Multiple sequence alignment - TraesCS2D01G354300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G354300 chr2D 100.000 6667 0 0 1 6667 454963680 454970346 0.000000e+00 12312.0
1 TraesCS2D01G354300 chr2D 95.574 723 30 2 5946 6667 182127573 182126852 0.000000e+00 1157.0
2 TraesCS2D01G354300 chr2D 94.329 723 38 3 5947 6667 270625909 270625188 0.000000e+00 1105.0
3 TraesCS2D01G354300 chr2D 93.906 722 42 2 5947 6667 282481929 282481209 0.000000e+00 1088.0
4 TraesCS2D01G354300 chr2D 93.785 724 43 2 5945 6667 273289448 273290170 0.000000e+00 1086.0
5 TraesCS2D01G354300 chr2D 85.294 136 17 3 1 134 8476279 8476413 3.240000e-28 137.0
6 TraesCS2D01G354300 chr2B 95.455 2112 69 10 3829 5919 534710940 534713045 0.000000e+00 3343.0
7 TraesCS2D01G354300 chr2B 88.571 1120 80 17 2253 3357 534708676 534709762 0.000000e+00 1315.0
8 TraesCS2D01G354300 chr2B 87.241 1160 65 33 774 1916 534707174 534708267 0.000000e+00 1245.0
9 TraesCS2D01G354300 chr2B 87.097 496 38 14 3346 3832 534710354 534710832 7.610000e-149 538.0
10 TraesCS2D01G354300 chr2B 79.231 520 47 35 2 475 534703432 534703936 8.400000e-79 305.0
11 TraesCS2D01G354300 chr2B 85.455 220 22 8 502 720 534705525 534705735 3.130000e-53 220.0
12 TraesCS2D01G354300 chr2B 96.939 98 3 0 2099 2196 534708340 534708437 1.490000e-36 165.0
13 TraesCS2D01G354300 chr2A 95.864 1644 53 7 4294 5934 595342356 595340725 0.000000e+00 2645.0
14 TraesCS2D01G354300 chr2A 89.552 1608 93 36 2253 3841 595344528 595342977 0.000000e+00 1969.0
15 TraesCS2D01G354300 chr2A 88.194 1440 79 47 540 1950 595346277 595344900 0.000000e+00 1633.0
16 TraesCS2D01G354300 chr2A 95.767 189 8 0 3885 4073 595342540 595342352 8.400000e-79 305.0
17 TraesCS2D01G354300 chr2A 95.745 141 6 0 2056 2196 595344891 595344751 1.870000e-55 228.0
18 TraesCS2D01G354300 chr2A 93.243 74 3 2 3769 3841 595342917 595342845 2.540000e-19 108.0
19 TraesCS2D01G354300 chr3D 94.606 723 35 4 5947 6667 241021475 241022195 0.000000e+00 1116.0
20 TraesCS2D01G354300 chr1D 94.467 723 37 3 5947 6667 275607100 275606379 0.000000e+00 1110.0
21 TraesCS2D01G354300 chrUn 94.044 722 41 2 5947 6667 240219230 240218510 0.000000e+00 1094.0
22 TraesCS2D01G354300 chrUn 94.044 722 41 2 5947 6667 242086165 242086885 0.000000e+00 1094.0
23 TraesCS2D01G354300 chrUn 81.818 99 16 2 1530 1627 172237828 172237731 1.540000e-11 82.4
24 TraesCS2D01G354300 chr7D 93.629 722 43 3 5947 6667 344309530 344308811 0.000000e+00 1075.0
25 TraesCS2D01G354300 chr6A 80.220 910 175 4 4581 5486 439296333 439295425 0.000000e+00 678.0
26 TraesCS2D01G354300 chr6A 82.270 423 66 7 1340 1753 439299821 439299399 2.290000e-94 357.0
27 TraesCS2D01G354300 chr6A 83.838 99 14 2 1530 1627 11116153 11116056 7.120000e-15 93.5
28 TraesCS2D01G354300 chr6B 79.605 912 177 7 4581 5486 447661694 447662602 0.000000e+00 645.0
29 TraesCS2D01G354300 chr6B 82.609 437 69 5 1328 1758 447658346 447658781 4.880000e-101 379.0
30 TraesCS2D01G354300 chr6D 79.341 910 183 4 4581 5486 286785424 286786332 9.430000e-178 634.0
31 TraesCS2D01G354300 chr6D 81.839 435 69 8 1328 1753 286780929 286781362 2.290000e-94 357.0
32 TraesCS2D01G354300 chr6D 85.000 140 14 6 1 134 58834849 58834711 1.170000e-27 135.0
33 TraesCS2D01G354300 chr3A 81.279 438 60 6 1347 1766 734526477 734526044 1.070000e-87 335.0
34 TraesCS2D01G354300 chr7A 90.511 137 12 1 3 138 721884674 721884538 5.310000e-41 180.0
35 TraesCS2D01G354300 chr4B 88.060 134 12 3 9 138 474484749 474484616 8.950000e-34 156.0
36 TraesCS2D01G354300 chr4A 86.525 141 16 2 1 140 106576459 106576321 1.160000e-32 152.0
37 TraesCS2D01G354300 chr4A 85.106 141 20 1 1 140 24498228 24498088 6.970000e-30 143.0
38 TraesCS2D01G354300 chr4A 85.000 140 18 3 1 138 516358760 516358622 9.020000e-29 139.0
39 TraesCS2D01G354300 chr7B 86.567 134 16 2 1 133 28054952 28055084 5.390000e-31 147.0
40 TraesCS2D01G354300 chr5B 84.559 136 19 2 1 134 575832280 575832415 4.190000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G354300 chr2D 454963680 454970346 6666 False 12312.000000 12312 100.000000 1 6667 1 chr2D.!!$F3 6666
1 TraesCS2D01G354300 chr2D 182126852 182127573 721 True 1157.000000 1157 95.574000 5946 6667 1 chr2D.!!$R1 721
2 TraesCS2D01G354300 chr2D 270625188 270625909 721 True 1105.000000 1105 94.329000 5947 6667 1 chr2D.!!$R2 720
3 TraesCS2D01G354300 chr2D 282481209 282481929 720 True 1088.000000 1088 93.906000 5947 6667 1 chr2D.!!$R3 720
4 TraesCS2D01G354300 chr2D 273289448 273290170 722 False 1086.000000 1086 93.785000 5945 6667 1 chr2D.!!$F2 722
5 TraesCS2D01G354300 chr2B 534703432 534713045 9613 False 1018.714286 3343 88.569857 2 5919 7 chr2B.!!$F1 5917
6 TraesCS2D01G354300 chr2A 595340725 595346277 5552 True 1148.000000 2645 93.060833 540 5934 6 chr2A.!!$R1 5394
7 TraesCS2D01G354300 chr3D 241021475 241022195 720 False 1116.000000 1116 94.606000 5947 6667 1 chr3D.!!$F1 720
8 TraesCS2D01G354300 chr1D 275606379 275607100 721 True 1110.000000 1110 94.467000 5947 6667 1 chr1D.!!$R1 720
9 TraesCS2D01G354300 chrUn 240218510 240219230 720 True 1094.000000 1094 94.044000 5947 6667 1 chrUn.!!$R2 720
10 TraesCS2D01G354300 chrUn 242086165 242086885 720 False 1094.000000 1094 94.044000 5947 6667 1 chrUn.!!$F1 720
11 TraesCS2D01G354300 chr7D 344308811 344309530 719 True 1075.000000 1075 93.629000 5947 6667 1 chr7D.!!$R1 720
12 TraesCS2D01G354300 chr6A 439295425 439299821 4396 True 517.500000 678 81.245000 1340 5486 2 chr6A.!!$R2 4146
13 TraesCS2D01G354300 chr6B 447658346 447662602 4256 False 512.000000 645 81.107000 1328 5486 2 chr6B.!!$F1 4158
14 TraesCS2D01G354300 chr6D 286785424 286786332 908 False 634.000000 634 79.341000 4581 5486 1 chr6D.!!$F2 905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 3771 0.035458 CATTCATCCGACCTAGGGGC 59.965 60.000 14.81 3.61 35.63 5.80 F
1215 4245 0.100861 GTCCGTCCATCCGTCTTCTC 59.899 60.000 0.00 0.00 0.00 2.87 F
1987 5116 0.106894 GGAGCTTATCCCGTTCCTGG 59.893 60.000 0.00 0.00 43.01 4.45 F
1995 5124 0.178955 TCCCGTTCCTGGTGTGTAGA 60.179 55.000 0.00 0.00 0.00 2.59 F
2000 5129 0.320374 TTCCTGGTGTGTAGAAGCGG 59.680 55.000 0.00 0.00 0.00 5.52 F
2819 8077 0.329261 TGCTGAACAGGCTAGCCATT 59.671 50.000 34.70 26.93 38.92 3.16 F
2890 8149 0.608856 CCACAGCTGGCCATGTTACA 60.609 55.000 19.93 0.00 0.00 2.41 F
3439 9310 1.202879 TCCAAGCTGAACCATTTCCGT 60.203 47.619 0.00 0.00 0.00 4.69 F
3673 9544 1.674359 TGCGTTTGTGTGACATTCCT 58.326 45.000 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 5120 0.106894 ATAAGCTGGCCCGCTTCTAC 59.893 55.000 34.16 0.00 46.68 2.59 R
2051 5180 0.255033 AATAAGGTGGTCCGCTTCCC 59.745 55.000 1.66 0.00 39.05 3.97 R
3706 9577 1.396653 AGGCTCATAATGCACCTTGC 58.603 50.000 0.00 0.00 45.29 4.01 R
3842 10101 2.301346 ACAGGTTCAAGTTTCAGCAGG 58.699 47.619 0.00 0.00 0.00 4.85 R
3858 10117 5.163540 GGTACAGGGATCGCTATATTACAGG 60.164 48.000 12.54 0.00 0.00 4.00 R
4494 11062 1.105167 TGCATATTCCTGCTGCAGCC 61.105 55.000 34.64 17.82 40.75 4.85 R
4685 11306 2.279069 ACGGCAGAGGTCAGACCAG 61.279 63.158 22.31 11.83 41.95 4.00 R
5426 12050 1.493950 GCAACGAGATGGCGATGGAG 61.494 60.000 0.00 0.00 35.05 3.86 R
