Multiple sequence alignment - TraesCS2D01G354800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G354800 chr2D 100.000 3002 0 0 1 3002 455525869 455522868 0.000000e+00 5544.0
1 TraesCS2D01G354800 chr2D 95.833 72 3 0 2058 2129 455523437 455523366 1.890000e-22 117.0
2 TraesCS2D01G354800 chr2D 95.833 72 3 0 2433 2504 455523812 455523741 1.890000e-22 117.0
3 TraesCS2D01G354800 chr2B 92.679 1803 104 21 712 2505 536640556 536638773 0.000000e+00 2573.0
4 TraesCS2D01G354800 chr2B 90.365 685 52 7 34 711 536641265 536640588 0.000000e+00 887.0
5 TraesCS2D01G354800 chr2B 95.783 332 14 0 2671 3002 536638536 536638205 1.220000e-148 536.0
6 TraesCS2D01G354800 chr2B 85.385 260 20 11 2058 2309 536638844 536638595 1.380000e-63 254.0
7 TraesCS2D01G354800 chr2B 97.297 37 1 0 2589 2625 536638591 536638555 2.500000e-06 63.9
8 TraesCS2D01G354800 chr2A 92.773 1785 107 9 712 2479 595218306 595220085 0.000000e+00 2562.0
9 TraesCS2D01G354800 chr2A 92.867 715 40 9 2 711 595217566 595218274 0.000000e+00 1027.0
10 TraesCS2D01G354800 chr2A 93.111 450 24 1 2560 3002 595220109 595220558 0.000000e+00 652.0
11 TraesCS2D01G354800 chr2A 92.857 70 5 0 2435 2504 595219657 595219726 5.290000e-18 102.0
12 TraesCS2D01G354800 chr7D 85.915 71 10 0 1627 1697 511711688 511711618 3.210000e-10 76.8
13 TraesCS2D01G354800 chr7D 88.525 61 7 0 1623 1683 275818757 275818817 1.150000e-09 75.0
14 TraesCS2D01G354800 chr6D 89.062 64 3 2 1635 1694 434948828 434948891 3.210000e-10 76.8
15 TraesCS2D01G354800 chr4D 93.878 49 3 0 1628 1676 222397026 222397074 1.150000e-09 75.0
16 TraesCS2D01G354800 chr3D 92.308 52 4 0 1634 1685 235384940 235384889 1.150000e-09 75.0
17 TraesCS2D01G354800 chr4B 91.837 49 4 0 1628 1676 190685412 190685460 5.370000e-08 69.4
18 TraesCS2D01G354800 chr4B 94.444 36 2 0 1689 1724 634368905 634368940 4.180000e-04 56.5
19 TraesCS2D01G354800 chr3B 97.500 40 0 1 1637 1676 292263960 292263998 1.930000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G354800 chr2D 455522868 455525869 3001 True 1926.00 5544 97.2220 1 3002 3 chr2D.!!$R1 3001
1 TraesCS2D01G354800 chr2B 536638205 536641265 3060 True 862.78 2573 92.3018 34 3002 5 chr2B.!!$R1 2968
2 TraesCS2D01G354800 chr2A 595217566 595220558 2992 False 1085.75 2562 92.9020 2 3002 4 chr2A.!!$F1 3000


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 235 0.955919 GGTGCTCTGTACAGCCCAAC 60.956 60.0 18.45 15.11 38.80 3.77 F
