Multiple sequence alignment - TraesCS2D01G354800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2D01G354800
chr2D
100.000
3002
0
0
1
3002
455525869
455522868
0.000000e+00
5544.0
1
TraesCS2D01G354800
chr2D
95.833
72
3
0
2058
2129
455523437
455523366
1.890000e-22
117.0
2
TraesCS2D01G354800
chr2D
95.833
72
3
0
2433
2504
455523812
455523741
1.890000e-22
117.0
3
TraesCS2D01G354800
chr2B
92.679
1803
104
21
712
2505
536640556
536638773
0.000000e+00
2573.0
4
TraesCS2D01G354800
chr2B
90.365
685
52
7
34
711
536641265
536640588
0.000000e+00
887.0
5
TraesCS2D01G354800
chr2B
95.783
332
14
0
2671
3002
536638536
536638205
1.220000e-148
536.0
6
TraesCS2D01G354800
chr2B
85.385
260
20
11
2058
2309
536638844
536638595
1.380000e-63
254.0
7
TraesCS2D01G354800
chr2B
97.297
37
1
0
2589
2625
536638591
536638555
2.500000e-06
63.9
8
TraesCS2D01G354800
chr2A
92.773
1785
107
9
712
2479
595218306
595220085
0.000000e+00
2562.0
9
TraesCS2D01G354800
chr2A
92.867
715
40
9
2
711
595217566
595218274
0.000000e+00
1027.0
10
TraesCS2D01G354800
chr2A
93.111
450
24
1
2560
3002
595220109
595220558
0.000000e+00
652.0
11
TraesCS2D01G354800
chr2A
92.857
70
5
0
2435
2504
595219657
595219726
5.290000e-18
102.0
12
TraesCS2D01G354800
chr7D
85.915
71
10
0
1627
1697
511711688
511711618
3.210000e-10
76.8
13
TraesCS2D01G354800
chr7D
88.525
61
7
0
1623
1683
275818757
275818817
1.150000e-09
75.0
14
TraesCS2D01G354800
chr6D
89.062
64
3
2
1635
1694
434948828
434948891
3.210000e-10
76.8
15
TraesCS2D01G354800
chr4D
93.878
49
3
0
1628
1676
222397026
222397074
1.150000e-09
75.0
16
TraesCS2D01G354800
chr3D
92.308
52
4
0
1634
1685
235384940
235384889
1.150000e-09
75.0
17
TraesCS2D01G354800
chr4B
91.837
49
4
0
1628
1676
190685412
190685460
5.370000e-08
69.4
18
TraesCS2D01G354800
chr4B
94.444
36
2
0
1689
1724
634368905
634368940
4.180000e-04
56.5
19
TraesCS2D01G354800
chr3B
97.500
40
0
1
1637
1676
292263960
292263998
1.930000e-07
67.6
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2D01G354800
chr2D
455522868
455525869
3001
True
1926.00
5544
97.2220
1
3002
3
chr2D.!!$R1
3001
1
TraesCS2D01G354800
chr2B
536638205
536641265
3060
True
862.78
2573
92.3018
34
3002
5
chr2B.!!$R1
2968
2
TraesCS2D01G354800
chr2A
595217566
595220558
2992
False
1085.75
2562
92.9020
2
3002
4
chr2A.!!$F1
3000
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
227
235
0.955919
GGTGCTCTGTACAGCCCAAC
60.956
60.0
18.45
15.11
38.80
3.77
F
1021
1068