5769 12393 3.877508 CGTCTCAAAAGGAAAACCAGTCT 59.122 43.478 0.00 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.448453 AGTGTAGTGTGAGGGAGTAGC 58.552 52.381 0.00 0.00 0.00 3.58
25 26 1.132643 GTGTAGTGTGAGGGAGTAGCG 59.867 57.143 0.00 0.00 0.00 4.26
27 28 0.622136 TAGTGTGAGGGAGTAGCGGA 59.378 55.000 0.00 0.00 0.00 5.54
29 30 0.108756 GTGTGAGGGAGTAGCGGAAC 60.109 60.000 0.00 0.00 0.00 3.62
50 51 3.796717 ACGATATGTGTGCATCAACGTAG 59.203 43.478 15.91 4.82 36.92 3.51
51 52 3.796717 CGATATGTGTGCATCAACGTAGT 59.203 43.478 0.00 0.00 38.51 2.73
68 77 5.234752 ACGTAGTTGCATGAGTTTGTATGA 58.765 37.500 0.00 0.00 37.78 2.15
120 130 5.233957 TGTGGATTGCATTATTTGAGACG 57.766 39.130 0.00 0.00 0.00 4.18
126 136 2.670905 TGCATTATTTGAGACGTGACCG 59.329 45.455 0.00 0.00 40.83 4.79
129 139 3.389925 TTATTTGAGACGTGACCGGTT 57.610 42.857 9.42 0.00 38.78 4.44
135 145 0.595095 AGACGTGACCGGTTAGTGTC 59.405 55.000 18.73 18.73 38.78 3.67
137 147 1.443194 CGTGACCGGTTAGTGTCCG 60.443 63.158 9.42 0.00 46.49 4.79
138 148 1.735559 GTGACCGGTTAGTGTCCGC 60.736 63.158 9.42 0.00 45.71 5.54
140 150 3.273080 GACCGGTTAGTGTCCGCGT 62.273 63.158 9.42 0.00 45.71 6.01
141 151 2.505557 CCGGTTAGTGTCCGCGTC 60.506 66.667 4.92 0.00 45.71 5.19
142 152 2.564975 CGGTTAGTGTCCGCGTCT 59.435 61.111 4.92 0.27 41.48 4.18
143 153 1.800315 CGGTTAGTGTCCGCGTCTG 60.800 63.158 4.92 0.00 41.48 3.51
144 154 2.092882 GGTTAGTGTCCGCGTCTGC 61.093 63.158 4.92 0.00 37.91 4.26
157 167 4.408821 TCTGCCGGCGCTGGATTT 62.409 61.111 39.24 0.00 34.85 2.17
161 171 3.746889 CCGGCGCTGGATTTGCAA 61.747 61.111 32.31 0.00 0.00 4.08
163 173 1.802715 CGGCGCTGGATTTGCAAAG 60.803 57.895 18.19 4.70 0.00 2.77
165 175 1.010419 GGCGCTGGATTTGCAAAGTG 61.010 55.000 18.19 11.20 0.00 3.16
166 176 0.039256 GCGCTGGATTTGCAAAGTGA 60.039 50.000 18.19 2.54 0.00 3.41
171 199 3.508762 CTGGATTTGCAAAGTGATGCTC 58.491 45.455 18.19 7.99 46.54 4.26
216 244 7.513371 AGAACGTTCTCTCTCTCTAAAGAAA 57.487 36.000 24.93 0.00 29.94 2.52
217 245 7.942990 AGAACGTTCTCTCTCTCTAAAGAAAA 58.057 34.615 24.93 0.00 29.94 2.29
218 246 8.079809 AGAACGTTCTCTCTCTCTAAAGAAAAG 58.920 37.037 24.93 0.00 29.94 2.27
237 265 0.175073 GGAGAACGTTAGGCGATGGT 59.825 55.000 0.00 0.00 44.77 3.55
244 272 3.602483 ACGTTAGGCGATGGTTTGTAAT 58.398 40.909 0.00 0.00 44.77 1.89
249 277 3.417101 AGGCGATGGTTTGTAATCACAA 58.583 40.909 0.00 0.00 42.93 3.33
251 279 4.096382 AGGCGATGGTTTGTAATCACAATC 59.904 41.667 0.00 0.00 44.01 2.67
287 317 2.037381 TGGAGTACCGTGCATGTAACAA 59.963 45.455 4.96 0.00 39.42 2.83
292 322 3.829886 ACCGTGCATGTAACAAGATTG 57.170 42.857 4.96 0.00 0.00 2.67
310 340 9.254133 ACAAGATTGTTCATCATCTAATCGTAG 57.746 33.333 0.00 0.00 38.47 3.51
311 341 9.254133 CAAGATTGTTCATCATCTAATCGTAGT 57.746 33.333 0.00 0.00 33.75 2.73
315 345 7.511959 TGTTCATCATCTAATCGTAGTAGCT 57.488 36.000 0.00 0.00 0.00 3.32
316 346 8.617290 TGTTCATCATCTAATCGTAGTAGCTA 57.383 34.615 0.00 0.00 0.00 3.32
342 376 3.056891 CGAGACAAGAGAAAGGAAGAGCT 60.057 47.826 0.00 0.00 0.00 4.09
344 378 5.336055 CGAGACAAGAGAAAGGAAGAGCTAA 60.336 44.000 0.00 0.00 0.00 3.09
363 400 2.345991 GTCTGCCCCACGCTTGTA 59.654 61.111 0.00 0.00 38.78 2.41
373 415 0.742281 CACGCTTGTATGAGCTGCCT 60.742 55.000 0.00 0.00 40.52 4.75
390 432 6.000219 AGCTGCCTCGAAACATAATCATATT 59.000 36.000 0.00 0.00 0.00 1.28
391 433 6.148480 AGCTGCCTCGAAACATAATCATATTC 59.852 38.462 0.00 0.00 0.00 1.75
392 434 6.466308 TGCCTCGAAACATAATCATATTCG 57.534 37.500 0.00 0.00 42.97 3.34
393 435 6.220201 TGCCTCGAAACATAATCATATTCGA 58.780 36.000 8.39 8.39 46.53 3.71
414 456 6.042777 TCGATAATACTCCTGTGAAGCAAAG 58.957 40.000 0.00 0.00 0.00 2.77
418 460 2.576615 ACTCCTGTGAAGCAAAGGAAC 58.423 47.619 7.68 0.00 46.09 3.62
442 484 5.195940 CCTTTAAAGAAGGGCAGATGATGA 58.804 41.667 16.98 0.00 33.79 2.92
446 488 3.278668 AGAAGGGCAGATGATGAGTTG 57.721 47.619 0.00 0.00 0.00 3.16
447 489 2.575279 AGAAGGGCAGATGATGAGTTGT 59.425 45.455 0.00 0.00 0.00 3.32
448 490 3.776969 AGAAGGGCAGATGATGAGTTGTA 59.223 43.478 0.00 0.00 0.00 2.41
449 491 3.550437 AGGGCAGATGATGAGTTGTAC 57.450 47.619 0.00 0.00 0.00 2.90
476 2063 4.278419 AGTTGTAACCACATTCTCTTTGCC 59.722 41.667 0.00 0.00 33.76 4.52
487 2074 0.102120 CTCTTTGCCGGTTGTTGCAA 59.898 50.000 1.90 0.00 45.12 4.08
510 2114 1.665679 ACAATTGTGATCGATCGTGCC 59.334 47.619 20.03 8.74 0.00 5.01
548 2152 6.553953 TGTGGCAGAACTATTTACCATCTA 57.446 37.500 0.00 0.00 0.00 1.98
609 2213 4.090090 TGTTGTCACAGGAAAGGGAAAAA 58.910 39.130 0.00 0.00 0.00 1.94
637 2241 3.883180 GTGTGCCACGGTTGCGTT 61.883 61.111 0.00 0.00 0.00 4.84
659 2263 4.803426 GAGCTGCGACCCGGAGTG 62.803 72.222 0.73 0.00 46.53 3.51
662 2266 3.066190 CTGCGACCCGGAGTGGTA 61.066 66.667 0.73 0.00 40.30 3.25
663 2267 2.601067 TGCGACCCGGAGTGGTAA 60.601 61.111 0.73 0.00 39.24 2.85
690 2294 1.338973 ACATGTGTGAAGCAGCCAAAG 59.661 47.619 0.00 0.00 0.00 2.77
720 2324 0.037046 CCCTTTTGCCACATCAAGCC 60.037 55.000 0.00 0.00 0.00 4.35
722 2326 0.314935 CTTTTGCCACATCAAGCCGT 59.685 50.000 0.00 0.00 0.00 5.68
723 2327 1.539388 CTTTTGCCACATCAAGCCGTA 59.461 47.619 0.00 0.00 0.00 4.02
724 2328 1.610363 TTTGCCACATCAAGCCGTAA 58.390 45.000 0.00 0.00 0.00 3.18
725 2329 1.610363 TTGCCACATCAAGCCGTAAA 58.390 45.000 0.00 0.00 0.00 2.01
727 2331 1.268352 TGCCACATCAAGCCGTAAAAC 59.732 47.619 0.00 0.00 0.00 2.43
728 2332 1.268352 GCCACATCAAGCCGTAAAACA 59.732 47.619 0.00 0.00 0.00 2.83
729 2333 2.094752 GCCACATCAAGCCGTAAAACAT 60.095 45.455 0.00 0.00 0.00 2.71
732 2336 3.913763 CACATCAAGCCGTAAAACATGTG 59.086 43.478 0.00 0.00 35.19 3.21
733 2337 3.568007 ACATCAAGCCGTAAAACATGTGT 59.432 39.130 0.00 0.00 0.00 3.72
734 2338 3.617540 TCAAGCCGTAAAACATGTGTG 57.382 42.857 0.00 0.00 0.00 3.82
735 2339 2.946329 TCAAGCCGTAAAACATGTGTGT 59.054 40.909 0.00 0.00 41.28 3.72
736 2340 4.127907 TCAAGCCGTAAAACATGTGTGTA 58.872 39.130 0.00 0.00 37.67 2.90
746 3749 5.860941 AAACATGTGTGTAAACCATTCCA 57.139 34.783 0.00 0.00 37.67 3.53
748 3751 7.531857 AAACATGTGTGTAAACCATTCCATA 57.468 32.000 0.00 0.00 37.67 2.74
759 3762 4.705110 ACCATTCCATACATTCATCCGA 57.295 40.909 0.00 0.00 0.00 4.55
763 3766 5.279960 CCATTCCATACATTCATCCGACCTA 60.280 44.000 0.00 0.00 0.00 3.08
764 3767 5.468540 TTCCATACATTCATCCGACCTAG 57.531 43.478 0.00 0.00 0.00 3.02
765 3768 3.832490 TCCATACATTCATCCGACCTAGG 59.168 47.826 7.41 7.41 0.00 3.02
766 3769 3.055819 CCATACATTCATCCGACCTAGGG 60.056 52.174 14.81 0.00 0.00 3.53
768 3771 0.035458 CATTCATCCGACCTAGGGGC 59.965 60.000 14.81 3.61 35.63 5.80
770 3773 2.122813 CATCCGACCTAGGGGCCT 60.123 66.667 14.81 0.00 35.63 5.19
771 3774 2.201771 ATCCGACCTAGGGGCCTC 59.798 66.667 14.81 0.00 35.63 4.70
874 3881 4.344865 GCAGCCGGAACCTGGGAA 62.345 66.667 5.05 0.00 0.00 3.97
889 3896 2.480555 GAACGCGCCCAATGTCAG 59.519 61.111 5.73 0.00 0.00 3.51
890 3897 3.039202 GAACGCGCCCAATGTCAGG 62.039 63.158 5.73 0.00 0.00 3.86
1081 4110 1.203994 CGCCCTATATAACCACCTCCG 59.796 57.143 0.00 0.00 0.00 4.63
1082 4111 1.066358 GCCCTATATAACCACCTCCGC 60.066 57.143 0.00 0.00 0.00 5.54
1137 4166 1.376466 CTGCTGCTACCACCCAACT 59.624 57.895 0.00 0.00 0.00 3.16
1214 4244 1.654954 CGTCCGTCCATCCGTCTTCT 61.655 60.000 0.00 0.00 0.00 2.85
1215 4245 0.100861 GTCCGTCCATCCGTCTTCTC 59.899 60.000 0.00 0.00 0.00 2.87
1217 4247 1.320344 CCGTCCATCCGTCTTCTCCA 61.320 60.000 0.00 0.00 0.00 3.86
