4.75
2056 2112 5.712446 AGGGAGAAAGAAAGAAACTATTGGC 59.288 40.000 0.00 0.00 0.00 4.52
2057 2113 7.171653 AGAGGGAGAAAGAAAGAAACTATTGG 58.828 38.462 0.00 0.00 0.00 3.16
2058 2114 7.064016 CGAGAGGGAGAAAGAAAGAAACTATTG 59.936 40.741 0.00 0.00 0.00 1.90
2059 2115 7.038941 TCGAGAGGGAGAAAGAAAGAAACTATT 60.039 37.037 0.00 0.00 0.00 1.73
2060 2116 6.437793 TCGAGAGGGAGAAAGAAAGAAACTAT 59.562 38.462 0.00 0.00 0.00 2.12
2099 2155 6.420604 TCAAAAATGGCATCGAAAAGAAGAAC 59.579 34.615 0.00 0.00 0.00 3.01
2137 2193 2.616960 TCTAACCGTACGCGTTCTAGA 58.383 47.619 20.78 12.90 36.15 2.43
2144 2200 1.063174 AGCTACTTCTAACCGTACGCG 59.937 52.381 10.49 3.53 37.95 6.01
2218 2275 8.702438 CGATCATGATTTAAACAAGTTTTTGCT 58.298 29.630 10.14 0.00 37.85 3.91
2219 2276 8.487176 ACGATCATGATTTAAACAAGTTTTTGC 58.513 29.630 10.14 0.00 37.85 3.68
2331 2417 3.610911 CCTAAAGGCTAAGTGAAGTGGG 58.389 50.000 0.00 0.00 0.00 4.61
2389 2475 7.013464 AGTCAACTATAGTACCACTAGTGCATC 59.987 40.741 17.86 8.99 33.66 3.91
2429 2515 8.102800 TCATGGAAATTCTATGCATATGTGTC 57.897 34.615 13.54 1.32 35.61 3.67
2442 2528 4.384056 CCTACGCAGATCATGGAAATTCT 58.616 43.478 0.00 0.00 0.00 2.40
2543 2629 1.134007 CCTGTCCATCTATGCCTGCAA 60.134 52.381 0.00 0.00 0.00 4.08
2582 2668 2.237143 TCTCCTGCAACTATTGTCCCAG 59.763 50.000 0.00 1.86 0.00 4.45
2612 2698 1.318576 CTTGTTTCCCCTTGCGAGTT 58.681 50.000 0.00 0.00 0.00 3.01
2640 2726 6.103205 ACAACCCCCTCATATATGAACAATCT 59.897 38.462 16.08 0.00 36.18 2.40
2643 2729 5.725551 ACAACCCCCTCATATATGAACAA 57.274 39.130 16.08 0.00 36.18 2.83
2644 2730 5.192722 TGAACAACCCCCTCATATATGAACA 59.807 40.000 16.08 0.00 36.18 3.18
2645 2731 5.690865 TGAACAACCCCCTCATATATGAAC 58.309 41.667 16.08 0.54 36.18 3.18
2646 2732 5.985175 TGAACAACCCCCTCATATATGAA 57.015 39.130 16.08 1.47 36.18 2.57
2647 2733 5.372363 ACATGAACAACCCCCTCATATATGA 59.628 40.000 14.64 14.64 35.16 2.15
2648 2734 5.634118 ACATGAACAACCCCCTCATATATG 58.366 41.667 6.36 6.36 0.00 1.78
2649 2735 5.930209 ACATGAACAACCCCCTCATATAT 57.070 39.130 0.00 0.00 0.00 0.86
2650 2736 5.908831 ACTACATGAACAACCCCCTCATATA 59.091 40.000 0.00 0.00 0.00 0.86
2651 2737 4.726825 ACTACATGAACAACCCCCTCATAT 59.273 41.667 0.00 0.00 0.00 1.78
2652 2738 4.108570 ACTACATGAACAACCCCCTCATA 58.891 43.478 0.00 0.00 0.00 2.15
