Multiple sequence alignment - TraesCS2D01G354000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G354000 chr2D 100.000 3036 0 0 1 3036 453697374 453694339 0.000000e+00 5607.0
1 TraesCS2D01G354000 chr2D 78.167 742 135 18 1504 2231 453608943 453609671 5.970000e-122 448.0
2 TraesCS2D01G354000 chr2D 83.737 289 41 5 2495 2780 453609382 453609667 4.990000e-68 268.0
3 TraesCS2D01G354000 chr2D 83.566 286 41 5 2499 2781 452618740 452618458 2.320000e-66 263.0
4 TraesCS2D01G354000 chr2D 81.172 239 31 8 2808 3035 49193140 49193375 2.400000e-41 180.0
5 TraesCS2D01G354000 chr2A 94.722 1781 74 10 948 2710 595993700 595995478 0.000000e+00 2750.0
6 TraesCS2D01G354000 chr2A 87.234 799 89 6 1368 2162 596252457 596251668 0.000000e+00 898.0
7 TraesCS2D01G354000 chr2A 87.730 652 73 5 1396 2047 596452030 596451386 0.000000e+00 754.0
8 TraesCS2D01G354000 chr2A 93.884 327 12 1 2710 3036 596470052 596469734 1.270000e-133 486.0
9 TraesCS2D01G354000 chr2A 77.649 774 142 22 1480 2236 596365142 596365901 2.780000e-120 442.0
10 TraesCS2D01G354000 chr2A 94.037 218 8 4 788 1004 596263675 596263462 2.920000e-85 326.0
11 TraesCS2D01G354000 chr2A 87.967 241 29 0 2479 2719 596251906 596251666 4.950000e-73 285.0
12 TraesCS2D01G354000 chr2A 90.278 216 17 3 2705 2918 596251649 596251436 2.300000e-71 279.0
13 TraesCS2D01G354000 chr2A 83.737 289 41 5 2495 2780 596365607 596365892 4.990000e-68 268.0
14 TraesCS2D01G354000 chr2A 81.716 268 24 12 693 951 595992380 595992631 1.850000e-47 200.0
15 TraesCS2D01G354000 chr2A 88.971 136 15 0 2461 2596 596451527 596451392 5.210000e-38 169.0
16 TraesCS2D01G354000 chr2A 79.741 232 32 8 2818 3035 763380547 763380317 1.460000e-33 154.0
17 TraesCS2D01G354000 chr2A 86.325 117 13 2 2150 2266 596251649 596251536 1.140000e-24 124.0
18 TraesCS2D01G354000 chr2A 95.652 69 2 1 703 771 596466955 596466888 3.200000e-20 110.0
19 TraesCS2D01G354000 chr2A 80.992 121 19 4 1131 1249 532848867 532848749 3.220000e-15 93.5
20 TraesCS2D01G354000 chr2B 90.853 1607 98 20 833 2434 534239080 534237518 0.000000e+00 2108.0
21 TraesCS2D01G354000 chr2B 89.233 743 76 2 1420 2162 534214200 534213462 0.000000e+00 926.0
22 TraesCS2D01G354000 chr2B 90.180 499 40 6 870 1360 534214719 534214222 2.550000e-180 641.0
23 TraesCS2D01G354000 chr2B 77.883 737 133 20 1492 2212 532493670 532494392 6.010000e-117 431.0
24 TraesCS2D01G354000 chr2B 88.417 259 30 0 2461 2719 534213718 534213460 2.270000e-81 313.0
25 TraesCS2D01G354000 chr2B 81.944 360 52 9 2461 2819 534238020 534237673 2.960000e-75 292.0
26 TraesCS2D01G354000 chr2B 84.701 268 36 4 2495 2759 532494123 532494388 2.320000e-66 263.0
27 TraesCS2D01G354000 chr2B 87.168 226 23 3 2815 3036 534213047 534212824 5.020000e-63 252.0
28 TraesCS2D01G354000 chr2B 87.000 100 10 2 2165 2264 534213429 534213333 3.200000e-20 110.0
29 TraesCS2D01G354000 chr6A 82.938 211 29 5 2831 3034 53499985 53499775 1.860000e-42 183.0
30 TraesCS2D01G354000 chr5D 81.858 226 29 6 2820 3035 430961264 430961041 2.400000e-41 180.0
31 TraesCS2D01G354000 chr7D 81.250 224 30 6 2820 3033 481389992 481390213 1.450000e-38 171.0
32 TraesCS2D01G354000 chr6B 88.406 69 8 0 1139 1207 51024705 51024773 1.940000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G354000 chr2D 453694339 453697374 3035 True 5607.0 5607 100.0000 1 3036 1 chr2D.!!$R2 3035
1 TraesCS2D01G354000 chr2D 453608943 453609671 728 False 358.0 448 80.9520 1504 2780 2 chr2D.!!$F2 1276
