Multiple sequence alignment - TraesCS2D01G355300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G355300 chr2D 100.000 7707 0 0 1 7707 457643412 457651118 0.000000e+00 14233.0
1 TraesCS2D01G355300 chr2D 96.970 99 3 0 1499 1597 457644866 457644964 4.780000e-37 167.0
2 TraesCS2D01G355300 chr2D 96.970 99 3 0 1455 1553 457644910 457645008 4.780000e-37 167.0
3 TraesCS2D01G355300 chr2D 100.000 70 0 0 5877 5946 457649220 457649289 6.280000e-26 130.0
4 TraesCS2D01G355300 chr2D 100.000 70 0 0 5809 5878 457649288 457649357 6.280000e-26 130.0
5 TraesCS2D01G355300 chr2B 95.655 4373 123 22 1543 5878 538946026 538950368 0.000000e+00 6961.0
6 TraesCS2D01G355300 chr2B 92.922 1865 78 23 5877 7707 538950299 538952143 0.000000e+00 2663.0
7 TraesCS2D01G355300 chr2B 93.544 666 35 7 844 1506 538945417 538946077 0.000000e+00 985.0
8 TraesCS2D01G355300 chr2B 92.138 407 17 10 199 596 538944802 538945202 1.880000e-155 560.0
9 TraesCS2D01G355300 chr2B 98.148 54 1 0 1499 1552 538946026 538946079 2.290000e-15 95.3
10 TraesCS2D01G355300 chr2A 94.589 2772 89 23 3142 5878 601329404 601332149 0.000000e+00 4231.0
11 TraesCS2D01G355300 chr2A 95.103 1654 70 7 1499 3150 601326437 601328081 0.000000e+00 2595.0
12 TraesCS2D01G355300 chr2A 93.531 912 48 9 6192 7100 601333349 601334252 0.000000e+00 1347.0
13 TraesCS2D01G355300 chr2A 94.869 799 36 4 758 1553 601325739 601326535 0.000000e+00 1243.0
14 TraesCS2D01G355300 chr2A 90.617 405 26 7 199 596 601325341 601325740 1.900000e-145 527.0
15 TraesCS2D01G355300 chr2A 86.577 298 21 11 7083 7363 601334268 601334563 2.090000e-80 311.0
16 TraesCS2D01G355300 chr2A 91.304 92 7 1 7617 7707 601334931 601335022 2.920000e-24 124.0
17 TraesCS2D01G355300 chr2A 84.211 95 9 3 6108 6202 601333078 601333166 3.830000e-13 87.9
18 TraesCS2D01G355300 chr5B 94.203 207 10 2 575 780 657711261 657711466 1.610000e-81 315.0
19 TraesCS2D01G355300 chr5B 96.045 177 7 0 595 771 591647023 591646847 9.790000e-74 289.0
20 TraesCS2D01G355300 chr5B 87.879 198 17 7 5 198 35049159 35048965 7.780000e-55 226.0
21 TraesCS2D01G355300 chr3A 92.166 217 16 1 569 784 70479236 70479020 9.720000e-79 305.0
22 TraesCS2D01G355300 chr3A 87.129 202 21 5 1 198 207791914 207791714 2.800000e-54 224.0
23 TraesCS2D01G355300 chr3B 97.661 171 4 0 593 763 120616911 120617081 2.100000e-75 294.0
24 TraesCS2D01G355300 chr3B 93.878 196 7 5 592 787 571752522 571752712 2.720000e-74 291.0
25 TraesCS2D01G355300 chr3B 92.857 196 10 4 568 761 746353400 746353593 1.640000e-71 281.0
26 TraesCS2D01G355300 chr3B 94.595 37 1 1 7473 7508 139417761 139417725 1.000000e-03 56.5
27 TraesCS2D01G355300 chr6D 97.110 173 5 0 588 760 392896968 392897140 7.560000e-75 292.0
28 TraesCS2D01G355300 chr6D 87.864 206 13 9 1 200 445030795 445030596 1.670000e-56 231.0
29 TraesCS2D01G355300 chr5D 95.161 186 6 3 592 775 61715385 61715201 2.720000e-74 291.0
30 TraesCS2D01G355300 chr5D 88.614 202 19 4 1 199 398118985 398119185 7.730000e-60 243.0
31 TraesCS2D01G355300 chr5A 92.670 191 14 0 581 771 110665236 110665426 7.620000e-70 276.0
32 TraesCS2D01G355300 chr5A 86.875 160 20 1 7350 7508 451733167 451733008 2.210000e-40 178.0
33 TraesCS2D01G355300 chr5A 81.905 105 18 1 7350 7453 662726661 662726557 3.830000e-13 87.9
34 TraesCS2D01G355300 chr7D 91.457 199 15 2 1 198 234131425 234131228 9.850000e-69 272.0
35 TraesCS2D01G355300 chr3D 91.089 202 14 4 1 199 502132775 502132975 3.540000e-68 270.0
36 TraesCS2D01G355300 chr3D 89.163 203 15 6 1 198 161207783 161207983 5.970000e-61 246.0
37 TraesCS2D01G355300 chr3D 87.500 200 21 3 1 199 458309882 458310078 2.160000e-55 228.0
38 TraesCS2D01G355300 chr4D 91.000 200 15 3 5 202 378497050 378496852 4.590000e-67 267.0
39 TraesCS2D01G355300 chr6A 81.022 137 23 2 7352 7485 453569998 453569862 1.060000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G355300 chr2D 457643412 457651118 7706 False 14233.000000 14233 100.000000 1 7707 1 chr2D.!!$F1 7706
1 TraesCS2D01G355300 chr2B 538944802 538950368 5566 False 2835.333333 6961 93.779000 199 5878 3 chr2B.!!$F3 5679
2 TraesCS2D01G355300 chr2B 538950299 538952143 1844 False 2663.000000 2663 92.922000 5877 7707 1 chr2B.!!$F2 1830
3 TraesCS2D01G355300 chr2A 601325341 601335022 9681 False 1308.237500 4231 91.350125 199 7707 8 chr2A.!!$F1 7508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.521291 CGGACCGCACACATCAAATT 59.479 50.000 0.00 0.00 0.00 1.82 F
1119 1285 0.683412 CCCGCCCTACCAGTATTACC 59.317 60.000 0.00 0.00 0.00 2.85 F
1753 1921 1.005097 TCAGCAATTGACATGCCCTCT 59.995 47.619 10.34 0.00 44.91 3.69 F
2316 2507 1.369091 GGTAAGCTGTGACCATGCCG 61.369 60.000 7.64 0.00 35.65 5.69 F
2414 2605 3.433615 GTGAAGATTTCGTGCTAGCAAGT 59.566 43.478 26.48 10.84 0.00 3.16 F
3453 4975 3.471680 AGCTGTGTCTTCTTTGGACTTC 58.528 45.455 0.00 0.00 35.04 3.01 F
4583 6130 3.933861 AACTTCAGGTTCCTCTTGTGT 57.066 42.857 0.00 0.00 31.69 3.72 F
6104 7666 2.358322 ACCTTTGGTTTGTCGGATGT 57.642 45.000 0.00 0.00 27.29 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 2058 0.035317 ACATTCGACCAGAAGCTGCA 59.965 50.000 1.02 0.0 42.92 4.41 R
2456 2647 0.104855 CTGCCGCTAGAGCATGGTTA 59.895 55.000 8.18 0.0 40.04 2.85 R
2924 3115 1.590932 ATGAACTCATCATCCGCTGC 58.409 50.000 0.00 0.0 45.91 5.25 R
3802 5348 1.236616 TTGTCAGAATGGTGGCAGCG 61.237 55.000 12.58 0.0 32.51 5.18 R
4321 5867 1.625616 ACAGACTACGCGCACATAAC 58.374 50.000 5.73 0.0 0.00 1.89 R
4889 6436 1.876156 CACAGTCCAAGTCTTTCAGGC 59.124 52.381 0.00 0.0 0.00 4.85 R
6222 8745 0.975040 GGTATGCCAAATGGTGCCCA 60.975 55.000 0.71 0.0 37.57 5.36 R
7136 9714 0.105964 AAGGAAAAAGGTTTGGCCGC 59.894 50.000 0.00 0.0 43.70 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.812147 TGTCTACTGTTCATGTACTGTTTTAG 57.188 34.615 17.65 10.86 33.15 1.85
26 27 7.384115 TGTCTACTGTTCATGTACTGTTTTAGC 59.616 37.037 17.65 8.36 33.15 3.09
27 28 5.941948 ACTGTTCATGTACTGTTTTAGCC 57.058 39.130 8.82 0.00 0.00 3.93
28 29 4.760204 ACTGTTCATGTACTGTTTTAGCCC 59.240 41.667 8.82 0.00 0.00 5.19
29 30 3.749088 TGTTCATGTACTGTTTTAGCCCG 59.251 43.478 4.01 0.00 0.00 6.13
30 31 3.965379 TCATGTACTGTTTTAGCCCGA 57.035 42.857 0.00 0.00 0.00 5.14
31 32 4.481368 TCATGTACTGTTTTAGCCCGAT 57.519 40.909 0.00 0.00 0.00 4.18
32 33 4.839121 TCATGTACTGTTTTAGCCCGATT 58.161 39.130 0.00 0.00 0.00 3.34
33 34 5.250200 TCATGTACTGTTTTAGCCCGATTT 58.750 37.500 0.00 0.00 0.00 2.17
34 35 5.123186 TCATGTACTGTTTTAGCCCGATTTG 59.877 40.000 0.00 0.00 0.00 2.32
35 36 4.391155 TGTACTGTTTTAGCCCGATTTGT 58.609 39.130 0.00 0.00 0.00 2.83
36 37 4.453136 TGTACTGTTTTAGCCCGATTTGTC 59.547 41.667 0.00 0.00 0.00 3.18
37 38 3.751518 ACTGTTTTAGCCCGATTTGTCT 58.248 40.909 0.00 0.00 0.00 3.41
38 39 4.142038 ACTGTTTTAGCCCGATTTGTCTT 58.858 39.130 0.00 0.00 0.00 3.01
39 40 4.583073 ACTGTTTTAGCCCGATTTGTCTTT 59.417 37.500 0.00 0.00 0.00 2.52
40 41 5.068591 ACTGTTTTAGCCCGATTTGTCTTTT 59.931 36.000 0.00 0.00 0.00 2.27
41 42 5.908341 TGTTTTAGCCCGATTTGTCTTTTT 58.092 33.333 0.00 0.00 0.00 1.94
64 65 3.665544 GAGAGCTGCTCAGATGTCC 57.334 57.895 29.49 2.47 43.38 4.02
65 66 0.822811 GAGAGCTGCTCAGATGTCCA 59.177 55.000 29.49 0.00 43.38 4.02
66 67 1.206610 GAGAGCTGCTCAGATGTCCAA 59.793 52.381 29.49 0.00 43.38 3.53
67 68 1.627329 AGAGCTGCTCAGATGTCCAAA 59.373 47.619 29.49 0.00 32.06 3.28
68 69 2.239150 AGAGCTGCTCAGATGTCCAAAT 59.761 45.455 29.49 3.19 32.06 2.32
69 70 2.355132 GAGCTGCTCAGATGTCCAAATG 59.645 50.000 24.02 0.00 0.00 2.32