2653 2739 2.919602 ACTACATGAACAACCCCCTCAT 59.080 45.455 0.00 0.00 0.00 2.90
2654 2740 2.344592 ACTACATGAACAACCCCCTCA 58.655 47.619 0.00 0.00 0.00 3.86
2655 2741 4.772886 ATACTACATGAACAACCCCCTC 57.227 45.455 0.00 0.00 0.00 4.30
2656 2742 6.847567 TGTATATACTACATGAACAACCCCCT 59.152 38.462 13.89 0.00 0.00 4.79
2657 2743 7.069877 TGTATATACTACATGAACAACCCCC 57.930 40.000 13.89 0.00 0.00 5.40
2717 2803 4.040217 ACATGCCATAGAAGTTGCCAAAAA 59.960 37.500 0.00 0.00 0.00 1.94
2747 2833 4.800471 GCAGAAAACCTAATTAGCACATGC 59.200 41.667 6.99 8.07 42.49 4.06
2754 2840 8.352942 ACAACAGAAAGCAGAAAACCTAATTAG 58.647 33.333 5.43 5.43 0.00 1.73
2761 2847 4.105486 GACACAACAGAAAGCAGAAAACC 58.895 43.478 0.00 0.00 0.00 3.27
2763 2849 5.384063 TTGACACAACAGAAAGCAGAAAA 57.616 34.783 0.00 0.00 0.00 2.29
2769 2855 2.397549 GGCATTGACACAACAGAAAGC 58.602 47.619 0.00 0.00 0.00 3.51
2777 2863 0.396435 AGAGGTCGGCATTGACACAA 59.604 50.000 5.51 0.00 40.72 3.33
2789 2875 1.134965 GTCATGTTCCAGGAGAGGTCG 60.135 57.143 0.00 0.00 0.00 4.79
2791 2877 1.625818 GTGTCATGTTCCAGGAGAGGT 59.374 52.381 0.00 0.00 0.00 3.85
2796 2882 0.764271 TGCAGTGTCATGTTCCAGGA 59.236 50.000 0.00 0.00 0.00 3.86
2804 2890 5.806366 TGATCAGTATTTGCAGTGTCATG 57.194 39.130 0.00 0.00 0.00 3.07
2814 2900 7.260558 ACTGCATTCTCATGATCAGTATTTG 57.739 36.000 0.09 0.00 33.56 2.32
2829 2915 6.313519 TCTTACCCAGATAAACTGCATTCT 57.686 37.500 0.00 0.00 44.52 2.40
2882 2968 7.729881 ACATTTGCCCATAGATATGTGGTAATT 59.270 33.333 2.22 6.09 32.94 1.40
2888 2974 6.487668 TCAGAACATTTGCCCATAGATATGTG 59.512 38.462 0.00 0.00 31.82 3.21
2895 2981 3.635373 AGCATCAGAACATTTGCCCATAG 59.365 43.478 0.00 0.00 35.71 2.23
2905 2995 5.957771 TCTAGGGTTTAGCATCAGAACAT 57.042 39.130 0.00 0.00 0.00 2.71
2919 3009 7.922699 AGAGATTAAAGTGCTATCTAGGGTT 57.077 36.000 0.00 0.00 0.00 4.11
2920 3010 7.787424 AGAAGAGATTAAAGTGCTATCTAGGGT 59.213 37.037 0.00 0.00 0.00 4.34
2921 3011 8.189119 AGAAGAGATTAAAGTGCTATCTAGGG 57.811 38.462 0.00 0.00 0.00 3.53
2925 3019 6.322712 ACCGAGAAGAGATTAAAGTGCTATCT 59.677 38.462 0.00 0.00 0.00 1.98
2940 3034 2.159787 CGCAAATGTTCACCGAGAAGAG 60.160 50.000 0.00 0.00 36.78 2.85
2944 3038 2.333926 CTACGCAAATGTTCACCGAGA 58.666 47.619 0.00 0.00 0.00 4.04