2 TraesCS2D01G354000 chr2A 595992380 595995478 3098 False 1475.0 2750 88.2190 693 2710 2 chr2A.!!$F1 2017
3 TraesCS2D01G354000 chr2A 596451386 596452030 644 True 461.5 754 88.3505 1396 2596 2 chr2A.!!$R5 1200
4 TraesCS2D01G354000 chr2A 596251436 596252457 1021 True 396.5 898 87.9510 1368 2918 4 chr2A.!!$R4 1550
5 TraesCS2D01G354000 chr2A 596365142 596365901 759 False 355.0 442 80.6930 1480 2780 2 chr2A.!!$F2 1300
6 TraesCS2D01G354000 chr2A 596466888 596470052 3164 True 298.0 486 94.7680 703 3036 2 chr2A.!!$R6 2333
7 TraesCS2D01G354000 chr2B 534237518 534239080 1562 True 1200.0 2108 86.3985 833 2819 2 chr2B.!!$R2 1986
8 TraesCS2D01G354000 chr2B 534212824 534214719 1895 True 448.4 926 88.3996 870 3036 5 chr2B.!!$R1 2166
9 TraesCS2D01G354000 chr2B 532493670 532494392 722 False 347.0 431 81.2920 1492 2759 2 chr2B.!!$F1 1267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.030501 ATCCACCCTATTCGTCCCCA 60.031 55.0 0.0 0.0 0.0 4.96 F
303 304 0.030501 TCCACCCTATTCGTCCCCAT 60.031 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 2324 2.951457 TGTCGCGAGGATGACAATTA 57.049 45.000 10.24 0.0 41.82 1.40 R
2263 3376 3.059597 GTCCGCATAAAATCTGACCGATG 60.060 47.826 0.00 0.0 31.20 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.329379 CACCGTTGTCTTCTCTACTGC 58.671 52.381 0.00 0.00 0.00 4.40
21 22 1.961394 ACCGTTGTCTTCTCTACTGCA 59.039 47.619 0.00 0.00 0.00 4.41
22 23 2.029828 ACCGTTGTCTTCTCTACTGCAG 60.030 50.000 13.48 13.48 0.00 4.41
23 24 2.029828 CCGTTGTCTTCTCTACTGCAGT 60.030 50.000 25.12 25.12 0.00 4.40
24 25 3.553096 CCGTTGTCTTCTCTACTGCAGTT 60.553 47.826 27.06 9.41 0.00 3.16
25 26 3.670991 CGTTGTCTTCTCTACTGCAGTTC 59.329 47.826 27.06 6.39 0.00 3.01
26 27 3.560902 TGTCTTCTCTACTGCAGTTCG 57.439 47.619 27.06 16.58 0.00 3.95
27 28 2.255316 GTCTTCTCTACTGCAGTTCGC 58.745 52.381 27.06 3.59 42.89 4.70
28 29 1.202582 TCTTCTCTACTGCAGTTCGCC 59.797 52.381 27.06 0.00 41.33 5.54
29 30 0.246635 TTCTCTACTGCAGTTCGCCC 59.753 55.000 27.06 0.00 41.33 6.13
30 31 1.153549 CTCTACTGCAGTTCGCCCC 60.154 63.158 27.06 0.00 41.33 5.80
31 32 2.509336 CTACTGCAGTTCGCCCCG 60.509 66.667 27.06 1.46 41.33 5.73
32 33 4.752879 TACTGCAGTTCGCCCCGC 62.753 66.667 27.06 0.00 41.33 6.13
69 70 3.636231 CACGCCCCTCCTCCACAA 61.636 66.667 0.00 0.00 0.00 3.33
70 71 2.610859 ACGCCCCTCCTCCACAAT 60.611 61.111 0.00 0.00 0.00 2.71
71 72 2.190578 CGCCCCTCCTCCACAATC 59.809 66.667 0.00 0.00 0.00 2.67
72 73 2.597903 GCCCCTCCTCCACAATCC 59.402 66.667 0.00 0.00 0.00 3.01
73 74 2.308722 GCCCCTCCTCCACAATCCA 61.309 63.158 0.00 0.00 0.00 3.41
74 75 1.609783 CCCCTCCTCCACAATCCAC 59.390 63.158 0.00 0.00 0.00 4.02
75 76 1.221840 CCCTCCTCCACAATCCACG 59.778 63.158 0.00 0.00 0.00 4.94
76 77 1.450312 CCTCCTCCACAATCCACGC 60.450 63.158 0.00 0.00 0.00 5.34
77 78 1.450312 CTCCTCCACAATCCACGCC 60.450 63.158 0.00 0.00 0.00 5.68
78 79 2.184020 CTCCTCCACAATCCACGCCA 62.184 60.000 0.00 0.00 0.00 5.69
79 80 1.746615 CCTCCACAATCCACGCCAG 60.747 63.158 0.00 0.00 0.00 4.85
80 81 2.359850 TCCACAATCCACGCCAGC 60.360 61.111 0.00 0.00 0.00 4.85
81 82 3.443045 CCACAATCCACGCCAGCC 61.443 66.667 0.00 0.00 0.00 4.85
82 83 3.803082 CACAATCCACGCCAGCCG 61.803 66.667 0.00 0.00 44.21 5.52
104 105 2.609610 CCCTCCACCCCCTCGAAA 60.610 66.667 0.00 0.00 0.00 3.46
105 106 2.669240 CCTCCACCCCCTCGAAAC 59.331 66.667 0.00 0.00 0.00 2.78
106 107 2.669240 CTCCACCCCCTCGAAACC 59.331 66.667 0.00 0.00 0.00 3.27