1218 4248 0.530744 CGTCCATCCGTCTTCTCCAA 59.469 55.000 0.00 0.00 0.00 3.53
1219 4249 1.469940 CGTCCATCCGTCTTCTCCAAG 60.470 57.143 0.00 0.00 0.00 3.61
1220 4250 1.134670 GTCCATCCGTCTTCTCCAAGG 60.135 57.143 0.00 0.00 0.00 3.61
1221 4251 0.905357 CCATCCGTCTTCTCCAAGGT 59.095 55.000 0.00 0.00 0.00 3.50
1222 4252 1.134670 CCATCCGTCTTCTCCAAGGTC 60.135 57.143 0.00 0.00 0.00 3.85
1223 4253 0.818296 ATCCGTCTTCTCCAAGGTCG 59.182 55.000 0.00 0.00 0.00 4.79
1224 4254 1.215647 CCGTCTTCTCCAAGGTCGG 59.784 63.158 0.00 0.00 39.35 4.79
1225 4255 1.533469 CCGTCTTCTCCAAGGTCGGT 61.533 60.000 0.00 0.00 39.94 4.69
1226 4256 0.109226 CGTCTTCTCCAAGGTCGGTC 60.109 60.000 0.00 0.00 0.00 4.79
1227 4257 1.258676 GTCTTCTCCAAGGTCGGTCT 58.741 55.000 0.00 0.00 0.00 3.85
1228 4258 1.202817 GTCTTCTCCAAGGTCGGTCTC 59.797 57.143 0.00 0.00 0.00 3.36
1229 4259 0.533032 CTTCTCCAAGGTCGGTCTCC 59.467 60.000 0.00 0.00 0.00 3.71
1230 4260 0.114560 TTCTCCAAGGTCGGTCTCCT 59.885 55.000 0.00 0.00 36.81 3.69
1231 4261 0.997363 TCTCCAAGGTCGGTCTCCTA 59.003 55.000 0.00 0.00 34.56 2.94
1232 4262 1.569548 TCTCCAAGGTCGGTCTCCTAT 59.430 52.381 0.00 0.00 34.56 2.57
1233 4263 1.957877 CTCCAAGGTCGGTCTCCTATC 59.042 57.143 0.00 0.00 34.56 2.08
1234 4264 1.041437 CCAAGGTCGGTCTCCTATCC 58.959 60.000 0.00 0.00 34.56 2.59
1235 4265 0.669077 CAAGGTCGGTCTCCTATCCG 59.331 60.000 0.00 0.00 46.93 4.18
1236 4266 0.258194 AAGGTCGGTCTCCTATCCGT 59.742 55.000 3.64 0.00 45.88 4.69
1237 4267 0.258194 AGGTCGGTCTCCTATCCGTT 59.742 55.000 3.64 0.00 45.88 4.44
1238 4268 1.109609 GGTCGGTCTCCTATCCGTTT 58.890 55.000 3.64 0.00 45.88 3.60
1239 4269 1.066757 GGTCGGTCTCCTATCCGTTTC 59.933 57.143 3.64 0.00 45.88 2.78
1240 4270 1.066757 GTCGGTCTCCTATCCGTTTCC 59.933 57.143 3.64 0.00 45.88 3.13
1241 4271 1.064166 TCGGTCTCCTATCCGTTTCCT 60.064 52.381 3.64 0.00 45.88 3.36
1242 4272 1.337387 CGGTCTCCTATCCGTTTCCTC 59.663 57.143 0.00 0.00 41.58 3.71
1243 4273 1.687660 GGTCTCCTATCCGTTTCCTCC 59.312 57.143 0.00 0.00 0.00 4.30
1244 4274 1.687660 GTCTCCTATCCGTTTCCTCCC 59.312 57.143 0.00 0.00 0.00 4.30
1271 4301 3.119792 GCGCCTCTATTATTTTCTCGTCG 59.880 47.826 0.00 0.00 0.00 5.12
1273 4303 3.429207 GCCTCTATTATTTTCTCGTCGGC 59.571 47.826 0.00 0.00 0.00 5.54
1274 4304 4.796618 GCCTCTATTATTTTCTCGTCGGCT 60.797 45.833 0.00 0.00 0.00 5.52
1281 4311 1.155424 TTTCTCGTCGGCTGCGTTTT 61.155 50.000 8.78 0.00 0.00 2.43
1286 4316 3.948719 TCGGCTGCGTTTTCCCCT 61.949 61.111 0.00 0.00 0.00 4.79
1766 4806 3.304928 GCTTCAGGTGACCACAATTTCTG 60.305 47.826 3.63 0.00 0.00 3.02
1773 4813 4.304110 GTGACCACAATTTCTGTCTCGTA 58.696 43.478 0.00 0.00 35.47 3.43
1780 4820 7.122353 ACCACAATTTCTGTCTCGTACTACTAT 59.878 37.037 0.00 0.00 35.47 2.12
1805 4845 3.308438 ACCAGTTACAATTACGCTCGT 57.692 42.857 0.00 0.00 0.00 4.18
1829 4951 1.345415 GGAAACGTAAGGGACCAGTCA 59.655 52.381 0.00 0.00 46.39 3.41
1830 4952 2.410939 GAAACGTAAGGGACCAGTCAC 58.589 52.381 0.00 0.00 46.39 3.67
1835 4957 1.002087 GTAAGGGACCAGTCACCAGTG 59.998 57.143 0.00 0.00 32.15 3.66
1837 4959 0.190069 AGGGACCAGTCACCAGTGTA 59.810 55.000 0.00 0.00 32.15 2.90
1862 4987 1.154469 GAACGCGGCACTGCTTTAC 60.154 57.895 12.47 0.00 0.00 2.01
1864 4989 1.841663 AACGCGGCACTGCTTTACTG 61.842 55.000 12.47 0.00 0.00 2.74
1866 4991 2.870372 CGGCACTGCTTTACTGGC 59.130 61.111 0.00 0.00 0.00 4.85
1867 4992 1.672356 CGGCACTGCTTTACTGGCT 60.672 57.895 0.00 0.00 0.00 4.75
1868 4993 1.639298 CGGCACTGCTTTACTGGCTC 61.639 60.000 0.00 0.00 0.00 4.70
1869 4994 1.308783 GGCACTGCTTTACTGGCTCC 61.309 60.000 0.00 0.00 0.00 4.70
1870 4995 0.606401 GCACTGCTTTACTGGCTCCA 60.606 55.000 0.00 0.00 0.00 3.86
1872 4997 2.440409 CACTGCTTTACTGGCTCCAAT 58.560 47.619 0.00 0.00 0.00 3.16
1908 5034 3.387962 ACCTCTGCTTCCTGATTGGATA 58.612 45.455 0.00 0.00 45.68 2.59
1916 5042 5.221722 TGCTTCCTGATTGGATACCTCATAC 60.222 44.000 0.00 0.00 45.68 2.39
1919 5045 7.451731 TTCCTGATTGGATACCTCATACTTT 57.548 36.000 0.00 0.00 45.68 2.66
1920 5046 7.451731 TCCTGATTGGATACCTCATACTTTT 57.548 36.000 0.00 0.00 40.56 2.27
1943 5072 2.693074 ACCCTTGTTTGGATGTGTTGAC 59.307 45.455 0.00 0.00 0.00 3.18
1950 5079 4.024133 TGTTTGGATGTGTTGACTTGATCG 60.024 41.667 0.00 0.00 0.00 3.69
1953 5082 3.244044 TGGATGTGTTGACTTGATCGTCA 60.244 43.478 0.00 0.00 41.82 4.35
1958 5087 4.051922 GTGTTGACTTGATCGTCAGTTCT 58.948 43.478 4.03 0.00 44.02 3.01
1960 5089 4.745125 TGTTGACTTGATCGTCAGTTCTTC 59.255 41.667 4.03 0.00 44.02 2.87
1961 5090 4.584327 TGACTTGATCGTCAGTTCTTCA 57.416 40.909 0.00 0.00 38.89 3.02
1962 5091 4.944048 TGACTTGATCGTCAGTTCTTCAA 58.056 39.130 0.00 0.00 38.89 2.69
1963 5092 5.541845 TGACTTGATCGTCAGTTCTTCAAT 58.458 37.500 0.00 0.00 38.89 2.57
1964 5093 5.635280 TGACTTGATCGTCAGTTCTTCAATC 59.365 40.000 0.00 0.00 38.89 2.67
1965 5094 5.788450 ACTTGATCGTCAGTTCTTCAATCT 58.212 37.500 0.00 0.00 0.00 2.40
1966 5095 5.636965 ACTTGATCGTCAGTTCTTCAATCTG 59.363 40.000 0.00 0.00 0.00 2.90
1969 5098 4.179926 TCGTCAGTTCTTCAATCTGAGG 57.820 45.455 0.00 0.00 42.00 3.86
1970 5099 3.826729 TCGTCAGTTCTTCAATCTGAGGA 59.173 43.478 11.07 11.07 44.80 3.71
1971 5100 4.082517 TCGTCAGTTCTTCAATCTGAGGAG 60.083 45.833 11.07 0.99 43.34 3.69
1972 5101 3.932089 GTCAGTTCTTCAATCTGAGGAGC 59.068 47.826 0.00 0.00 38.60 4.70
1973 5102 3.837146 TCAGTTCTTCAATCTGAGGAGCT 59.163 43.478 0.00 0.00 42.87 4.09
1974 5103 4.285517 TCAGTTCTTCAATCTGAGGAGCTT 59.714 41.667 2.99 0.00 40.14 3.74
1975 5104 5.481824 TCAGTTCTTCAATCTGAGGAGCTTA 59.518 40.000 2.99 0.00 40.14 3.09
1976 5105 6.155910 TCAGTTCTTCAATCTGAGGAGCTTAT 59.844 38.462 2.99 0.00 40.14 1.73
1977 5106 6.479660 CAGTTCTTCAATCTGAGGAGCTTATC 59.520 42.308 2.99 0.00 40.14 1.75
1978 5107 6.407979 AGTTCTTCAATCTGAGGAGCTTATCC 60.408 42.308 0.28 0.00 40.14 2.59
1986 5115 3.688553 GGAGCTTATCCCGTTCCTG 57.311 57.895 0.00 0.00 43.01 3.86
1987 5116 0.106894 GGAGCTTATCCCGTTCCTGG 59.893 60.000 0.00 0.00 43.01 4.45
1988 5117 0.831307 GAGCTTATCCCGTTCCTGGT 59.169 55.000 0.00 0.00 0.00 4.00
1989 5118 0.541863 AGCTTATCCCGTTCCTGGTG 59.458 55.000 0.00 0.00 0.00 4.17
1990 5119 0.252197 GCTTATCCCGTTCCTGGTGT 59.748 55.000 0.00 0.00 0.00 4.16
1991 5120 2.012051 GCTTATCCCGTTCCTGGTGTG 61.012 57.143 0.00 0.00 0.00 3.82
1992 5121 1.278127 CTTATCCCGTTCCTGGTGTGT 59.722 52.381 0.00 0.00 0.00 3.72
1993 5122 2.234896 TATCCCGTTCCTGGTGTGTA 57.765 50.000 0.00 0.00 0.00 2.90
1994 5123 0.902531 ATCCCGTTCCTGGTGTGTAG 59.097 55.000 0.00 0.00 0.00 2.74
1995 5124 0.178955 TCCCGTTCCTGGTGTGTAGA 60.179 55.000 0.00 0.00 0.00 2.59
1996 5125 0.682852 CCCGTTCCTGGTGTGTAGAA 59.317 55.000 0.00 0.00 0.00 2.10
1997 5126 1.337823 CCCGTTCCTGGTGTGTAGAAG 60.338 57.143 0.00 0.00 0.00 2.85
1998 5127 1.429463 CGTTCCTGGTGTGTAGAAGC 58.571 55.000 0.00 0.00 0.00 3.86
1999 5128 1.429463 GTTCCTGGTGTGTAGAAGCG 58.571 55.000 0.00 0.00 0.00 4.68
2000 5129 0.320374 TTCCTGGTGTGTAGAAGCGG 59.680 55.000 0.00 0.00 0.00 5.52
2001 5130 1.079127 CCTGGTGTGTAGAAGCGGG 60.079 63.158 0.00 0.00 35.36 6.13
2002 5131 1.741770 CTGGTGTGTAGAAGCGGGC 60.742 63.158 0.00 0.00 0.00 6.13
2003 5132 2.436115 GGTGTGTAGAAGCGGGCC 60.436 66.667 0.00 0.00 0.00 5.80
2004 5133 2.345991 GTGTGTAGAAGCGGGCCA 59.654 61.111 4.39 0.00 0.00 5.36
