Multiple sequence alignment - TraesCS2D01G354600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G354600 chr2D 100.000 4666 0 0 1 4666 455513539 455518204 0.000000e+00 8617.0
1 TraesCS2D01G354600 chr2B 92.369 3984 178 46 6 3910 536615565 536619501 0.000000e+00 5557.0
2 TraesCS2D01G354600 chr2B 86.321 753 71 17 3924 4666 536619581 536620311 0.000000e+00 791.0
3 TraesCS2D01G354600 chr2A 92.040 3128 154 35 148 3219 595231054 595227966 0.000000e+00 4309.0
4 TraesCS2D01G354600 chr2A 90.671 686 47 10 3996 4666 595226965 595226282 0.000000e+00 896.0
5 TraesCS2D01G354600 chr2A 96.118 541 18 2 3212 3749 595227893 595227353 0.000000e+00 880.0
6 TraesCS2D01G354600 chr2A 95.041 121 4 2 3797 3916 595227340 595227221 6.160000e-44 189.0
7 TraesCS2D01G354600 chr2A 96.875 64 1 1 89 151 595232859 595232796 6.390000e-19 106.0
8 TraesCS2D01G354600 chr2A 94.737 57 3 0 3924 3980 595227132 595227076 6.430000e-14 89.8
9 TraesCS2D01G354600 chr4D 85.507 69 10 0 1302 1370 323118501 323118433 6.480000e-09 73.1
10 TraesCS2D01G354600 chr4B 85.507 69 10 0 1302 1370 403274758 403274690 6.480000e-09 73.1
11 TraesCS2D01G354600 chr4A 85.507 69 10 0 1302 1370 149028112 149028180 6.480000e-09 73.1
12 TraesCS2D01G354600 chr6B 89.286 56 5 1 1316 1370 30354954 30355009 8.380000e-08 69.4
13 TraesCS2D01G354600 chr6B 86.207 58 8 0 1313 1370 30490891 30490948 3.900000e-06 63.9
14 TraesCS2D01G354600 chr6B 95.000 40 2 0 2089 2128 72153983 72154022 3.900000e-06 63.9
15 TraesCS2D01G354600 chr5B 95.000 40 2 0 2089 2128 352218852 352218891 3.900000e-06 63.9
16 TraesCS2D01G354600 chr3B 95.000 40 2 0 2089 2128 512039392 512039431 3.900000e-06 63.9
17 TraesCS2D01G354600 chr3A 95.000 40 2 0 2089 2128 191042008 191041969 3.900000e-06 63.9
18 TraesCS2D01G354600 chr7D 94.872 39 2 0 1332 1370 614679912 614679874 1.400000e-05 62.1
19 TraesCS2D01G354600 chr7D 97.222 36 1 0 1335 1370 614928557 614928592 1.400000e-05 62.1
20 TraesCS2D01G354600 chr7A 92.500 40 3 0 2089 2128 655765291 655765330 1.810000e-04 58.4
21 TraesCS2D01G354600 chr7A 94.444 36 2 0 2089 2124 498450900 498450865 6.520000e-04 56.5
22 TraesCS2D01G354600 chr1B 92.105 38 3 0 2091 2128 144661000 144661037 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G354600 chr2D 455513539 455518204 4665 False 8617.0 8617 100.000 1 4666 1 chr2D.!!$F1 4665
1 TraesCS2D01G354600 chr2B 536615565 536620311 4746 False 3174.0 5557 89.345 6 4666 2 chr2B.!!$F1 4660
2 TraesCS2D01G354600 chr2A 595226282 595232859 6577 True 1078.3 4309 94.247 89 4666 6 chr2A.!!$R1 4577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 1.199327 ACATACACACAGACGACCTCG 59.801 52.381 0.00 0.0 46.33 4.63 F
1216 2994 1.180029 GTGCCAACATGGAAGATGCT 58.820 50.000 0.00 0.0 40.96 3.79 F
2181 3978 0.907704 TGTCTGGCTGGTACCCGATT 60.908 55.000 10.07 0.0 0.00 3.34 F
3022 4862 1.069049 CTGGGCAGTTGGTTGGAAAAG 59.931 52.381 0.00 0.0 0.00 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 3523 0.179225 CGTACGCATGTGTGAAAGGC 60.179 55.0 22.00 4.42 0.00 4.35 R
2996 4836 0.032615 AACCAACTGCCCAGGTCAAA 60.033 50.0 0.00 0.00 33.74 2.69 R
3091 4935 0.888736 CCAACGACATGCAGGGTGAA 60.889 55.0 2.31 0.00 0.00 3.18 R
4370 6493 0.108615 GCTGCTGTGTGTATCGTCCT 60.109 55.0 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 9.244292 AGAGACTAAAATCTACATACACACAGA 57.756 33.333 0.00 0.00 0.00 3.41
76 77 9.291664 GAGACTAAAATCTACATACACACAGAC 57.708 37.037 0.00 0.00 0.00 3.51
77 78 7.968956 AGACTAAAATCTACATACACACAGACG 59.031 37.037 0.00 0.00 0.00 4.18
78 79 7.823665 ACTAAAATCTACATACACACAGACGA 58.176 34.615 0.00 0.00 0.00 4.20
79 80 6.946229 AAAATCTACATACACACAGACGAC 57.054 37.500 0.00 0.00 0.00 4.34
80 81 4.634184 ATCTACATACACACAGACGACC 57.366 45.455 0.00 0.00 0.00 4.79