0.392595
GGCTCCCAAAGGTAACCTCG
60.393
60.0
0.00
0.00
30.89
4.63
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1787
1837
1.425066
ACCTTCTTGGCCTGAATGTCA
59.575
47.619
3.32
0.0
40.22
3.58
R
2522
2713
0.976641
TGTCTCATCGCCCAAAGACT
59.023
50.000
0.00
0.0
39.09
3.24
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
35
36
9.796120
TTTTGGTTGTTTATTGTAAGACAGAAG
57.204
29.630
0.00
0.00
0.00
2.85
36
37
8.740123
TTGGTTGTTTATTGTAAGACAGAAGA
57.260
30.769
0.00
0.00
0.00
2.87
37
38
8.149973
TGGTTGTTTATTGTAAGACAGAAGAC
57.850
34.615
0.00
0.00
0.00
3.01
38
39
7.771361
TGGTTGTTTATTGTAAGACAGAAGACA
59.229
33.333
0.00
0.00
0.00
3.41
39
40
8.283291
GGTTGTTTATTGTAAGACAGAAGACAG
58.717
37.037
0.00
0.00
0.00
3.51
113
114
9.036377
GCCGAATTTAATTTTCGCTTTAAAAAG
57.964
29.630
12.96
0.00
43.44
2.27
227
235
0.955919
GGTGCTCTGTACAGCCCAAC
60.956
60.000
18.45
15.11
38.80
3.77
293
305
2.513738
TCCACAATATAAAGGCCTGGCT
59.486
45.455
19.68
0.70
0.00
4.75
397
409
3.967024
ACCTCCCCATCCCACCCA
61.967
66.667
0.00
0.00
0.00
4.51
400
412
1.386485
CTCCCCATCCCACCCATCT
60.386
63.158
0.00
0.00
0.00
2.90
502
514
4.996434
GCCGGATCCGCTCCATGG
62.996
72.222
29.12
14.01
45.24
3.66
560
572
2.426522
GTTGTTCATGGCAGTAGCTGA
58.573
47.619
0.00
0.00
41.70
4.26
661
673
6.655078
AGGAGATGTTTATGTTTTGTTGCT
57.345
33.333
0.00
0.00
0.00
3.91
678
690
3.548745
TGCTCGAGATGATCATGGTTT
57.451
42.857
18.75
0.00
0.00
3.27
719
762
7.801547
AATTAGATGCTTGTTTTGACGAATG
57.198
32.000
0.00
0.00
0.00
2.67
737
780
4.377022
CGAATGGAGTTAGTGTTCCGTTTG
60.377
45.833
0.03
0.00
41.56
2.93
745
788
5.521372
AGTTAGTGTTCCGTTTGTAGTTGTC
59.479
40.000
0.00
0.00
0.00
3.18
761
805
4.897224
AGTTGTCGCATGTATTTTCATCG
58.103
39.130
0.00
0.00
0.00
3.84
918
965
9.066892
TGCTTTTCTAATGTCACTGTATTTTCT
57.933
29.630
0.00
0.00
0.00
2.52
936
983
9.590088
GTATTTTCTTGTAATCGTTTCTCGTTT
57.410
29.630
0.00
0.00
40.80
3.60
946
993
9.162793
GTAATCGTTTCTCGTTTAATCGATCTA
57.837
33.333
8.95
0.00
37.63
1.98
963
1010
5.296035
TCGATCTAAAATCACTGCTCGTCTA
59.704
40.000
0.00
0.00
0.00
2.59
984
1031
2.378038
TGTTTGCAGTTCAAGAGGCTT
58.622
42.857
0.00
0.00
35.84
4.35
986
1033
3.195396
TGTTTGCAGTTCAAGAGGCTTTT
59.805
39.130
0.00
0.00
35.84
2.27
1021
1068
0.392595
GGCTCCCAAAGGTAACCTCG
60.393
60.000
0.00
0.00
30.89
4.63
1031
1078
2.981898
AGGTAACCTCGTAATGTTGCC
58.018
47.619
0.00
0.00
44.59
4.52
1035
1082
2.172851
ACCTCGTAATGTTGCCGAAA
57.827
45.000
0.00
0.00
0.00
3.46
1048
1095
1.040339
GCCGAAATATGTGCCCCCAA