107 108 3.310860 CTCCACCCCCTCGAAACCG 62.311 68.421 0.00 0.00 0.00 4.44
118 119 3.551915 GAAACCGCGCGCCTACTC 61.552 66.667 27.36 13.70 0.00 2.59
124 125 4.273257 GCGCGCCTACTCCTCCTC 62.273 72.222 23.24 0.00 0.00 3.71
125 126 2.829003 CGCGCCTACTCCTCCTCA 60.829 66.667 0.00 0.00 0.00 3.86
126 127 2.840066 CGCGCCTACTCCTCCTCAG 61.840 68.421 0.00 0.00 0.00 3.35
127 128 3.124686 CGCCTACTCCTCCTCAGC 58.875 66.667 0.00 0.00 0.00 4.26
128 129 2.494530 CGCCTACTCCTCCTCAGCC 61.495 68.421 0.00 0.00 0.00 4.85
129 130 2.494530 GCCTACTCCTCCTCAGCCG 61.495 68.421 0.00 0.00 0.00 5.52
130 131 1.830408 CCTACTCCTCCTCAGCCGG 60.830 68.421 0.00 0.00 0.00 6.13
131 132 2.442272 TACTCCTCCTCAGCCGGC 60.442 66.667 21.89 21.89 0.00 6.13
149 150 2.354539 GCAGATCGAGCGAGCCTC 60.355 66.667 9.53 0.00 37.22 4.70
150 151 2.334653 CAGATCGAGCGAGCCTCC 59.665 66.667 4.37 0.00 37.27 4.30
151 152 2.909965 AGATCGAGCGAGCCTCCC 60.910 66.667 4.37 0.00 37.27 4.30
152 153 2.909965 GATCGAGCGAGCCTCCCT 60.910 66.667 0.00 0.00 37.27 4.20
153 154 2.909965 ATCGAGCGAGCCTCCCTC 60.910 66.667 0.00 0.00 37.27 4.30
160 161 3.462678 GAGCCTCCCTCGTCCACC 61.463 72.222 0.00 0.00 0.00 4.61
161 162 4.316823 AGCCTCCCTCGTCCACCA 62.317 66.667 0.00 0.00 0.00 4.17
162 163 3.775654 GCCTCCCTCGTCCACCAG 61.776 72.222 0.00 0.00 0.00 4.00
163 164 2.037367 CCTCCCTCGTCCACCAGA 59.963 66.667 0.00 0.00 0.00 3.86
164 165 2.352032 CCTCCCTCGTCCACCAGAC 61.352 68.421 0.00 0.00 42.54 3.51
165 166 2.283676 TCCCTCGTCCACCAGACC 60.284 66.667 0.00 0.00 43.08 3.85
166 167 3.391382 CCCTCGTCCACCAGACCC 61.391 72.222 0.00 0.00 43.08 4.46
167 168 2.603473 CCTCGTCCACCAGACCCA 60.603 66.667 0.00 0.00 43.08 4.51
168 169 2.657237 CTCGTCCACCAGACCCAC 59.343 66.667 0.00 0.00 43.08 4.61
169 170 2.920912 TCGTCCACCAGACCCACC 60.921 66.667 0.00 0.00 43.08 4.61
170 171 3.238497 CGTCCACCAGACCCACCA 61.238 66.667 0.00 0.00 43.08 4.17
171 172 2.430367 GTCCACCAGACCCACCAC 59.570 66.667 0.00 0.00 39.84 4.16
172 173 2.852075 TCCACCAGACCCACCACC 60.852 66.667 0.00 0.00 0.00 4.61
173 174 3.966543 CCACCAGACCCACCACCC 61.967 72.222 0.00 0.00 0.00 4.61
174 175 3.966543 CACCAGACCCACCACCCC 61.967 72.222 0.00 0.00 0.00 4.95
175 176 4.525028 ACCAGACCCACCACCCCA 62.525 66.667 0.00 0.00 0.00 4.96
176 177 3.182263 CCAGACCCACCACCCCAA 61.182 66.667 0.00 0.00 0.00 4.12
177 178 2.773527 CCAGACCCACCACCCCAAA 61.774 63.158 0.00 0.00 0.00 3.28
178 179 1.231641 CAGACCCACCACCCCAAAA 59.768 57.895 0.00 0.00 0.00 2.44
179 180 0.178935 CAGACCCACCACCCCAAAAT 60.179 55.000 0.00 0.00 0.00 1.82
180 181 0.114364 AGACCCACCACCCCAAAATC 59.886 55.000 0.00 0.00 0.00 2.17
181 182 0.178947 GACCCACCACCCCAAAATCA 60.179 55.000 0.00 0.00 0.00 2.57
182 183 0.178935 ACCCACCACCCCAAAATCAG 60.179 55.000 0.00 0.00 0.00 2.90
183 184 0.114168 CCCACCACCCCAAAATCAGA 59.886 55.000 0.00 0.00 0.00 3.27
184 185 1.256812 CCACCACCCCAAAATCAGAC 58.743 55.000 0.00 0.00 0.00 3.51
185 186 1.256812 CACCACCCCAAAATCAGACC 58.743 55.000 0.00 0.00 0.00 3.85
186 187 1.158007 ACCACCCCAAAATCAGACCT 58.842 50.000 0.00 0.00 0.00 3.85
187 188 1.075536 ACCACCCCAAAATCAGACCTC 59.924 52.381 0.00 0.00 0.00 3.85
188 189 1.616994 CCACCCCAAAATCAGACCTCC 60.617 57.143 0.00 0.00 0.00 4.30
189 190 0.328258 ACCCCAAAATCAGACCTCCG 59.672 55.000 0.00 0.00 0.00 4.63
190 191 1.032114 CCCCAAAATCAGACCTCCGC 61.032 60.000 0.00 0.00 0.00 5.54
191 192 1.032114 CCCAAAATCAGACCTCCGCC 61.032 60.000 0.00 0.00 0.00 6.13