70 71 2.026542 AGCTGCTCAGATGTCCAAATGA 60.027 45.455 0.00 0.00 0.00 2.57
71 72 2.097142 GCTGCTCAGATGTCCAAATGAC 59.903 50.000 0.29 0.00 44.72 3.06
72 73 3.607741 CTGCTCAGATGTCCAAATGACT 58.392 45.455 0.00 0.00 44.75 3.41
73 74 4.008330 CTGCTCAGATGTCCAAATGACTT 58.992 43.478 0.00 0.00 44.75 3.01
74 75 3.754850 TGCTCAGATGTCCAAATGACTTG 59.245 43.478 0.00 0.00 44.75 3.16
75 76 4.005650 GCTCAGATGTCCAAATGACTTGA 58.994 43.478 0.00 0.00 44.75 3.02
76 77 4.456911 GCTCAGATGTCCAAATGACTTGAA 59.543 41.667 0.00 0.00 44.75 2.69
77 78 5.048504 GCTCAGATGTCCAAATGACTTGAAA 60.049 40.000 0.00 0.00 44.75 2.69
78 79 6.349944 GCTCAGATGTCCAAATGACTTGAAAT 60.350 38.462 0.00 0.00 44.75 2.17
79 80 7.528996 TCAGATGTCCAAATGACTTGAAATT 57.471 32.000 0.00 0.00 44.75 1.82
80 81 7.954835 TCAGATGTCCAAATGACTTGAAATTT 58.045 30.769 0.00 0.00 44.75 1.82
81 82 7.868922 TCAGATGTCCAAATGACTTGAAATTTG 59.131 33.333 0.00 0.00 44.75 2.32
82 83 7.868922 CAGATGTCCAAATGACTTGAAATTTGA 59.131 33.333 9.16 0.00 43.41 2.69
83 84 8.423349 AGATGTCCAAATGACTTGAAATTTGAA 58.577 29.630 9.16 0.00 43.41 2.69
84 85 8.597662 ATGTCCAAATGACTTGAAATTTGAAG 57.402 30.769 14.85 14.85 43.41 3.02
85 86 6.479660 TGTCCAAATGACTTGAAATTTGAAGC 59.520 34.615 16.14 10.14 43.41 3.86
86 87 5.691305 TCCAAATGACTTGAAATTTGAAGCG 59.309 36.000 16.14 0.00 43.41 4.68
87 88 5.107375 CCAAATGACTTGAAATTTGAAGCGG 60.107 40.000 16.14 5.14 43.41 5.52
88 89 5.452078 AATGACTTGAAATTTGAAGCGGA 57.548 34.783 16.14 2.34 0.00 5.54
89 90 4.223320 TGACTTGAAATTTGAAGCGGAC 57.777 40.909 16.14 7.23 0.00 4.79
90 91 3.004315 TGACTTGAAATTTGAAGCGGACC 59.996 43.478 16.14 3.26 0.00 4.46
91 92 2.031157 ACTTGAAATTTGAAGCGGACCG 60.031 45.455 16.14 10.29 0.00 4.79
102 103 3.649096 CGGACCGCACACATCAAA 58.351 55.556 0.00 0.00 0.00 2.69
103 104 2.170738 CGGACCGCACACATCAAAT 58.829 52.632 0.00 0.00 0.00 2.32
104 105 0.521291 CGGACCGCACACATCAAATT 59.479 50.000 0.00 0.00 0.00 1.82
105 106 1.728825 CGGACCGCACACATCAAATTG 60.729 52.381 0.00 0.00 0.00 2.32
106 107 1.269448 GGACCGCACACATCAAATTGT 59.731 47.619 0.00 0.00 0.00 2.71
107 108 2.584791 GACCGCACACATCAAATTGTC 58.415 47.619 0.00 0.00 0.00 3.18
108 109 2.226437 GACCGCACACATCAAATTGTCT 59.774 45.455 0.00 0.00 0.00 3.41
109 110 3.407698 ACCGCACACATCAAATTGTCTA 58.592 40.909 0.00 0.00 0.00 2.59
110 111 3.188460 ACCGCACACATCAAATTGTCTAC 59.812 43.478 0.00 0.00 0.00 2.59
111 112 3.426159 CCGCACACATCAAATTGTCTACC 60.426 47.826 0.00 0.00 0.00 3.18
112 113 3.724716 CGCACACATCAAATTGTCTACCG 60.725 47.826 0.00 0.00 0.00 4.02
113 114 3.747193 CACACATCAAATTGTCTACCGC 58.253 45.455 0.00 0.00 0.00 5.68
114 115 3.188254 CACACATCAAATTGTCTACCGCA 59.812 43.478 0.00 0.00 0.00 5.69
115 116 3.188460 ACACATCAAATTGTCTACCGCAC 59.812 43.478 0.00 0.00 0.00 5.34
116 117 3.188254 CACATCAAATTGTCTACCGCACA 59.812 43.478 0.00 0.00 0.00 4.57
117 118 4.009675 ACATCAAATTGTCTACCGCACAT 58.990 39.130 0.00 0.00 0.00 3.21
118 119 4.458989 ACATCAAATTGTCTACCGCACATT 59.541 37.500 0.00 0.00 0.00 2.71
119 120 5.048083 ACATCAAATTGTCTACCGCACATTT 60.048 36.000 0.00 0.00 0.00 2.32
120 121 5.446143 TCAAATTGTCTACCGCACATTTT 57.554 34.783 0.00 0.00 30.90 1.82
121 122 5.837437 TCAAATTGTCTACCGCACATTTTT 58.163 33.333 0.00 0.00 29.20 1.94
165 166 9.945904 TTTTTACAAATTGTTTTCTAACCAGGT 57.054 25.926 3.17 0.00 33.15 4.00
166 167 8.934507 TTTACAAATTGTTTTCTAACCAGGTG 57.065 30.769 3.17 0.00 33.15 4.00
167 168 5.356426 ACAAATTGTTTTCTAACCAGGTGC 58.644 37.500 0.00 0.00 33.15 5.01
168 169 5.105146 ACAAATTGTTTTCTAACCAGGTGCA 60.105 36.000 0.00 0.00 33.15 4.57
169 170 4.853924 ATTGTTTTCTAACCAGGTGCAG 57.146 40.909 0.00 0.00 33.15 4.41
170 171 3.569194 TGTTTTCTAACCAGGTGCAGA 57.431 42.857 0.00 0.00 33.15 4.26
171 172 4.098914 TGTTTTCTAACCAGGTGCAGAT 57.901 40.909 0.00 0.00 33.15 2.90
172 173 3.820467 TGTTTTCTAACCAGGTGCAGATG 59.180 43.478 0.00 0.00 33.15 2.90
173 174 4.072131 GTTTTCTAACCAGGTGCAGATGA 58.928 43.478 0.00 0.00 0.00 2.92
174 175 3.616956 TTCTAACCAGGTGCAGATGAG 57.383 47.619 0.00 0.00 0.00 2.90
175 176 1.208052 TCTAACCAGGTGCAGATGAGC 59.792 52.381 0.00 0.00 0.00 4.26
176 177 1.209019 CTAACCAGGTGCAGATGAGCT 59.791 52.381 0.00 0.00 34.99 4.09
178 179 4.220413 CAGGTGCAGATGAGCTGG 57.780 61.111 0.00 0.00 45.03 4.85
179 180 1.451567 CAGGTGCAGATGAGCTGGG 60.452 63.158 0.00 0.00 45.03 4.45
180 181 2.827642 GGTGCAGATGAGCTGGGC 60.828 66.667 0.00 0.00 45.03 5.36
181 182 2.045634 GTGCAGATGAGCTGGGCA 60.046 61.111 0.00 0.00 45.03 5.36
182 183 2.045634 TGCAGATGAGCTGGGCAC 60.046 61.111 0.00 0.00 45.03 5.01
195 196 3.122971 GGCACCGAAACGCCCTAC 61.123 66.667 0.00 0.00 42.82 3.18
196 197 2.047560 GCACCGAAACGCCCTACT 60.048 61.111 0.00 0.00 0.00 2.57
197 198 2.098831 GCACCGAAACGCCCTACTC 61.099 63.158 0.00 0.00 0.00 2.59
198 199 1.590147 CACCGAAACGCCCTACTCT 59.410 57.895 0.00 0.00 0.00 3.24
199 200 0.813184 CACCGAAACGCCCTACTCTA 59.187 55.000 0.00 0.00 0.00 2.43
200 201 1.407979 CACCGAAACGCCCTACTCTAT 59.592 52.381 0.00 0.00 0.00 1.98
201 202 2.105766 ACCGAAACGCCCTACTCTATT 58.894 47.619 0.00 0.00 0.00 1.73
202 203 2.159142 ACCGAAACGCCCTACTCTATTG 60.159 50.000 0.00 0.00 0.00 1.90
203 204 1.859080 CGAAACGCCCTACTCTATTGC 59.141 52.381 0.00 0.00 0.00 3.56
204 205 2.737359 CGAAACGCCCTACTCTATTGCA 60.737 50.000 0.00 0.00 0.00 4.08
205 206 2.604046 AACGCCCTACTCTATTGCAG 57.396 50.000 0.00 0.00 0.00 4.41
465 473 6.290605 AGCATCCATATTTTGGGTATTTTGC 58.709 36.000 0.00 0.00 46.45 3.68
489 497 7.815068 TGCAGTATTAAAAAGAGAGACAGAGAC 59.185 37.037 0.00 0.00 0.00 3.36
540 551 5.142061 TGTAACAAACGCTCTCTCCAATA 57.858 39.130 0.00 0.00 0.00 1.90
586 597 9.901172 CTATTTTTGTAAATAGTACCCCTCTGT 57.099 33.333 8.71 0.00 44.16 3.41
590 601 9.506018 TTTTGTAAATAGTACCCCTCTGTAAAC 57.494 33.333 0.00 0.00 0.00 2.01
591 602 8.439964 TTGTAAATAGTACCCCTCTGTAAACT 57.560 34.615 0.00 0.00 0.00 2.66
592 603 9.545928 TTGTAAATAGTACCCCTCTGTAAACTA 57.454 33.333 0.00 0.00 0.00 2.24
597 608 9.948747 AATAGTACCCCTCTGTAAACTAATACT 57.051 33.333 0.00 0.00 0.00 2.12
598 609 7.894753 AGTACCCCTCTGTAAACTAATACTC 57.105 40.000 0.00 0.00 0.00 2.59
599 610 6.838090 AGTACCCCTCTGTAAACTAATACTCC 59.162 42.308 0.00 0.00 0.00 3.85
600 611 4.967442 ACCCCTCTGTAAACTAATACTCCC 59.033 45.833 0.00 0.00 0.00 4.30
601 612 5.217400 CCCCTCTGTAAACTAATACTCCCT 58.783 45.833 0.00 0.00 0.00 4.20
602 613 5.304871 CCCCTCTGTAAACTAATACTCCCTC 59.695 48.000 0.00 0.00 0.00 4.30
603 614 5.304871 CCCTCTGTAAACTAATACTCCCTCC 59.695 48.000 0.00 0.00 0.00 4.30
604 615 6.137559 CCTCTGTAAACTAATACTCCCTCCT 58.862 44.000 0.00 0.00 0.00 3.69
605 616 6.612049 CCTCTGTAAACTAATACTCCCTCCTT 59.388 42.308 0.00 0.00 0.00 3.36
606 617 7.125963 CCTCTGTAAACTAATACTCCCTCCTTT 59.874 40.741 0.00 0.00 0.00 3.11
607 618 8.075761 TCTGTAAACTAATACTCCCTCCTTTC 57.924 38.462 0.00 0.00 0.00 2.62
608 619 7.125356 TCTGTAAACTAATACTCCCTCCTTTCC 59.875 40.741 0.00 0.00 0.00 3.13
609 620 6.964086 TGTAAACTAATACTCCCTCCTTTCCT 59.036 38.462 0.00 0.00 0.00 3.36
610 621 8.124430 TGTAAACTAATACTCCCTCCTTTCCTA 58.876 37.037 0.00 0.00 0.00 2.94
611 622 8.985922 GTAAACTAATACTCCCTCCTTTCCTAA 58.014 37.037 0.00 0.00 0.00 2.69
612 623 8.458951 AAACTAATACTCCCTCCTTTCCTAAA 57.541 34.615 0.00 0.00 0.00 1.85
613 624 8.640033 AACTAATACTCCCTCCTTTCCTAAAT 57.360 34.615 0.00 0.00 0.00 1.40
614 625 9.739737 AACTAATACTCCCTCCTTTCCTAAATA 57.260 33.333 0.00 0.00 0.00 1.40
615 626 9.915564 ACTAATACTCCCTCCTTTCCTAAATAT 57.084 33.333 0.00 0.00 0.00 1.28