61.040
55.000
0.00
0.00
0.00
4.12
1074
1121
5.921004
TTGTTGTTGAAAATGCTAATGCC
57.079
34.783
0.00
0.00
38.71
4.40
1128
1175
8.629158
TCATGTGTAGTTCAAAGTTTGCTTTAT
58.371
29.630
10.90
0.00
42.54
1.40
1136
1183
8.850156
AGTTCAAAGTTTGCTTTATATGTCACT
58.150
29.630
10.90
0.00
42.54
3.41
1298
1345
3.181461
GGTGCTCCAATAGTATGCTCTGT
60.181
47.826
0.00
0.00
0.00
3.41
1317
1364
6.314896
GCTCTGTAAGTTTCAGTGATATGCTT
59.685
38.462
13.71
0.00
34.86
3.91
1450
1500
6.260936
AGTCCATTAGCTGATTATTGTTTCCG
59.739
38.462
0.00
0.00
0.00
4.30
1637
1687
1.997311
CAGGATCAGCACCCCTGGA
60.997
63.158
0.00
0.00
42.75
3.86
1733
1783
4.023291
ACAACAACACCCTTGTCTTCATT
58.977
39.130
0.00
0.00
33.55
2.57
1742
1792
2.996621
CCTTGTCTTCATTGTCGACCTC
59.003
50.000
14.12
0.00
0.00
3.85
1760
1810
2.494059
CTCAAGGCCGACAAGAAGAAA
58.506
47.619
0.00
0.00
0.00
2.52
1763
1813
4.647611
TCAAGGCCGACAAGAAGAAAATA
58.352
39.130
0.00
0.00
0.00
1.40
1787
1837
4.338879
AGGCTGCTGTCAAGAAAATGTAT
58.661
39.130
0.00
0.00
0.00
2.29
1877
1927
0.040603
GCTTGCTTGATCCGCTATGC
60.041
55.000
5.79
4.12
0.00
3.14
1878
1928
1.590932
CTTGCTTGATCCGCTATGCT
58.409
50.000
5.79
0.00
0.00
3.79
2003
2053
5.391310
CCAACAAGATCGGCATCATATAAGC
60.391
44.000
0.00
0.00
0.00
3.09
2085
2135
4.758165
TGTAGTTGTTACTTAGCAAAGGGC
59.242
41.667
0.00
0.00
38.14
5.19
2088
2138
3.518992
TGTTACTTAGCAAAGGGCCTT
57.481
42.857
14.48
14.48
46.50
4.35
2115
2165
1.977854
TCCATTGCCTACCATATCGCT
59.022
47.619
0.00
0.00
0.00
4.93
2226
2276
6.600882
TTCTTTACCATCCTTCGACTTACT
57.399
37.500
0.00
0.00
0.00
2.24
2227
2277
5.962433
TCTTTACCATCCTTCGACTTACTG
58.038
41.667
0.00
0.00
0.00
2.74
2257
2307
5.317733
TGTATAATTTCCCGGTTTTGCTG
57.682
39.130
0.00
0.00
0.00
4.41
2373
2436
7.776969
AGCAGATGTGGTATCTGAAATTACATT
59.223
33.333
18.27
0.00
46.25
2.71
2381
2444
8.190122
TGGTATCTGAAATTACATTGCATGTTC
58.810
33.333
7.02
1.15
41.63
3.18
2496
2559
1.810031
GCCTACCATATCGCTGCACAA
60.810
52.381
0.00
0.00
0.00
3.33
2505
2568
3.581024
ATCGCTGCACAATTTCATGTT
57.419
38.095
0.00
0.00
0.00
2.71
2506
2569
2.663808
TCGCTGCACAATTTCATGTTG
58.336
42.857
0.00
0.00
0.00
3.33
2521
2712
4.010349
TCATGTTGTGTGTGTTTGTGGTA
58.990
39.130
0.00
0.00
0.00
3.25
2522
2713
4.459337
TCATGTTGTGTGTGTTTGTGGTAA
59.541
37.500
0.00
0.00
0.00
2.85
2523
2714
4.427096
TGTTGTGTGTGTTTGTGGTAAG
57.573
40.909
0.00
0.00
0.00
2.34
2551
2746
0.109086
CGATGAGACAGAGTGCCGTT
60.109
55.000
0.00
0.00
0.00
4.44
2552
2747
1.670087
CGATGAGACAGAGTGCCGTTT