192 193 1.369091 CCAAAATCAGACCTCCGCCG 61.369 60.000 0.00 0.00 0.00 6.46
193 194 1.745489 AAAATCAGACCTCCGCCGC 60.745 57.895 0.00 0.00 0.00 6.53
194 195 2.185310 AAAATCAGACCTCCGCCGCT 62.185 55.000 0.00 0.00 0.00 5.52
195 196 2.579684 AAATCAGACCTCCGCCGCTC 62.580 60.000 0.00 0.00 0.00 5.03
222 223 3.683937 GGCATTGCCGTGGTTGCT 61.684 61.111 12.82 0.00 39.62 3.91
223 224 2.431260 GCATTGCCGTGGTTGCTG 60.431 61.111 0.00 0.00 32.41 4.41
224 225 2.431260 CATTGCCGTGGTTGCTGC 60.431 61.111 0.00 0.00 0.00 5.25
225 226 3.683937 ATTGCCGTGGTTGCTGCC 61.684 61.111 0.00 0.00 0.00 4.85
227 228 4.972733 TGCCGTGGTTGCTGCCAT 62.973 61.111 0.00 0.00 41.08 4.40
228 229 4.424566 GCCGTGGTTGCTGCCATG 62.425 66.667 10.96 10.96 43.37 3.66
229 230 2.672651 CCGTGGTTGCTGCCATGA 60.673 61.111 17.16 0.00 45.87 3.07
230 231 2.267351 CCGTGGTTGCTGCCATGAA 61.267 57.895 17.16 0.00 45.87 2.57
231 232 1.210931 CGTGGTTGCTGCCATGAAG 59.789 57.895 12.12 0.00 45.87 3.02
232 233 1.080298 GTGGTTGCTGCCATGAAGC 60.080 57.895 12.07 12.07 41.08 3.86
233 234 2.277591 TGGTTGCTGCCATGAAGCC 61.278 57.895 15.24 3.83 40.06 4.35
234 235 2.180017 GTTGCTGCCATGAAGCCG 59.820 61.111 15.24 0.34 40.06 5.52
235 236 3.751246 TTGCTGCCATGAAGCCGC 61.751 61.111 15.24 9.85 42.62 6.53
236 237 4.728110 TGCTGCCATGAAGCCGCT 62.728 61.111 15.24 0.00 42.74 5.52
237 238 3.446570 GCTGCCATGAAGCCGCTT 61.447 61.111 4.98 4.98 39.59 4.68
238 239 2.796651 CTGCCATGAAGCCGCTTC 59.203 61.111 23.75 23.75 40.54 3.86
239 240 2.751436 TGCCATGAAGCCGCTTCC 60.751 61.111 26.58 13.83 39.51 3.46
240 241 2.751436 GCCATGAAGCCGCTTCCA 60.751 61.111 26.58 16.51 39.51 3.53
241 242 3.056313 GCCATGAAGCCGCTTCCAC 62.056 63.158 26.58 12.00 39.51 4.02
242 243 2.753966 CCATGAAGCCGCTTCCACG 61.754 63.158 26.58 15.92 39.51 4.94
243 244 1.741401 CATGAAGCCGCTTCCACGA 60.741 57.895 26.58 11.36 39.51 4.35
244 245 1.741770 ATGAAGCCGCTTCCACGAC 60.742 57.895 26.58 5.58 39.51 4.34
245 246 3.479269 GAAGCCGCTTCCACGACG 61.479 66.667 20.63 0.00 34.71 5.12
246 247 3.909258 GAAGCCGCTTCCACGACGA 62.909 63.158 20.63 0.00 34.71 4.20
247 248 3.296709 AAGCCGCTTCCACGACGAT 62.297 57.895 0.00 0.00 34.06 3.73
248 249 3.554692 GCCGCTTCCACGACGATG 61.555 66.667 0.00 0.00 34.06 3.84
249 250 2.885644 CCGCTTCCACGACGATGG 60.886 66.667 0.00 5.98 41.57 3.51
250 251 3.554692 CGCTTCCACGACGATGGC 61.555 66.667 0.00 0.00 39.85 4.40
251 252 2.125512 GCTTCCACGACGATGGCT 60.126 61.111 0.00 0.00 39.85 4.75
252 253 1.141019 GCTTCCACGACGATGGCTA 59.859 57.895 0.00 0.00 39.85 3.93
253 254 0.872021 GCTTCCACGACGATGGCTAG 60.872 60.000 0.00 7.71 39.85 3.42
254 255 0.456221 CTTCCACGACGATGGCTAGT 59.544 55.000 0.00 0.00 39.85 2.57
255 256 0.172578 TTCCACGACGATGGCTAGTG 59.827 55.000 0.00 0.00 39.85 2.74
256 257 0.963856 TCCACGACGATGGCTAGTGT 60.964 55.000 0.00 0.00 39.85 3.55
257 258 0.802222 CCACGACGATGGCTAGTGTG 60.802 60.000 0.00 0.00 31.52 3.82
258 259 0.802222 CACGACGATGGCTAGTGTGG 60.802 60.000 0.00 0.00 0.00 4.17
259 260 1.248785 ACGACGATGGCTAGTGTGGT 61.249 55.000 0.00 0.00 0.00 4.16
260 261 0.108804 CGACGATGGCTAGTGTGGTT 60.109 55.000 0.00 0.00 0.00 3.67
261 262 1.641577 GACGATGGCTAGTGTGGTTC 58.358 55.000 0.00 0.00 0.00 3.62
262 263 0.249398 ACGATGGCTAGTGTGGTTCC 59.751 55.000 0.00 0.00 0.00 3.62
263 264 0.537188 CGATGGCTAGTGTGGTTCCT 59.463 55.000 0.00 0.00 0.00 3.36
264 265 1.471676 CGATGGCTAGTGTGGTTCCTC 60.472 57.143 0.00 0.00 0.00 3.71