618 629 9.868160 AATACTCCCTCCTTTCCTAAATATTTG 57.132 33.333 11.05 1.40 0.00 2.32
619 630 7.285340 ACTCCCTCCTTTCCTAAATATTTGT 57.715 36.000 11.05 0.00 0.00 2.83
620 631 7.347252 ACTCCCTCCTTTCCTAAATATTTGTC 58.653 38.462 11.05 0.00 0.00 3.18
621 632 7.184753 ACTCCCTCCTTTCCTAAATATTTGTCT 59.815 37.037 11.05 0.00 0.00 3.41
622 633 7.939781 TCCCTCCTTTCCTAAATATTTGTCTT 58.060 34.615 11.05 0.00 0.00 3.01
623 634 8.398743 TCCCTCCTTTCCTAAATATTTGTCTTT 58.601 33.333 11.05 0.00 0.00 2.52
624 635 8.687242 CCCTCCTTTCCTAAATATTTGTCTTTC 58.313 37.037 11.05 0.00 0.00 2.62
625 636 9.467796 CCTCCTTTCCTAAATATTTGTCTTTCT 57.532 33.333 11.05 0.00 0.00 2.52
638 649 7.750229 ATTTGTCTTTCTAGAGATTGCAACA 57.250 32.000 0.00 0.00 0.00 3.33
639 650 7.566760 TTTGTCTTTCTAGAGATTGCAACAA 57.433 32.000 0.00 0.00 0.00 2.83
640 651 6.791887 TGTCTTTCTAGAGATTGCAACAAG 57.208 37.500 0.00 0.00 0.00 3.16
641 652 6.291377 TGTCTTTCTAGAGATTGCAACAAGT 58.709 36.000 0.00 0.00 0.00 3.16
642 653 6.203530 TGTCTTTCTAGAGATTGCAACAAGTG 59.796 38.462 0.00 0.00 0.00 3.16
643 654 6.425114 GTCTTTCTAGAGATTGCAACAAGTGA 59.575 38.462 0.00 0.00 0.00 3.41
644 655 6.425114 TCTTTCTAGAGATTGCAACAAGTGAC 59.575 38.462 0.00 0.00 0.00 3.67
645 656 5.474578 TCTAGAGATTGCAACAAGTGACT 57.525 39.130 0.00 0.00 0.00 3.41
646 657 6.590234 TCTAGAGATTGCAACAAGTGACTA 57.410 37.500 0.00 0.00 0.00 2.59
647 658 6.390721 TCTAGAGATTGCAACAAGTGACTAC 58.609 40.000 0.00 0.00 0.00 2.73
648 659 4.960938 AGAGATTGCAACAAGTGACTACA 58.039 39.130 0.00 0.00 0.00 2.74
649 660 5.555017 AGAGATTGCAACAAGTGACTACAT 58.445 37.500 0.00 0.00 0.00 2.29
650 661 6.701340 AGAGATTGCAACAAGTGACTACATA 58.299 36.000 0.00 0.00 0.00 2.29
651 662 6.591834 AGAGATTGCAACAAGTGACTACATAC 59.408 38.462 0.00 0.00 0.00 2.39
652 663 6.230472 AGATTGCAACAAGTGACTACATACA 58.770 36.000 0.00 0.00 0.00 2.29
653 664 5.922739 TTGCAACAAGTGACTACATACAG 57.077 39.130 0.00 0.00 0.00 2.74
654 665 5.208463 TGCAACAAGTGACTACATACAGA 57.792 39.130 0.00 0.00 0.00 3.41
655 666 5.230182 TGCAACAAGTGACTACATACAGAG 58.770 41.667 0.00 0.00 0.00 3.35
656 667 4.092091 GCAACAAGTGACTACATACAGAGC 59.908 45.833 0.00 0.00 0.00 4.09
657 668 5.230182 CAACAAGTGACTACATACAGAGCA 58.770 41.667 0.00 0.00 0.00 4.26
658 669 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
659 670 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
660 671 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
661 672 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
662 673 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
663 674 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
664 675 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
665 676 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
666 677 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
667 678 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
668 679 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
669 680 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
670 681 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
671 682 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
672 683 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
673 684 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
674 685 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
675 686 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
708 719 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
710 721 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
711 722 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
712 723 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
713 724 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
714 725 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
715 726 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
716 727 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
717 728 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
718 729 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
719 730 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
720 731 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
721 732 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
722 733 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
723 734 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
724 735 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
725 736 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
726 737 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
727 738 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
728 739 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
729 740 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
730 741 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
731 742 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
735 746 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
736 747 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
754 765 7.611213 AAGACAAATATTTAGGAACGGAGTG 57.389 36.000 0.00 0.00 45.00 3.51
755 766 6.942976 AGACAAATATTTAGGAACGGAGTGA 58.057 36.000 0.00 0.00 45.00 3.41
756 767 7.042335 AGACAAATATTTAGGAACGGAGTGAG 58.958 38.462 0.00 0.00 45.00 3.51
771 782 9.530633 GAACGGAGTGAGTATAAGACATTTTAT 57.469 33.333 0.00 0.00 45.00 1.40
877 1042 5.703130 GCTTCAAGAGTCTCAACCTTATGTT 59.297 40.000 1.94 0.00 37.80 2.71
958 1124 2.630580 ACTCAACTCTTCTCCCACACTC 59.369 50.000 0.00 0.00 0.00 3.51
1083 1249 0.914902 ACCAGGTAAGCCCTTCCTCC 60.915 60.000 0.00 0.00 42.73 4.30
1107 1273 2.680965 CAATACCCAACCCGCCCT 59.319 61.111 0.00 0.00 0.00 5.19
1117 1283 1.764134 CAACCCGCCCTACCAGTATTA 59.236 52.381 0.00 0.00 0.00 0.98
1119 1285 0.683412 CCCGCCCTACCAGTATTACC 59.317 60.000 0.00 0.00 0.00 2.85
1215 1381 2.208132 AGCCTTTCTCTCTCGACTCA 57.792 50.000 0.00 0.00 0.00 3.41
1438 1604 4.941873 AGCTTGGGTTTACTTGTATACTGC 59.058 41.667 4.17 0.00 0.00 4.40
1468 1634 4.524328 ACTGGAGCTAGGGTTTTGATTTTG 59.476 41.667 0.00 0.00 0.00 2.44
1469 1635 4.735369 TGGAGCTAGGGTTTTGATTTTGA 58.265 39.130 0.00 0.00 0.00 2.69
1470 1636 5.144100 TGGAGCTAGGGTTTTGATTTTGAA 58.856 37.500 0.00 0.00 0.00 2.69
1471 1637 5.779771 TGGAGCTAGGGTTTTGATTTTGAAT 59.220 36.000 0.00 0.00 0.00 2.57
1472 1638 6.269769 TGGAGCTAGGGTTTTGATTTTGAATT 59.730 34.615 0.00 0.00 0.00 2.17
1473 1639 7.161404 GGAGCTAGGGTTTTGATTTTGAATTT 58.839 34.615 0.00 0.00 0.00 1.82
1474 1640 7.118245 GGAGCTAGGGTTTTGATTTTGAATTTG 59.882 37.037 0.00 0.00 0.00 2.32
1475 1641 7.734942 AGCTAGGGTTTTGATTTTGAATTTGA 58.265 30.769 0.00 0.00 0.00 2.69
1476 1642 7.874528 AGCTAGGGTTTTGATTTTGAATTTGAG 59.125 33.333 0.00 0.00 0.00 3.02
1477 1643 6.866010 AGGGTTTTGATTTTGAATTTGAGC 57.134 33.333 0.00 0.00 0.00 4.26
1478 1644 6.594744 AGGGTTTTGATTTTGAATTTGAGCT 58.405 32.000 0.00 0.00 0.00 4.09
1479 1645 6.707608 AGGGTTTTGATTTTGAATTTGAGCTC 59.292 34.615 6.82 6.82 0.00 4.09
1480 1646 6.346838 GGGTTTTGATTTTGAATTTGAGCTCG 60.347 38.462 9.64 0.00 0.00 5.03
1481 1647 6.346838 GGTTTTGATTTTGAATTTGAGCTCGG 60.347 38.462 9.64 0.00 0.00 4.63
1482 1648 5.452078 TTGATTTTGAATTTGAGCTCGGT 57.548 34.783 9.64 0.00 0.00 4.69
1483 1649 4.797471 TGATTTTGAATTTGAGCTCGGTG 58.203 39.130 9.64 0.00 0.00 4.94
1484 1650 4.518590 TGATTTTGAATTTGAGCTCGGTGA 59.481 37.500 9.64 0.00 0.00 4.02
1485 1651 5.183713 TGATTTTGAATTTGAGCTCGGTGAT 59.816 36.000 9.64 0.00 0.00 3.06