2947 3041 0.179200 GCCTACGCAAATGTTCACCG 60.179 55.000 0.00 0.00 34.03 4.94
3107 3201 5.507985 GGTGAAAGGAAAAACAGGATCAGTG 60.508 44.000 0.00 0.00 0.00 3.66
3241 3336 8.855110 TGTGATGTTGTAAAACATAACTTGGAT 58.145 29.630 22.03 0.00 42.47 3.41
3242 3337 8.226819 TGTGATGTTGTAAAACATAACTTGGA 57.773 30.769 22.03 4.40 42.47 3.53
3313 3408 3.411446 TGTGATTGTTAGCCAACAGAGG 58.589 45.455 0.00 0.00 45.17 3.69
3359 3454 6.090898 CACGAGAAAAACCACTACTATTCCTG 59.909 42.308 0.00 0.00 0.00 3.86
3389 3484 3.371591 TGGTTACACCGCGATATTTTGAC 59.628 43.478 8.23 0.00 42.58 3.18
3431 3526 2.853705 AGGCTACCAGTTTTTACGCAA 58.146 42.857 0.00 0.00 0.00 4.85
3627 3722 5.987347 TCCAGTACAGTAGTTAAACAAGTGC 59.013 40.000 0.00 0.00 0.00 4.40
3639 3734 2.094494 CAGCACCACTCCAGTACAGTAG 60.094 54.545 0.00 0.00 0.00 2.57
3654 3749 1.086634 GCACAGCTACTAGCAGCACC 61.087 60.000 17.25 0.00 45.56 5.01
3657 3752 0.108424 ACAGCACAGCTACTAGCAGC 60.108 55.000 6.87 6.87 45.56 5.25
3660 3755 0.108424 AGCACAGCACAGCTACTAGC 60.108 55.000 0.00 0.00 42.84 3.42
3661 3756 2.266554 GAAGCACAGCACAGCTACTAG 58.733 52.381 0.00 0.00 40.90 2.57
3722 3820 1.806542 TGAAATTTCGTGAGCTGGAGC 59.193 47.619 13.34 0.00 42.49 4.70
3723 3821 3.070018 AGTGAAATTTCGTGAGCTGGAG 58.930 45.455 13.34 0.00 0.00 3.86
3724 3822 3.126001 AGTGAAATTTCGTGAGCTGGA 57.874 42.857 13.34 0.00 0.00 3.86
3725 3823 5.352569 AGAATAGTGAAATTTCGTGAGCTGG 59.647 40.000 13.34 0.00 0.00 4.85
3739 3837 3.011818 TGCGTCCTACGAGAATAGTGAA 58.988 45.455 3.22 0.00 46.05 3.18
3743 3841 2.386249 GCTTGCGTCCTACGAGAATAG 58.614 52.381 3.22 0.00 46.05 1.73
3746 3844 1.154093 CGCTTGCGTCCTACGAGAA 60.154 57.895 6.86 0.00 46.05 2.87
3770 3868 5.713281 CGCCATTTGAACGCATAAAAATAC 58.287 37.500 0.00 0.00 0.00 1.89
3796 3894 8.840321 GGTGTACGTACTCCACTATCTTAATTA 58.160 37.037 31.90 4.45 39.13 1.40
3797 3895 7.340232 TGGTGTACGTACTCCACTATCTTAATT 59.660 37.037 34.39 0.00 42.85 1.40
3798 3896 6.830324 TGGTGTACGTACTCCACTATCTTAAT 59.170 38.462 34.39 0.00 42.85 1.40
3900 3998 3.057734 CGCTAGGGATATTCAAACCGAC 58.942 50.000 0.00 0.00 0.00 4.79
3901 3999 2.547218 GCGCTAGGGATATTCAAACCGA 60.547 50.000 11.61 0.00 0.00 4.69
4036 4134 1.069513 CGTGTCTACCCAACTGACCAA 59.930 52.381 0.00 0.00 0.00 3.67