265 266 1.834263 GATGGCTAGTGTGGTTCCTCT 59.166 52.381 0.00 0.00 0.00 3.69
266 267 1.267121 TGGCTAGTGTGGTTCCTCTC 58.733 55.000 0.00 0.00 0.00 3.20
267 268 0.537653 GGCTAGTGTGGTTCCTCTCC 59.462 60.000 0.00 0.00 0.00 3.71
268 269 0.173708 GCTAGTGTGGTTCCTCTCCG 59.826 60.000 0.00 0.00 0.00 4.63
269 270 0.173708 CTAGTGTGGTTCCTCTCCGC 59.826 60.000 0.00 0.00 36.18 5.54
270 271 1.592400 TAGTGTGGTTCCTCTCCGCG 61.592 60.000 0.00 0.00 38.19 6.46
271 272 2.599281 TGTGGTTCCTCTCCGCGA 60.599 61.111 8.23 0.00 38.19 5.87
272 273 2.126031 GTGGTTCCTCTCCGCGAC 60.126 66.667 8.23 0.00 0.00 5.19
273 274 3.379445 TGGTTCCTCTCCGCGACC 61.379 66.667 8.23 5.68 0.00 4.79
274 275 4.144703 GGTTCCTCTCCGCGACCC 62.145 72.222 8.23 0.00 0.00 4.46
275 276 4.144703 GTTCCTCTCCGCGACCCC 62.145 72.222 8.23 0.00 0.00 4.95
291 292 2.366972 CCCCCTTCGATCCACCCT 60.367 66.667 0.00 0.00 0.00 4.34
292 293 1.074775 CCCCCTTCGATCCACCCTA 60.075 63.158 0.00 0.00 0.00 3.53
293 294 0.473886 CCCCCTTCGATCCACCCTAT 60.474 60.000 0.00 0.00 0.00 2.57
294 295 1.435256 CCCCTTCGATCCACCCTATT 58.565 55.000 0.00 0.00 0.00 1.73
295 296 1.348036 CCCCTTCGATCCACCCTATTC 59.652 57.143 0.00 0.00 0.00 1.75
296 297 1.000955 CCCTTCGATCCACCCTATTCG 59.999 57.143 0.00 0.00 0.00 3.34
297 298 1.687123 CCTTCGATCCACCCTATTCGT 59.313 52.381 0.00 0.00 33.52 3.85
298 299 2.288273 CCTTCGATCCACCCTATTCGTC 60.288 54.545 0.00 0.00 33.52 4.20
299 300 1.325355 TCGATCCACCCTATTCGTCC 58.675 55.000 0.00 0.00 33.52 4.79
300 301 0.317479 CGATCCACCCTATTCGTCCC 59.683 60.000 0.00 0.00 0.00 4.46
301 302 0.685660 GATCCACCCTATTCGTCCCC 59.314 60.000 0.00 0.00 0.00 4.81
302 303 0.030501 ATCCACCCTATTCGTCCCCA 60.031 55.000 0.00 0.00 0.00 4.96
303 304 0.030501 TCCACCCTATTCGTCCCCAT 60.031 55.000 0.00 0.00 0.00 4.00
304 305 0.108585 CCACCCTATTCGTCCCCATG 59.891 60.000 0.00 0.00 0.00 3.66
305 306 0.108585 CACCCTATTCGTCCCCATGG 59.891 60.000 4.14 4.14 0.00 3.66
306 307 1.073199 CCCTATTCGTCCCCATGGC 59.927 63.158 6.09 0.00 0.00 4.40
307 308 1.301716 CCTATTCGTCCCCATGGCG 60.302 63.158 6.09 4.90 34.01 5.69
308 309 1.445942 CTATTCGTCCCCATGGCGT 59.554 57.895 6.09 0.00 34.26 5.68
309 310 0.600255 CTATTCGTCCCCATGGCGTC 60.600 60.000 6.09 0.00 34.26 5.19
310 311 2.358193 TATTCGTCCCCATGGCGTCG 62.358 60.000 6.09 8.07 34.26 5.12
312 313 4.221422 CGTCCCCATGGCGTCGAT 62.221 66.667 10.04 0.00 0.00 3.59
313 314 2.189521 GTCCCCATGGCGTCGATT 59.810 61.111 6.09 0.00 0.00 3.34
314 315 1.451387 GTCCCCATGGCGTCGATTT 60.451 57.895 6.09 0.00 0.00 2.17
315 316 1.153249 TCCCCATGGCGTCGATTTC 60.153 57.895 6.09 0.00 0.00 2.17
316 317 1.153168 CCCCATGGCGTCGATTTCT 60.153 57.895 6.09 0.00 0.00 2.52
317 318 0.105964 CCCCATGGCGTCGATTTCTA 59.894 55.000 6.09 0.00 0.00 2.10
318 319 1.474320 CCCCATGGCGTCGATTTCTAA 60.474 52.381 6.09 0.00 0.00 2.10
319 320 2.285083 CCCATGGCGTCGATTTCTAAA 58.715 47.619 6.09 0.00 0.00 1.85
320 321 2.680841 CCCATGGCGTCGATTTCTAAAA 59.319 45.455 6.09 0.00 0.00 1.52
321 322 3.315191 CCCATGGCGTCGATTTCTAAAAT 59.685 43.478 6.09 0.00 0.00 1.82
322 323 4.202010 CCCATGGCGTCGATTTCTAAAATT 60.202 41.667 6.09 0.00 0.00 1.82
323 324 4.734854 CCATGGCGTCGATTTCTAAAATTG 59.265 41.667 0.00 0.00 0.00 2.32
324 325 5.331902 CATGGCGTCGATTTCTAAAATTGT 58.668 37.500 0.00 0.00 0.00 2.71
325 326 4.965062 TGGCGTCGATTTCTAAAATTGTC 58.035 39.130 0.00 0.00 0.00 3.18
326 327 4.019867 GGCGTCGATTTCTAAAATTGTCG 58.980 43.478 12.09 12.09 0.00 4.35
327 328 3.473902 GCGTCGATTTCTAAAATTGTCGC 59.526 43.478 20.20 20.20 39.76 5.19