1021 1068 0.392595 GGCTCCCAAAGGTAACCTCG 60.393 60.0 0.00 0.00 30.89 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 1837 1.425066 ACCTTCTTGGCCTGAATGTCA 59.575 47.619 3.32 0.0 40.22 3.58 R
2522 2713 0.976641 TGTCTCATCGCCCAAAGACT 59.023 50.000 0.00 0.0 39.09 3.24 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.796120 TTTTGGTTGTTTATTGTAAGACAGAAG 57.204 29.630 0.00 0.00 0.00 2.85
36 37 8.740123 TTGGTTGTTTATTGTAAGACAGAAGA 57.260 30.769 0.00 0.00 0.00 2.87
37 38 8.149973 TGGTTGTTTATTGTAAGACAGAAGAC 57.850 34.615 0.00 0.00 0.00 3.01
38 39 7.771361 TGGTTGTTTATTGTAAGACAGAAGACA 59.229 33.333 0.00 0.00 0.00 3.41
39 40 8.283291 GGTTGTTTATTGTAAGACAGAAGACAG 58.717 37.037 0.00 0.00 0.00 3.51
113 114 9.036377 GCCGAATTTAATTTTCGCTTTAAAAAG 57.964 29.630 12.96 0.00 43.44 2.27
227 235 0.955919 GGTGCTCTGTACAGCCCAAC 60.956 60.000 18.45 15.11 38.80 3.77
293 305 2.513738 TCCACAATATAAAGGCCTGGCT 59.486 45.455 19.68 0.70 0.00 4.75
397 409 3.967024 ACCTCCCCATCCCACCCA 61.967 66.667 0.00 0.00 0.00 4.51
400 412 1.386485 CTCCCCATCCCACCCATCT 60.386 63.158 0.00 0.00 0.00 2.90
502 514 4.996434 GCCGGATCCGCTCCATGG 62.996 72.222 29.12 14.01 45.24 3.66
560 572 2.426522 GTTGTTCATGGCAGTAGCTGA 58.573 47.619 0.00 0.00 41.70 4.26
661 673 6.655078 AGGAGATGTTTATGTTTTGTTGCT 57.345 33.333 0.00 0.00 0.00 3.91
678 690 3.548745 TGCTCGAGATGATCATGGTTT 57.451 42.857 18.75 0.00 0.00 3.27
719 762 7.801547 AATTAGATGCTTGTTTTGACGAATG 57.198 32.000 0.00 0.00 0.00 2.67
737 780 4.377022 CGAATGGAGTTAGTGTTCCGTTTG 60.377 45.833 0.03 0.00 41.56 2.93
745 788 5.521372 AGTTAGTGTTCCGTTTGTAGTTGTC 59.479 40.000 0.00 0.00 0.00 3.18
761 805 4.897224 AGTTGTCGCATGTATTTTCATCG 58.103 39.130 0.00 0.00 0.00 3.84
918 965 9.066892 TGCTTTTCTAATGTCACTGTATTTTCT 57.933 29.630 0.00 0.00 0.00 2.52
936 983 9.590088 GTATTTTCTTGTAATCGTTTCTCGTTT 57.410 29.630 0.00 0.00 40.80 3.60
946 993 9.162793 GTAATCGTTTCTCGTTTAATCGATCTA 57.837 33.333 8.95 0.00 37.63 1.98
963 1010 5.296035 TCGATCTAAAATCACTGCTCGTCTA 59.704 40.000 0.00 0.00 0.00 2.59
984 1031 2.378038 TGTTTGCAGTTCAAGAGGCTT 58.622 42.857 0.00 0.00 35.84 4.35
986 1033 3.195396 TGTTTGCAGTTCAAGAGGCTTTT 59.805 39.130 0.00 0.00 35.84 2.27
1021 1068 0.392595 GGCTCCCAAAGGTAACCTCG 60.393 60.000 0.00 0.00 30.89 4.63
1031 1078 2.981898 AGGTAACCTCGTAATGTTGCC 58.018 47.619 0.00 0.00 44.59 4.52
1035 1082 2.172851 ACCTCGTAATGTTGCCGAAA 57.827 45.000 0.00 0.00 0.00 3.46
1048 1095 1.040339 GCCGAAATATGTGCCCCCAA 61.040 55.000 0.00 0.00 0.00 4.12