1486 1652 5.452078 TTTTGAATTTGAGCTCGGTGATT 57.548 34.783 9.64 6.33 0.00 2.57
1487 1653 5.452078 TTTGAATTTGAGCTCGGTGATTT 57.548 34.783 9.64 0.00 0.00 2.17
1488 1654 4.424061 TGAATTTGAGCTCGGTGATTTG 57.576 40.909 9.64 0.00 0.00 2.32
1489 1655 3.191162 TGAATTTGAGCTCGGTGATTTGG 59.809 43.478 9.64 0.00 0.00 3.28
1490 1656 2.270352 TTTGAGCTCGGTGATTTGGT 57.730 45.000 9.64 0.00 0.00 3.67
1491 1657 3.410631 TTTGAGCTCGGTGATTTGGTA 57.589 42.857 9.64 0.00 0.00 3.25
1492 1658 3.410631 TTGAGCTCGGTGATTTGGTAA 57.589 42.857 9.64 0.00 0.00 2.85
1493 1659 3.627395 TGAGCTCGGTGATTTGGTAAT 57.373 42.857 9.64 0.00 0.00 1.89
1494 1660 3.950397 TGAGCTCGGTGATTTGGTAATT 58.050 40.909 9.64 0.00 0.00 1.40
1495 1661 5.092554 TGAGCTCGGTGATTTGGTAATTA 57.907 39.130 9.64 0.00 0.00 1.40
1496 1662 5.116180 TGAGCTCGGTGATTTGGTAATTAG 58.884 41.667 9.64 0.00 0.00 1.73
1497 1663 5.105106 TGAGCTCGGTGATTTGGTAATTAGA 60.105 40.000 9.64 0.00 0.00 2.10
1498 1664 5.741011 AGCTCGGTGATTTGGTAATTAGAA 58.259 37.500 0.00 0.00 0.00 2.10
1499 1665 5.817816 AGCTCGGTGATTTGGTAATTAGAAG 59.182 40.000 0.00 0.00 0.00 2.85
1500 1666 5.007724 GCTCGGTGATTTGGTAATTAGAAGG 59.992 44.000 0.00 0.00 0.00 3.46
1501 1667 5.433526 TCGGTGATTTGGTAATTAGAAGGG 58.566 41.667 0.00 0.00 0.00 3.95
1502 1668 5.045432 TCGGTGATTTGGTAATTAGAAGGGT 60.045 40.000 0.00 0.00 0.00 4.34
1503 1669 5.650703 CGGTGATTTGGTAATTAGAAGGGTT 59.349 40.000 0.00 0.00 0.00 4.11
1504 1670 6.152154 CGGTGATTTGGTAATTAGAAGGGTTT 59.848 38.462 0.00 0.00 0.00 3.27
1505 1671 7.309560 CGGTGATTTGGTAATTAGAAGGGTTTT 60.310 37.037 0.00 0.00 0.00 2.43
1506 1672 9.027202 GGTGATTTGGTAATTAGAAGGGTTTTA 57.973 33.333 0.00 0.00 0.00 1.52
1571 1737 7.703298 TTTGATTTTGAATTTGAGCTCAGTG 57.297 32.000 17.43 0.00 0.00 3.66
1578 1744 4.828939 TGAATTTGAGCTCAGTGATTTGGT 59.171 37.500 17.43 0.00 0.00 3.67
1603 1770 9.406828 GTAATTAGAAGGGTTTTGATGTGTTTC 57.593 33.333 0.00 0.00 0.00 2.78
1663 1830 5.931724 TCTTTGTTGATCGCTGTTTGAGATA 59.068 36.000 0.00 0.00 35.35 1.98
1664 1831 6.426633 TCTTTGTTGATCGCTGTTTGAGATAA 59.573 34.615 0.00 0.00 35.35 1.75
1753 1921 1.005097 TCAGCAATTGACATGCCCTCT 59.995 47.619 10.34 0.00 44.91 3.69
1754 1922 2.239402 TCAGCAATTGACATGCCCTCTA 59.761 45.455 10.34 0.00 44.91 2.43
1777 1945 9.168451 TCTATTTTTCCAGTAATGCAACGATTA 57.832 29.630 0.00 0.00 0.00 1.75
1934 2125 5.403466 GGTTTCAGTTTTGCATTTAGAGCAG 59.597 40.000 0.00 0.00 43.75 4.24
1937 2128 6.187125 TCAGTTTTGCATTTAGAGCAGATC 57.813 37.500 0.00 0.00 43.75 2.75
2035 2226 3.006752 GCTGAATTTCCACACCATTTCCA 59.993 43.478 0.00 0.00 0.00 3.53
2052 2243 3.094484 TCCAAAAATAGCCATCCGGTT 57.906 42.857 0.00 0.00 33.28 4.44
2053 2244 2.757868 TCCAAAAATAGCCATCCGGTTG 59.242 45.455 0.00 2.69 33.28 3.77
2070 2261 2.676342 GGTTGGGCTTAACATCTGTACG 59.324 50.000 7.31 0.00 32.22 3.67
2079 2270 6.183360 GGCTTAACATCTGTACGTTCAGTTAC 60.183 42.308 19.88 0.00 36.85 2.50
2144 2335 7.804129 TGCGTAACAACTTTATTCATTGTAACC 59.196 33.333 0.00 0.00 35.54 2.85
2148 2339 5.475564 ACAACTTTATTCATTGTAACCGCCT 59.524 36.000 0.00 0.00 34.84 5.52
2316 2507 1.369091 GGTAAGCTGTGACCATGCCG 61.369 60.000 7.64 0.00 35.65 5.69
2351 2542 7.890655 AGGATATATTTGGGTTTGGCTAATCTC 59.109 37.037 0.00 0.00 0.00 2.75
2352 2543 7.890655 GGATATATTTGGGTTTGGCTAATCTCT 59.109 37.037 0.00 0.00 0.00 3.10
2414 2605 3.433615 GTGAAGATTTCGTGCTAGCAAGT 59.566 43.478 26.48 10.84 0.00 3.16
2446 2637 4.261614 GGAGTCCAGGTCACATTTCAAAAC 60.262 45.833 3.60 0.00 0.00 2.43
2456 2647 5.641636 GTCACATTTCAAAACTGGTTTGGTT 59.358 36.000 17.41 1.12 45.73 3.67
2521 2712 8.719596 GGTATAGTCCCTATCATGAGAGAGATA 58.280 40.741 18.91 6.27 35.06 1.98
2558 2749 6.228258 TCCATGTGTACAACCTTTCTTCTAC 58.772 40.000 0.00 0.00 0.00 2.59
2679 2870 3.834813 ACATTGTTCTCCACAGAGCTCTA 59.165 43.478 17.75 0.00 40.22 2.43
2839 3030 6.590234 ATGGTTCTTTTGTCAGGTATTTCC 57.410 37.500 0.00 0.00 0.00 3.13
2924 3115 5.330271 CTGTAAGTCCTGTGTTTCTTTCG 57.670 43.478 0.00 0.00 0.00 3.46
3095 3286 4.603094 TTCCCCTTTTCCTCCTAAATCC 57.397 45.455 0.00 0.00 0.00 3.01
3372 4894 4.182693 TGTGATGGTTCGTAACTACCTG 57.817 45.455 0.00 0.00 35.41 4.00
3382 4904 7.037438 GGTTCGTAACTACCTGTATCATTCAA 58.963 38.462 0.00 0.00 0.00 2.69
3453 4975 3.471680 AGCTGTGTCTTCTTTGGACTTC 58.528 45.455 0.00 0.00 35.04 3.01
3459 4981 7.387948 GCTGTGTCTTCTTTGGACTTCTAATAA 59.612 37.037 0.00 0.00 35.04 1.40
3654 5197 8.822805 TCCACTGTTCTCTGTATTTACCTAAAT 58.177 33.333 0.00 0.00 39.14 1.40
3802 5348 7.255277 GGCATCCCTAGTTTTCTCAATAATGTC 60.255 40.741 0.00 0.00 0.00 3.06
4321 5867 4.124238 CCTGGGCTTTATGATTTTGCATG 58.876 43.478 0.00 0.00 0.00 4.06
4434 5980 6.259608 TGTTGCCCAACTTGATTTTAAACATG 59.740 34.615 11.91 0.00 41.67 3.21
4583 6130 3.933861 AACTTCAGGTTCCTCTTGTGT 57.066 42.857 0.00 0.00 31.69 3.72
4676 6223 6.320418 TGATAAGCTAACTCTCCGTCATTGTA 59.680 38.462 0.00 0.00 0.00 2.41
4842 6389 7.375834 TGTATCCGTTGACTATCATATTCACC 58.624 38.462 0.00 0.00 0.00 4.02
5231 6780 9.706691 AACAAGTATGACATAACCTTATATCCG 57.293 33.333 0.00 0.00 0.00 4.18
5239 6788 9.537192 TGACATAACCTTATATCCGTTAAGTTG 57.463 33.333 0.00 0.00 27.51 3.16
5274 6823 6.412460 TGTTTTTGTTTACGTACTCACATCG 58.588 36.000 0.00 0.00 0.00 3.84
5348 6897 4.340097 ACACCAATTCTACGGTCATCGATA 59.660 41.667 0.00 0.00 42.43 2.92
5551 7100 3.797039 CAAGGAGCATCGATGAGGTTTA 58.203 45.455 29.20 0.00 34.37 2.01
5806 7368 9.211485 CCATTTTCTTCATTTTAAACTGCTGAT 57.789 29.630 0.00 0.00 0.00 2.90
5833 7395 9.793252 GAACTATGTGCTTAATTCAATGAACAT 57.207 29.630 0.00 0.00 0.00 2.71
5840 7402 7.277098 GTGCTTAATTCAATGAACATGCTTGAT 59.723 33.333 6.60 0.00 0.00 2.57
5908 7470 7.277098 GTGCTTAATTCAATGAACATGCTTGAT 59.723 33.333 6.60 0.00 0.00 2.57
5985 7547 5.047306 TGTCTCCTAACTTGAATGTCGTGAT 60.047 40.000 0.00 0.00 0.00 3.06
5991 7553 8.038351 TCCTAACTTGAATGTCGTGATTTATCA 58.962 33.333 0.00 0.00 0.00 2.15
6104 7666 2.358322 ACCTTTGGTTTGTCGGATGT 57.642 45.000 0.00 0.00 27.29 3.06
6222 8745 6.053005 TGGTCTCGAAACAATACTTTGAAGT 58.947 36.000 1.60 1.60 42.91 3.01
6353 8876 2.763039 TCCATCCAGCTCTTGATACCA 58.237 47.619 0.00 0.00 0.00 3.25
6372 8895 2.360949 ATCCATCGAGGTCGCTGCTG 62.361 60.000 0.00 0.00 39.60 4.41
6536 9060 9.403583 TCAATTTTACAAAGTCTTGTTCCTACT 57.596 29.630 0.00 0.00 43.45 2.57
6563 9087 4.385825 TCAGGTTTGTAACACACCATCTC 58.614 43.478 5.12 0.00 36.73 2.75
6568 9092 1.067142 TGTAACACACCATCTCGCCTC 60.067 52.381 0.00 0.00 0.00 4.70
6685 9209 0.742281 ATCTCGCGCAGTGCATTCTT 60.742 50.000 16.83 0.00 46.97 2.52
6720 9244 0.676151 CAGTGAGCTTCTTCAGGGGC 60.676 60.000 0.00 0.00 0.00 5.80
6731 9255 0.322456 TTCAGGGGCTTCCATGTTCG 60.322 55.000 0.00 0.00 42.50 3.95
6892 9416 3.883489 CGAGGTGGATGTAGTCATGTAGA 59.117 47.826 0.00 0.00 34.06 2.59
6893 9417 4.520874 CGAGGTGGATGTAGTCATGTAGAT 59.479 45.833 0.00 0.00 34.06 1.98
6895 9419 4.590647 AGGTGGATGTAGTCATGTAGATGG 59.409 45.833 0.00 0.00 34.06 3.51
6897 9421 5.163301 GGTGGATGTAGTCATGTAGATGGTT 60.163 44.000 0.00 0.00 34.06 3.67
6898 9422 5.755375 GTGGATGTAGTCATGTAGATGGTTG 59.245 44.000 0.00 0.00 34.06 3.77
6899 9423 5.163311 TGGATGTAGTCATGTAGATGGTTGG 60.163 44.000 0.00 0.00 34.06 3.77
6952 9480 7.910162 GCTGGTGTAACTGTTTGATTATACATG 59.090 37.037 0.00 0.00 36.74 3.21
6997 9533 0.945813 GATTCAGCATGCTCAGGCTC 59.054 55.000 19.68 6.87 46.42 4.70
6998 9534 0.547075 ATTCAGCATGCTCAGGCTCT 59.453 50.000 19.68 0.00 46.42 4.09
6999 9535 0.392595 TTCAGCATGCTCAGGCTCTG 60.393 55.000 19.68 4.96 46.42 3.35