60.670
52.381
0.00
0.00
0.00
3.60
2553
2748
2.417719
GATGAGACAGAGTGCCGTTTT
58.582
47.619
0.00
0.00
0.00
2.43
2554
2749
1.581934
TGAGACAGAGTGCCGTTTTG
58.418
50.000
0.00
0.00
0.00
2.44
2555
2750
0.235926
GAGACAGAGTGCCGTTTTGC
59.764
55.000
0.00
0.00
0.00
3.68
2556
2751
1.082756
GACAGAGTGCCGTTTTGCG
60.083
57.895
0.00
0.00
40.95
4.85
2557
2752
1.495584
GACAGAGTGCCGTTTTGCGA
61.496
55.000
0.00
0.00
44.77
5.10
2558
2753
0.884704
ACAGAGTGCCGTTTTGCGAT
60.885
50.000
0.00
0.00
44.77
4.58
2559
2754
0.453282
CAGAGTGCCGTTTTGCGATG
60.453
55.000
0.00
0.00
44.77
3.84
2560
2755
0.884704
AGAGTGCCGTTTTGCGATGT
60.885
50.000
0.00
0.00
44.77
3.06
2561
2756
0.725784
GAGTGCCGTTTTGCGATGTG
60.726
55.000
0.00
0.00
44.77
3.21
2562
2757
1.163420
AGTGCCGTTTTGCGATGTGA
61.163
50.000
0.00
0.00
44.77
3.58
2563
2758
0.109781
GTGCCGTTTTGCGATGTGAT
60.110
50.000
0.00
0.00
44.77
3.06
2564
2759
0.109827
TGCCGTTTTGCGATGTGATG
60.110
50.000
0.00
0.00
44.77
3.07
2596
2791
5.163416
TGACATAAGCTTGCATCTGTAGCTA
60.163
40.000
9.86
0.00
44.05
3.32
2645
2840
7.879677
CAGGTTGATGATTAGGCTTACATATGA
59.120
37.037
10.38
0.00
0.00
2.15
2675
2870
1.065854
CCTACAAGGGTCAGCTGGAAG
60.066
57.143
15.13
1.06
0.00
3.46
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
46
47
7.094032
GCTCCTGCTGCCAAATATAATTTATCT
60.094
37.037
0.00
0.00
36.03
1.98
49
50
5.048782
CGCTCCTGCTGCCAAATATAATTTA
60.049
40.000
0.00
0.00
36.97
1.40
53
54
2.221169
CGCTCCTGCTGCCAAATATAA
58.779
47.619
0.00
0.00
36.97
0.98
57
58
2.196997
TACCGCTCCTGCTGCCAAAT
62.197
55.000
0.00
0.00
36.97
2.32
95
96
8.665685
TGTTTTGCCTTTTTAAAGCGAAAATTA
58.334
25.926
12.46
3.68
32.50
1.40
179
187
3.306166
CCTTGACGCCGATAAGTTAGTTG
59.694
47.826
0.00
0.00
0.00
3.16
277
289
1.878102
CGCGAGCCAGGCCTTTATATT
60.878
52.381
8.22
0.00
0.00
1.28
560
572
4.524328
GGGACAAATCACTGAGGAAAACAT
59.476
41.667
0.00
0.00
0.00
2.71
661
673
3.197549
TCCACAAACCATGATCATCTCGA
59.802
43.478
4.86
0.00
0.00
4.04
678
690
1.626686
ATTTCACGCCCAAATCCACA
58.373
45.000
0.00
0.00
0.00
4.17
719
762
4.625028
ACTACAAACGGAACACTAACTCC
58.375
43.478
0.00
0.00
0.00
3.85
737
780
5.896432
CGATGAAAATACATGCGACAACTAC
59.104
40.000
0.00
0.00
0.00
2.73
745
788
2.602933
CCCTGCGATGAAAATACATGCG
60.603
50.000
0.00
0.00
31.89
4.73
761
805
2.271800
CAGTATTTCGACAGACCCTGC
58.728
52.381
0.00
0.00
34.37
4.85
832
876
0.096108
GCTAAAGCAACTCAGAGCGC
59.904
55.000
0.00
0.00
41.59
5.92
877
922
1.877637
AAGCAAGCGATGTGTGTACA
58.122
45.000