81 82 3.682696 TCTACATACACACAGACGACCT 58.317 45.455 0.00 0.00 0.00 3.85
82 83 3.688185 TCTACATACACACAGACGACCTC 59.312 47.826 0.00 0.00 0.00 3.85
83 84 1.199327 ACATACACACAGACGACCTCG 59.801 52.381 0.00 0.00 46.33 4.63
84 85 1.467342 CATACACACAGACGACCTCGA 59.533 52.381 0.78 0.00 43.02 4.04
98 99 2.831284 TCGATCATCGGCGGTGGA 60.831 61.111 21.45 6.92 40.88 4.02
956 2728 4.582656 TGGTGATGTCTCGTTTGGATTTTT 59.417 37.500 0.00 0.00 0.00 1.94
969 2741 9.050601 TCGTTTGGATTTTTATTCATTGCTTTT 57.949 25.926 0.00 0.00 0.00 2.27
1141 2919 1.961277 GGTGCTGTCCAAGACCACG 60.961 63.158 0.00 0.00 29.71 4.94
1174 2952 2.005960 ATGACAGGCTCGAGTACGCC 62.006 60.000 15.13 9.97 46.65 5.68
1216 2994 1.180029 GTGCCAACATGGAAGATGCT 58.820 50.000 0.00 0.00 40.96 3.79
1223 3001 2.983229 ACATGGAAGATGCTGTGAGTC 58.017 47.619 0.00 0.00 0.00 3.36
1236 3014 4.655649 TGCTGTGAGTCACCATCCTAATAT 59.344 41.667 20.43 0.00 32.73 1.28
1239 3017 7.016563 TGCTGTGAGTCACCATCCTAATATTAT 59.983 37.037 20.43 0.00 32.73 1.28
1264 3042 3.738791 GGTTTAACTTTGGTGAAATGCCG 59.261 43.478 0.00 0.00 29.48 5.69
1266 3044 4.920640 TTAACTTTGGTGAAATGCCGAA 57.079 36.364 0.00 0.00 0.00 4.30
1431 3209 8.557864 GCAGAATTCAGATATATGCATGATACC 58.442 37.037 10.16 0.00 32.58 2.73
1464 3242 7.285401 GCTCCTGGAATTCACATAAATCCTTTA 59.715 37.037 7.93 0.00 0.00 1.85
1592 3386 4.422073 TCCACACTTCAATGACAGTCTT 57.578 40.909 1.31 0.00 0.00 3.01
1701 3495 1.369091 CCCGGAGTTTTCTGCCGATG 61.369 60.000 0.73 0.00 40.42 3.84
1729 3523 6.640499 ACGATATTGTTTTGTTCATTGTGGTG 59.360 34.615 0.00 0.00 0.00 4.17
1852 3646 6.381420 GGAATTATCTGAGTATAGCCCTGCTA 59.619 42.308 0.00 0.00 45.55 3.49
1853 3647 7.093289 GGAATTATCTGAGTATAGCCCTGCTAA 60.093 40.741 0.00 0.00 44.62 3.09
1868 3662 7.128077 AGCCCTGCTAATAATAATGCCAATAT 58.872 34.615 0.00 0.00 36.99 1.28
1924 3718 5.095490 GTGCTTGTGTAAATATGAAGGTGC 58.905 41.667 0.00 0.00 0.00 5.01
1925 3719 4.142708 TGCTTGTGTAAATATGAAGGTGCG 60.143 41.667 0.00 0.00 0.00 5.34
1926 3720 4.142687 GCTTGTGTAAATATGAAGGTGCGT 60.143 41.667 0.00 0.00 0.00 5.24
1927 3721 5.539582 TTGTGTAAATATGAAGGTGCGTC 57.460 39.130 0.00 0.00 0.00 5.19
1928 3722 4.827692 TGTGTAAATATGAAGGTGCGTCT 58.172 39.130 0.00 0.00 0.00 4.18
1929 3723 4.868171 TGTGTAAATATGAAGGTGCGTCTC 59.132 41.667 0.00 0.00 0.00 3.36
1930 3724 4.868171 GTGTAAATATGAAGGTGCGTCTCA 59.132 41.667 0.00 0.00 0.00 3.27
1972 3769 6.464465 CCCCCTCCAGTTATTTGTATGTAGAG 60.464 46.154 0.00 0.00 0.00 2.43
1975 3772 9.090103 CCCTCCAGTTATTTGTATGTAGAGATA 57.910 37.037 0.00 0.00 0.00 1.98
2160 3957 3.572642 TGGTCAGGTACTTCTCTTGTCA 58.427 45.455 0.00 0.00 34.60 3.58
2181 3978 0.907704 TGTCTGGCTGGTACCCGATT 60.908 55.000 10.07 0.00 0.00 3.34
2184 3981 2.588034 GGCTGGTACCCGATTCGC 60.588 66.667 10.07 2.35 0.00 4.70
2234 4031 6.696411 TCTAATGGTGCCTGGTTTTATTTTG 58.304 36.000 0.00 0.00 0.00 2.44
2673 4481 4.836825 CATGTGATGGAGTCTGGTAAGTT 58.163 43.478 0.00 0.00 0.00 2.66
2674 4482 4.271696 TGTGATGGAGTCTGGTAAGTTG 57.728 45.455 0.00 0.00 0.00 3.16
2678 4486 4.021104 TGATGGAGTCTGGTAAGTTGTCAG 60.021 45.833 0.00 2.10 0.00 3.51
2685 4493 6.534634 AGTCTGGTAAGTTGTCAGCTAAATT 58.465 36.000 0.00 0.00 0.00 1.82
2686 4494 7.676947 AGTCTGGTAAGTTGTCAGCTAAATTA 58.323 34.615 0.00 0.00 0.00 1.40
2687 4495 8.322091 AGTCTGGTAAGTTGTCAGCTAAATTAT 58.678 33.333 0.00 0.00 0.00 1.28
2688 4496 9.595823 GTCTGGTAAGTTGTCAGCTAAATTATA 57.404 33.333 0.00 0.00 0.00 0.98
2701 4515 8.562892 TCAGCTAAATTATATCAGAAGCTTTGC 58.437 33.333 0.00 0.00 36.74 3.68
2707 4521 7.593875 ATTATATCAGAAGCTTTGCTCGATC 57.406 36.000 0.00 0.00 38.25 3.69
2711 4525 3.620374 TCAGAAGCTTTGCTCGATCATTC 59.380 43.478 0.00 0.00 38.25 2.67
2718 4532 4.556523 GCTTTGCTCGATCATTCTTTGTTC 59.443 41.667 0.00 0.00 0.00 3.18