1074 1121 5.921004 TTGTTGTTGAAAATGCTAATGCC 57.079 34.783 0.00 0.00 38.71 4.40
1128 1175 8.629158 TCATGTGTAGTTCAAAGTTTGCTTTAT 58.371 29.630 10.90 0.00 42.54 1.40
1136 1183 8.850156 AGTTCAAAGTTTGCTTTATATGTCACT 58.150 29.630 10.90 0.00 42.54 3.41
1298 1345 3.181461 GGTGCTCCAATAGTATGCTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
1317 1364 6.314896 GCTCTGTAAGTTTCAGTGATATGCTT 59.685 38.462 13.71 0.00 34.86 3.91
1450 1500 6.260936 AGTCCATTAGCTGATTATTGTTTCCG 59.739 38.462 0.00 0.00 0.00 4.30
1637 1687 1.997311 CAGGATCAGCACCCCTGGA 60.997 63.158 0.00 0.00 42.75 3.86
1733 1783 4.023291 ACAACAACACCCTTGTCTTCATT 58.977 39.130 0.00 0.00 33.55 2.57
1742 1792 2.996621 CCTTGTCTTCATTGTCGACCTC 59.003 50.000 14.12 0.00 0.00 3.85
1760 1810 2.494059 CTCAAGGCCGACAAGAAGAAA 58.506 47.619 0.00 0.00 0.00 2.52
1763 1813 4.647611 TCAAGGCCGACAAGAAGAAAATA 58.352 39.130 0.00 0.00 0.00 1.40
1787 1837 4.338879 AGGCTGCTGTCAAGAAAATGTAT 58.661 39.130 0.00 0.00 0.00 2.29
1877 1927 0.040603 GCTTGCTTGATCCGCTATGC 60.041 55.000 5.79 4.12 0.00 3.14
1878 1928 1.590932 CTTGCTTGATCCGCTATGCT 58.409 50.000 5.79 0.00 0.00 3.79
2003 2053 5.391310 CCAACAAGATCGGCATCATATAAGC 60.391 44.000 0.00 0.00 0.00 3.09
2085 2135 4.758165 TGTAGTTGTTACTTAGCAAAGGGC 59.242 41.667 0.00 0.00 38.14 5.19
2088 2138 3.518992 TGTTACTTAGCAAAGGGCCTT 57.481 42.857 14.48 14.48 46.50 4.35
2115 2165 1.977854 TCCATTGCCTACCATATCGCT 59.022 47.619 0.00 0.00 0.00 4.93
2226 2276 6.600882 TTCTTTACCATCCTTCGACTTACT 57.399 37.500 0.00 0.00 0.00 2.24
2227 2277 5.962433 TCTTTACCATCCTTCGACTTACTG 58.038 41.667 0.00 0.00 0.00 2.74
2257 2307 5.317733 TGTATAATTTCCCGGTTTTGCTG 57.682 39.130 0.00 0.00 0.00 4.41
2373 2436 7.776969 AGCAGATGTGGTATCTGAAATTACATT 59.223 33.333 18.27 0.00 46.25 2.71
2381 2444 8.190122 TGGTATCTGAAATTACATTGCATGTTC 58.810 33.333 7.02 1.15 41.63 3.18
2496 2559 1.810031 GCCTACCATATCGCTGCACAA 60.810 52.381 0.00 0.00 0.00 3.33
2505 2568 3.581024 ATCGCTGCACAATTTCATGTT 57.419 38.095 0.00 0.00 0.00 2.71
2506 2569 2.663808 TCGCTGCACAATTTCATGTTG 58.336 42.857 0.00 0.00 0.00 3.33
2521 2712 4.010349 TCATGTTGTGTGTGTTTGTGGTA 58.990 39.130 0.00 0.00 0.00 3.25
2522 2713 4.459337 TCATGTTGTGTGTGTTTGTGGTAA 59.541 37.500 0.00 0.00 0.00 2.85
2523 2714 4.427096 TGTTGTGTGTGTTTGTGGTAAG 57.573 40.909 0.00 0.00 0.00 2.34
2551 2746 0.109086 CGATGAGACAGAGTGCCGTT 60.109 55.000 0.00 0.00 0.00 4.44