328 329 4.724036 GCGTCGATTTCTAAAATTGTCGCT 60.724 41.667 24.10 0.00 41.73 4.93
329 330 5.313623 CGTCGATTTCTAAAATTGTCGCTT 58.686 37.500 0.00 0.00 0.00 4.68
330 331 5.445014 CGTCGATTTCTAAAATTGTCGCTTC 59.555 40.000 0.00 0.00 0.00 3.86
331 332 5.445014 GTCGATTTCTAAAATTGTCGCTTCG 59.555 40.000 0.00 0.00 0.00 3.79
332 333 4.200366 CGATTTCTAAAATTGTCGCTTCGC 59.800 41.667 0.00 0.00 0.00 4.70
333 334 3.465122 TTCTAAAATTGTCGCTTCGCC 57.535 42.857 0.00 0.00 0.00 5.54
334 335 1.735571 TCTAAAATTGTCGCTTCGCCC 59.264 47.619 0.00 0.00 0.00 6.13
335 336 0.806241 TAAAATTGTCGCTTCGCCCC 59.194 50.000 0.00 0.00 0.00 5.80
336 337 2.195123 AAAATTGTCGCTTCGCCCCG 62.195 55.000 0.00 0.00 0.00 5.73
348 349 4.821589 GCCCCGCTCAACCGAGAG 62.822 72.222 0.00 0.00 42.34 3.20
373 374 2.783228 AAAAACGTGCGAGGGAACA 58.217 47.368 0.00 0.00 0.00 3.18
374 375 1.314730 AAAAACGTGCGAGGGAACAT 58.685 45.000 0.00 0.00 0.00 2.71
375 376 2.172851 AAAACGTGCGAGGGAACATA 57.827 45.000 0.00 0.00 0.00 2.29
376 377 2.172851 AAACGTGCGAGGGAACATAA 57.827 45.000 0.00 0.00 0.00 1.90
377 378 1.435577 AACGTGCGAGGGAACATAAC 58.564 50.000 0.00 0.00 0.00 1.89
378 379 0.319083 ACGTGCGAGGGAACATAACA 59.681 50.000 0.00 0.00 0.00 2.41
379 380 1.066430 ACGTGCGAGGGAACATAACAT 60.066 47.619 0.00 0.00 0.00 2.71
380 381 1.593006 CGTGCGAGGGAACATAACATC 59.407 52.381 0.00 0.00 0.00 3.06
381 382 1.593006 GTGCGAGGGAACATAACATCG 59.407 52.381 0.00 0.00 0.00 3.84
382 383 1.217882 GCGAGGGAACATAACATCGG 58.782 55.000 0.00 0.00 0.00 4.18
383 384 1.217882 CGAGGGAACATAACATCGGC 58.782 55.000 0.00 0.00 0.00 5.54
384 385 1.217882 GAGGGAACATAACATCGGCG 58.782 55.000 0.00 0.00 0.00 6.46
385 386 0.828022 AGGGAACATAACATCGGCGA 59.172 50.000 13.87 13.87 0.00 5.54
386 387 1.208535 AGGGAACATAACATCGGCGAA 59.791 47.619 15.93 0.00 0.00 4.70
387 388 1.329599 GGGAACATAACATCGGCGAAC 59.670 52.381 15.93 0.00 0.00 3.95
388 389 2.277084 GGAACATAACATCGGCGAACT 58.723 47.619 15.93 3.59 0.00 3.01
389 390 2.284417 GGAACATAACATCGGCGAACTC 59.716 50.000 15.93 1.71 0.00 3.01
390 391 2.665649 ACATAACATCGGCGAACTCA 57.334 45.000 15.93 0.00 0.00 3.41
391 392 2.268298 ACATAACATCGGCGAACTCAC 58.732 47.619 15.93 0.00 0.00 3.51
392 393 1.593006 CATAACATCGGCGAACTCACC 59.407 52.381 15.93 0.00 0.00 4.02
393 394 0.108520 TAACATCGGCGAACTCACCC 60.109 55.000 15.93 0.00 0.00 4.61
394 395 2.885644 CATCGGCGAACTCACCCG 60.886 66.667 15.93 0.00 43.21 5.28
396 397 3.066190 TCGGCGAACTCACCCGAT 61.066 61.111 7.35 0.00 45.30 4.18
397 398 2.582498 CGGCGAACTCACCCGATC 60.582 66.667 0.00 0.00 44.55 3.69
398 399 2.582498 GGCGAACTCACCCGATCG 60.582 66.667 8.51 8.51 38.28 3.69
399 400 2.582498 GCGAACTCACCCGATCGG 60.582 66.667 27.65 27.65 35.91 4.18
400 401 3.060020 GCGAACTCACCCGATCGGA 62.060 63.158 35.42 14.93 37.50 4.55
401 402 1.064296 CGAACTCACCCGATCGGAG 59.936 63.158 35.42 25.48 37.50 4.63
402 403 1.654954 CGAACTCACCCGATCGGAGT 61.655 60.000 35.42 26.16 43.35 3.85
403 404 2.667348 AACTCACCCGATCGGAGTT 58.333 52.632 35.42 29.84 44.62 3.01
404 405 0.246635 AACTCACCCGATCGGAGTTG 59.753 55.000 35.42 25.81 46.81 3.16
405 406 1.519455 CTCACCCGATCGGAGTTGC 60.519 63.158 35.42 0.00 37.50 4.17
406 407 2.511600 CACCCGATCGGAGTTGCC 60.512 66.667 35.42 0.00 37.50 4.52
407 408 2.683933 ACCCGATCGGAGTTGCCT 60.684 61.111 35.42 6.32 37.50 4.75
408 409 2.202932 CCCGATCGGAGTTGCCTG 60.203 66.667 35.42 12.07 37.50 4.85