2005 5134 1.741770 GTGTGTAGAAGCGGGCCAG 60.742 63.158 4.39 0.00 0.00 4.85
2006 5135 2.820037 GTGTAGAAGCGGGCCAGC 60.820 66.667 21.36 21.36 37.41 4.85
2013 5142 3.244616 AGCGGGCCAGCTTATCAT 58.755 55.556 25.87 1.14 46.80 2.45
2014 5143 1.228063 AGCGGGCCAGCTTATCATG 60.228 57.895 25.87 0.00 46.80 3.07
2015 5144 1.526917 GCGGGCCAGCTTATCATGT 60.527 57.895 21.61 0.00 0.00 3.21
2016 5145 1.103398 GCGGGCCAGCTTATCATGTT 61.103 55.000 21.61 0.00 0.00 2.71
2017 5146 0.947244 CGGGCCAGCTTATCATGTTC 59.053 55.000 4.39 0.00 0.00 3.18
2018 5147 1.475751 CGGGCCAGCTTATCATGTTCT 60.476 52.381 4.39 0.00 0.00 3.01
2019 5148 2.224281 CGGGCCAGCTTATCATGTTCTA 60.224 50.000 4.39 0.00 0.00 2.10
2020 5149 3.406764 GGGCCAGCTTATCATGTTCTAG 58.593 50.000 4.39 0.00 0.00 2.43
2021 5150 3.406764 GGCCAGCTTATCATGTTCTAGG 58.593 50.000 0.00 0.00 0.00 3.02
2022 5151 3.071602 GGCCAGCTTATCATGTTCTAGGA 59.928 47.826 0.00 0.00 0.00 2.94
2023 5152 4.263243 GGCCAGCTTATCATGTTCTAGGAT 60.263 45.833 0.00 0.00 33.72 3.24
2024 5153 4.694509 GCCAGCTTATCATGTTCTAGGATG 59.305 45.833 0.00 0.00 31.27 3.51
2025 5154 5.744300 GCCAGCTTATCATGTTCTAGGATGT 60.744 44.000 0.00 0.00 31.27 3.06
2026 5155 5.699915 CCAGCTTATCATGTTCTAGGATGTG 59.300 44.000 0.00 0.00 31.27 3.21
2027 5156 6.286758 CAGCTTATCATGTTCTAGGATGTGT 58.713 40.000 0.00 0.00 31.27 3.72
2028 5157 6.765036 CAGCTTATCATGTTCTAGGATGTGTT 59.235 38.462 0.00 0.00 31.27 3.32
2029 5158 6.765036 AGCTTATCATGTTCTAGGATGTGTTG 59.235 38.462 0.00 0.00 31.27 3.33
2030 5159 6.763135 GCTTATCATGTTCTAGGATGTGTTGA 59.237 38.462 0.00 0.00 31.27 3.18
2031 5160 7.443575 GCTTATCATGTTCTAGGATGTGTTGAT 59.556 37.037 0.00 0.00 31.27 2.57
2032 5161 9.334947 CTTATCATGTTCTAGGATGTGTTGATT 57.665 33.333 0.00 0.00 31.27 2.57
2033 5162 9.685276 TTATCATGTTCTAGGATGTGTTGATTT 57.315 29.630 0.00 0.00 31.27 2.17
2034 5163 7.381766 TCATGTTCTAGGATGTGTTGATTTG 57.618 36.000 0.00 0.00 0.00 2.32
2035 5164 7.167535 TCATGTTCTAGGATGTGTTGATTTGA 58.832 34.615 0.00 0.00 0.00 2.69
2036 5165 7.830697 TCATGTTCTAGGATGTGTTGATTTGAT 59.169 33.333 0.00 0.00 0.00 2.57
2037 5166 8.464404 CATGTTCTAGGATGTGTTGATTTGATT 58.536 33.333 0.00 0.00 0.00 2.57
2038 5167 9.685276 ATGTTCTAGGATGTGTTGATTTGATTA 57.315 29.630 0.00 0.00 0.00 1.75
2039 5168 8.946085 TGTTCTAGGATGTGTTGATTTGATTAC 58.054 33.333 0.00 0.00 0.00 1.89
2040 5169 8.398665 GTTCTAGGATGTGTTGATTTGATTACC 58.601 37.037 0.00 0.00 0.00 2.85
2041 5170 7.861629 TCTAGGATGTGTTGATTTGATTACCT 58.138 34.615 0.00 0.00 0.00 3.08
2042 5171 6.764308 AGGATGTGTTGATTTGATTACCTG 57.236 37.500 0.00 0.00 0.00 4.00
2043 5172 6.248433 AGGATGTGTTGATTTGATTACCTGT 58.752 36.000 0.00 0.00 0.00 4.00
2044 5173 6.721208 AGGATGTGTTGATTTGATTACCTGTT 59.279 34.615 0.00 0.00 0.00 3.16
2045 5174 7.233348 AGGATGTGTTGATTTGATTACCTGTTT 59.767 33.333 0.00 0.00 0.00 2.83
2046 5175 8.519526 GGATGTGTTGATTTGATTACCTGTTTA 58.480 33.333 0.00 0.00 0.00 2.01
2049 5178 9.689976 TGTGTTGATTTGATTACCTGTTTATTG 57.310 29.630 0.00 0.00 0.00 1.90
2050 5179 9.691362 GTGTTGATTTGATTACCTGTTTATTGT 57.309 29.630 0.00 0.00 0.00 2.71
2051 5180 9.689976 TGTTGATTTGATTACCTGTTTATTGTG 57.310 29.630 0.00 0.00 0.00 3.33
2052 5181 9.139174 GTTGATTTGATTACCTGTTTATTGTGG 57.861 33.333 0.00 0.00 0.00 4.17
2082 5211 5.338463 GGACCACCTTATTCTGTTCTAGCTT 60.338 44.000 0.00 0.00 0.00 3.74
2188 5317 2.683362 GGCTGGGTGTTTATGCTTAGTC 59.317 50.000 0.00 0.00 0.00 2.59
2189 5318 2.683362 GCTGGGTGTTTATGCTTAGTCC 59.317 50.000 0.00 0.00 0.00 3.85
2240 6165 5.385198 AGTCCTGCCAACTCAAGAAATTAA 58.615 37.500 0.00 0.00 0.00 1.40
2246 6171 7.202016 TGCCAACTCAAGAAATTAACAGTAG 57.798 36.000 0.00 0.00 0.00 2.57
2264 6241 6.088016 CAGTAGAGCTGCTCTTTGATATCT 57.912 41.667 34.42 18.12 41.50 1.98
2276 6253 7.012704 TGCTCTTTGATATCTGAAGTAATTGGC 59.987 37.037 14.80 11.80 0.00 4.52
2281 6258 2.472695 TCTGAAGTAATTGGCACGCT 57.527 45.000 0.00 0.00 0.00 5.07
2288 6265 2.420022 AGTAATTGGCACGCTGCTAAAG 59.580 45.455 11.39 0.00 46.60 1.85
2319 6296 6.720112 ATGCATATTGTGAGTTTGGCTTAT 57.280 33.333 0.00 0.00 0.00 1.73
2359 7608 8.596781 AGTATTGGATACTACTAGGCCTTATG 57.403 38.462 12.58 4.32 43.93 1.90
2368 7617 7.056844 ACTACTAGGCCTTATGACTCATTTC 57.943 40.000 12.58 0.00 0.00 2.17
2394 7643 4.411256 TGACGGGTCAAACTCTTTAAGT 57.589 40.909 0.00 0.00 36.53 2.24
2422 7671 5.772393 ATAACTGTTAACCATCTGTCCCA 57.228 39.130 4.11 0.00 0.00 4.37
2490 7741 1.633432 TGTTAGGGTTGGACCATCCTG 59.367 52.381 21.02 0.00 41.02 3.86
2602 7859 2.293170 TCTTTGTCACGTGCCATTTCA 58.707 42.857 11.67 0.29 0.00 2.69
2650 7908 4.675510 CAAGGTTATCATCACCATGTTGC 58.324 43.478 0.00 0.00 36.67 4.17
2666 7924 2.031245 TGTTGCCTAATTTGACTGTGCG 60.031 45.455 0.00 0.00 0.00 5.34
2683 7941 2.888594 TGCGAAAGGACATAGTAGTGC 58.111 47.619 0.00 0.00 0.00 4.40
2728 7986 6.566079 ACCATTGACTTTCAGATCCTATGA 57.434 37.500 0.00 0.00 0.00 2.15
2742 8000 1.006832 CTATGAAACAACGGGGAGCG 58.993 55.000 0.00 0.00 0.00 5.03
2757 8015 3.383825 GGGGAGCGAACTTGAGAGTTATA 59.616 47.826 0.00 0.00 45.88 0.98
2778 8036 9.053840 GTTATAAGCCACTAACCCTTTATCTTC 57.946 37.037 0.00 0.00 0.00 2.87
2816 8074 1.467920 AATTGCTGAACAGGCTAGCC 58.532 50.000 27.19 27.19 36.64 3.93
2819 8077 0.329261 TGCTGAACAGGCTAGCCATT 59.671 50.000 34.70 26.93 38.92 3.16
2826 8084 4.218417 TGAACAGGCTAGCCATTTTCTTTC 59.782 41.667 34.70 22.31 38.92 2.62
2827 8085 2.749621 ACAGGCTAGCCATTTTCTTTCG 59.250 45.455 34.70 11.81 38.92 3.46
2833 8091 4.154195 GCTAGCCATTTTCTTTCGAACTGA 59.846 41.667 2.29 0.00 0.00 3.41
2847 8105 3.559655 TCGAACTGAAACTGTTCACATGG 59.440 43.478 16.90 5.32 40.61 3.66
2890 8149 0.608856 CCACAGCTGGCCATGTTACA 60.609 55.000 19.93 0.00 0.00 2.41
2914 8173 4.826274 ATCCTAGTTTGTGCTGAGCTTA 57.174 40.909 5.83 0.00 0.00 3.09
2983 8243 4.836125 ATATTATTGCTTTGGAGGCACG 57.164 40.909 0.00 0.00 39.55 5.34
2994 8254 3.579626 GAGGCACGCAACTTGTCGC 62.580 63.158 5.77 0.00 0.00 5.19
3012 8275 2.351418 TCGCTACGAAAATGATTGCCTG 59.649 45.455 0.00 0.00 31.06 4.85
3147 8411 3.005791 GGCAGGTTGACTTTTAGCATTGT 59.994 43.478 0.00 0.00 0.00 2.71
3279 8544 6.036470 CGAGCTTTTAAAGAATTGGGGAATC 58.964 40.000 9.10 0.00 0.00 2.52
3404 9275 7.572759 TGACTTCTTGAGTAAATTAAACTGCG 58.427 34.615 0.00 0.00 39.19 5.18
3439 9310 1.202879 TCCAAGCTGAACCATTTCCGT 60.203 47.619 0.00 0.00 0.00 4.69
3445 9316 3.132111 AGCTGAACCATTTCCGTGTTTTT 59.868 39.130 0.00 0.00 0.00 1.94
3450 9321 4.301637 ACCATTTCCGTGTTTTTGACTC 57.698 40.909 0.00 0.00 0.00 3.36
3456 9327 7.749126 CCATTTCCGTGTTTTTGACTCTTATAC 59.251 37.037 0.00 0.00 0.00 1.47
3522 9393 9.381038 TCAGTAAATATATGGAGAAAGCTACCT 57.619 33.333 0.00 0.00 0.00 3.08
3532 9403 7.966339 TGGAGAAAGCTACCTTACATACTAA 57.034 36.000 0.00 0.00 0.00 2.24
3587 9458 3.887352 TGCACCAACACCAAGTACTTAA 58.113 40.909 8.04 0.00 0.00 1.85
3670 9541 3.706802 TGATTGCGTTTGTGTGACATT 57.293 38.095 0.00 0.00 0.00 2.71
3672 9543 2.483583 TTGCGTTTGTGTGACATTCC 57.516 45.000 0.00 0.00 0.00 3.01
3673 9544 1.674359 TGCGTTTGTGTGACATTCCT 58.326 45.000 0.00 0.00 0.00 3.36
3674 9545 2.839975 TGCGTTTGTGTGACATTCCTA 58.160 42.857 0.00 0.00 0.00 2.94
3676 9547 3.435327 TGCGTTTGTGTGACATTCCTATC 59.565 43.478 0.00 0.00 0.00 2.08
3678 9549 4.154195 GCGTTTGTGTGACATTCCTATCTT 59.846 41.667 0.00 0.00 0.00 2.40