0.00
0.00
41.89
2.90
879
924
3.138304
AGAAAAGCAAGCGATGTGTGTA
58.862
40.909
0.00
0.00
0.00
2.90
888
933
4.153986
CAGTGACATTAGAAAAGCAAGCG
58.846
43.478
0.00
0.00
0.00
4.68
918
965
7.565450
TCGATTAAACGAGAAACGATTACAA
57.435
32.000
3.45
0.00
45.77
2.41
920
967
8.047933
AGATCGATTAAACGAGAAACGATTAC
57.952
34.615
13.40
4.74
45.22
1.89
922
969
8.624701
TTAGATCGATTAAACGAGAAACGATT
57.375
30.769
13.40
0.00
45.22
3.34
936
983
6.504398
ACGAGCAGTGATTTTAGATCGATTA
58.496
36.000
0.00
0.00
41.85
1.75
937
984
5.352284
ACGAGCAGTGATTTTAGATCGATT
58.648
37.500
0.00
0.00
41.85
3.34
946
993
5.617751
GCAAACATAGACGAGCAGTGATTTT
60.618
40.000
0.00
0.00
0.00
1.82
963
1010
2.590821
AGCCTCTTGAACTGCAAACAT
58.409
42.857
0.00
0.00
35.74
2.71
984
1031
3.755378
GAGCCATTTGAGCTTCTCAGAAA
59.245
43.478
0.00
0.00
41.75
2.52
986
1033
2.355513
GGAGCCATTTGAGCTTCTCAGA
60.356
50.000
0.00
0.00
41.75
3.27
1021
1068
4.041723
GGCACATATTTCGGCAACATTAC
58.958
43.478
0.00
0.00
0.00
1.89
1031
1078
3.817709
AAATTGGGGGCACATATTTCG
57.182
42.857
0.00
0.00
0.00
3.46
1035
1082
4.042684
ACAACAAAAATTGGGGGCACATAT
59.957
37.500
0.00
0.00
33.63
1.78
1048
1095
7.861872
GGCATTAGCATTTTCAACAACAAAAAT
59.138
29.630
0.00
0.00
44.61
1.82
1074
1121
5.633830
AATCTAAAGCACCTGACATGTTG
57.366
39.130
0.00
0.00
0.00
3.33
1128
1175
5.480422
AGTGAGACCACAATACAGTGACATA
59.520
40.000
0.00
0.00
45.54
2.29
1136
1183
6.560003
ATCCAATAGTGAGACCACAATACA
57.440
37.500
0.00
0.00
45.54
2.29
1271
1318
3.565902
GCATACTATTGGAGCACCCTTTC
59.434
47.826
0.00
0.00
35.38
2.62
1298
1345
8.506437
CAAGTTGAAGCATATCACTGAAACTTA
58.494
33.333
0.00
0.00
34.42
2.24
1317
1364
4.887071
ACATGGCAAAGAGTAACAAGTTGA
59.113
37.500
10.54
0.00
0.00
3.18
1637
1687
6.043938
TCTGGTACTGGTCTAATTTGTTCCTT
59.956
38.462
0.00
0.00
0.00
3.36
1646
1696
5.144159
TGAGGATCTGGTACTGGTCTAAT
57.856
43.478
0.00
0.00
37.57
1.73
1742
1792
3.923017
ATTTTCTTCTTGTCGGCCTTG
57.077
42.857
0.00
0.00
0.00
3.61
1760
1810
5.789643
TTTTCTTGACAGCAGCCTTTATT
57.210
34.783
0.00
0.00
0.00
1.40
1763
1813
3.385755
ACATTTTCTTGACAGCAGCCTTT
59.614
39.130
0.00
0.00
0.00
3.11
1787
1837
1.425066
ACCTTCTTGGCCTGAATGTCA
59.575
47.619
3.32
0.00
40.22
3.58
1877
1927
1.532868
GTTGGTCACTTAGCTGCACAG
59.467
52.381
1.02
0.00
0.00
3.66
1878
1928
1.593196
GTTGGTCACTTAGCTGCACA
58.407
50.000
1.02
0.00
0.00
4.57
2003
2053
3.086600
GCAGGACCCTCCCTCTGG
61.087
72.222
0.00
0.00
37.19
3.86
2115
2165
4.687018
GCATCAAATTCATGAAAGTGTGCA
59.313
37.500
24.51