7126 9704 1.039068 TCCGTGGTTTGTTCCGTCTA 58.961 50.000 0.00 0.00 0.00 2.59
7127 9705 1.619827 TCCGTGGTTTGTTCCGTCTAT 59.380 47.619 0.00 0.00 0.00 1.98
7131 9709 3.135994 GTGGTTTGTTCCGTCTATGTGT 58.864 45.455 0.00 0.00 0.00 3.72
7135 9713 3.462483 TTGTTCCGTCTATGTGTGTGT 57.538 42.857 0.00 0.00 0.00 3.72
7136 9714 2.749776 TGTTCCGTCTATGTGTGTGTG 58.250 47.619 0.00 0.00 0.00 3.82
7137 9715 1.459592 GTTCCGTCTATGTGTGTGTGC 59.540 52.381 0.00 0.00 0.00 4.57
7159 9737 4.443621 CGGCCAAACCTTTTTCCTTTTTA 58.556 39.130 2.24 0.00 35.61 1.52
7162 9740 6.706716 CGGCCAAACCTTTTTCCTTTTTATTA 59.293 34.615 2.24 0.00 35.61 0.98
7164 9742 9.727859 GGCCAAACCTTTTTCCTTTTTATTATA 57.272 29.630 0.00 0.00 34.51 0.98
7169 9747 9.917129 AACCTTTTTCCTTTTTATTATACCGTG 57.083 29.630 0.00 0.00 0.00 4.94
7170 9748 9.299465 ACCTTTTTCCTTTTTATTATACCGTGA 57.701 29.630 0.00 0.00 0.00 4.35
7308 9892 2.289382 TGTCGTGCATCACCACTAACAT 60.289 45.455 0.00 0.00 33.60 2.71
7309 9893 2.742053 GTCGTGCATCACCACTAACATT 59.258 45.455 0.00 0.00 33.60 2.71
7316 9900 1.621317 TCACCACTAACATTCGCCTCA 59.379 47.619 0.00 0.00 0.00 3.86
7359 9943 2.264120 GAGGAGGCCAGGGCTTCTTC 62.264 65.000 24.95 20.00 44.44 2.87
7365 9949 1.374947 CCAGGGCTTCTTCGGTTCA 59.625 57.895 0.00 0.00 0.00 3.18
7371 9955 1.807142 GGCTTCTTCGGTTCAAAGGAG 59.193 52.381 0.00 0.00 33.22 3.69
7373 9957 2.480802 GCTTCTTCGGTTCAAAGGAGTC 59.519 50.000 0.00 0.00 32.74 3.36
7435 10092 3.073678 CCTGTGATGGTCGTTTGATTCA 58.926 45.455 0.00 0.00 0.00 2.57
7478 10137 5.659440 TTTTCTTCATAGGGTCCATTTGC 57.341 39.130 0.00 0.00 0.00 3.68
7515 10175 8.575649 GAGGAAAATTTCATCCACCTACTTTA 57.424 34.615 9.00 0.00 38.23 1.85
7555 10300 6.353323 TCATTCCTGCGTTTTGATAATCCTA 58.647 36.000 0.00 0.00 0.00 2.94
7578 10323 2.172082 GGTTACGGATTAAAGAGGCCCT 59.828 50.000 0.00 0.00 0.00 5.19
7630 10375 2.556287 GTGTGCGGGCGAAAGAAG 59.444 61.111 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.148623 GGCTAAAACAGTACATGAACAGTAGAC 60.149 40.741 0.00 0.00 0.00 2.59
3 4 6.092259 GGGCTAAAACAGTACATGAACAGTAG 59.908 42.308 0.00 0.00 0.00 2.57
4 5 5.935789 GGGCTAAAACAGTACATGAACAGTA 59.064 40.000 0.00 0.00 0.00 2.74
5 6 4.760204 GGGCTAAAACAGTACATGAACAGT 59.240 41.667 0.00 0.00 0.00 3.55
6 7 4.142902 CGGGCTAAAACAGTACATGAACAG 60.143 45.833 0.00 0.00 0.00 3.16
7 8 3.749088 CGGGCTAAAACAGTACATGAACA 59.251 43.478 0.00 0.00 0.00 3.18
8 9 3.998341 TCGGGCTAAAACAGTACATGAAC 59.002 43.478 0.00 0.00 0.00 3.18
9 10 4.274602 TCGGGCTAAAACAGTACATGAA 57.725 40.909 0.00 0.00 0.00 2.57
10 11 3.965379 TCGGGCTAAAACAGTACATGA 57.035 42.857 0.00 0.00 0.00 3.07
11 12 5.106317 ACAAATCGGGCTAAAACAGTACATG 60.106 40.000 0.00 0.00 0.00 3.21
12 13 5.007682 ACAAATCGGGCTAAAACAGTACAT 58.992 37.500 0.00 0.00 0.00 2.29
13 14 4.391155 ACAAATCGGGCTAAAACAGTACA 58.609 39.130 0.00 0.00 0.00 2.90
14 15 4.694037 AGACAAATCGGGCTAAAACAGTAC 59.306 41.667 0.00 0.00 0.00 2.73
15 16 4.901868 AGACAAATCGGGCTAAAACAGTA 58.098 39.130 0.00 0.00 0.00 2.74
16 17 3.751518 AGACAAATCGGGCTAAAACAGT 58.248 40.909 0.00 0.00 0.00 3.55
17 18 4.766404 AAGACAAATCGGGCTAAAACAG 57.234 40.909 0.00 0.00 0.00 3.16
18 19 5.523438 AAAAGACAAATCGGGCTAAAACA 57.477 34.783 0.00 0.00 0.00 2.83
38 39 1.971481 TGAGCAGCTCTCAGCAAAAA 58.029 45.000 23.15 0.00 46.34 1.94
39 40 3.711937 TGAGCAGCTCTCAGCAAAA 57.288 47.368 23.15 0.00 46.34 2.44
46 47 0.822811 TGGACATCTGAGCAGCTCTC 59.177 55.000 23.15 11.57 42.23 3.20
47 48 1.273759 TTGGACATCTGAGCAGCTCT 58.726 50.000 23.15 2.04 0.00 4.09
48 49 2.105006 TTTGGACATCTGAGCAGCTC 57.895 50.000 16.21 16.21 0.00 4.09
49 50 2.026542 TCATTTGGACATCTGAGCAGCT 60.027 45.455 0.00 0.00 0.00 4.24
50 51 2.097142 GTCATTTGGACATCTGAGCAGC 59.903 50.000 0.00 0.00 46.19 5.25
62 63 5.691305 CGCTTCAAATTTCAAGTCATTTGGA 59.309 36.000 3.65 0.00 39.76 3.53
63 64 5.107375 CCGCTTCAAATTTCAAGTCATTTGG 60.107 40.000 3.65 0.00 39.76 3.28
64 65 5.691305 TCCGCTTCAAATTTCAAGTCATTTG 59.309 36.000 3.65 0.00 40.39 2.32
65 66 5.691754 GTCCGCTTCAAATTTCAAGTCATTT 59.308 36.000 3.65 0.00 0.00 2.32
66 67 5.222631 GTCCGCTTCAAATTTCAAGTCATT 58.777 37.500 3.65 0.00 0.00 2.57
67 68 4.321230 GGTCCGCTTCAAATTTCAAGTCAT 60.321 41.667 3.65 0.00 0.00 3.06
68 69 3.004315 GGTCCGCTTCAAATTTCAAGTCA 59.996 43.478 3.65 0.00 0.00 3.41
69 70 3.565516 GGTCCGCTTCAAATTTCAAGTC 58.434 45.455 3.65 0.00 0.00 3.01
70 71 2.031157 CGGTCCGCTTCAAATTTCAAGT 60.031 45.455 3.65 0.00 0.00 3.16
71 72 2.584791 CGGTCCGCTTCAAATTTCAAG 58.415 47.619 0.00 0.00 0.00 3.02
72 73 2.697431 CGGTCCGCTTCAAATTTCAA 57.303 45.000 0.00 0.00 0.00 2.69
85 86 0.521291 AATTTGATGTGTGCGGTCCG 59.479 50.000 6.99 6.99 0.00 4.79
86 87 1.269448 ACAATTTGATGTGTGCGGTCC 59.731 47.619 2.79 0.00 30.82 4.46
87 88 2.226437 AGACAATTTGATGTGTGCGGTC 59.774 45.455 2.79 0.00 32.57 4.79
88 89 2.229792 AGACAATTTGATGTGTGCGGT 58.770 42.857 2.79 0.00 32.57 5.68
89 90 2.995466 AGACAATTTGATGTGTGCGG 57.005 45.000 2.79 0.00 32.57 5.69
90 91 3.724716 CGGTAGACAATTTGATGTGTGCG 60.725 47.826 2.79 0.00 31.39 5.34
91 92 3.747193 CGGTAGACAATTTGATGTGTGC 58.253 45.455 2.79 0.00 32.57 4.57
92 93 3.188254 TGCGGTAGACAATTTGATGTGTG 59.812 43.478 2.79 0.00 32.57 3.82
93 94 3.188460 GTGCGGTAGACAATTTGATGTGT 59.812 43.478 2.79 0.00 32.57 3.72
94 95 3.188254 TGTGCGGTAGACAATTTGATGTG 59.812 43.478 2.79 0.00 32.57 3.21
95 96 3.407698 TGTGCGGTAGACAATTTGATGT 58.592 40.909 2.79 0.00 35.90 3.06
96 97 4.621068 ATGTGCGGTAGACAATTTGATG 57.379 40.909 2.79 0.00 0.00 3.07
97 98 5.643379 AAATGTGCGGTAGACAATTTGAT 57.357 34.783 2.79 0.00 0.00 2.57
98 99 5.446143 AAAATGTGCGGTAGACAATTTGA 57.554 34.783 2.79 0.00 27.72 2.69
139 140 9.945904 ACCTGGTTAGAAAACAATTTGTAAAAA 57.054 25.926 1.76 0.00 36.41 1.94
140 141 9.372369 CACCTGGTTAGAAAACAATTTGTAAAA 57.628 29.630 1.76 0.00 36.41 1.52
141 142 7.492994 GCACCTGGTTAGAAAACAATTTGTAAA 59.507 33.333 1.76 0.00 36.41 2.01
142 143 6.981559 GCACCTGGTTAGAAAACAATTTGTAA 59.018 34.615 1.76 0.00 37.34 2.41
143 144 6.096987 TGCACCTGGTTAGAAAACAATTTGTA 59.903 34.615 1.76 0.00 37.34 2.41
144 145 5.105146 TGCACCTGGTTAGAAAACAATTTGT 60.105 36.000 0.00 0.00 37.34 2.83
145 146 5.355596 TGCACCTGGTTAGAAAACAATTTG 58.644 37.500 0.00 0.00 37.34 2.32
146 147 5.362430 TCTGCACCTGGTTAGAAAACAATTT 59.638 36.000 0.00 0.00 37.34 1.82
147 148 4.892934 TCTGCACCTGGTTAGAAAACAATT 59.107 37.500 0.00 0.00 37.34 2.32
148 149 4.469657 TCTGCACCTGGTTAGAAAACAAT 58.530 39.130 0.00 0.00 37.34 2.71
149 150 3.892284 TCTGCACCTGGTTAGAAAACAA 58.108 40.909 0.00 0.00 37.34 2.83
150 151 3.569194 TCTGCACCTGGTTAGAAAACA 57.431 42.857 0.00 0.00 37.34 2.83
151 152 4.072131 TCATCTGCACCTGGTTAGAAAAC 58.928 43.478 12.91 0.00 34.66 2.43
152 153 4.326826 CTCATCTGCACCTGGTTAGAAAA 58.673 43.478 12.91 5.48 0.00 2.29
153 154 3.869912 GCTCATCTGCACCTGGTTAGAAA 60.870 47.826 12.91 5.75 0.00 2.52
154 155 2.355108 GCTCATCTGCACCTGGTTAGAA 60.355 50.000 12.91 0.16 0.00 2.10
155 156 1.208052 GCTCATCTGCACCTGGTTAGA 59.792 52.381 11.67 11.67 0.00 2.10
156 157 1.209019 AGCTCATCTGCACCTGGTTAG 59.791 52.381 0.00 0.00 34.99 2.34
157 158 1.065926 CAGCTCATCTGCACCTGGTTA 60.066 52.381 0.00 0.00 35.78 2.85
158 159 0.322277 CAGCTCATCTGCACCTGGTT 60.322 55.000 0.00 0.00 35.78 3.67
159 160 1.298993 CAGCTCATCTGCACCTGGT 59.701 57.895 0.00 0.00 35.78 4.00
160 161 1.451567 CCAGCTCATCTGCACCTGG 60.452 63.158 0.00 0.00 41.50 4.45
161 162 1.451567 CCCAGCTCATCTGCACCTG 60.452 63.158 0.00 0.00 41.50 4.00
162 163 2.996395 CCCAGCTCATCTGCACCT 59.004 61.111 0.00 0.00 41.50 4.00