2720 4534 6.402550 GCTTTGCTCGATCATTCTTTGTTCTA 60.403 38.462 0.00 0.00 0.00 2.10
2724 4538 6.595326 TGCTCGATCATTCTTTGTTCTAATGT 59.405 34.615 0.00 0.00 33.35 2.71
2725 4539 7.763985 TGCTCGATCATTCTTTGTTCTAATGTA 59.236 33.333 0.00 0.00 33.35 2.29
2771 4585 5.940192 AATGCACTCGAAATGACAGTTAA 57.060 34.783 0.00 0.00 0.00 2.01
2782 4596 5.934935 AATGACAGTTAATTTCGACGGTT 57.065 34.783 0.00 0.00 0.00 4.44
2784 4598 4.121317 TGACAGTTAATTTCGACGGTTGT 58.879 39.130 0.00 0.00 0.00 3.32
2794 4608 1.679680 TCGACGGTTGTGTTTCTCTCT 59.320 47.619 0.00 0.00 0.00 3.10
2796 4610 3.504906 TCGACGGTTGTGTTTCTCTCTAT 59.495 43.478 0.00 0.00 0.00 1.98
2797 4611 4.022589 TCGACGGTTGTGTTTCTCTCTATT 60.023 41.667 0.00 0.00 0.00 1.73
2798 4612 4.090066 CGACGGTTGTGTTTCTCTCTATTG 59.910 45.833 0.00 0.00 0.00 1.90
2799 4613 4.957296 ACGGTTGTGTTTCTCTCTATTGT 58.043 39.130 0.00 0.00 0.00 2.71
2801 4615 5.820947 ACGGTTGTGTTTCTCTCTATTGTTT 59.179 36.000 0.00 0.00 0.00 2.83
2803 4617 6.363473 GGTTGTGTTTCTCTCTATTGTTTCG 58.637 40.000 0.00 0.00 0.00 3.46
2804 4618 6.202188 GGTTGTGTTTCTCTCTATTGTTTCGA 59.798 38.462 0.00 0.00 0.00 3.71
2805 4619 6.764877 TGTGTTTCTCTCTATTGTTTCGAC 57.235 37.500 0.00 0.00 0.00 4.20
2806 4620 6.277605 TGTGTTTCTCTCTATTGTTTCGACA 58.722 36.000 0.00 0.00 0.00 4.35
2809 4623 7.952637 GTGTTTCTCTCTATTGTTTCGACATTC 59.047 37.037 0.00 0.00 0.00 2.67
2810 4624 7.655732 TGTTTCTCTCTATTGTTTCGACATTCA 59.344 33.333 0.00 0.00 0.00 2.57
2812 4626 8.777865 TTCTCTCTATTGTTTCGACATTCATT 57.222 30.769 0.00 0.00 0.00 2.57
2813 4627 8.412608 TCTCTCTATTGTTTCGACATTCATTC 57.587 34.615 0.00 0.00 0.00 2.67
2825 4657 9.825972 TTTCGACATTCATTCTTTGTAGATTTC 57.174 29.630 0.00 0.00 0.00 2.17
2826 4658 8.546597 TCGACATTCATTCTTTGTAGATTTCA 57.453 30.769 0.00 0.00 0.00 2.69
2861 4693 9.816354 AATTTTTCTTTGTTTTGAGCTAAGCTA 57.184 25.926 0.00 0.00 39.88 3.32
2872 4704 3.706086 TGAGCTAAGCTACATCATCACCA 59.294 43.478 0.00 0.00 39.88 4.17
2899 4731 9.040939 TGTACATATCGTTCTTGTATGATTTGG 57.959 33.333 0.00 0.00 31.06 3.28
2900 4732 9.256477 GTACATATCGTTCTTGTATGATTTGGA 57.744 33.333 0.00 0.00 31.06 3.53
2901 4733 8.908786 ACATATCGTTCTTGTATGATTTGGAT 57.091 30.769 0.00 0.00 31.06 3.41
2907 4740 8.647796 TCGTTCTTGTATGATTTGGATAGGTAT 58.352 33.333 0.00 0.00 0.00 2.73
2919 4752 7.713734 TTTGGATAGGTATAGAATACCGGAG 57.286 40.000 9.46 0.00 42.26 4.63
2927 4760 1.404843 AGAATACCGGAGTCTCTGCC 58.595 55.000 9.46 0.00 0.00 4.85
2949 4789 1.350019 ACCCCTTGTTGTGCTAGTACC 59.650 52.381 8.60 0.00 0.00 3.34
2958 4798 7.201644 CCTTGTTGTGCTAGTACCTCATAATTG 60.202 40.741 8.60 0.00 0.00 2.32
2970 4810 8.793592 AGTACCTCATAATTGTTCCAGAAAAAC 58.206 33.333 0.00 0.00 0.00 2.43
2971 4811 7.839680 ACCTCATAATTGTTCCAGAAAAACT 57.160 32.000 0.00 0.00 0.00 2.66
2972 4812 8.934023 ACCTCATAATTGTTCCAGAAAAACTA 57.066 30.769 0.00 0.00 0.00 2.24
3006 4846 4.498009 GCATGAATACGAATTTGACCTGGG 60.498 45.833 0.00 0.00 0.00 4.45
3022 4862 1.069049 CTGGGCAGTTGGTTGGAAAAG 59.931 52.381 0.00 0.00 0.00 2.27
3027 4867 3.576550 GGCAGTTGGTTGGAAAAGGATAA 59.423 43.478 0.00 0.00 0.00 1.75
3028 4868 4.039852 GGCAGTTGGTTGGAAAAGGATAAA 59.960 41.667 0.00 0.00 0.00 1.40
3048 4888 9.120538 GGATAAAGAAATATGCTTGACTTACCA 57.879 33.333 0.00 0.00 0.00 3.25
3060 4904 5.924254 GCTTGACTTACCATTGTAAAAACCC 59.076 40.000 0.00 0.00 36.54 4.11
3064 4908 6.263617 TGACTTACCATTGTAAAAACCCACTC 59.736 38.462 0.00 0.00 36.54 3.51
3073 4917 5.751586 TGTAAAAACCCACTCTGAAGAACT 58.248 37.500 0.00 0.00 0.00 3.01
3079 4923 4.168101 ACCCACTCTGAAGAACTTGGATA 58.832 43.478 4.55 0.00 0.00 2.59
3084 4928 7.365117 CCCACTCTGAAGAACTTGGATATTAGT 60.365 40.741 4.55 0.00 0.00 2.24
3086 4930 9.522804 CACTCTGAAGAACTTGGATATTAGTAC 57.477 37.037 0.00 0.00 0.00 2.73