409 410 2.892425 CCGATCGGAGTTGCCTGC 60.892 66.667 30.62 0.00 37.50 4.85
429 430 2.841988 GCCGAGGAGCAGAGGGAT 60.842 66.667 0.00 0.00 0.00 3.85
430 431 2.866726 GCCGAGGAGCAGAGGGATC 61.867 68.421 0.00 0.00 0.00 3.36
434 435 3.453988 GGAGCAGAGGGATCCGAG 58.546 66.667 5.45 0.00 43.24 4.63
435 436 1.152652 GGAGCAGAGGGATCCGAGA 60.153 63.158 5.45 0.00 43.24 4.04
436 437 1.178534 GGAGCAGAGGGATCCGAGAG 61.179 65.000 5.45 0.00 43.24 3.20
448 449 2.124236 CGAGAGGGGAGTAGCCGT 60.124 66.667 0.00 0.00 37.63 5.68
449 450 2.188161 CGAGAGGGGAGTAGCCGTC 61.188 68.421 0.00 0.00 37.63 4.79
450 451 1.227946 GAGAGGGGAGTAGCCGTCT 59.772 63.158 0.00 0.00 37.63 4.18
451 452 0.820482 GAGAGGGGAGTAGCCGTCTC 60.820 65.000 0.00 0.00 39.11 3.36
455 456 3.902086 GGAGTAGCCGTCTCCGCC 61.902 72.222 4.15 0.00 41.36 6.13
456 457 2.829458 GAGTAGCCGTCTCCGCCT 60.829 66.667 0.00 0.00 0.00 5.52
457 458 2.362632 AGTAGCCGTCTCCGCCTT 60.363 61.111 0.00 0.00 0.00 4.35
458 459 1.946475 GAGTAGCCGTCTCCGCCTTT 61.946 60.000 0.00 0.00 0.00 3.11
459 460 1.518792 GTAGCCGTCTCCGCCTTTC 60.519 63.158 0.00 0.00 0.00 2.62
460 461 2.718073 TAGCCGTCTCCGCCTTTCC 61.718 63.158 0.00 0.00 0.00 3.13
462 463 4.814294 CCGTCTCCGCCTTTCCCG 62.814 72.222 0.00 0.00 0.00 5.14
471 472 4.338710 CCTTTCCCGCGAACCCCA 62.339 66.667 8.23 0.00 0.00 4.96
472 473 3.053896 CTTTCCCGCGAACCCCAC 61.054 66.667 8.23 0.00 0.00 4.61
473 474 4.646877 TTTCCCGCGAACCCCACC 62.647 66.667 8.23 0.00 0.00 4.61
488 489 4.626402 ACCGGGGTGGAGGACGAA 62.626 66.667 6.32 0.00 42.00 3.85
489 490 3.771160 CCGGGGTGGAGGACGAAG 61.771 72.222 0.00 0.00 42.00 3.79
490 491 3.771160 CGGGGTGGAGGACGAAGG 61.771 72.222 0.00 0.00 0.00 3.46
491 492 3.400054 GGGGTGGAGGACGAAGGG 61.400 72.222 0.00 0.00 0.00 3.95
492 493 3.400054 GGGTGGAGGACGAAGGGG 61.400 72.222 0.00 0.00 0.00 4.79
493 494 2.284405 GGTGGAGGACGAAGGGGA 60.284 66.667 0.00 0.00 0.00 4.81
494 495 1.916777 GGTGGAGGACGAAGGGGAA 60.917 63.158 0.00 0.00 0.00 3.97
495 496 1.272554 GGTGGAGGACGAAGGGGAAT 61.273 60.000 0.00 0.00 0.00 3.01
496 497 0.107654 GTGGAGGACGAAGGGGAATG 60.108 60.000 0.00 0.00 0.00 2.67
497 498 0.252513 TGGAGGACGAAGGGGAATGA 60.253 55.000 0.00 0.00 0.00 2.57
498 499 0.466124 GGAGGACGAAGGGGAATGAG 59.534 60.000 0.00 0.00 0.00 2.90
499 500 0.466124 GAGGACGAAGGGGAATGAGG 59.534 60.000 0.00 0.00 0.00 3.86
500 501 0.042731 AGGACGAAGGGGAATGAGGA 59.957 55.000 0.00 0.00 0.00 3.71
501 502 0.909623 GGACGAAGGGGAATGAGGAA 59.090 55.000 0.00 0.00 0.00 3.36
502 503 1.134371 GGACGAAGGGGAATGAGGAAG 60.134 57.143 0.00 0.00 0.00 3.46
503 504 1.831736 GACGAAGGGGAATGAGGAAGA 59.168 52.381 0.00 0.00 0.00 2.87
504 505 1.834263 ACGAAGGGGAATGAGGAAGAG 59.166 52.381 0.00 0.00 0.00 2.85
505 506 2.111384 CGAAGGGGAATGAGGAAGAGA 58.889 52.381 0.00 0.00 0.00 3.10
506 507 2.501723 CGAAGGGGAATGAGGAAGAGAA 59.498 50.000 0.00 0.00 0.00 2.87
507 508 3.680196 CGAAGGGGAATGAGGAAGAGAAC 60.680 52.174 0.00 0.00 0.00 3.01
508 509 2.921221 AGGGGAATGAGGAAGAGAACA 58.079 47.619 0.00 0.00 0.00 3.18
509 510 3.260205 AGGGGAATGAGGAAGAGAACAA 58.740 45.455 0.00 0.00 0.00 2.83
510 511 3.657727 AGGGGAATGAGGAAGAGAACAAA 59.342 43.478 0.00 0.00 0.00 2.83
511 512 3.759086 GGGGAATGAGGAAGAGAACAAAC 59.241 47.826 0.00 0.00 0.00 2.93
512 513 4.398319 GGGAATGAGGAAGAGAACAAACA 58.602 43.478 0.00 0.00 0.00 2.83
513 514 4.457257 GGGAATGAGGAAGAGAACAAACAG 59.543 45.833 0.00 0.00 0.00 3.16
514 515 4.083057 GGAATGAGGAAGAGAACAAACAGC 60.083 45.833 0.00 0.00 0.00 4.40