163 164 2.827642 GCCCAGCTCATCTGCACC 60.828 66.667 0.00 0.00 41.50 5.01
164 165 2.045634 TGCCCAGCTCATCTGCAC 60.046 61.111 0.00 0.00 41.50 4.57
165 166 2.045634 GTGCCCAGCTCATCTGCA 60.046 61.111 0.00 0.00 41.50 4.41
166 167 2.827642 GGTGCCCAGCTCATCTGC 60.828 66.667 0.00 0.00 41.50 4.26
167 168 2.513204 CGGTGCCCAGCTCATCTG 60.513 66.667 0.00 0.00 42.49 2.90
168 169 1.841302 TTTCGGTGCCCAGCTCATCT 61.841 55.000 0.00 0.00 0.00 2.90
169 170 1.377202 TTTCGGTGCCCAGCTCATC 60.377 57.895 0.00 0.00 0.00 2.92
170 171 1.675641 GTTTCGGTGCCCAGCTCAT 60.676 57.895 0.00 0.00 0.00 2.90
171 172 2.281484 GTTTCGGTGCCCAGCTCA 60.281 61.111 0.00 0.00 0.00 4.26
172 173 3.423154 CGTTTCGGTGCCCAGCTC 61.423 66.667 0.00 0.00 0.00 4.09
179 180 2.047560 AGTAGGGCGTTTCGGTGC 60.048 61.111 0.00 0.00 0.00 5.01
180 181 0.813184 TAGAGTAGGGCGTTTCGGTG 59.187 55.000 0.00 0.00 0.00 4.94
181 182 1.772836 ATAGAGTAGGGCGTTTCGGT 58.227 50.000 0.00 0.00 0.00 4.69
182 183 2.470821 CAATAGAGTAGGGCGTTTCGG 58.529 52.381 0.00 0.00 0.00 4.30
183 184 1.859080 GCAATAGAGTAGGGCGTTTCG 59.141 52.381 0.00 0.00 0.00 3.46
184 185 2.866762 CTGCAATAGAGTAGGGCGTTTC 59.133 50.000 0.00 0.00 0.00 2.78
185 186 2.906354 CTGCAATAGAGTAGGGCGTTT 58.094 47.619 0.00 0.00 0.00 3.60
186 187 1.473434 GCTGCAATAGAGTAGGGCGTT 60.473 52.381 0.00 0.00 0.00 4.84
187 188 0.105039 GCTGCAATAGAGTAGGGCGT 59.895 55.000 0.00 0.00 0.00 5.68
188 189 0.601311 GGCTGCAATAGAGTAGGGCG 60.601 60.000 0.50 0.00 0.00 6.13
189 190 0.761802 AGGCTGCAATAGAGTAGGGC 59.238 55.000 0.50 0.00 0.00 5.19
190 191 3.235200 ACTAGGCTGCAATAGAGTAGGG 58.765 50.000 15.43 0.00 0.00 3.53
191 192 7.889873 ATATACTAGGCTGCAATAGAGTAGG 57.110 40.000 15.43 0.00 0.00 3.18
192 193 9.579768 CAAATATACTAGGCTGCAATAGAGTAG 57.420 37.037 15.43 2.03 0.00 2.57
193 194 8.035394 GCAAATATACTAGGCTGCAATAGAGTA 58.965 37.037 15.43 8.75 0.00 2.59
194 195 6.876257 GCAAATATACTAGGCTGCAATAGAGT 59.124 38.462 15.43 7.11 0.00 3.24
195 196 7.102346 AGCAAATATACTAGGCTGCAATAGAG 58.898 38.462 15.43 2.04 32.76 2.43
196 197 7.009179 AGCAAATATACTAGGCTGCAATAGA 57.991 36.000 15.43 3.20 32.76 1.98
197 198 8.777865 TTAGCAAATATACTAGGCTGCAATAG 57.222 34.615 0.50 5.79 36.10 1.73
198 199 8.593679 TCTTAGCAAATATACTAGGCTGCAATA 58.406 33.333 0.50 0.00 36.10 1.90
199 200 7.453393 TCTTAGCAAATATACTAGGCTGCAAT 58.547 34.615 0.50 0.00 36.10 3.56
200 201 6.826668 TCTTAGCAAATATACTAGGCTGCAA 58.173 36.000 0.50 0.00 36.10 4.08
201 202 6.419484 TCTTAGCAAATATACTAGGCTGCA 57.581 37.500 0.50 0.00 36.10 4.41
202 203 7.492994 GGTATCTTAGCAAATATACTAGGCTGC 59.507 40.741 0.00 0.00 36.10 5.25
203 204 8.531982 TGGTATCTTAGCAAATATACTAGGCTG 58.468 37.037 0.00 0.00 36.10 4.85
204 205 8.666129 TGGTATCTTAGCAAATATACTAGGCT 57.334 34.615 0.00 0.00 38.55 4.58
205 206 9.892130 AATGGTATCTTAGCAAATATACTAGGC 57.108 33.333 0.00 0.00 39.89 3.93
400 408 8.685838 ATACAAGTTTAACTAGAGCCAAACAA 57.314 30.769 0.00 0.00 34.15 2.83
455 463 9.788960 CTCTCTTTTTAATACTGCAAAATACCC 57.211 33.333 0.00 0.00 0.00 3.69
465 473 8.527810 AGGTCTCTGTCTCTCTTTTTAATACTG 58.472 37.037 0.00 0.00 0.00 2.74
520 531 5.654603 TCTATTGGAGAGAGCGTTTGTTA 57.345 39.130 0.00 0.00 0.00 2.41
540 551 9.686683 AAAATAGTAGCAATGTATTTGGACTCT 57.313 29.630 0.00 0.00 35.75 3.24
582 593 7.125356 GGAAAGGAGGGAGTATTAGTTTACAGA 59.875 40.741 0.00 0.00 0.00 3.41
583 594 7.125963 AGGAAAGGAGGGAGTATTAGTTTACAG 59.874 40.741 0.00 0.00 0.00 2.74
584 595 6.964086 AGGAAAGGAGGGAGTATTAGTTTACA 59.036 38.462 0.00 0.00 0.00 2.41
586 597 9.564961 TTTAGGAAAGGAGGGAGTATTAGTTTA 57.435 33.333 0.00 0.00 0.00 2.01
587 598 8.458951 TTTAGGAAAGGAGGGAGTATTAGTTT 57.541 34.615 0.00 0.00 0.00 2.66
592 603 9.868160 CAAATATTTAGGAAAGGAGGGAGTATT 57.132 33.333 0.00 0.00 0.00 1.89
594 605 8.401955 ACAAATATTTAGGAAAGGAGGGAGTA 57.598 34.615 0.00 0.00 0.00 2.59
595 606 7.184753 AGACAAATATTTAGGAAAGGAGGGAGT 59.815 37.037 0.00 0.00 0.00 3.85
596 607 7.578203 AGACAAATATTTAGGAAAGGAGGGAG 58.422 38.462 0.00 0.00 0.00 4.30
597 608 7.525158 AGACAAATATTTAGGAAAGGAGGGA 57.475 36.000 0.00 0.00 0.00 4.20
598 609 8.595362 AAAGACAAATATTTAGGAAAGGAGGG 57.405 34.615 0.00 0.00 0.00 4.30
599 610 9.467796 AGAAAGACAAATATTTAGGAAAGGAGG 57.532 33.333 0.00 0.00 0.00 4.30
612 623 9.453572 TGTTGCAATCTCTAGAAAGACAAATAT 57.546 29.630 0.59 0.00 0.00 1.28
613 624 8.846943 TGTTGCAATCTCTAGAAAGACAAATA 57.153 30.769 0.59 0.00 0.00 1.40
614 625 7.750229 TGTTGCAATCTCTAGAAAGACAAAT 57.250 32.000 0.59 0.00 0.00 2.32
615 626 7.283127 ACTTGTTGCAATCTCTAGAAAGACAAA 59.717 33.333 0.59 0.00 0.00 2.83
616 627 6.767902 ACTTGTTGCAATCTCTAGAAAGACAA 59.232 34.615 0.59 0.00 0.00 3.18
617 628 6.203530 CACTTGTTGCAATCTCTAGAAAGACA 59.796 38.462 0.59 0.00 0.00 3.41
618 629 6.425114 TCACTTGTTGCAATCTCTAGAAAGAC 59.575 38.462 0.59 0.00 0.00 3.01
619 630 6.425114 GTCACTTGTTGCAATCTCTAGAAAGA 59.575 38.462 0.59 0.00 0.00 2.52
620 631 6.426328 AGTCACTTGTTGCAATCTCTAGAAAG 59.574 38.462 0.59 0.19 0.00 2.62
621 632 6.291377 AGTCACTTGTTGCAATCTCTAGAAA 58.709 36.000 0.59 0.00 0.00 2.52
622 633 5.858381 AGTCACTTGTTGCAATCTCTAGAA 58.142 37.500 0.59 0.00 0.00 2.10
623 634 5.474578 AGTCACTTGTTGCAATCTCTAGA 57.525 39.130 0.59 0.00 0.00 2.43
624 635 6.159293 TGTAGTCACTTGTTGCAATCTCTAG 58.841 40.000 0.59 0.00 0.00 2.43
625 636 6.096673 TGTAGTCACTTGTTGCAATCTCTA 57.903 37.500 0.59 0.00 0.00 2.43
626 637 4.960938 TGTAGTCACTTGTTGCAATCTCT 58.039 39.130 0.59 0.00 0.00 3.10
627 638 5.869753 ATGTAGTCACTTGTTGCAATCTC 57.130 39.130 0.59 0.00 0.00 2.75
628 639 6.230472 TGTATGTAGTCACTTGTTGCAATCT 58.770 36.000 0.59 0.00 0.00 2.40
629 640 6.368791 TCTGTATGTAGTCACTTGTTGCAATC 59.631 38.462 0.59 0.00 0.00 2.67
630 641 6.230472 TCTGTATGTAGTCACTTGTTGCAAT 58.770 36.000 0.59 0.00 0.00 3.56
631 642 5.606505 TCTGTATGTAGTCACTTGTTGCAA 58.393 37.500 0.00 0.00 0.00 4.08
632 643 5.208463 TCTGTATGTAGTCACTTGTTGCA 57.792 39.130 0.00 0.00 0.00 4.08
633 644 4.092091 GCTCTGTATGTAGTCACTTGTTGC 59.908 45.833 0.00 0.00 0.00 4.17
634 645 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
635 646 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
636 647 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
637 648 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
638 649 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
639 650 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
640 651 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
641 652 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
642 653 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
643 654 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
644 655 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
645 656 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
646 657 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
647 658 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
648 659 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
649 660 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
650 661 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
651 662 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
652 663 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
653 664 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
682 693 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
684 695 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
685 696 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