3105 4949 5.186198 AGTACTATTTTCACCCTGCATGTC 58.814 41.667 0.00 0.00 0.00 3.06
3171 5015 1.146263 CTGCCTTCCCGGACATACC 59.854 63.158 0.73 0.00 33.16 2.73
3688 5614 1.374631 GATGAGCCACGCAGTCACA 60.375 57.895 0.00 0.00 41.61 3.58
3697 5623 2.054363 CACGCAGTCACAGAGTTAGTG 58.946 52.381 0.00 0.00 41.61 2.74
3698 5624 1.954382 ACGCAGTCACAGAGTTAGTGA 59.046 47.619 0.00 0.00 43.23 3.41
3728 5655 6.405278 TTGACTGATTTCGCTAGGATGATA 57.595 37.500 0.00 0.00 0.00 2.15
3730 5657 5.536538 TGACTGATTTCGCTAGGATGATACT 59.463 40.000 0.00 0.00 0.00 2.12
3750 5679 9.856488 TGATACTACATGAGTTAGAAGTTTGTC 57.144 33.333 0.00 0.00 39.81 3.18
3751 5680 8.912787 ATACTACATGAGTTAGAAGTTTGTCG 57.087 34.615 0.00 0.00 39.81 4.35
3752 5681 6.746120 ACTACATGAGTTAGAAGTTTGTCGT 58.254 36.000 0.00 0.00 33.13 4.34
3753 5682 5.907197 ACATGAGTTAGAAGTTTGTCGTG 57.093 39.130 0.00 0.00 0.00 4.35
3754 5683 4.211374 ACATGAGTTAGAAGTTTGTCGTGC 59.789 41.667 0.00 0.00 0.00 5.34
3755 5684 3.128349 TGAGTTAGAAGTTTGTCGTGCC 58.872 45.455 0.00 0.00 0.00 5.01
3756 5685 2.132762 AGTTAGAAGTTTGTCGTGCCG 58.867 47.619 0.00 0.00 0.00 5.69
3757 5686 1.193874 GTTAGAAGTTTGTCGTGCCGG 59.806 52.381 0.00 0.00 0.00 6.13
3758 5687 0.320073 TAGAAGTTTGTCGTGCCGGG 60.320 55.000 2.18 0.00 0.00 5.73
3759 5688 2.593436 AAGTTTGTCGTGCCGGGG 60.593 61.111 2.18 0.00 0.00 5.73
3760 5689 2.999739 GAAGTTTGTCGTGCCGGGGA 63.000 60.000 2.18 0.00 0.00 4.81
3761 5690 3.351416 GTTTGTCGTGCCGGGGAC 61.351 66.667 8.86 8.86 0.00 4.46
3792 5721 0.538287 GGAGGCTTGGCTTGTGAAGT 60.538 55.000 0.00 0.00 0.00 3.01
3800 5729 0.040958 GGCTTGTGAAGTGACGCTTG 60.041 55.000 5.87 0.00 37.59 4.01
3809 5738 3.422303 TGACGCTTGGATGCACGC 61.422 61.111 5.56 5.56 0.00 5.34
3818 5747 2.535934 TGGATGCACGCGTAATTTTC 57.464 45.000 13.44 4.84 0.00 2.29
3881 5810 6.088085 CGCCATAATTCTTTTGAACTGTCAAC 59.912 38.462 0.00 0.00 43.52 3.18
3916 5845 4.895668 TGGATATGCATATGCTCACTGA 57.104 40.909 30.68 13.07 42.66 3.41
3917 5846 5.431179 TGGATATGCATATGCTCACTGAT 57.569 39.130 30.68 14.11 42.66 2.90
3919 5848 6.949715 TGGATATGCATATGCTCACTGATTA 58.050 36.000 30.68 11.21 42.66 1.75
3920 5849 7.046033 TGGATATGCATATGCTCACTGATTAG 58.954 38.462 30.68 0.00 42.66 1.73
3921 5850 7.046652 GGATATGCATATGCTCACTGATTAGT 58.953 38.462 25.92 0.00 42.66 2.24
3928 5942 7.412346 GCATATGCTCACTGATTAGTTATTCCG 60.412 40.741 20.64 0.00 34.67 4.30
3931 5945 5.105513 TGCTCACTGATTAGTTATTCCGACA 60.106 40.000 0.00 0.00 34.07 4.35
4064 6173 2.029649 ACCAGCATCACATTTCTGCAAC 60.030 45.455 0.00 0.00 38.37 4.17
4084 6193 5.395324 GCAACTGCACTAGGAAGGATTACTA 60.395 44.000 0.00 0.00 39.96 1.82
4113 6222 1.863155 TTGATTGGGGACAGAGGGGC 61.863 60.000 0.00 0.00 44.54 5.80
4128 6237 1.017387 GGGGCTTTTACTCTGCATCG 58.983 55.000 0.00 0.00 0.00 3.84
4130 6239 1.666189 GGGCTTTTACTCTGCATCGAC 59.334 52.381 0.00 0.00 0.00 4.20
4131 6240 1.324736 GGCTTTTACTCTGCATCGACG 59.675 52.381 0.00 0.00 0.00 5.12
4142 6251 2.204237 TGCATCGACGATGAGAATTGG 58.796 47.619 35.61 11.90 42.09 3.16
4143 6252 1.070309 GCATCGACGATGAGAATTGGC 60.070 52.381 35.61 17.45 42.09 4.52
4144 6253 2.477825 CATCGACGATGAGAATTGGCT 58.522 47.619 29.63 0.00 42.09 4.75
4151 6260 4.184629 ACGATGAGAATTGGCTAGTGAAC 58.815 43.478 0.00 0.00 0.00 3.18
4209 6320 0.963962 AACTGCAACCCTGAAGCATG 59.036 50.000 0.00 0.00 37.68 4.06
4211 6322 0.963962 CTGCAACCCTGAAGCATGTT 59.036 50.000 0.00 0.00 37.68 2.71
4212 6323 1.342174 CTGCAACCCTGAAGCATGTTT 59.658 47.619 0.00 0.00 37.68 2.83
4213 6324 1.340889 TGCAACCCTGAAGCATGTTTC 59.659 47.619 14.76 14.76 32.55 2.78
4214 6325 1.337167 GCAACCCTGAAGCATGTTTCC 60.337 52.381 18.27 2.90 0.00 3.13
4215 6326 2.242043 CAACCCTGAAGCATGTTTCCT 58.758 47.619 18.27 0.00 0.00 3.36
4216 6327 1.915141 ACCCTGAAGCATGTTTCCTG 58.085 50.000 18.27 11.41 0.00 3.86