3682 9553 8.286800 CGTTTGTGTGACATTCCTATCTTAAAA 58.713 33.333 0.00 0.00 0.00 1.52
3685 9556 6.884295 TGTGTGACATTCCTATCTTAAAAGGG 59.116 38.462 0.00 0.00 33.40 3.95
3689 9560 7.065923 GTGACATTCCTATCTTAAAAGGGTGAC 59.934 40.741 0.00 0.00 33.40 3.67
3706 9577 3.118738 GGTGACAGTACTACCCATTCCAG 60.119 52.174 0.00 0.00 0.00 3.86
3783 9662 3.158676 GTGGCTGGGGTGTTACAATTTA 58.841 45.455 0.00 0.00 0.00 1.40
3789 9668 5.011982 TGGGGTGTTACAATTTATCCCAA 57.988 39.130 8.42 0.00 39.91 4.12
3842 10101 4.882671 ACACGTTTGGATGCAGAATATC 57.117 40.909 0.00 0.00 0.00 1.63
3858 10117 6.549952 CAGAATATCCTGCTGAAACTTGAAC 58.450 40.000 0.00 0.00 0.00 3.18
3882 10141 5.163540 CCTGTAATATAGCGATCCCTGTACC 60.164 48.000 0.00 0.00 0.00 3.34
3971 10245 2.918131 GCAATCACCGTCTGAAGTTTGC 60.918 50.000 0.00 0.00 36.00 3.68
3985 10259 1.753073 AGTTTGCCATGAGCCTATTGC 59.247 47.619 0.00 0.00 42.71 3.56
4178 10452 5.010708 TGGGTAGCTGATCATATAGTGGA 57.989 43.478 0.00 0.00 0.00 4.02
4193 10467 8.255206 TCATATAGTGGACAAACTCACGTTATT 58.745 33.333 0.00 0.00 38.77 1.40
4210 10489 5.459107 ACGTTATTCGCAGTGATTCACTATC 59.541 40.000 18.59 12.32 42.31 2.08
4215 10494 5.035784 TCGCAGTGATTCACTATCTATCG 57.964 43.478 18.59 13.98 43.43 2.92
4216 10495 4.083271 TCGCAGTGATTCACTATCTATCGG 60.083 45.833 18.59 5.69 43.43 4.18
4240 10519 9.787532 CGGTTGATATGTAATGTTTGATTTTCT 57.212 29.630 0.00 0.00 0.00 2.52
4278 10557 2.828520 CTGAGACAGTACAGTGGGTCAT 59.171 50.000 0.00 0.00 32.79 3.06
4280 10559 3.762288 TGAGACAGTACAGTGGGTCATAC 59.238 47.826 0.00 0.00 32.79 2.39
4284 10563 5.307196 AGACAGTACAGTGGGTCATACTTTT 59.693 40.000 0.00 0.00 32.79 2.27
4286 10565 7.015877 AGACAGTACAGTGGGTCATACTTTTAA 59.984 37.037 0.00 0.00 32.79 1.52
4287 10566 6.932960 ACAGTACAGTGGGTCATACTTTTAAC 59.067 38.462 0.00 0.00 0.00 2.01
4289 10568 7.331193 CAGTACAGTGGGTCATACTTTTAACTC 59.669 40.741 0.00 0.00 0.00 3.01
4291 10570 6.838382 ACAGTGGGTCATACTTTTAACTCTT 58.162 36.000 0.00 0.00 0.00 2.85
4292 10571 7.287810 ACAGTGGGTCATACTTTTAACTCTTT 58.712 34.615 0.00 0.00 0.00 2.52
4293 10572 7.228706 ACAGTGGGTCATACTTTTAACTCTTTG 59.771 37.037 0.00 0.00 0.00 2.77
4294 10573 6.715264 AGTGGGTCATACTTTTAACTCTTTGG 59.285 38.462 0.00 0.00 0.00 3.28
4415 10983 3.045601 CCGATGGGCTATAGTTGAAGG 57.954 52.381 0.84 0.00 0.00 3.46
4494 11062 7.336396 TCAGCCATCTATTGATTGATAGGATG 58.664 38.462 11.66 11.66 33.20 3.51
4685 11306 2.231964 TGGCTTGCATTTCATCAACTCC 59.768 45.455 0.00 0.00 0.00 3.85
4892 11516 2.048222 TTCAAGCTCACCCGCTCG 60.048 61.111 0.00 0.00 39.86 5.03
5426 12050 3.959991 GACCAAGGACGGCAGCCTC 62.960 68.421 10.54 6.11 33.76 4.70
5769 12393 2.296752 CTGTTCATTGTGCCATTGACCA 59.703 45.455 0.97 0.58 0.00 4.02
5889 12513 2.814269 ACAGATGCTACATACACGCTG 58.186 47.619 0.00 0.00 0.00 5.18
5890 12514 2.427095 ACAGATGCTACATACACGCTGA 59.573 45.455 0.00 0.00 31.08 4.26
5891 12515 3.048501 CAGATGCTACATACACGCTGAG 58.951 50.000 0.00 0.00 0.00 3.35
5892 12516 1.789464 GATGCTACATACACGCTGAGC 59.211 52.381 0.00 0.00 0.00 4.26
5893 12517 0.817654 TGCTACATACACGCTGAGCT 59.182 50.000 1.78 0.00 0.00 4.09
5935 12559 2.487428 CGTGGGAGACGCTCTGAG 59.513 66.667 0.00 0.00 42.21 3.35
5936 12560 2.888863 GTGGGAGACGCTCTGAGG 59.111 66.667 6.83 0.00 0.00 3.86
5937 12561 2.363018 TGGGAGACGCTCTGAGGG 60.363 66.667 18.89 18.89 0.00 4.30
5938 12562 2.043852 GGGAGACGCTCTGAGGGA 60.044 66.667 26.04 0.00 31.91 4.20
5939 12563 2.124693 GGGAGACGCTCTGAGGGAG 61.125 68.421 26.04 0.00 44.49 4.30
5980 12604 3.161067 CCTACGATCATCTCCATGGACT 58.839 50.000 11.44 0.00 0.00 3.85
6074 12698 7.202047 GGTGACTTCCTTCCTTAGTGATATCAT 60.202 40.741 9.02 1.07 0.00 2.45
6150 12774 1.203364 AGGTGTCAAGAGGACCCTCAT 60.203 52.381 17.50 3.39 46.38 2.90
6281 12905 3.736996 AACAGCAGCAACCCAGCCA 62.737 57.895 0.00 0.00 34.23 4.75
6301 12925 2.954684 CGAAGTGCTACAGGGCCCA 61.955 63.158 27.56 1.18 0.00 5.36
6302 12926 1.378762 GAAGTGCTACAGGGCCCAA 59.621 57.895 27.56 8.08 0.00 4.12
6543 13169 1.760613 CCGAAGCCCATGTACCTCTTA 59.239 52.381 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.612463 ACATATCGTTCCGCTACTCCC 59.388 52.381 0.00 0.00 0.00 4.30
18 19 3.043586 CACACATATCGTTCCGCTACTC 58.956 50.000 0.00 0.00 0.00 2.59
24 25 2.200899 TGATGCACACATATCGTTCCG 58.799 47.619 0.00 0.00 36.35 4.30
25 26 3.544048 CGTTGATGCACACATATCGTTCC 60.544 47.826 0.00 0.00 36.35 3.62
27 28 3.000041 ACGTTGATGCACACATATCGTT 59.000 40.909 0.00 0.00 36.35 3.85
29 30 3.796717 ACTACGTTGATGCACACATATCG 59.203 43.478 3.44 1.72 36.35 2.92
33 34 2.095768 GCAACTACGTTGATGCACACAT 60.096 45.455 22.99 0.00 45.28 3.21
35 36 1.262950 TGCAACTACGTTGATGCACAC 59.737 47.619 25.73 3.80 45.28 3.82
44 45 5.699001 TCATACAAACTCATGCAACTACGTT 59.301 36.000 0.00 0.00 0.00 3.99
50 51 9.624697 TCTTAAATTCATACAAACTCATGCAAC 57.375 29.630 0.00 0.00 0.00 4.17
94 103 8.720562 CGTCTCAAATAATGCAATCCACATATA 58.279 33.333 0.00 0.00 0.00 0.86
95 104 7.229306 ACGTCTCAAATAATGCAATCCACATAT 59.771 33.333 0.00 0.00 0.00 1.78
96 105 6.542005 ACGTCTCAAATAATGCAATCCACATA 59.458 34.615 0.00 0.00 0.00 2.29
99 109 5.030295 CACGTCTCAAATAATGCAATCCAC 58.970 41.667 0.00 0.00 0.00 4.02
118 128 1.662044 GGACACTAACCGGTCACGT 59.338 57.895 8.04 2.53 38.78 4.49
120 130 4.565531 CGGACACTAACCGGTCAC 57.434 61.111 8.04 0.00 45.65 3.67
126 136 2.092882 GCAGACGCGGACACTAACC 61.093 63.158 12.47 0.00 0.00 2.85
129 139 4.111016 CGGCAGACGCGGACACTA 62.111 66.667 12.47 0.00 40.76 2.74
140 150 4.408821 AAATCCAGCGCCGGCAGA 62.409 61.111 28.98 17.34 43.41 4.26
141 151 4.183686 CAAATCCAGCGCCGGCAG 62.184 66.667 28.98 20.12 43.41 4.85
144 154 3.279974 TTTGCAAATCCAGCGCCGG 62.280 57.895 8.05 2.25 33.85 6.13
149 159 1.997606 GCATCACTTTGCAAATCCAGC 59.002 47.619 13.23 9.79 42.31 4.85
150 160 3.192844 AGAGCATCACTTTGCAAATCCAG 59.807 43.478 13.23 3.05 45.23 3.86
152 162 3.863142 AGAGCATCACTTTGCAAATCC 57.137 42.857 13.23 0.00 45.23 3.01
155 165 4.022155 TGCATTAGAGCATCACTTTGCAAA 60.022 37.500 12.14 12.14 45.23 3.68
156 166 3.506844 TGCATTAGAGCATCACTTTGCAA 59.493 39.130 0.00 0.00 45.23 4.08
157 167 3.083293 TGCATTAGAGCATCACTTTGCA 58.917 40.909 0.00 0.00 45.23 4.08
171 199 8.116753 CGTTCTCTAAATTTGGTAGTGCATTAG 58.883 37.037 0.00 0.00 0.00 1.73
205 233 7.376615 CCTAACGTTCTCCTTTTCTTTAGAGA 58.623 38.462 2.82 0.00 33.65 3.10
207 235 5.930569 GCCTAACGTTCTCCTTTTCTTTAGA 59.069 40.000 2.82 0.00 0.00 2.10
208 236 5.163982 CGCCTAACGTTCTCCTTTTCTTTAG 60.164 44.000 2.82 0.00 36.87 1.85
209 237 4.687483 CGCCTAACGTTCTCCTTTTCTTTA 59.313 41.667 2.82 0.00 36.87 1.85
213 241 2.680577 TCGCCTAACGTTCTCCTTTTC 58.319 47.619 2.82 0.00 44.19 2.29
216 244 1.134788 CCATCGCCTAACGTTCTCCTT 60.135 52.381 2.82 0.00 44.19 3.36
217 245 0.460311 CCATCGCCTAACGTTCTCCT 59.540 55.000 2.82 0.00 44.19 3.69
218 246 0.175073 ACCATCGCCTAACGTTCTCC 59.825 55.000 2.82 0.00 44.19 3.71
292 322 8.723311 AGTAGCTACTACGATTAGATGATGAAC 58.277 37.037 24.97 0.00 41.37 3.18
310 340 6.419980 TTTCTCTTGTCTCGTAGTAGCTAC 57.580 41.667 16.43 16.43 33.99 3.58
311 341 5.585445 CCTTTCTCTTGTCTCGTAGTAGCTA 59.415 44.000 0.00 0.00 0.00 3.32
312 342 4.396790 CCTTTCTCTTGTCTCGTAGTAGCT 59.603 45.833 0.00 0.00 0.00 3.32
313 343 4.395542 TCCTTTCTCTTGTCTCGTAGTAGC 59.604 45.833 0.00 0.00 0.00 3.58