686 697 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
687 698 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
688 699 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
689 700 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
690 701 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
691 702 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
692 703 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
693 704 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
709 720 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
710 721 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
727 738 9.074576 ACTCCGTTCCTAAATATTTGTCTTTTT 57.925 29.630 11.05 0.00 0.00 1.94
728 739 8.512138 CACTCCGTTCCTAAATATTTGTCTTTT 58.488 33.333 11.05 0.00 0.00 2.27
729 740 7.881232 TCACTCCGTTCCTAAATATTTGTCTTT 59.119 33.333 11.05 0.00 0.00 2.52
730 741 7.391620 TCACTCCGTTCCTAAATATTTGTCTT 58.608 34.615 11.05 0.00 0.00 3.01
731 742 6.942976 TCACTCCGTTCCTAAATATTTGTCT 58.057 36.000 11.05 0.00 0.00 3.41
732 743 6.817140 ACTCACTCCGTTCCTAAATATTTGTC 59.183 38.462 11.05 0.00 0.00 3.18
733 744 6.708285 ACTCACTCCGTTCCTAAATATTTGT 58.292 36.000 11.05 0.00 0.00 2.83
734 745 8.888579 ATACTCACTCCGTTCCTAAATATTTG 57.111 34.615 11.05 1.40 0.00 2.32
737 748 9.584008 TCTTATACTCACTCCGTTCCTAAATAT 57.416 33.333 0.00 0.00 0.00 1.28
738 749 8.844244 GTCTTATACTCACTCCGTTCCTAAATA 58.156 37.037 0.00 0.00 0.00 1.40
739 750 7.341256 TGTCTTATACTCACTCCGTTCCTAAAT 59.659 37.037 0.00 0.00 0.00 1.40
740 751 6.660521 TGTCTTATACTCACTCCGTTCCTAAA 59.339 38.462 0.00 0.00 0.00 1.85
741 752 6.182627 TGTCTTATACTCACTCCGTTCCTAA 58.817 40.000 0.00 0.00 0.00 2.69
742 753 5.748402 TGTCTTATACTCACTCCGTTCCTA 58.252 41.667 0.00 0.00 0.00 2.94
743 754 4.597004 TGTCTTATACTCACTCCGTTCCT 58.403 43.478 0.00 0.00 0.00 3.36
744 755 4.978083 TGTCTTATACTCACTCCGTTCC 57.022 45.455 0.00 0.00 0.00 3.62
745 756 7.829378 AAAATGTCTTATACTCACTCCGTTC 57.171 36.000 0.00 0.00 0.00 3.95
746 757 9.314321 CATAAAATGTCTTATACTCACTCCGTT 57.686 33.333 0.00 0.00 0.00 4.44
747 758 8.475639 ACATAAAATGTCTTATACTCACTCCGT 58.524 33.333 0.00 0.00 39.92 4.69
748 759 8.873215 ACATAAAATGTCTTATACTCACTCCG 57.127 34.615 0.00 0.00 39.92 4.63
850 1015 4.363991 AGGTTGAGACTCTTGAAGCATT 57.636 40.909 3.68 0.00 0.00 3.56
851 1016 4.363991 AAGGTTGAGACTCTTGAAGCAT 57.636 40.909 3.68 0.00 0.00 3.79
858 1023 5.799213 CAGGAACATAAGGTTGAGACTCTT 58.201 41.667 3.68 0.00 40.63 2.85
877 1042 2.032528 CCCGTCAAGCAAGCAGGA 59.967 61.111 0.00 0.00 0.00 3.86
936 1102 2.630580 AGTGTGGGAGAAGAGTTGAGTC 59.369 50.000 0.00 0.00 0.00 3.36
1083 1249 0.395724 GGGTTGGGTATTGCTGGGAG 60.396 60.000 0.00 0.00 0.00 4.30
1107 1273 1.359833 CGGCGCGGTAATACTGGTA 59.640 57.895 8.83 0.00 0.00 3.25
1215 1381 1.405872 TCCGCCATACGTACCTGAAT 58.594 50.000 0.00 0.00 41.42 2.57
1438 1604 1.625818 ACCCTAGCTCCAGTTCACAAG 59.374 52.381 0.00 0.00 0.00 3.16
1468 1634 3.191371 ACCAAATCACCGAGCTCAAATTC 59.809 43.478 15.40 0.00 0.00 2.17
1469 1635 3.157087 ACCAAATCACCGAGCTCAAATT 58.843 40.909 15.40 4.43 0.00 1.82
1470 1636 2.795329 ACCAAATCACCGAGCTCAAAT 58.205 42.857 15.40 0.00 0.00 2.32
1471 1637 2.270352 ACCAAATCACCGAGCTCAAA 57.730 45.000 15.40 0.00 0.00 2.69
1472 1638 3.410631 TTACCAAATCACCGAGCTCAA 57.589 42.857 15.40 0.00 0.00 3.02
1473 1639 3.627395 ATTACCAAATCACCGAGCTCA 57.373 42.857 15.40 0.00 0.00 4.26
1474 1640 5.357257 TCTAATTACCAAATCACCGAGCTC 58.643 41.667 2.73 2.73 0.00 4.09
1475 1641 5.353394 TCTAATTACCAAATCACCGAGCT 57.647 39.130 0.00 0.00 0.00 4.09
1476 1642 5.007724 CCTTCTAATTACCAAATCACCGAGC 59.992 44.000 0.00 0.00 0.00 5.03
1477 1643 5.527582 CCCTTCTAATTACCAAATCACCGAG 59.472 44.000 0.00 0.00 0.00 4.63
1478 1644 5.045432 ACCCTTCTAATTACCAAATCACCGA 60.045 40.000 0.00 0.00 0.00 4.69
1479 1645 5.190677 ACCCTTCTAATTACCAAATCACCG 58.809 41.667 0.00 0.00 0.00 4.94
1480 1646 7.476540 AAACCCTTCTAATTACCAAATCACC 57.523 36.000 0.00 0.00 0.00 4.02
1495 1661 9.056005 GCTCAAATTCAAAATTAAAACCCTTCT 57.944 29.630 0.00 0.00 0.00 2.85
1496 1662 9.056005 AGCTCAAATTCAAAATTAAAACCCTTC 57.944 29.630 0.00 0.00 0.00 3.46
1497 1663 8.978874 AGCTCAAATTCAAAATTAAAACCCTT 57.021 26.923 0.00 0.00 0.00 3.95
1498 1664 8.210265 TGAGCTCAAATTCAAAATTAAAACCCT 58.790 29.630 15.67 0.00 0.00 4.34
1499 1665 8.376889 TGAGCTCAAATTCAAAATTAAAACCC 57.623 30.769 15.67 0.00 0.00 4.11
1500 1666 9.045223 ACTGAGCTCAAATTCAAAATTAAAACC 57.955 29.630 18.85 0.00 0.00 3.27
1501 1667 9.853921 CACTGAGCTCAAATTCAAAATTAAAAC 57.146 29.630 18.85 0.00 0.00 2.43
1502 1668 9.814899 TCACTGAGCTCAAATTCAAAATTAAAA 57.185 25.926 18.85 0.00 0.00 1.52
1503 1669 9.985730 ATCACTGAGCTCAAATTCAAAATTAAA 57.014 25.926 18.85 0.00 0.00 1.52
1504 1670 9.985730 AATCACTGAGCTCAAATTCAAAATTAA 57.014 25.926 18.85 0.00 0.00 1.40
1505 1671 9.985730 AAATCACTGAGCTCAAATTCAAAATTA 57.014 25.926 18.85 0.00 0.00 1.40
1506 1672 8.770828 CAAATCACTGAGCTCAAATTCAAAATT 58.229 29.630 18.85 6.42 0.00 1.82
1507 1673 7.386848 CCAAATCACTGAGCTCAAATTCAAAAT 59.613 33.333 18.85 0.55 0.00 1.82
1508 1674 6.702723 CCAAATCACTGAGCTCAAATTCAAAA 59.297 34.615 18.85 0.00 0.00 2.44
1509 1675 6.183360 ACCAAATCACTGAGCTCAAATTCAAA 60.183 34.615 18.85 0.00 0.00 2.69
1510 1676 5.302568 ACCAAATCACTGAGCTCAAATTCAA 59.697 36.000 18.85 0.73 0.00 2.69
1511 1677 4.828939 ACCAAATCACTGAGCTCAAATTCA 59.171 37.500 18.85 0.36 0.00 2.57
1563 1729 6.825721 CCTTCTAATTACCAAATCACTGAGCT 59.174 38.462 0.00 0.00 0.00 4.09
1571 1737 9.586435 CATCAAAACCCTTCTAATTACCAAATC 57.414 33.333 0.00 0.00 0.00 2.17
1578 1744 9.362151 AGAAACACATCAAAACCCTTCTAATTA 57.638 29.630 0.00 0.00 0.00 1.40
1797 1965 5.768980 TGGCCATCCAATCCAAAAATAAA 57.231 34.783 0.00 0.00 39.99 1.40
1826 1994 3.493129 TCTCAAACTGTTTTCGATCCACG 59.507 43.478 2.41 0.00 44.09 4.94
1875 2043 7.818930 CCAGAAGCTGCATATTTCCTTTAAAAA 59.181 33.333 1.02 0.00 0.00 1.94
1876 2044 7.039082 ACCAGAAGCTGCATATTTCCTTTAAAA 60.039 33.333 1.02 0.00 0.00 1.52
1877 2045 6.437162 ACCAGAAGCTGCATATTTCCTTTAAA 59.563 34.615 1.02 0.00 0.00 1.52
1878 2046 5.951747 ACCAGAAGCTGCATATTTCCTTTAA 59.048 36.000 1.02 0.00 0.00 1.52
1879 2047 5.509498 ACCAGAAGCTGCATATTTCCTTTA 58.491 37.500 1.02 0.00 0.00 1.85
1880 2048 4.347607 ACCAGAAGCTGCATATTTCCTTT 58.652 39.130 1.02 0.00 0.00 3.11
1881 2049 3.950395 GACCAGAAGCTGCATATTTCCTT 59.050 43.478 1.02 0.00 0.00 3.36
1882 2050 3.549794 GACCAGAAGCTGCATATTTCCT 58.450 45.455 1.02 0.00 0.00 3.36
1883 2051 2.289002 CGACCAGAAGCTGCATATTTCC 59.711 50.000 1.02 0.00 0.00 3.13
1884 2052 3.198068 TCGACCAGAAGCTGCATATTTC 58.802 45.455 1.02 0.00 0.00 2.17
1885 2053 3.266510 TCGACCAGAAGCTGCATATTT 57.733 42.857 1.02 0.00 0.00 1.40
1886 2054 2.988010 TCGACCAGAAGCTGCATATT 57.012 45.000 1.02 0.00 0.00 1.28
1887 2055 2.988010 TTCGACCAGAAGCTGCATAT 57.012 45.000 1.02 0.00 34.26 1.78
1888 2056 2.093500 ACATTCGACCAGAAGCTGCATA 60.093 45.455 1.02 0.00 42.92 3.14
1889 2057 1.339438 ACATTCGACCAGAAGCTGCAT 60.339 47.619 1.02 0.00 42.92 3.96
1890 2058 0.035317 ACATTCGACCAGAAGCTGCA 59.965 50.000 1.02 0.00 42.92 4.41
1891 2059 0.445436 CACATTCGACCAGAAGCTGC 59.555 55.000 0.00 0.00 42.92 5.25
1892 2060 1.081892 CCACATTCGACCAGAAGCTG 58.918 55.000 0.00 0.00 42.92 4.24
1893 2061 0.687354 ACCACATTCGACCAGAAGCT 59.313 50.000 0.00 0.00 42.92 3.74
1894 2062 1.523758 AACCACATTCGACCAGAAGC 58.476 50.000 0.00 0.00 42.92 3.86
1895 2063 3.138304 TGAAACCACATTCGACCAGAAG 58.862 45.455 0.00 0.00 42.92 2.85