2552 2747 1.670087 CGATGAGACAGAGTGCCGTTT 60.670 52.381 0.00 0.00 0.00 3.60
2553 2748 2.417719 GATGAGACAGAGTGCCGTTTT 58.582 47.619 0.00 0.00 0.00 2.43
2554 2749 1.581934 TGAGACAGAGTGCCGTTTTG 58.418 50.000 0.00 0.00 0.00 2.44
2555 2750 0.235926 GAGACAGAGTGCCGTTTTGC 59.764 55.000 0.00 0.00 0.00 3.68
2556 2751 1.082756 GACAGAGTGCCGTTTTGCG 60.083 57.895 0.00 0.00 40.95 4.85
2557 2752 1.495584 GACAGAGTGCCGTTTTGCGA 61.496 55.000 0.00 0.00 44.77 5.10
2558 2753 0.884704 ACAGAGTGCCGTTTTGCGAT 60.885 50.000 0.00 0.00 44.77 4.58
2559 2754 0.453282 CAGAGTGCCGTTTTGCGATG 60.453 55.000 0.00 0.00 44.77 3.84
2560 2755 0.884704 AGAGTGCCGTTTTGCGATGT 60.885 50.000 0.00 0.00 44.77 3.06
2561 2756 0.725784 GAGTGCCGTTTTGCGATGTG 60.726 55.000 0.00 0.00 44.77 3.21
2562 2757 1.163420 AGTGCCGTTTTGCGATGTGA 61.163 50.000 0.00 0.00 44.77 3.58
2563 2758 0.109781 GTGCCGTTTTGCGATGTGAT 60.110 50.000 0.00 0.00 44.77 3.06
2564 2759 0.109827 TGCCGTTTTGCGATGTGATG 60.110 50.000 0.00 0.00 44.77 3.07
2596 2791 5.163416 TGACATAAGCTTGCATCTGTAGCTA 60.163 40.000 9.86 0.00 44.05 3.32
2645 2840 7.879677 CAGGTTGATGATTAGGCTTACATATGA 59.120 37.037 10.38 0.00 0.00 2.15
2675 2870 1.065854 CCTACAAGGGTCAGCTGGAAG 60.066 57.143 15.13 1.06 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.094032 GCTCCTGCTGCCAAATATAATTTATCT 60.094 37.037 0.00 0.00 36.03 1.98
49 50 5.048782 CGCTCCTGCTGCCAAATATAATTTA 60.049 40.000 0.00 0.00 36.97 1.40
53 54 2.221169 CGCTCCTGCTGCCAAATATAA 58.779 47.619 0.00 0.00 36.97 0.98
57 58 2.196997 TACCGCTCCTGCTGCCAAAT 62.197 55.000 0.00 0.00 36.97 2.32
95 96 8.665685 TGTTTTGCCTTTTTAAAGCGAAAATTA 58.334 25.926 12.46 3.68 32.50 1.40
179 187 3.306166 CCTTGACGCCGATAAGTTAGTTG 59.694 47.826 0.00 0.00 0.00 3.16
277 289 1.878102 CGCGAGCCAGGCCTTTATATT 60.878 52.381 8.22 0.00 0.00 1.28
560 572 4.524328 GGGACAAATCACTGAGGAAAACAT 59.476 41.667 0.00 0.00 0.00 2.71
661 673 3.197549 TCCACAAACCATGATCATCTCGA 59.802 43.478 4.86 0.00 0.00 4.04
678 690 1.626686 ATTTCACGCCCAAATCCACA 58.373 45.000 0.00 0.00 0.00 4.17
719 762 4.625028 ACTACAAACGGAACACTAACTCC 58.375 43.478 0.00 0.00 0.00 3.85
737 780 5.896432 CGATGAAAATACATGCGACAACTAC 59.104 40.000 0.00 0.00 0.00 2.73
745 788 2.602933 CCCTGCGATGAAAATACATGCG 60.603 50.000 0.00 0.00 31.89 4.73
761 805 2.271800 CAGTATTTCGACAGACCCTGC 58.728 52.381 0.00 0.00 34.37 4.85
832 876 0.096108 GCTAAAGCAACTCAGAGCGC 59.904 55.000 0.00 0.00 41.59 5.92
877 922 1.877637 AAGCAAGCGATGTGTGTACA 58.122 45.000 0.00 0.00 41.89 2.90