315 345 6.236409 TCTTCCTTTCTCTTGTCTCGTAGTA 58.764 40.000 0.00 0.00 0.00 1.82
316 346 5.071370 TCTTCCTTTCTCTTGTCTCGTAGT 58.929 41.667 0.00 0.00 0.00 2.73
323 357 5.175127 CCTTAGCTCTTCCTTTCTCTTGTC 58.825 45.833 0.00 0.00 0.00 3.18
363 400 2.988010 TATGTTTCGAGGCAGCTCAT 57.012 45.000 0.00 0.00 0.00 2.90
390 432 5.592104 TTGCTTCACAGGAGTATTATCGA 57.408 39.130 0.00 0.00 0.00 3.59
391 433 5.235186 CCTTTGCTTCACAGGAGTATTATCG 59.765 44.000 0.00 0.00 33.52 2.92
392 434 6.349300 TCCTTTGCTTCACAGGAGTATTATC 58.651 40.000 0.00 0.00 35.68 1.75
393 435 6.313519 TCCTTTGCTTCACAGGAGTATTAT 57.686 37.500 0.00 0.00 35.68 1.28
394 436 5.755409 TCCTTTGCTTCACAGGAGTATTA 57.245 39.130 0.00 0.00 35.68 0.98
395 437 4.640771 TCCTTTGCTTCACAGGAGTATT 57.359 40.909 0.00 0.00 35.68 1.89
403 445 2.452600 AAGGGTTCCTTTGCTTCACA 57.547 45.000 0.00 0.00 41.69 3.58
436 478 7.330208 GGTTACAACTTACGTACAACTCATCAT 59.670 37.037 0.00 0.00 0.00 2.45
442 484 5.659463 TGTGGTTACAACTTACGTACAACT 58.341 37.500 0.00 0.00 32.88 3.16
446 488 6.865205 AGAGAATGTGGTTACAACTTACGTAC 59.135 38.462 0.00 0.00 40.84 3.67
447 489 6.985117 AGAGAATGTGGTTACAACTTACGTA 58.015 36.000 0.00 0.00 40.84 3.57
448 490 5.850614 AGAGAATGTGGTTACAACTTACGT 58.149 37.500 0.00 0.00 40.84 3.57
449 491 6.780706 AAGAGAATGTGGTTACAACTTACG 57.219 37.500 0.00 0.00 40.84 3.18
468 510 0.102120 TTGCAACAACCGGCAAAGAG 59.898 50.000 0.00 0.00 46.11 2.85
470 512 4.823276 TTGCAACAACCGGCAAAG 57.177 50.000 0.00 0.00 46.11 2.77
476 2063 1.592081 CAATTGTGGTTGCAACAACCG 59.408 47.619 29.81 14.61 43.15 4.44
487 2074 2.672874 CACGATCGATCACAATTGTGGT 59.327 45.455 32.54 28.80 45.65 4.16
510 2114 1.330521 GCCACATGTAGCGTGTAATGG 59.669 52.381 0.00 0.00 31.85 3.16
572 2176 8.280497 CCTGTGACAACAACTACAGTAATAAAC 58.720 37.037 0.00 0.00 39.02 2.01
573 2177 8.205512 TCCTGTGACAACAACTACAGTAATAAA 58.794 33.333 0.00 0.00 39.02 1.40
574 2178 7.728148 TCCTGTGACAACAACTACAGTAATAA 58.272 34.615 0.00 0.00 39.02 1.40
577 2181 5.601583 TCCTGTGACAACAACTACAGTAA 57.398 39.130 0.00 0.00 39.02 2.24
580 2184 4.273480 CCTTTCCTGTGACAACAACTACAG 59.727 45.833 0.00 0.00 40.06 2.74
582 2186 3.564225 CCCTTTCCTGTGACAACAACTAC 59.436 47.826 0.00 0.00 35.37 2.73
585 2189 2.650322 TCCCTTTCCTGTGACAACAAC 58.350 47.619 0.00 0.00 35.37 3.32
587 2191 3.374042 TTTCCCTTTCCTGTGACAACA 57.626 42.857 0.00 0.00 34.34 3.33
656 2260 4.101898 TCACACATGTTACCACTTACCACT 59.898 41.667 0.00 0.00 0.00 4.00
657 2261 4.382291 TCACACATGTTACCACTTACCAC 58.618 43.478 0.00 0.00 0.00 4.16
658 2262 4.691326 TCACACATGTTACCACTTACCA 57.309 40.909 0.00 0.00 0.00 3.25
659 2263 4.083484 GCTTCACACATGTTACCACTTACC 60.083 45.833 0.00 0.00 0.00 2.85
660 2264 4.513692 TGCTTCACACATGTTACCACTTAC 59.486 41.667 0.00 0.00 0.00 2.34
661 2265 4.709250 TGCTTCACACATGTTACCACTTA 58.291 39.130 0.00 0.00 0.00 2.24
662 2266 3.550820 TGCTTCACACATGTTACCACTT 58.449 40.909 0.00 0.00 0.00 3.16
663 2267 3.141398 CTGCTTCACACATGTTACCACT 58.859 45.455 0.00 0.00 0.00 4.00
707 2311 1.268352 GTTTTACGGCTTGATGTGGCA 59.732 47.619 0.00 0.00 0.00 4.92
720 2324 6.361214 GGAATGGTTTACACACATGTTTTACG 59.639 38.462 0.00 0.00 40.48 3.18
722 2326 7.348080 TGGAATGGTTTACACACATGTTTTA 57.652 32.000 0.00 0.00 40.48 1.52
723 2327 6.227298 TGGAATGGTTTACACACATGTTTT 57.773 33.333 0.00 0.00 40.48 2.43
724 2328 5.860941 TGGAATGGTTTACACACATGTTT 57.139 34.783 0.00 0.00 40.48 2.83
725 2329 6.491745 TGTATGGAATGGTTTACACACATGTT 59.508 34.615 0.00 0.00 40.48 2.71
727 2331 6.507958 TGTATGGAATGGTTTACACACATG 57.492 37.500 0.00 0.00 27.97 3.21
728 2332 7.395772 TGAATGTATGGAATGGTTTACACACAT 59.604 33.333 0.00 0.00 44.03 3.21
729 2333 6.717084 TGAATGTATGGAATGGTTTACACACA 59.283 34.615 0.00 0.00 37.49 3.72
732 2336 7.425606 GGATGAATGTATGGAATGGTTTACAC 58.574 38.462 0.00 0.00 0.00 2.90
733 2337 6.262049 CGGATGAATGTATGGAATGGTTTACA 59.738 38.462 0.00 0.00 0.00 2.41
734 2338 6.485313 TCGGATGAATGTATGGAATGGTTTAC 59.515 38.462 0.00 0.00 0.00 2.01
735 2339 6.485313 GTCGGATGAATGTATGGAATGGTTTA 59.515 38.462 0.00 0.00 0.00 2.01
736 2340 5.299279 GTCGGATGAATGTATGGAATGGTTT 59.701 40.000 0.00 0.00 0.00 3.27
746 3749 3.173965 CCCCTAGGTCGGATGAATGTAT 58.826 50.000 8.29 0.00 0.00 2.29
748 3751 1.424638 CCCCTAGGTCGGATGAATGT 58.575 55.000 8.29 0.00 0.00 2.71
794 3801 1.443872 GACATTCGCTGTCGACCGT 60.444 57.895 14.12 0.00 44.58 4.83
834 3841 4.519437 GTAGTGCGGGGGCGGTAC 62.519 72.222 0.00 0.00 0.00 3.34
1007 4032 2.180017 GTGATTGCGCTGCCTTGG 59.820 61.111 9.73 0.00 0.00 3.61
1137 4166 3.224324 GGCAGAGCCGACGGGATA 61.224 66.667 17.22 0.00 39.62 2.59
1205 4235 1.248785 CCGACCTTGGAGAAGACGGA 61.249 60.000 0.00 0.00 44.29 4.69
1208 4238 1.202817 GAGACCGACCTTGGAGAAGAC 59.797 57.143 0.00 0.00 0.00 3.01
1214 4244 1.411216 GGATAGGAGACCGACCTTGGA 60.411 57.143 0.00 0.00 38.76 3.53
1215 4245 1.041437 GGATAGGAGACCGACCTTGG 58.959 60.000 0.00 0.00 38.76 3.61
1223 4253 1.687660 GGAGGAAACGGATAGGAGACC 59.312 57.143 0.00 0.00 0.00 3.85
1224 4254 1.687660 GGGAGGAAACGGATAGGAGAC 59.312 57.143 0.00 0.00 0.00 3.36
1225 4255 1.412649 GGGGAGGAAACGGATAGGAGA 60.413 57.143 0.00 0.00 0.00 3.71
1226 4256 1.049402 GGGGAGGAAACGGATAGGAG 58.951 60.000 0.00 0.00 0.00 3.69
1227 4257 0.757935 CGGGGAGGAAACGGATAGGA 60.758 60.000 0.00 0.00 0.00 2.94
1228 4258 1.746517 CGGGGAGGAAACGGATAGG 59.253 63.158 0.00 0.00 0.00 2.57
1229 4259 1.069258 GCGGGGAGGAAACGGATAG 59.931 63.158 0.00 0.00 0.00 2.08
1230 4260 2.437396 GGCGGGGAGGAAACGGATA 61.437 63.158 0.00 0.00 0.00 2.59
1231 4261 3.793888 GGCGGGGAGGAAACGGAT 61.794 66.667 0.00 0.00 0.00 4.18
1243 4273 2.781595 AATAATAGAGGCGCGGCGGG 62.782 60.000 27.74 20.45 0.00 6.13
1244 4274 0.949105 AAATAATAGAGGCGCGGCGG 60.949 55.000 27.74 5.97 0.00 6.13
1271 4301 1.587043 GAAGAGGGGAAAACGCAGCC 61.587 60.000 0.00 0.00 33.80 4.85
1273 4303 1.298859 CGGAAGAGGGGAAAACGCAG 61.299 60.000 0.00 0.00 33.80 5.18
1274 4304 1.302192 CGGAAGAGGGGAAAACGCA 60.302 57.895 0.00 0.00 33.80 5.24
1281 4311 1.911766 AGCGAAACGGAAGAGGGGA 60.912 57.895 0.00 0.00 0.00 4.81
1286 4316 4.238385 CGTCAGCGAAACGGAAGA 57.762 55.556 0.00 0.00 41.33 2.87
1450 4480 1.902556 GGGGCAGCGGTAGAAGTAA 59.097 57.895 0.00 0.00 0.00 2.24
1766 4806 8.655651 AACTGGTAGTAATAGTAGTACGAGAC 57.344 38.462 24.83 7.77 41.23 3.36
1780 4820 6.029607 CGAGCGTAATTGTAACTGGTAGTAA 58.970 40.000 0.00 0.00 0.00 2.24
1784 4824 4.168014 CACGAGCGTAATTGTAACTGGTA 58.832 43.478 0.00 0.00 0.00 3.25
1805 4845 1.004679 GTCCCTTACGTTTCCGCCA 60.005 57.895 0.00 0.00 37.70 5.69
1829 4951 0.879765 CGTTCCTCGTCTACACTGGT 59.120 55.000 0.00 0.00 34.52 4.00
1830 4952 0.456312 GCGTTCCTCGTCTACACTGG 60.456 60.000 0.00 0.00 42.13 4.00
1835 4957 2.578981 GCCGCGTTCCTCGTCTAC 60.579 66.667 4.92 0.00 42.13 2.59
1837 4959 4.719369 GTGCCGCGTTCCTCGTCT 62.719 66.667 4.92 0.00 42.13 4.18
1851 4976 0.606401 TGGAGCCAGTAAAGCAGTGC 60.606 55.000 7.13 7.13 0.00 4.40
1866 4991 4.381932 GGTCATGGTTGGCTAAAATTGGAG 60.382 45.833 0.00 0.00 0.00 3.86
1867 4992 3.513515 GGTCATGGTTGGCTAAAATTGGA 59.486 43.478 0.00 0.00 0.00 3.53
1868 4993 3.515104 AGGTCATGGTTGGCTAAAATTGG 59.485 43.478 0.00 0.00 0.00 3.16
1869 4994 4.463891 AGAGGTCATGGTTGGCTAAAATTG 59.536 41.667 0.00 0.00 0.00 2.32
1870 4995 4.463891 CAGAGGTCATGGTTGGCTAAAATT 59.536 41.667 0.00 0.00 0.00 1.82