4217 6328 1.425066 ACCCTGAAGCATGTTTCCTGA 59.575 47.619 18.27 0.74 0.00 3.86
4221 6333 4.326826 CCTGAAGCATGTTTCCTGAACTA 58.673 43.478 18.27 0.00 39.08 2.24
4222 6334 4.946157 CCTGAAGCATGTTTCCTGAACTAT 59.054 41.667 18.27 0.00 39.08 2.12
4241 6353 7.174772 TGAACTATTTCATACAAGAGCAAGCAA 59.825 33.333 0.00 0.00 36.79 3.91
4251 6366 4.212636 ACAAGAGCAAGCAAATCAAAATGC 59.787 37.500 0.00 0.00 42.87 3.56
4262 6377 3.587797 ATCAAAATGCTGCAGAACCAG 57.412 42.857 20.43 1.81 35.93 4.00
4275 6390 0.370273 GAACCAGCGCAAGATACGTG 59.630 55.000 11.47 0.00 43.02 4.49
4337 6454 3.347216 GGTTTGGTGATGACTGCACTAT 58.653 45.455 0.00 0.00 36.53 2.12
4338 6455 3.375299 GGTTTGGTGATGACTGCACTATC 59.625 47.826 0.00 0.00 36.53 2.08
4343 6460 4.122776 GGTGATGACTGCACTATCGAAAT 58.877 43.478 0.00 0.00 36.53 2.17
4352 6469 4.048504 TGCACTATCGAAATCCATGTACG 58.951 43.478 0.00 0.00 0.00 3.67
4353 6470 3.120991 GCACTATCGAAATCCATGTACGC 60.121 47.826 0.00 0.00 0.00 4.42
4367 6490 5.414454 TCCATGTACGCTAAATCAAAAGCTT 59.586 36.000 0.00 0.00 36.56 3.74
4370 6493 6.307031 TGTACGCTAAATCAAAAGCTTTCA 57.693 33.333 13.10 2.48 36.56 2.69
4372 6495 4.798574 ACGCTAAATCAAAAGCTTTCAGG 58.201 39.130 13.10 5.67 36.56 3.86
4374 6497 4.853743 CGCTAAATCAAAAGCTTTCAGGAC 59.146 41.667 13.10 0.00 36.56 3.85
4379 6502 5.803020 ATCAAAAGCTTTCAGGACGATAC 57.197 39.130 13.10 0.00 0.00 2.24
4382 6505 3.678056 AAGCTTTCAGGACGATACACA 57.322 42.857 0.00 0.00 0.00 3.72
4559 6691 2.756283 CCTCCGGTCCTCTTCGCT 60.756 66.667 0.00 0.00 0.00 4.93
4563 6695 1.030488 TCCGGTCCTCTTCGCTGTAG 61.030 60.000 0.00 0.00 0.00 2.74
4564 6696 1.313812 CCGGTCCTCTTCGCTGTAGT 61.314 60.000 0.00 0.00 0.00 2.73
4586 6718 2.876219 GTCGTCCTCCTCGTCCAC 59.124 66.667 0.00 0.00 0.00 4.02
4588 6720 4.477975 CGTCCTCCTCGTCCACGC 62.478 72.222 0.00 0.00 39.60 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.750373 TTATCGCCTTGGCCTCGGC 62.750 63.158 21.58 21.58 42.86 5.54
8 9 1.153249 TTTATCGCCTTGGCCTCGG 60.153 57.895 3.32 5.27 0.00 4.63
9 10 0.742990 TGTTTATCGCCTTGGCCTCG 60.743 55.000 3.32 2.38 0.00 4.63
64 65 1.467342 TCGAGGTCGTCTGTGTGTATG 59.533 52.381 0.00 0.00 40.80 2.39
66 67 1.736126 GATCGAGGTCGTCTGTGTGTA 59.264 52.381 0.00 0.00 40.80 2.90
67 68 0.522180 GATCGAGGTCGTCTGTGTGT 59.478 55.000 0.00 0.00 40.80 3.72
68 69 0.521735 TGATCGAGGTCGTCTGTGTG 59.478 55.000 0.00 0.00 40.80 3.82
71 72 0.658368 CGATGATCGAGGTCGTCTGT 59.342 55.000 9.62 0.00 43.74 3.41
72 73 0.040870 CCGATGATCGAGGTCGTCTG 60.041 60.000 17.52 1.89 43.74 3.51
73 74 1.787057 GCCGATGATCGAGGTCGTCT 61.787 60.000 17.52 0.00 43.74 4.18
74 75 1.370657 GCCGATGATCGAGGTCGTC 60.371 63.158 17.52 7.04 43.74 4.20
75 76 2.722487 GCCGATGATCGAGGTCGT 59.278 61.111 17.52 0.00 43.74 4.34
76 77 2.427575 CGCCGATGATCGAGGTCG 60.428 66.667 17.52 9.95 43.74 4.79
77 78 2.049985 CCGCCGATGATCGAGGTC 60.050 66.667 17.52 1.66 43.74 3.85
78 79 2.833582 ACCGCCGATGATCGAGGT 60.834 61.111 22.49 22.49 43.74 3.85
79 80 2.355126 CACCGCCGATGATCGAGG 60.355 66.667 17.52 19.93 43.74 4.63
80 81 2.355126 CCACCGCCGATGATCGAG 60.355 66.667 17.52 9.68 43.74 4.04
81 82 2.831284 TCCACCGCCGATGATCGA 60.831 61.111 17.52 0.00 43.74 3.59
82 83 2.355126 CTCCACCGCCGATGATCG 60.355 66.667 8.05 8.05 40.07 3.69
83 84 1.006805 CTCTCCACCGCCGATGATC 60.007 63.158 0.00 0.00 0.00 2.92
84 85 3.133014 CTCTCCACCGCCGATGAT 58.867 61.111 0.00 0.00 0.00 2.45
176 1923 1.070821 TCTTTCTTCGTGCATCGCTG 58.929 50.000 0.00 0.00 39.67 5.18
915 2686 2.642139 CATGCGTTCTTCATGGCTTT 57.358 45.000 0.00 0.00 38.06 3.51
969 2741 5.532406 GCAGATGGCATAAATACCAGAAGAA 59.468 40.000 0.00 0.00 43.97 2.52
1174 2952 1.227999 AACCTTGCATGGACGACACG 61.228 55.000 24.48 0.00 0.00 4.49