879 924 3.138304 AGAAAAGCAAGCGATGTGTGTA 58.862 40.909 0.00 0.00 0.00 2.90
888 933 4.153986 CAGTGACATTAGAAAAGCAAGCG 58.846 43.478 0.00 0.00 0.00 4.68
918 965 7.565450 TCGATTAAACGAGAAACGATTACAA 57.435 32.000 3.45 0.00 45.77 2.41
920 967 8.047933 AGATCGATTAAACGAGAAACGATTAC 57.952 34.615 13.40 4.74 45.22 1.89
922 969 8.624701 TTAGATCGATTAAACGAGAAACGATT 57.375 30.769 13.40 0.00 45.22 3.34
936 983 6.504398 ACGAGCAGTGATTTTAGATCGATTA 58.496 36.000 0.00 0.00 41.85 1.75
937 984 5.352284 ACGAGCAGTGATTTTAGATCGATT 58.648 37.500 0.00 0.00 41.85 3.34
946 993 5.617751 GCAAACATAGACGAGCAGTGATTTT 60.618 40.000 0.00 0.00 0.00 1.82
963 1010 2.590821 AGCCTCTTGAACTGCAAACAT 58.409 42.857 0.00 0.00 35.74 2.71
984 1031 3.755378 GAGCCATTTGAGCTTCTCAGAAA 59.245 43.478 0.00 0.00 41.75 2.52
986 1033 2.355513 GGAGCCATTTGAGCTTCTCAGA 60.356 50.000 0.00 0.00 41.75 3.27
1021 1068 4.041723 GGCACATATTTCGGCAACATTAC 58.958 43.478 0.00 0.00 0.00 1.89
1031 1078 3.817709 AAATTGGGGGCACATATTTCG 57.182 42.857 0.00 0.00 0.00 3.46
1035 1082 4.042684 ACAACAAAAATTGGGGGCACATAT 59.957 37.500 0.00 0.00 33.63 1.78
1048 1095 7.861872 GGCATTAGCATTTTCAACAACAAAAAT 59.138 29.630 0.00 0.00 44.61 1.82
1074 1121 5.633830 AATCTAAAGCACCTGACATGTTG 57.366 39.130 0.00 0.00 0.00 3.33
1128 1175 5.480422 AGTGAGACCACAATACAGTGACATA 59.520 40.000 0.00 0.00 45.54 2.29
1136 1183 6.560003 ATCCAATAGTGAGACCACAATACA 57.440 37.500 0.00 0.00 45.54 2.29
1271 1318 3.565902 GCATACTATTGGAGCACCCTTTC 59.434 47.826 0.00 0.00 35.38 2.62
1298 1345 8.506437 CAAGTTGAAGCATATCACTGAAACTTA 58.494 33.333 0.00 0.00 34.42 2.24
1317 1364 4.887071 ACATGGCAAAGAGTAACAAGTTGA 59.113 37.500 10.54 0.00 0.00 3.18
1637 1687 6.043938 TCTGGTACTGGTCTAATTTGTTCCTT 59.956 38.462 0.00 0.00 0.00 3.36
1646 1696 5.144159 TGAGGATCTGGTACTGGTCTAAT 57.856 43.478 0.00 0.00 37.57 1.73
1742 1792 3.923017 ATTTTCTTCTTGTCGGCCTTG 57.077 42.857 0.00 0.00 0.00 3.61
1760 1810 5.789643 TTTTCTTGACAGCAGCCTTTATT 57.210 34.783 0.00 0.00 0.00 1.40
1763 1813 3.385755 ACATTTTCTTGACAGCAGCCTTT 59.614 39.130 0.00 0.00 0.00 3.11
1787 1837 1.425066 ACCTTCTTGGCCTGAATGTCA 59.575 47.619 3.32 0.00 40.22 3.58
1877 1927 1.532868 GTTGGTCACTTAGCTGCACAG 59.467 52.381 1.02 0.00 0.00 3.66
1878 1928 1.593196 GTTGGTCACTTAGCTGCACA 58.407 50.000 1.02 0.00 0.00 4.57
2003 2053 3.086600 GCAGGACCCTCCCTCTGG 61.087 72.222 0.00 0.00 37.19 3.86
2115 2165 4.687018 GCATCAAATTCATGAAAGTGTGCA 59.313 37.500 24.51 11.09 32.06 4.57