4056 4154 2.474712 GTTAGCTCACCAACGCGC 59.525 61.111 5.73 0.00 0.00 6.86
4073 4171 3.357079 GCGCATGATTAGGGCCGG 61.357 66.667 0.30 0.00 38.82 6.13
4074 4172 3.716006 CGCGCATGATTAGGGCCG 61.716 66.667 8.75 0.00 41.34 6.13
4075 4173 2.591715 ACGCGCATGATTAGGGCC 60.592 61.111 5.73 0.00 41.34 5.80
4076 4174 2.633657 CACGCGCATGATTAGGGC 59.366 61.111 5.73 0.00 41.02 5.19
4157 4255 2.280524 TTGGTGACGGCGTTGAGG 60.281 61.111 16.19 0.00 0.00 3.86
4340 4438 4.404098 CAGCCGTGGTGGTACCCC 62.404 72.222 10.07 10.88 37.50 4.95
4565 4663 1.069378 CGTAAACTGCGGTCCTCGAC 61.069 60.000 0.00 0.00 42.43 4.20
4793 4891 4.681978 ACCTTGGCGACGCTCACC 62.682 66.667 20.77 3.07 0.00 4.02
4832 4930 1.448540 ATTGAACGGCGAGCTCCAG 60.449 57.895 16.62 4.52 0.00 3.86
4878 4976 4.069304 TGTGGCAGTTGATTAGTAACACC 58.931 43.478 0.00 0.00 0.00 4.16
4900 4998 3.242059 GCACAACGTACGTTACAACAAGT 60.242 43.478 31.29 20.31 36.46 3.16
4920 5018 0.249531 TTTCCAGTTACTCGTGCGCA 60.250 50.000 5.66 5.66 0.00 6.09
5022 5120 2.025226 AGTCCTCCTACTTCACCGATCA 60.025 50.000 0.00 0.00 0.00 2.92
5063 5161 1.170442 AATCCCCAAAACTAACGGCG 58.830 50.000 4.80 4.80 0.00 6.46
5153 5251 2.981898 TGTGCTCAATCTGATGACCAG 58.018 47.619 0.00 0.00 44.27 4.00
5154 5252 3.275999 CATGTGCTCAATCTGATGACCA 58.724 45.455 0.00 0.00 0.00 4.02
5155 5253 3.276857 ACATGTGCTCAATCTGATGACC 58.723 45.455 0.00 0.00 0.00 4.02
5159 5257 7.452813 TCCTATACTACATGTGCTCAATCTGAT 59.547 37.037 9.11 0.00 0.00 2.90
5164 5262 6.985653 ACTCCTATACTACATGTGCTCAAT 57.014 37.500 9.11 0.00 0.00 2.57
5191 5289 5.528690 ACTGCACGAGACGGTTTACTATATA 59.471 40.000 0.00 0.00 0.00 0.86
5201 5299 3.285215 ACGACTGCACGAGACGGT 61.285 61.111 3.48 0.00 43.13 4.83
5237 5345 0.739462 CACTGCTCGATTTGGCCGTA 60.739 55.000 0.00 0.00 0.00 4.02
5248 5356 0.947660 TCTTTCAGCTGCACTGCTCG 60.948 55.000 9.47 2.45 46.76 5.03
5259 5367 8.302965 AGTTCAATGCTTTTTAATCTTTCAGC 57.697 30.769 0.00 0.00 0.00 4.26
5283 5391 3.299340 ACGTACTTGTCCTGTGCTTAG 57.701 47.619 0.00 0.00 0.00 2.18
5286 5394 2.029290 CCTTACGTACTTGTCCTGTGCT 60.029 50.000 0.00 0.00 0.00 4.40
5287 5395 2.288640 ACCTTACGTACTTGTCCTGTGC 60.289 50.000 0.00 0.00 0.00 4.57
5288 5396 3.243636 ACACCTTACGTACTTGTCCTGTG 60.244 47.826 0.00 0.00 0.00 3.66