1236 3014 9.646427 GCATTTCACCAAAGTTAAACCATATAA 57.354 29.630 0.00 0.00 0.00 0.98
1239 3017 6.459923 GGCATTTCACCAAAGTTAAACCATA 58.540 36.000 0.00 0.00 0.00 2.74
1264 3042 7.680442 AAAGAAGATCAGAAAGTTAGGCTTC 57.320 36.000 0.00 0.00 36.17 3.86
1266 3044 7.175816 GGAAAAAGAAGATCAGAAAGTTAGGCT 59.824 37.037 0.00 0.00 0.00 4.58
1431 3209 5.902613 TGTGAATTCCAGGAGCTAAATTG 57.097 39.130 2.27 0.00 0.00 2.32
1701 3495 7.008266 CCACAATGAACAAAACAATATCGTAGC 59.992 37.037 0.00 0.00 0.00 3.58
1729 3523 0.179225 CGTACGCATGTGTGAAAGGC 60.179 55.000 22.00 4.42 0.00 4.35
1868 3662 5.977635 ACATATCCTTGACAGTCGAATTCA 58.022 37.500 6.22 0.00 0.00 2.57
1947 3744 4.519906 ACATACAAATAACTGGAGGGGG 57.480 45.455 0.00 0.00 0.00 5.40
2007 3804 3.753272 TCTGCAGACAAATAACTCAAGCC 59.247 43.478 13.74 0.00 0.00 4.35
2037 3834 1.635817 TTCCTACATCTGCTGCCCCC 61.636 60.000 0.00 0.00 0.00 5.40
2181 3978 5.349270 ACAGTTATAACAAAATACTGCGCGA 59.651 36.000 12.10 0.00 0.00 5.87
2184 3981 6.959311 GGTCACAGTTATAACAAAATACTGCG 59.041 38.462 17.65 0.00 0.00 5.18
2234 4031 2.949644 ACAGTTGCCTTAGAACACAACC 59.050 45.455 0.00 0.00 42.61 3.77
2489 4297 1.047801 TCAGTGCTTGTAGTGCAGGA 58.952 50.000 0.00 0.00 41.41 3.86
2673 4481 9.618890 AAAGCTTCTGATATAATTTAGCTGACA 57.381 29.630 0.00 0.00 37.54 3.58
2674 4482 9.875675 CAAAGCTTCTGATATAATTTAGCTGAC 57.124 33.333 0.00 0.00 37.54 3.51
2678 4486 7.743838 CGAGCAAAGCTTCTGATATAATTTAGC 59.256 37.037 0.00 0.00 39.88 3.09
2685 4493 6.089249 TGATCGAGCAAAGCTTCTGATATA 57.911 37.500 0.00 0.00 39.88 0.86
2686 4494 4.953667 TGATCGAGCAAAGCTTCTGATAT 58.046 39.130 0.00 0.00 39.88 1.63
2687 4495 4.391405 TGATCGAGCAAAGCTTCTGATA 57.609 40.909 0.00 0.00 39.88 2.15
2688 4496 3.257469 TGATCGAGCAAAGCTTCTGAT 57.743 42.857 0.00 0.00 39.88 2.90
2689 4497 2.749280 TGATCGAGCAAAGCTTCTGA 57.251 45.000 0.00 0.00 39.88 3.27
2690 4498 3.622163 AGAATGATCGAGCAAAGCTTCTG 59.378 43.478 14.55 1.71 39.88 3.02
2691 4499 3.871485 AGAATGATCGAGCAAAGCTTCT 58.129 40.909 7.76 9.52 39.88 2.85
2741 4555 5.904080 GTCATTTCGAGTGCATTTACTATGC 59.096 40.000 2.90 2.90 44.76 3.14
2749 4563 5.940192 TTAACTGTCATTTCGAGTGCATT 57.060 34.783 0.00 0.00 0.00 3.56
2751 4565 5.940192 AATTAACTGTCATTTCGAGTGCA 57.060 34.783 0.00 0.00 0.00 4.57
2771 4585 3.463944 AGAGAAACACAACCGTCGAAAT 58.536 40.909 0.00 0.00 0.00 2.17
2779 4593 6.202188 TCGAAACAATAGAGAGAAACACAACC 59.798 38.462 0.00 0.00 0.00 3.77
2782 4596 6.277605 TGTCGAAACAATAGAGAGAAACACA 58.722 36.000 0.00 0.00 30.70 3.72
2784 4598 7.655732 TGAATGTCGAAACAATAGAGAGAAACA 59.344 33.333 0.00 0.00 39.30 2.83
2796 4610 8.148807 TCTACAAAGAATGAATGTCGAAACAA 57.851 30.769 0.00 0.00 39.30 2.83
2797 4611 7.722795 TCTACAAAGAATGAATGTCGAAACA 57.277 32.000 0.00 0.00 40.38 2.83
2798 4612 9.612620 AAATCTACAAAGAATGAATGTCGAAAC 57.387 29.630 0.00 0.00 34.73 2.78
2799 4613 9.825972 GAAATCTACAAAGAATGAATGTCGAAA 57.174 29.630 0.00 0.00 34.73 3.46
2801 4615 8.546597 TGAAATCTACAAAGAATGAATGTCGA 57.453 30.769 0.00 0.00 34.73 4.20
2837 4669 8.247562 TGTAGCTTAGCTCAAAACAAAGAAAAA 58.752 29.630 11.09 0.00 40.44 1.94
2841 4673 6.710295 TGATGTAGCTTAGCTCAAAACAAAGA 59.290 34.615 11.09 0.00 40.44 2.52
2847 4679 5.586243 GGTGATGATGTAGCTTAGCTCAAAA 59.414 40.000 11.09 2.57 40.44 2.44
2852 4684 4.102210 ACATGGTGATGATGTAGCTTAGCT 59.898 41.667 12.67 12.67 36.67 3.32
2861 4693 6.101650 ACGATATGTACATGGTGATGATGT 57.898 37.500 18.81 0.00 37.75 3.06
2899 4731 7.496591 CAGAGACTCCGGTATTCTATACCTATC 59.503 44.444 0.00 3.02 35.49 2.08
2900 4732 7.340256 CAGAGACTCCGGTATTCTATACCTAT 58.660 42.308 0.00 0.00 35.49 2.57
2901 4733 6.709281 CAGAGACTCCGGTATTCTATACCTA 58.291 44.000 0.00 2.30 35.49 3.08
2907 4740 2.584236 GGCAGAGACTCCGGTATTCTA 58.416 52.381 0.00 0.00 0.00 2.10
2919 4752 2.113243 AACAAGGGGTCGGCAGAGAC 62.113 60.000 0.00 0.00 40.25 3.36