1872 4997 3.420893 CAGAGGTCATGGTTGGCTAAAA 58.579 45.455 0.00 0.00 0.00 1.52
1879 5005 1.004044 AGGAAGCAGAGGTCATGGTTG 59.996 52.381 0.00 0.00 38.42 3.77
1908 5034 4.724279 ACAAGGGTCAAAAGTATGAGGT 57.276 40.909 0.00 0.00 0.00 3.85
1916 5042 4.141959 ACACATCCAAACAAGGGTCAAAAG 60.142 41.667 0.00 0.00 0.00 2.27
1919 5045 3.025322 ACACATCCAAACAAGGGTCAA 57.975 42.857 0.00 0.00 0.00 3.18
1920 5046 2.692557 CAACACATCCAAACAAGGGTCA 59.307 45.455 0.00 0.00 0.00 4.02
1943 5072 5.866092 TCAGATTGAAGAACTGACGATCAAG 59.134 40.000 0.00 0.00 36.04 3.02
1950 5079 3.932089 GCTCCTCAGATTGAAGAACTGAC 59.068 47.826 0.00 0.00 36.04 3.51
1953 5082 4.906747 AAGCTCCTCAGATTGAAGAACT 57.093 40.909 0.00 0.00 0.00 3.01
1958 5087 3.070159 CGGGATAAGCTCCTCAGATTGAA 59.930 47.826 0.00 0.00 44.28 2.69
1960 5089 2.366916 ACGGGATAAGCTCCTCAGATTG 59.633 50.000 0.00 0.00 44.28 2.67
1961 5090 2.683768 ACGGGATAAGCTCCTCAGATT 58.316 47.619 0.00 0.00 44.28 2.40
1962 5091 2.390225 ACGGGATAAGCTCCTCAGAT 57.610 50.000 0.00 0.00 44.28 2.90
1963 5092 2.032620 GAACGGGATAAGCTCCTCAGA 58.967 52.381 0.00 0.00 44.28 3.27
1964 5093 1.069358 GGAACGGGATAAGCTCCTCAG 59.931 57.143 0.00 0.00 44.28 3.35
1965 5094 1.120530 GGAACGGGATAAGCTCCTCA 58.879 55.000 0.00 0.00 44.28 3.86
1966 5095 1.069358 CAGGAACGGGATAAGCTCCTC 59.931 57.143 0.00 0.00 44.28 3.71
1978 5107 1.939838 GCTTCTACACACCAGGAACGG 60.940 57.143 0.00 0.00 0.00 4.44
1979 5108 1.429463 GCTTCTACACACCAGGAACG 58.571 55.000 0.00 0.00 0.00 3.95
1980 5109 1.429463 CGCTTCTACACACCAGGAAC 58.571 55.000 0.00 0.00 0.00 3.62
1981 5110 0.320374 CCGCTTCTACACACCAGGAA 59.680 55.000 0.00 0.00 0.00 3.36
1982 5111 1.541310 CCCGCTTCTACACACCAGGA 61.541 60.000 0.00 0.00 0.00 3.86
1983 5112 1.079127 CCCGCTTCTACACACCAGG 60.079 63.158 0.00 0.00 0.00 4.45
1984 5113 1.741770 GCCCGCTTCTACACACCAG 60.742 63.158 0.00 0.00 0.00 4.00
1985 5114 2.345991 GCCCGCTTCTACACACCA 59.654 61.111 0.00 0.00 0.00 4.17
1986 5115 2.436115 GGCCCGCTTCTACACACC 60.436 66.667 0.00 0.00 0.00 4.16
1987 5116 1.741770 CTGGCCCGCTTCTACACAC 60.742 63.158 0.00 0.00 0.00 3.82
1988 5117 2.662596 CTGGCCCGCTTCTACACA 59.337 61.111 0.00 0.00 0.00 3.72
1989 5118 2.804828 AAGCTGGCCCGCTTCTACAC 62.805 60.000 26.87 0.00 46.68 2.90
1990 5119 1.261938 TAAGCTGGCCCGCTTCTACA 61.262 55.000 34.16 16.87 46.68 2.74
1991 5120 0.106894 ATAAGCTGGCCCGCTTCTAC 59.893 55.000 34.16 0.00 46.68 2.59
1992 5121 0.393077 GATAAGCTGGCCCGCTTCTA 59.607 55.000 34.16 20.55 46.68 2.10
1993 5122 1.147153 GATAAGCTGGCCCGCTTCT 59.853 57.895 34.16 25.90 46.68 2.85
1994 5123 0.536006 ATGATAAGCTGGCCCGCTTC 60.536 55.000 34.16 22.89 46.68 3.86
1996 5125 1.228063 CATGATAAGCTGGCCCGCT 60.228 57.895 16.98 16.98 43.31 5.52
1997 5126 1.103398 AACATGATAAGCTGGCCCGC 61.103 55.000 11.82 11.82 0.00 6.13
1998 5127 0.947244 GAACATGATAAGCTGGCCCG 59.053 55.000 0.00 0.00 0.00 6.13
1999 5128 2.355010 AGAACATGATAAGCTGGCCC 57.645 50.000 0.00 0.00 0.00 5.80
2000 5129 3.071602 TCCTAGAACATGATAAGCTGGCC 59.928 47.826 0.00 0.00 0.00 5.36
2001 5130 4.342862 TCCTAGAACATGATAAGCTGGC 57.657 45.455 0.00 0.00 0.00 4.85
2002 5131 5.699915 CACATCCTAGAACATGATAAGCTGG 59.300 44.000 0.00 0.00 0.00 4.85
2003 5132 6.286758 ACACATCCTAGAACATGATAAGCTG 58.713 40.000 0.00 0.00 0.00 4.24
2004 5133 6.491714 ACACATCCTAGAACATGATAAGCT 57.508 37.500 0.00 0.00 0.00 3.74
2005 5134 6.763135 TCAACACATCCTAGAACATGATAAGC 59.237 38.462 0.00 0.00 0.00 3.09
2006 5135 8.899427 ATCAACACATCCTAGAACATGATAAG 57.101 34.615 0.00 0.00 0.00 1.73
2007 5136 9.685276 AAATCAACACATCCTAGAACATGATAA 57.315 29.630 0.00 0.00 0.00 1.75
2008 5137 9.112725 CAAATCAACACATCCTAGAACATGATA 57.887 33.333 0.00 0.00 0.00 2.15
2009 5138 7.830697 TCAAATCAACACATCCTAGAACATGAT 59.169 33.333 0.00 0.00 0.00 2.45
2010 5139 7.167535 TCAAATCAACACATCCTAGAACATGA 58.832 34.615 0.00 0.00 0.00 3.07
2011 5140 7.381766 TCAAATCAACACATCCTAGAACATG 57.618 36.000 0.00 0.00 0.00 3.21
2012 5141 8.585471 AATCAAATCAACACATCCTAGAACAT 57.415 30.769 0.00 0.00 0.00 2.71
2013 5142 8.946085 GTAATCAAATCAACACATCCTAGAACA 58.054 33.333 0.00 0.00 0.00 3.18
2014 5143 8.398665 GGTAATCAAATCAACACATCCTAGAAC 58.601 37.037 0.00 0.00 0.00 3.01
2015 5144 8.328758 AGGTAATCAAATCAACACATCCTAGAA 58.671 33.333 0.00 0.00 0.00 2.10
2016 5145 7.770433 CAGGTAATCAAATCAACACATCCTAGA 59.230 37.037 0.00 0.00 0.00 2.43
2017 5146 7.554118 ACAGGTAATCAAATCAACACATCCTAG 59.446 37.037 0.00 0.00 0.00 3.02
2018 5147 7.402054 ACAGGTAATCAAATCAACACATCCTA 58.598 34.615 0.00 0.00 0.00 2.94
2019 5148 6.248433 ACAGGTAATCAAATCAACACATCCT 58.752 36.000 0.00 0.00 0.00 3.24
2020 5149 6.515272 ACAGGTAATCAAATCAACACATCC 57.485 37.500 0.00 0.00 0.00 3.51
2023 5152 9.689976 CAATAAACAGGTAATCAAATCAACACA 57.310 29.630 0.00 0.00 0.00 3.72
2024 5153 9.691362 ACAATAAACAGGTAATCAAATCAACAC 57.309 29.630 0.00 0.00 0.00 3.32
2025 5154 9.689976 CACAATAAACAGGTAATCAAATCAACA 57.310 29.630 0.00 0.00 0.00 3.33
2026 5155 9.139174 CCACAATAAACAGGTAATCAAATCAAC 57.861 33.333 0.00 0.00 0.00 3.18
2027 5156 8.310382 CCCACAATAAACAGGTAATCAAATCAA 58.690 33.333 0.00 0.00 0.00 2.57
2028 5157 7.671819 TCCCACAATAAACAGGTAATCAAATCA 59.328 33.333 0.00 0.00 0.00 2.57
2029 5158 8.062065 TCCCACAATAAACAGGTAATCAAATC 57.938 34.615 0.00 0.00 0.00 2.17
2030 5159 8.429237 TTCCCACAATAAACAGGTAATCAAAT 57.571 30.769 0.00 0.00 0.00 2.32
2031 5160 7.524698 GCTTCCCACAATAAACAGGTAATCAAA 60.525 37.037 0.00 0.00 0.00 2.69
2032 5161 6.071616 GCTTCCCACAATAAACAGGTAATCAA 60.072 38.462 0.00 0.00 0.00 2.57
2033 5162 5.417580 GCTTCCCACAATAAACAGGTAATCA 59.582 40.000 0.00 0.00 0.00 2.57
2034 5163 5.448632 CGCTTCCCACAATAAACAGGTAATC 60.449 44.000 0.00 0.00 0.00 1.75
2035 5164 4.398044 CGCTTCCCACAATAAACAGGTAAT 59.602 41.667 0.00 0.00 0.00 1.89
2036 5165 3.754323 CGCTTCCCACAATAAACAGGTAA 59.246 43.478 0.00 0.00 0.00 2.85
2037 5166 3.340034 CGCTTCCCACAATAAACAGGTA 58.660 45.455 0.00 0.00 0.00 3.08
2038 5167 2.159382 CGCTTCCCACAATAAACAGGT 58.841 47.619 0.00 0.00 0.00 4.00
2039 5168 1.472480 CCGCTTCCCACAATAAACAGG 59.528 52.381 0.00 0.00 0.00 4.00
2040 5169 2.161609 GTCCGCTTCCCACAATAAACAG 59.838 50.000 0.00 0.00 0.00 3.16
2041 5170 2.156098 GTCCGCTTCCCACAATAAACA 58.844 47.619 0.00 0.00 0.00 2.83
2042 5171 1.471287 GGTCCGCTTCCCACAATAAAC 59.529 52.381 0.00 0.00 0.00 2.01
2043 5172 1.074084 TGGTCCGCTTCCCACAATAAA 59.926 47.619 0.00 0.00 0.00 1.40
2044 5173 0.693622 TGGTCCGCTTCCCACAATAA 59.306 50.000 0.00 0.00 0.00 1.40
2045 5174 2.378211 TGGTCCGCTTCCCACAATA 58.622 52.632 0.00 0.00 0.00 1.90
2046 5175 3.166434 TGGTCCGCTTCCCACAAT 58.834 55.556 0.00 0.00 0.00 2.71
2050 5179 0.912487 ATAAGGTGGTCCGCTTCCCA 60.912 55.000 1.66 0.00 39.05 4.37
2051 5180 0.255033 AATAAGGTGGTCCGCTTCCC 59.745 55.000 1.66 0.00 39.05 3.97
2052 5181 1.209747 AGAATAAGGTGGTCCGCTTCC 59.790 52.381 1.66 0.00 39.05 3.46
2082 5211 5.186409 AGAGACGTACAGTTAATAAAGGCCA 59.814 40.000 5.01 0.00 0.00 5.36
2246 6171 5.358922 ACTTCAGATATCAAAGAGCAGCTC 58.641 41.667 15.25 15.25 0.00 4.09
2264 6241 0.521291 GCAGCGTGCCAATTACTTCA 59.479 50.000 0.00 0.00 37.42 3.02
2276 6253 3.469899 TTGCATAACTTTAGCAGCGTG 57.530 42.857 0.00 0.00 39.72 5.34
2348 6786 5.163258 ACCTGAAATGAGTCATAAGGCCTAG 60.163 44.000 21.20 0.00 0.00 3.02