2226 2276 6.902408 ACCGGGAAATTATACAGGAAATACA 58.098 36.000 6.32 0.00 0.00 2.29
2227 2277 7.812690 AACCGGGAAATTATACAGGAAATAC 57.187 36.000 6.32 0.00 0.00 1.89
2257 2307 4.434713 AGACTTCAACAAACACACAACC 57.565 40.909 0.00 0.00 0.00 3.77
2373 2436 2.212812 TGCCTAACCATGAACATGCA 57.787 45.000 9.03 0.00 37.49 3.96
2481 2544 3.696281 TGAAATTGTGCAGCGATATGG 57.304 42.857 0.00 0.00 0.00 2.74
2496 2559 4.869297 CCACAAACACACACAACATGAAAT 59.131 37.500 0.00 0.00 0.00 2.17
2505 2568 3.945346 AGACTTACCACAAACACACACA 58.055 40.909 0.00 0.00 0.00 3.72
2506 2569 4.957759 AAGACTTACCACAAACACACAC 57.042 40.909 0.00 0.00 0.00 3.82
2521 2712 1.347707 TGTCTCATCGCCCAAAGACTT 59.652 47.619 0.00 0.00 39.09 3.01
2522 2713 0.976641 TGTCTCATCGCCCAAAGACT 59.023 50.000 0.00 0.00 39.09 3.24
2523 2714 1.066858 TCTGTCTCATCGCCCAAAGAC 60.067 52.381 0.00 0.00 38.86 3.01
2551 2746 4.023365 TCAATCACAACATCACATCGCAAA 60.023 37.500 0.00 0.00 0.00 3.68
2552 2747 3.501445 TCAATCACAACATCACATCGCAA 59.499 39.130 0.00 0.00 0.00 4.85
2553 2748 3.072944 TCAATCACAACATCACATCGCA 58.927 40.909 0.00 0.00 0.00 5.10
2554 2749 3.120234 TGTCAATCACAACATCACATCGC 60.120 43.478 0.00 0.00 29.30 4.58
2555 2750 4.666928 TGTCAATCACAACATCACATCG 57.333 40.909 0.00 0.00 29.30 3.84
2556 2751 6.690098 GCTTATGTCAATCACAACATCACATC 59.310 38.462 0.00 0.00 38.97 3.06
2557 2752 6.376299 AGCTTATGTCAATCACAACATCACAT 59.624 34.615 0.00 0.00 38.97 3.21
2558 2753 5.706833 AGCTTATGTCAATCACAACATCACA 59.293 36.000 0.00 0.00 38.97 3.58
2559 2754 6.187125 AGCTTATGTCAATCACAACATCAC 57.813 37.500 0.00 0.00 38.97 3.06
2560 2755 6.614160 CAAGCTTATGTCAATCACAACATCA 58.386 36.000 0.00 0.00 38.97 3.07
2561 2756 5.514204 GCAAGCTTATGTCAATCACAACATC 59.486 40.000 0.00 0.00 38.97 3.06
2562 2757 5.047872 TGCAAGCTTATGTCAATCACAACAT 60.048 36.000 0.00 0.00 38.97 2.71
2563 2758 4.277921 TGCAAGCTTATGTCAATCACAACA 59.722 37.500 0.00 0.00 38.97 3.33
2564 2759 4.797471 TGCAAGCTTATGTCAATCACAAC 58.203 39.130 0.00 0.00 38.97 3.32
2596 2791 6.711277 TGATAGTTTCAGATACCACAGCTTT 58.289 36.000 0.00 0.00 0.00 3.51
2645 2840 5.803470 GCTGACCCTTGTAGGATTAACTGTT 60.803 44.000 0.00 0.00 37.67 3.16
2675 2870 9.934190 TTCTTAGTTTTATTTGGACGTGTAAAC 57.066 29.630 0.00 0.00 0.00 2.01
2786 2988 1.663643 GCGCAAATCTTCCGTCACATA 59.336 47.619 0.30 0.00 0.00 2.29
2839 3041 2.818169 TTGCCGTGGTCTGGAAGCT 61.818 57.895 0.00 0.00 0.00 3.74



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.