11.09
32.06
4.57
2226
2276
6.902408
ACCGGGAAATTATACAGGAAATACA
58.098
36.000
6.32
0.00
0.00
2.29
2227
2277
7.812690
AACCGGGAAATTATACAGGAAATAC
57.187
36.000
6.32
0.00
0.00
1.89
2257
2307
4.434713
AGACTTCAACAAACACACAACC
57.565
40.909
0.00
0.00
0.00
3.77
2373
2436
2.212812
TGCCTAACCATGAACATGCA
57.787
45.000
9.03
0.00
37.49
3.96
2481
2544
3.696281
TGAAATTGTGCAGCGATATGG
57.304
42.857
0.00
0.00
0.00
2.74
2496
2559
4.869297
CCACAAACACACACAACATGAAAT
59.131
37.500
0.00
0.00
0.00
2.17
2505
2568
3.945346
AGACTTACCACAAACACACACA
58.055
40.909
0.00
0.00
0.00
3.72
2506
2569
4.957759
AAGACTTACCACAAACACACAC
57.042
40.909
0.00
0.00
0.00
3.82
2521
2712
1.347707
TGTCTCATCGCCCAAAGACTT
59.652
47.619
0.00
0.00
39.09
3.01
2522
2713
0.976641
TGTCTCATCGCCCAAAGACT
59.023
50.000
0.00
0.00
39.09
3.24
2523
2714
1.066858
TCTGTCTCATCGCCCAAAGAC
60.067
52.381
0.00
0.00
38.86
3.01
2551
2746
4.023365
TCAATCACAACATCACATCGCAAA
60.023
37.500
0.00
0.00
0.00
3.68
2552
2747
3.501445
TCAATCACAACATCACATCGCAA
59.499
39.130
0.00
0.00
0.00
4.85
2553
2748
3.072944
TCAATCACAACATCACATCGCA
58.927
40.909
0.00
0.00
0.00
5.10
2554
2749
3.120234
TGTCAATCACAACATCACATCGC
60.120
43.478
0.00
0.00
29.30
4.58
2555
2750
4.666928
TGTCAATCACAACATCACATCG
57.333
40.909
0.00
0.00
29.30
3.84
2556
2751
6.690098
GCTTATGTCAATCACAACATCACATC
59.310
38.462
0.00
0.00
38.97
3.06
2557
2752
6.376299
AGCTTATGTCAATCACAACATCACAT
59.624
34.615
0.00
0.00
38.97
3.21
2558
2753
5.706833
AGCTTATGTCAATCACAACATCACA
59.293
36.000
0.00
0.00
38.97
3.58
2559
2754
6.187125
AGCTTATGTCAATCACAACATCAC
57.813
37.500
0.00
0.00
38.97
3.06
2560
2755
6.614160
CAAGCTTATGTCAATCACAACATCA
58.386
36.000
0.00
0.00
38.97
3.07
2561
2756
5.514204
GCAAGCTTATGTCAATCACAACATC
59.486
40.000
0.00
0.00
38.97
3.06
2562
2757
5.047872
TGCAAGCTTATGTCAATCACAACAT
60.048
36.000
0.00
0.00
38.97
2.71
2563
2758
4.277921
TGCAAGCTTATGTCAATCACAACA
59.722
37.500
0.00
0.00
38.97
3.33
2564
2759
4.797471
TGCAAGCTTATGTCAATCACAAC
58.203
39.130
0.00
0.00
38.97
3.32
2596
2791
6.711277
TGATAGTTTCAGATACCACAGCTTT
58.289
36.000
0.00
0.00
0.00
3.51
2645
2840
5.803470
GCTGACCCTTGTAGGATTAACTGTT
60.803
44.000
0.00
0.00
37.67
3.16
2675
2870
9.934190
TTCTTAGTTTTATTTGGACGTGTAAAC
57.066
29.630
0.00
0.00
0.00
2.01
2786
2988
1.663643
GCGCAAATCTTCCGTCACATA
59.336
47.619
0.30
0.00
0.00
2.29
2839
3041
2.818169
TTGCCGTGGTCTGGAAGCT
61.818
57.895
0.00
0.00
0.00
3.74
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.