2927 4760 0.034896 ACTAGCACAACAAGGGGTCG 59.965 55.000 0.00 0.00 30.98 4.79
2930 4763 1.628846 AGGTACTAGCACAACAAGGGG 59.371 52.381 0.00 0.00 36.02 4.79
2958 4798 9.129209 GCAATCAAGTTATAGTTTTTCTGGAAC 57.871 33.333 0.00 0.00 0.00 3.62
2977 4817 6.751425 GGTCAAATTCGTATTCATGCAATCAA 59.249 34.615 0.00 0.00 0.00 2.57
2992 4832 1.068333 CAACTGCCCAGGTCAAATTCG 60.068 52.381 0.00 0.00 0.00 3.34
2996 4836 0.032615 AACCAACTGCCCAGGTCAAA 60.033 50.000 0.00 0.00 33.74 2.69
3006 4846 4.864704 TTATCCTTTTCCAACCAACTGC 57.135 40.909 0.00 0.00 0.00 4.40
3022 4862 9.120538 TGGTAAGTCAAGCATATTTCTTTATCC 57.879 33.333 0.00 0.00 0.00 2.59
3027 4867 8.353423 ACAATGGTAAGTCAAGCATATTTCTT 57.647 30.769 0.00 0.00 36.60 2.52
3028 4868 7.944729 ACAATGGTAAGTCAAGCATATTTCT 57.055 32.000 0.00 0.00 36.60 2.52
3046 4886 5.534654 TCTTCAGAGTGGGTTTTTACAATGG 59.465 40.000 0.00 0.00 0.00 3.16
3048 4888 6.833933 AGTTCTTCAGAGTGGGTTTTTACAAT 59.166 34.615 0.00 0.00 0.00 2.71
3051 4891 6.459710 CCAAGTTCTTCAGAGTGGGTTTTTAC 60.460 42.308 0.00 0.00 0.00 2.01
3055 4899 3.202151 TCCAAGTTCTTCAGAGTGGGTTT 59.798 43.478 0.00 0.00 0.00 3.27
3060 4904 9.522804 GTACTAATATCCAAGTTCTTCAGAGTG 57.477 37.037 0.00 0.00 0.00 3.51
3079 4923 7.346471 ACATGCAGGGTGAAAATAGTACTAAT 58.654 34.615 6.70 0.00 0.00 1.73
3084 4928 4.188462 CGACATGCAGGGTGAAAATAGTA 58.812 43.478 2.31 0.00 0.00 1.82
3086 4930 3.009723 ACGACATGCAGGGTGAAAATAG 58.990 45.455 2.31 0.00 0.00 1.73
3088 4932 1.909700 ACGACATGCAGGGTGAAAAT 58.090 45.000 2.31 0.00 0.00 1.82
3091 4935 0.888736 CCAACGACATGCAGGGTGAA 60.889 55.000 2.31 0.00 0.00 3.18
3092 4936 1.302431 CCAACGACATGCAGGGTGA 60.302 57.895 2.31 0.00 0.00 4.02
3093 4937 2.981560 GCCAACGACATGCAGGGTG 61.982 63.158 2.31 0.00 0.00 4.61
3094 4938 2.672996 GCCAACGACATGCAGGGT 60.673 61.111 2.31 0.00 0.00 4.34
3095 4939 2.672651 TGCCAACGACATGCAGGG 60.673 61.111 2.31 0.00 0.00 4.45
3105 4949 1.021202 TGTTTCCTTCACTGCCAACG 58.979 50.000 0.00 0.00 0.00 4.10
3171 5015 7.233553 TGGGAGATAGATAAGTTATGTCAGTGG 59.766 40.741 0.00 0.00 0.00 4.00
3589 5515 1.151587 AGGTTGTCCATCACCCCCT 60.152 57.895 0.00 0.00 35.89 4.79
3637 5563 2.520500 TGCGGGGCTTTGCTTTCA 60.521 55.556 0.00 0.00 0.00 2.69
3688 5614 6.013379 TCAGTCAAAGGAGATCACTAACTCT 58.987 40.000 0.00 0.00 34.11 3.24
3697 5623 4.187694 AGCGAAATCAGTCAAAGGAGATC 58.812 43.478 0.00 0.00 0.00 2.75
3698 5624 4.213564 AGCGAAATCAGTCAAAGGAGAT 57.786 40.909 0.00 0.00 0.00 2.75
3728 5655 6.641314 CACGACAAACTTCTAACTCATGTAGT 59.359 38.462 0.00 0.00 41.49 2.73
3730 5657 5.404366 GCACGACAAACTTCTAACTCATGTA 59.596 40.000 0.00 0.00 0.00 2.29
3759 5688 3.878519 CTCCGTCTCGCCTCCGTC 61.879 72.222 0.00 0.00 35.54 4.79
3763 5692 3.453679 AAGCCTCCGTCTCGCCTC 61.454 66.667 0.00 0.00 0.00 4.70
3764 5693 3.764466 CAAGCCTCCGTCTCGCCT 61.764 66.667 0.00 0.00 0.00 5.52
3765 5694 4.821589 CCAAGCCTCCGTCTCGCC 62.822 72.222 0.00 0.00 0.00 5.54
3767 5696 3.302347 AAGCCAAGCCTCCGTCTCG 62.302 63.158 0.00 0.00 0.00 4.04
3768 5697 1.743252 CAAGCCAAGCCTCCGTCTC 60.743 63.158 0.00 0.00 0.00 3.36
3769 5698 2.348998 CAAGCCAAGCCTCCGTCT 59.651 61.111 0.00 0.00 0.00 4.18
3792 5721 3.422303 GCGTGCATCCAAGCGTCA 61.422 61.111 0.00 0.00 36.76 4.35
3800 5729 2.825086 AGAAAATTACGCGTGCATCC 57.175 45.000 24.59 6.63 0.00 3.51
3845 5774 4.780815 AGAATTATGGCGTGATCCTCAAA 58.219 39.130 0.00 0.00 0.00 2.69
3866 5795 5.342433 TGAATGCAGTTGACAGTTCAAAAG 58.658 37.500 0.00 0.00 43.52 2.27
3881 5810 4.337274 TGCATATCCAAGTTCTGAATGCAG 59.663 41.667 6.88 0.00 38.98 4.41
3916 5845 9.319143 CAGAATCTTCTTGTCGGAATAACTAAT 57.681 33.333 0.00 0.00 34.74 1.73
3917 5846 7.764443 CCAGAATCTTCTTGTCGGAATAACTAA 59.236 37.037 0.00 0.00 34.74 2.24