1934 2125 3.078837 ACCACAAACATACCAACCGATC 58.921 45.455 0.00 0.00 0.00 3.69
1937 2128 1.335506 GCACCACAAACATACCAACCG 60.336 52.381 0.00 0.00 0.00 4.44
2012 2203 3.259123 GGAAATGGTGTGGAAATTCAGCT 59.741 43.478 0.00 0.00 33.89 4.24
2035 2226 2.107366 CCCAACCGGATGGCTATTTTT 58.893 47.619 24.80 0.00 39.26 1.94
2052 2243 3.007074 TGAACGTACAGATGTTAAGCCCA 59.993 43.478 0.00 0.00 34.83 5.36
2053 2244 3.592059 TGAACGTACAGATGTTAAGCCC 58.408 45.455 0.00 0.00 34.83 5.19
2070 2261 8.863049 CCATCAATTTAGCATTTGTAACTGAAC 58.137 33.333 0.00 0.00 0.00 3.18
2079 2270 5.751990 GGAAGCTCCATCAATTTAGCATTTG 59.248 40.000 0.00 0.00 36.28 2.32
2144 2335 1.473677 TCCTGCATTTCAATCAAGGCG 59.526 47.619 0.00 0.00 0.00 5.52
2148 2339 4.877378 AAAGCTCCTGCATTTCAATCAA 57.123 36.364 0.00 0.00 42.74 2.57
2316 2507 7.914427 AACCCAAATATATCCTCCCTTTTTC 57.086 36.000 0.00 0.00 0.00 2.29
2351 2542 4.657236 GAGTCAACTCCTGCAAGAGCAAG 61.657 52.174 12.37 2.90 41.54 4.01
2352 2543 2.808202 GAGTCAACTCCTGCAAGAGCAA 60.808 50.000 12.37 0.00 41.54 3.91
2414 2605 1.416401 GACCTGGACTCCACAAACTGA 59.584 52.381 0.00 0.00 0.00 3.41
2456 2647 0.104855 CTGCCGCTAGAGCATGGTTA 59.895 55.000 8.18 0.00 40.04 2.85
2558 2749 1.705186 TCCTTCTCCCACTTTCCCAAG 59.295 52.381 0.00 0.00 35.92 3.61
2679 2870 8.011844 TCACATAGAAGCACTAATACTGTCAT 57.988 34.615 0.00 0.00 34.56 3.06
2924 3115 1.590932 ATGAACTCATCATCCGCTGC 58.409 50.000 0.00 0.00 45.91 5.25
3095 3286 3.972227 CCAGGTCTGTTTGGCTCG 58.028 61.111 0.00 0.00 0.00 5.03
3168 4690 4.777896 ACAAGCTATGAAGAACTGGACCTA 59.222 41.667 0.00 0.00 0.00 3.08
3372 4894 7.283127 TGCCTCAGTCCTAAAATTGAATGATAC 59.717 37.037 0.00 0.00 35.35 2.24
3382 4904 3.589288 AGGAAGTGCCTCAGTCCTAAAAT 59.411 43.478 0.00 0.00 46.97 1.82
3419 4941 6.496565 AGAAGACACAGCTAGCCAATATAGAT 59.503 38.462 12.13 0.00 0.00 1.98
3459 4981 5.762045 CTGCAAACAAGCTTACTAACACAT 58.238 37.500 0.00 0.00 34.99 3.21
3627 5170 6.875972 AGGTAAATACAGAGAACAGTGGAT 57.124 37.500 0.00 0.00 0.00 3.41
3654 5197 2.806434 AGACACAAATATGCCCAGCAA 58.194 42.857 0.00 0.00 43.62 3.91
3802 5348 1.236616 TTGTCAGAATGGTGGCAGCG 61.237 55.000 12.58 0.00 32.51 5.18
3965 5511 5.392767 TCGTCAGCTTAGAGTTTTCTGAT 57.607 39.130 0.00 0.00 36.37 2.90
4321 5867 1.625616 ACAGACTACGCGCACATAAC 58.374 50.000 5.73 0.00 0.00 1.89
4434 5980 5.869350 ACTAGTGCGAGAAAAATAACATGC 58.131 37.500 0.00 0.00 0.00 4.06
4583 6130 7.065324 ACGAGAAACAAAGAGACAACAACATAA 59.935 33.333 0.00 0.00 0.00 1.90
4630 6177 5.187687 TCAATTATCATGACAAGAGCTGCA 58.812 37.500 0.00 0.00 0.00 4.41
4889 6436 1.876156 CACAGTCCAAGTCTTTCAGGC 59.124 52.381 0.00 0.00 0.00 4.85
5034 6581 6.925610 TCACTATCACAGGATAAATGCAAC 57.074 37.500 0.00 0.00 35.64 4.17
5073 6620 3.159472 GGCCATGGAATCTGCAATATCA 58.841 45.455 18.40 0.00 0.00 2.15
5251 6800 6.567512 GTCGATGTGAGTACGTAAACAAAAAC 59.432 38.462 10.08 6.09 0.00 2.43
5274 6823 4.380531 TGTTTGAGAGGTTGACATCAGTC 58.619 43.478 0.00 0.00 45.19 3.51
5566 7115 4.639310 TGTTGGAGGTGCGTTAACTTAAAA 59.361 37.500 3.71 0.00 0.00 1.52
5567 7116 4.197750 TGTTGGAGGTGCGTTAACTTAAA 58.802 39.130 3.71 0.00 0.00 1.52
5806 7368 8.791675 TGTTCATTGAATTAAGCACATAGTTCA 58.208 29.630 1.78 0.00 31.94 3.18
5833 7395 3.318557 TCATGACAACAAGCAATCAAGCA 59.681 39.130 0.00 0.00 36.85 3.91
5840 7402 5.062528 TGTACAGATCATGACAACAAGCAA 58.937 37.500 0.00 0.00 0.00 3.91
5901 7463 3.318557 TCATGACAACAAGCAATCAAGCA 59.681 39.130 0.00 0.00 36.85 3.91
5908 7470 5.062528 TGTACAGATCATGACAACAAGCAA 58.937 37.500 0.00 0.00 0.00 3.91
5985 7547 5.948758 TGAACTATGGCCACATGTTGATAAA 59.051 36.000 20.12 3.28 37.97 1.40
5991 7553 2.825532 GGTTGAACTATGGCCACATGTT 59.174 45.455 8.16 13.83 37.97 2.71
6104 7666 9.255304 GGTTAATAAATTTGCAAAACTCAGTCA 57.745 29.630 17.19 0.00 0.00 3.41
6214 8737 2.548493 CCAAATGGTGCCCACTTCAAAG 60.548 50.000 0.00 0.00 35.80 2.77
6222 8745 0.975040 GGTATGCCAAATGGTGCCCA 60.975 55.000 0.71 0.00 37.57 5.36
6288 8811 4.449068 CGCTTTCAGCTTCTCAACTTTCTA 59.551 41.667 0.00 0.00 39.60 2.10
6311 8834 5.276254 GGAAGTCGCGTATTGAAGACATAAC 60.276 44.000 5.77 0.00 36.18 1.89
6372 8895 2.286067 CGGATTTCGATTTGCTCTCAGC 60.286 50.000 0.00 0.00 40.93 4.26
6536 9060 3.942748 GGTGTGTTACAAACCTGAACTGA 59.057 43.478 16.98 0.00 38.64 3.41
6643 9167 1.819632 CAGGTATGGTTCGGCCTGC 60.820 63.158 0.00 0.00 41.46 4.85
6655 9179 2.041976 CGCGAGATGGGTCAGGTAT 58.958 57.895 0.00 0.00 0.00 2.73
6720 9244 1.133025 GCAACCATCCGAACATGGAAG 59.867 52.381 13.21 7.26 45.79 3.46
6802 9326 2.253154 CGTACACCAGCGTCGACA 59.747 61.111 17.16 0.00 0.00 4.35
6892 9416 5.594317 CAGCTAATTAAAGCCTACCAACCAT 59.406 40.000 0.00 0.00 43.86 3.55
6893 9417 4.947388 CAGCTAATTAAAGCCTACCAACCA 59.053 41.667 0.00 0.00 43.86 3.67
6895 9419 4.948004 ACCAGCTAATTAAAGCCTACCAAC 59.052 41.667 0.00 0.00 43.86 3.77
6897 9421 4.523083 CACCAGCTAATTAAAGCCTACCA 58.477 43.478 0.00 0.00 43.86 3.25
6898 9422 3.315470 GCACCAGCTAATTAAAGCCTACC 59.685 47.826 0.00 0.00 43.86 3.18
6899 9423 4.553756 GCACCAGCTAATTAAAGCCTAC 57.446 45.455 0.00 0.00 43.86 3.18
6952 9480 0.381801 CACAAACACACCACCAGAGC 59.618 55.000 0.00 0.00 0.00 4.09
7126 9704 2.124060 TTTGGCCGCACACACACAT 61.124 52.632 0.00 0.00 0.00 3.21
7127 9705 2.751837 TTTGGCCGCACACACACA 60.752 55.556 0.00 0.00 0.00 3.72
7131 9709 1.608717 AAAAGGTTTGGCCGCACACA 61.609 50.000 0.00 0.00 43.70 3.72
7135 9713 1.045911 AGGAAAAAGGTTTGGCCGCA 61.046 50.000 0.00 0.00 43.70 5.69
7136 9714 0.105964 AAGGAAAAAGGTTTGGCCGC 59.894 50.000 0.00 0.00 43.70 6.53
7137 9715 2.613026 AAAGGAAAAAGGTTTGGCCG 57.387 45.000 0.00 0.00 43.70 6.13
7166 9744 1.660575 GGCCGATCACCGTATCACG 60.661 63.158 0.00 0.00 42.11 4.35
7167 9745 0.179094 TTGGCCGATCACCGTATCAC 60.179 55.000 0.00 0.00 36.31 3.06
7169 9747 0.935196 GTTTGGCCGATCACCGTATC 59.065 55.000 0.00 0.00 36.31 2.24
7170 9748 0.539986 AGTTTGGCCGATCACCGTAT 59.460 50.000 0.00 0.00 36.31 3.06
7171 9749 0.390603 CAGTTTGGCCGATCACCGTA 60.391 55.000 0.00 0.00 36.31 4.02
7172 9750 1.671054 CAGTTTGGCCGATCACCGT 60.671 57.895 0.00 0.00 36.31 4.83
7174 9752 2.046285 CCCAGTTTGGCCGATCACC 61.046 63.158 0.00 0.00 35.79 4.02
7202 9784 6.749216 ATCATCACGACGTTGATAACATAC 57.251 37.500 10.51 0.00 34.29 2.39
7308 9892 1.148273 AGTGGTGCTTTGAGGCGAA 59.852 52.632 0.00 0.00 34.52 4.70
7309 9893 1.597854 CAGTGGTGCTTTGAGGCGA 60.598 57.895 0.00 0.00 34.52 5.54
7359 9943 3.447586 TCCTATGAGACTCCTTTGAACCG 59.552 47.826 0.00 0.00 0.00 4.44
7365 9949 6.642733 TCCAAAATCCTATGAGACTCCTTT 57.357 37.500 0.00 0.00 0.00 3.11
7371 9955 7.557719 TCAAATCCTTCCAAAATCCTATGAGAC 59.442 37.037 0.00 0.00 0.00 3.36
7373 9957 7.886629 TCAAATCCTTCCAAAATCCTATGAG 57.113 36.000 0.00 0.00 0.00 2.90
7425 10081 6.859715 GATTTCAATCCTGTGAATCAAACG 57.140 37.500 0.00 0.00 37.36 3.60
7460 10117 3.624777 AGTGCAAATGGACCCTATGAAG 58.375 45.455 1.14 0.00 37.04 3.02
7478 10137 9.143631 GATGAAATTTTCCTCCAAAATGTAGTG 57.856 33.333 6.68 0.00 42.86 2.74
7530 10275 5.652014 AGGATTATCAAAACGCAGGAATGAA 59.348 36.000 0.00 0.00 0.00 2.57
7532 10277 5.505173 AGGATTATCAAAACGCAGGAATG 57.495 39.130 0.00 0.00 0.00 2.67
7555 10300 2.419159 GGCCTCTTTAATCCGTAACCGT 60.419 50.000 0.00 0.00 0.00 4.83
7578 10323 0.604243 ACTTGCGCCCACATCGTTTA 60.604 50.000 4.18 0.00 0.00 2.01
7615 10360 4.445545 CGCTTCTTTCGCCCGCAC 62.446 66.667 0.00 0.00 0.00 5.34
7630 10375 4.451652 GTCGCAAGCCAGCTTCGC 62.452 66.667 0.90 8.96 33.42 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.