2349 6787 4.721776 ACCTGAAATGAGTCATAAGGCCTA 59.278 41.667 21.20 0.00 0.00 3.93
2350 6788 3.525199 ACCTGAAATGAGTCATAAGGCCT 59.475 43.478 21.20 0.00 0.00 5.19
2359 7608 2.076863 CCCGTCAACCTGAAATGAGTC 58.923 52.381 0.00 0.00 0.00 3.36
2391 7640 9.449719 CAGATGGTTAACAGTTATTAGGAACTT 57.550 33.333 8.10 0.00 41.75 2.66
2392 7641 8.603304 ACAGATGGTTAACAGTTATTAGGAACT 58.397 33.333 8.10 0.00 46.37 3.01
2393 7642 8.788325 ACAGATGGTTAACAGTTATTAGGAAC 57.212 34.615 8.10 0.00 0.00 3.62
2394 7643 8.044908 GGACAGATGGTTAACAGTTATTAGGAA 58.955 37.037 8.10 0.00 0.00 3.36
2395 7644 7.365295 GGGACAGATGGTTAACAGTTATTAGGA 60.365 40.741 8.10 0.00 0.00 2.94
2399 7648 6.134535 TGGGACAGATGGTTAACAGTTATT 57.865 37.500 8.10 0.00 0.00 1.40
2400 7649 5.772393 TGGGACAGATGGTTAACAGTTAT 57.228 39.130 8.10 0.00 0.00 1.89
2437 7686 9.334947 CATGTCAATATCACCTTCAATAAGTCT 57.665 33.333 0.00 0.00 0.00 3.24
2448 7697 3.668141 TTGGGCATGTCAATATCACCT 57.332 42.857 0.00 0.00 0.00 4.00
2490 7741 1.306226 AGGCCAGAGGGTCCAGTAC 60.306 63.158 5.01 0.00 40.78 2.73
2602 7859 3.928754 TCCCAGTCTACTATTCTGGCAT 58.071 45.455 5.07 0.00 45.00 4.40
2650 7908 3.751175 TCCTTTCGCACAGTCAAATTAGG 59.249 43.478 0.00 0.00 0.00 2.69
2666 7924 2.860735 CTGCGCACTACTATGTCCTTTC 59.139 50.000 5.66 0.00 0.00 2.62
2683 7941 3.511699 TGCTACTATCACTTTCACTGCG 58.488 45.455 0.00 0.00 0.00 5.18
2728 7986 0.464916 AAGTTCGCTCCCCGTTGTTT 60.465 50.000 0.00 0.00 38.35 2.83
2742 8000 7.278203 GGTTAGTGGCTTATAACTCTCAAGTTC 59.722 40.741 0.00 0.00 44.64 3.01
2757 8015 5.250774 TCTGAAGATAAAGGGTTAGTGGCTT 59.749 40.000 0.00 0.00 0.00 4.35
2802 8060 3.350833 AGAAAATGGCTAGCCTGTTCAG 58.649 45.455 33.07 0.00 36.94 3.02
2816 8074 7.484641 TGAACAGTTTCAGTTCGAAAGAAAATG 59.515 33.333 31.40 31.40 46.59 2.32
2819 8077 6.072948 TGTGAACAGTTTCAGTTCGAAAGAAA 60.073 34.615 17.99 17.99 44.16 2.52
2826 8084 3.312421 ACCATGTGAACAGTTTCAGTTCG 59.688 43.478 0.00 0.00 46.34 3.95
2827 8085 4.900635 ACCATGTGAACAGTTTCAGTTC 57.099 40.909 0.00 0.00 42.60 3.01
2847 8105 6.238022 GGTTCAGTTTTGTGTCTGTACTGTAC 60.238 42.308 10.98 10.98 37.90 2.90
2865 8124 2.072874 ATGGCCAGCTGTGGTTCAGT 62.073 55.000 13.05 0.00 46.96 3.41
2876 8135 1.678101 GGATTCTGTAACATGGCCAGC 59.322 52.381 13.05 0.00 0.00 4.85
2890 8149 3.262915 AGCTCAGCACAAACTAGGATTCT 59.737 43.478 0.00 0.00 0.00 2.40
2914 8173 8.776470 CCAACAAGCAATGAATAAAGAAATTGT 58.224 29.630 0.00 0.00 33.50 2.71
2953 8213 9.288576 CCTCCAAAGCAATAATATTCTGTATGA 57.711 33.333 0.00 0.00 0.00 2.15
2954 8214 8.025445 GCCTCCAAAGCAATAATATTCTGTATG 58.975 37.037 0.00 0.00 0.00 2.39
2978 8238 2.314647 TAGCGACAAGTTGCGTGCC 61.315 57.895 16.99 5.20 44.57 5.01
2983 8243 2.656192 TTTTCGTAGCGACAAGTTGC 57.344 45.000 1.81 4.23 40.27 4.17
2994 8254 4.201851 CCAGTCAGGCAATCATTTTCGTAG 60.202 45.833 0.00 0.00 0.00 3.51
3147 8411 2.171341 TGTAGTTGGCATACACGCAA 57.829 45.000 0.00 0.00 0.00 4.85
3188 8452 5.385509 TTTGTTGTATAAGCCTTGCCTTC 57.614 39.130 0.00 0.00 0.00 3.46
3279 8544 9.617975 GAAAATCCTCTAGTTCATTTGTTCTTG 57.382 33.333 0.00 0.00 0.00 3.02
3404 9275 5.413833 TCAGCTTGGATTGAAGAGAATTGTC 59.586 40.000 0.00 0.00 0.00 3.18
3439 9310 6.421501 TCTTTCGCGTATAAGAGTCAAAAACA 59.578 34.615 5.77 0.00 0.00 2.83
3445 9316 8.867112 AATTATTCTTTCGCGTATAAGAGTCA 57.133 30.769 5.77 3.51 32.43 3.41
3456 9327 8.548721 AGACCTGTAATTAATTATTCTTTCGCG 58.451 33.333 11.00 0.00 0.00 5.87
3505 9376 8.728596 AGTATGTAAGGTAGCTTTCTCCATAT 57.271 34.615 13.21 1.00 0.00 1.78
3532 9403 9.515226 TTATTAGCTCAACAATAAAACTGAGGT 57.485 29.630 7.65 7.65 45.73 3.85
3587 9458 2.429250 GGCAAACTAACAACACCAACCT 59.571 45.455 0.00 0.00 0.00 3.50
3670 9541 6.958192 AGTACTGTCACCCTTTTAAGATAGGA 59.042 38.462 0.00 0.00 33.13 2.94
3672 9543 8.196103 GGTAGTACTGTCACCCTTTTAAGATAG 58.804 40.741 5.39 0.00 0.00 2.08
3673 9544 8.071177 GGTAGTACTGTCACCCTTTTAAGATA 57.929 38.462 5.39 0.00 0.00 1.98
3674 9545 6.944096 GGTAGTACTGTCACCCTTTTAAGAT 58.056 40.000 5.39 0.00 0.00 2.40
3685 9556 3.679083 GCTGGAATGGGTAGTACTGTCAC 60.679 52.174 5.39 0.18 0.00 3.67
3689 9560 3.535561 CTTGCTGGAATGGGTAGTACTG 58.464 50.000 5.39 0.00 0.00 2.74
3706 9577 1.396653 AGGCTCATAATGCACCTTGC 58.603 50.000 0.00 0.00 45.29 4.01
3783 9662 5.513233 ACAAGATTGTAGCTTCATTGGGAT 58.487 37.500 9.18 0.00 40.16 3.85
3789 9668 8.798859 AGAACAATACAAGATTGTAGCTTCAT 57.201 30.769 10.85 0.00 45.80 2.57
3842 10101 2.301346 ACAGGTTCAAGTTTCAGCAGG 58.699 47.619 0.00 0.00 0.00 4.85
3858 10117 5.163540 GGTACAGGGATCGCTATATTACAGG 60.164 48.000 12.54 0.00 0.00 4.00
3882 10141 7.946655 TTGATATAAATCGCTCTACAGTTGG 57.053 36.000 0.00 0.00 34.60 3.77
3992 10266 5.181433 GGTGTGAAGAGAGGTCATAAAAACC 59.819 44.000 0.00 0.00 37.03 3.27
4113 10387 1.868713 ATTGCATTGCATCTTCCCCA 58.131 45.000 12.95 0.00 38.76 4.96
4193 10467 4.083271 CCGATAGATAGTGAATCACTGCGA 60.083 45.833 24.74 13.35 41.75 5.10
4232 10511 8.429641 AGTTAGTTTAGGTGAGACAGAAAATCA 58.570 33.333 0.00 0.00 0.00 2.57
4291 10570 4.100963 TCTGAACTAGCACTTTGACTCCAA 59.899 41.667 0.00 0.00 0.00 3.53
4292 10571 3.641436 TCTGAACTAGCACTTTGACTCCA 59.359 43.478 0.00 0.00 0.00 3.86
4293 10572 4.258702 TCTGAACTAGCACTTTGACTCC 57.741 45.455 0.00 0.00 0.00 3.85
4294 10573 7.385205 TGTTTATCTGAACTAGCACTTTGACTC 59.615 37.037 0.00 0.00 0.00 3.36
4415 10983 7.066766 ACAGGATACAAATGAATCAGAAAGCTC 59.933 37.037 0.00 0.00 41.41 4.09
4494 11062 1.105167 TGCATATTCCTGCTGCAGCC 61.105 55.000 34.64 17.82 40.75 4.85
4576 11144 5.892348 AGGTCACCTGGAGTAAAATCAAAT 58.108 37.500 0.00 0.00 29.57 2.32
4685 11306 2.279069 ACGGCAGAGGTCAGACCAG 61.279 63.158 22.31 11.83 41.95 4.00
5426 12050 1.493950 GCAACGAGATGGCGATGGAG 61.494 60.000 0.00 0.00 35.05 3.86
5769 12393 3.877508 CGTCTCAAAAGGAAAACCAGTCT 59.122 43.478 0.00 0.00 0.00 3.24
5889 12513 1.206849 CTTCCCTCCTGAGTTCAGCTC 59.793 57.143 3.58 0.00 42.47 4.09
5890 12514 1.274712 CTTCCCTCCTGAGTTCAGCT 58.725 55.000 3.58 0.00 42.47 4.24
5891 12515 0.251634 CCTTCCCTCCTGAGTTCAGC 59.748 60.000 3.58 0.00 42.47 4.26
5892 12516 1.650528 ACCTTCCCTCCTGAGTTCAG 58.349 55.000 2.09 2.09 43.40 3.02
5893 12517 2.118403 AACCTTCCCTCCTGAGTTCA 57.882 50.000 0.00 0.00 0.00 3.18
5934 12558 4.101448 GCATCACCCGTGCTCCCT 62.101 66.667 0.00 0.00 39.45 4.20
5937 12561 4.451150 TCCGCATCACCCGTGCTC 62.451 66.667 0.00 0.00 40.37 4.26
5938 12562 4.457496 CTCCGCATCACCCGTGCT 62.457 66.667 0.00 0.00 40.37 4.40
5940 12564 4.758251 TGCTCCGCATCACCCGTG 62.758 66.667 0.00 0.00 31.71 4.94
5971 12595 4.215109 TGAGACGATGATAAGTCCATGGA 58.785 43.478 11.44 11.44 38.08 3.41
5980 12604 4.876125 GGCTCTTGATGAGACGATGATAA 58.124 43.478 0.00 0.00 45.39 1.75
6074 12698 4.158579 GCCATGTCTCGAGTGGATCATATA 59.841 45.833 21.37 0.00 34.94 0.86
6150 12774 1.418373 CGTCTTCACGTGCATCTTCA 58.582 50.000 11.67 0.00 41.42 3.02
6223 12847 3.943137 ATGTCCGGGGCCTGGAAGA 62.943 63.158 35.44 24.43 37.23 2.87
6281 12905 1.522569 GGCCCTGTAGCACTTCGAT 59.477 57.895 0.00 0.00 0.00 3.59
6301 12925 2.759560 GCATGGGGCCGGATGTTT 60.760 61.111 5.05 0.00 36.11 2.83
6487 13113 2.227089 GACAGACGGAGCCGGATGTT 62.227 60.000 18.10 6.59 44.69 2.71
6543 13169 5.983800 TGGAGTATATATAGTCTAGGGGGCT 59.016 44.000 21.59 0.90 34.04 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.