5289 5397 2.961062 ACACCTTACGTACTTGTCCTGT 59.039 45.455 0.00 0.00 0.00 4.00
5290 5398 3.655276 ACACCTTACGTACTTGTCCTG 57.345 47.619 0.00 0.00 0.00 3.86
5291 5399 4.401925 AGTACACCTTACGTACTTGTCCT 58.598 43.478 0.00 0.00 45.67 3.85
5292 5400 4.773323 AGTACACCTTACGTACTTGTCC 57.227 45.455 0.00 0.00 45.67 4.02
5293 5401 6.402658 GGAGTAGTACACCTTACGTACTTGTC 60.403 46.154 9.33 5.95 45.67 3.18
5294 5402 5.412904 GGAGTAGTACACCTTACGTACTTGT 59.587 44.000 9.33 1.37 45.67 3.16
5295 5403 5.446473 CGGAGTAGTACACCTTACGTACTTG 60.446 48.000 13.96 0.00 45.67 3.16
5296 5404 4.631813 CGGAGTAGTACACCTTACGTACTT 59.368 45.833 13.96 0.00 45.67 2.24
5298 5406 3.242446 GCGGAGTAGTACACCTTACGTAC 60.242 52.174 13.96 0.00 39.64 3.67
5299 5407 2.936498 GCGGAGTAGTACACCTTACGTA 59.064 50.000 13.96 0.00 0.00 3.57
5300 5408 1.740025 GCGGAGTAGTACACCTTACGT 59.260 52.381 13.96 0.00 0.00 3.57
5301 5409 2.012673 AGCGGAGTAGTACACCTTACG 58.987 52.381 13.96 1.78 0.00 3.18
5302 5410 2.031437 CGAGCGGAGTAGTACACCTTAC 59.969 54.545 13.96 4.65 0.00 2.34
5303 5411 2.093500 TCGAGCGGAGTAGTACACCTTA 60.093 50.000 13.96 0.00 0.00 2.69
5304 5412 1.093159 CGAGCGGAGTAGTACACCTT 58.907 55.000 13.96 3.32 0.00 3.50
5305 5413 0.251354 TCGAGCGGAGTAGTACACCT 59.749 55.000 13.96 0.00 0.00 4.00
5306 5414 1.263752 GATCGAGCGGAGTAGTACACC 59.736 57.143 6.69 6.69 0.00 4.16
5307 5415 1.070710 CGATCGAGCGGAGTAGTACAC 60.071 57.143 16.65 0.00 0.00 2.90
5308 5416 1.202452 TCGATCGAGCGGAGTAGTACA 60.202 52.381 24.18 0.00 0.00 2.90
5309 5417 1.192090 GTCGATCGAGCGGAGTAGTAC 59.808 57.143 24.18 8.19 0.00 2.73
5310 5418 1.068281 AGTCGATCGAGCGGAGTAGTA 59.932 52.381 24.18 0.00 0.00 1.82
5341 5449 3.896133 CCGCATGCATGTGCCTCC 61.896 66.667 30.54 11.61 42.06 4.30
5366 5474 9.909644 AATGTGGTACTATCGTGTAATTATCTC 57.090 33.333 0.00 0.00 0.00 2.75
5446 5554 2.535588 CGGTTAGACCCAAACGTGG 58.464 57.895 0.00 0.00 45.53 4.94
5459 5567 1.803334 AGCTCGATTTGCAACGGTTA 58.197 45.000 0.00 0.00 0.00 2.85
5503 5611 4.329545 GGGCGGTCAGTTCCAGCA 62.330 66.667 0.00 0.00 0.00 4.41
5768 5876 3.458163 GCCCGTCCGTGGATGAGA 61.458 66.667 9.72 0.00 33.22 3.27
5832 5940 5.574970 ACCAAATCAAAAAGCCCCAAATA 57.425 34.783 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.