3919 5848 6.070767 TCCAGAATCTTCTTGTCGGAATAACT 60.071 38.462 0.00 0.00 34.74 2.24
3920 5849 6.106673 TCCAGAATCTTCTTGTCGGAATAAC 58.893 40.000 0.00 0.00 34.74 1.89
3921 5850 6.294361 TCCAGAATCTTCTTGTCGGAATAA 57.706 37.500 0.00 0.00 34.74 1.40
3928 5942 7.748241 CGATTTCTTTTCCAGAATCTTCTTGTC 59.252 37.037 0.00 0.00 41.42 3.18
3931 5945 6.207417 TGCGATTTCTTTTCCAGAATCTTCTT 59.793 34.615 0.00 0.00 41.42 2.52
3983 5997 2.022195 CCTGCAACATCAGCTGCTAAT 58.978 47.619 9.47 0.00 37.71 1.73
4064 6173 5.163405 TGCTTAGTAATCCTTCCTAGTGCAG 60.163 44.000 0.00 0.00 0.00 4.41
4070 6179 6.674573 ACTCTCTGCTTAGTAATCCTTCCTA 58.325 40.000 0.00 0.00 0.00 2.94
4084 6193 1.988107 TCCCCAATCAACTCTCTGCTT 59.012 47.619 0.00 0.00 0.00 3.91
4113 6222 4.105486 TCATCGTCGATGCAGAGTAAAAG 58.895 43.478 26.86 2.77 39.63 2.27
4128 6237 4.046938 TCACTAGCCAATTCTCATCGTC 57.953 45.455 0.00 0.00 0.00 4.20
4130 6239 4.183865 TGTTCACTAGCCAATTCTCATCG 58.816 43.478 0.00 0.00 0.00 3.84
4131 6240 5.645497 AGTTGTTCACTAGCCAATTCTCATC 59.355 40.000 0.00 0.00 31.97 2.92
4142 6251 6.598753 TGTTTGTAAGAGTTGTTCACTAGC 57.401 37.500 0.00 0.00 35.01 3.42
4143 6252 8.665685 AGTTTGTTTGTAAGAGTTGTTCACTAG 58.334 33.333 0.00 0.00 35.01 2.57
4144 6253 8.447833 CAGTTTGTTTGTAAGAGTTGTTCACTA 58.552 33.333 0.00 0.00 35.01 2.74
4151 6260 7.016361 AGTAGCAGTTTGTTTGTAAGAGTTG 57.984 36.000 0.00 0.00 0.00 3.16
4209 6320 8.178313 GCTCTTGTATGAAATAGTTCAGGAAAC 58.822 37.037 11.67 7.45 46.75 2.78
4211 6322 7.394016 TGCTCTTGTATGAAATAGTTCAGGAA 58.606 34.615 11.67 3.39 46.75 3.36
4212 6323 6.946340 TGCTCTTGTATGAAATAGTTCAGGA 58.054 36.000 11.67 0.00 46.75 3.86
4213 6324 7.615582 TTGCTCTTGTATGAAATAGTTCAGG 57.384 36.000 11.67 0.22 46.75 3.86
4214 6325 7.148356 TGCTTGCTCTTGTATGAAATAGTTCAG 60.148 37.037 11.67 0.00 46.75 3.02
4216 6327 7.076842 TGCTTGCTCTTGTATGAAATAGTTC 57.923 36.000 0.00 0.00 0.00 3.01
4217 6328 7.452880 TTGCTTGCTCTTGTATGAAATAGTT 57.547 32.000 0.00 0.00 0.00 2.24
4221 6333 6.927416 TGATTTGCTTGCTCTTGTATGAAAT 58.073 32.000 0.00 0.00 0.00 2.17
4222 6334 6.330004 TGATTTGCTTGCTCTTGTATGAAA 57.670 33.333 0.00 0.00 0.00 2.69
4241 6353 3.863400 GCTGGTTCTGCAGCATTTTGATT 60.863 43.478 9.47 0.00 43.40 2.57
4251 6366 1.303799 ATCTTGCGCTGGTTCTGCAG 61.304 55.000 7.63 7.63 40.15 4.41
4262 6377 0.652592 AATCTGCACGTATCTTGCGC 59.347 50.000 0.00 0.00 43.34 6.09
4275 6390 4.062677 AGAGCTGAGAATCTGAATCTGC 57.937 45.455 0.00 5.93 35.94 4.26
4314 6429 1.210155 GCAGTCATCACCAAACCGC 59.790 57.895 0.00 0.00 0.00 5.68
4337 6454 5.353111 TGATTTAGCGTACATGGATTTCGA 58.647 37.500 0.00 0.00 0.00 3.71
4338 6455 5.651172 TGATTTAGCGTACATGGATTTCG 57.349 39.130 0.00 0.00 0.00 3.46
4343 6460 4.941263 AGCTTTTGATTTAGCGTACATGGA 59.059 37.500 0.00 0.00 42.18 3.41
4352 6469 4.853743 CGTCCTGAAAGCTTTTGATTTAGC 59.146 41.667 14.05 0.00 38.24 3.09
4353 6470 6.241207 TCGTCCTGAAAGCTTTTGATTTAG 57.759 37.500 14.05 5.54 38.24 1.85
4367 6490 1.616374 TGCTGTGTGTATCGTCCTGAA 59.384 47.619 0.00 0.00 0.00 3.02
4370 6493 0.108615 GCTGCTGTGTGTATCGTCCT 60.109 55.000 0.00 0.00 0.00 3.85
4372 6495 0.456142 TCGCTGCTGTGTGTATCGTC 60.456 55.000 3.96 0.00 0.00 4.20
4374 6497 0.848942 GATCGCTGCTGTGTGTATCG 59.151 55.000 3.96 0.00 0.00 2.92
4379 6502 2.104859 CCAGGATCGCTGCTGTGTG 61.105 63.158 7.02 0.00 39.06 3.82
4382 6505 0.463295 CAATCCAGGATCGCTGCTGT 60.463 55.000 1.11 0.00 39.06 4.40
4453 6582 4.467084 CGGGTGTGGGGATCGTGG 62.467 72.222 0.00 0.00 0.00 4.94
4543 6675 1.030488 TACAGCGAAGAGGACCGGAG 61.030 60.000 9.46 0.00 0.00 4.63
4559 6691 0.745845 GGAGGACGACGGCTACTACA 60.746 60.000 0.00 0.00 0.00 2.74
4563 6695 2.821688 CGAGGAGGACGACGGCTAC 61.822 68.421 0.00 0.00 0.00 3.58
4564 6696 2.513204 CGAGGAGGACGACGGCTA 60.513 66.667 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.