515 516 3.558931 TGAGGAAGAGAACAAACAGCA 57.441 42.857 0.00 0.00 0.00 4.41
516 517 3.206150 TGAGGAAGAGAACAAACAGCAC 58.794 45.455 0.00 0.00 0.00 4.40
517 518 2.550180 GAGGAAGAGAACAAACAGCACC 59.450 50.000 0.00 0.00 0.00 5.01
518 519 1.264288 GGAAGAGAACAAACAGCACCG 59.736 52.381 0.00 0.00 0.00 4.94
519 520 0.663153 AAGAGAACAAACAGCACCGC 59.337 50.000 0.00 0.00 0.00 5.68
520 521 0.179045 AGAGAACAAACAGCACCGCT 60.179 50.000 0.00 0.00 40.77 5.52
521 522 0.663153 GAGAACAAACAGCACCGCTT 59.337 50.000 0.00 0.00 36.40 4.68
522 523 0.663153 AGAACAAACAGCACCGCTTC 59.337 50.000 0.00 0.00 36.40 3.86
523 524 0.657368 GAACAAACAGCACCGCTTCG 60.657 55.000 0.00 0.00 36.40 3.79
533 534 3.350377 CCGCTTCGGGCAGAAAAA 58.650 55.556 0.96 0.00 44.15 1.94
534 535 1.883021 CCGCTTCGGGCAGAAAAAT 59.117 52.632 0.96 0.00 44.15 1.82
535 536 1.091537 CCGCTTCGGGCAGAAAAATA 58.908 50.000 0.96 0.00 44.15 1.40
536 537 1.676006 CCGCTTCGGGCAGAAAAATAT 59.324 47.619 0.96 0.00 44.15 1.28
537 538 2.287009 CCGCTTCGGGCAGAAAAATATC 60.287 50.000 0.96 0.00 44.15 1.63
538 539 2.287009 CGCTTCGGGCAGAAAAATATCC 60.287 50.000 0.96 0.00 41.91 2.59
539 540 2.952310 GCTTCGGGCAGAAAAATATCCT 59.048 45.455 0.96 0.00 38.57 3.24
540 541 3.243201 GCTTCGGGCAGAAAAATATCCTG 60.243 47.826 0.96 0.00 38.57 3.86
541 542 2.930950 TCGGGCAGAAAAATATCCTGG 58.069 47.619 0.00 0.00 0.00 4.45
542 543 1.956477 CGGGCAGAAAAATATCCTGGG 59.044 52.381 0.00 0.00 0.00 4.45
543 544 2.422803 CGGGCAGAAAAATATCCTGGGA 60.423 50.000 0.00 0.00 0.00 4.37
544 545 2.959030 GGGCAGAAAAATATCCTGGGAC 59.041 50.000 0.00 0.00 0.00 4.46
545 546 3.373110 GGGCAGAAAAATATCCTGGGACT 60.373 47.826 0.00 0.00 0.00 3.85
546 547 4.281657 GGCAGAAAAATATCCTGGGACTT 58.718 43.478 0.00 0.00 0.00 3.01
547 548 4.711846 GGCAGAAAAATATCCTGGGACTTT 59.288 41.667 0.00 0.00 0.00 2.66
548 549 5.394553 GGCAGAAAAATATCCTGGGACTTTG 60.395 44.000 0.00 0.00 0.00 2.77
549 550 5.185828 GCAGAAAAATATCCTGGGACTTTGT 59.814 40.000 0.00 0.00 0.00 2.83
550 551 6.295292 GCAGAAAAATATCCTGGGACTTTGTT 60.295 38.462 0.00 0.00 0.00 2.83
551 552 7.670364 CAGAAAAATATCCTGGGACTTTGTTT 58.330 34.615 0.00 0.00 0.00 2.83
552 553 8.150296 CAGAAAAATATCCTGGGACTTTGTTTT 58.850 33.333 0.00 0.00 0.00 2.43
553 554 8.713971 AGAAAAATATCCTGGGACTTTGTTTTT 58.286 29.630 7.91 7.91 0.00 1.94
575 576 6.619329 TTTTGAAGGGAAAAATATCCTGGG 57.381 37.500 0.00 0.00 39.57 4.45
576 577 5.544441 TTGAAGGGAAAAATATCCTGGGA 57.456 39.130 0.00 0.00 39.57 4.37
577 578 4.867086 TGAAGGGAAAAATATCCTGGGAC 58.133 43.478 0.00 0.00 39.57 4.46
578 579 4.544152 TGAAGGGAAAAATATCCTGGGACT 59.456 41.667 0.00 0.00 39.57 3.85
579 580 5.734140 TGAAGGGAAAAATATCCTGGGACTA 59.266 40.000 0.00 0.00 39.57 2.59
580 581 6.218730 TGAAGGGAAAAATATCCTGGGACTAA 59.781 38.462 0.00 0.00 39.57 2.24
581 582 6.865651 AGGGAAAAATATCCTGGGACTAAT 57.134 37.500 0.00 0.00 39.57 1.73
582 583 7.239080 AGGGAAAAATATCCTGGGACTAATT 57.761 36.000 0.00 0.00 39.57 1.40
583 584 7.662083 AGGGAAAAATATCCTGGGACTAATTT 58.338 34.615 0.00 0.00 39.57 1.82
584 585 7.565029 AGGGAAAAATATCCTGGGACTAATTTG 59.435 37.037 0.00 0.00 39.57 2.32
585 586 7.563556 GGGAAAAATATCCTGGGACTAATTTGA 59.436 37.037 0.00 0.00 39.57 2.69
586 587 8.633561 GGAAAAATATCCTGGGACTAATTTGAG 58.366 37.037 0.00 0.00 36.50 3.02
587 588 8.539117 AAAAATATCCTGGGACTAATTTGAGG 57.461 34.615 0.00 0.00 0.00 3.86
588 589 5.850046 ATATCCTGGGACTAATTTGAGGG 57.150 43.478 0.00 0.00 0.00 4.30
589 590 2.205342 TCCTGGGACTAATTTGAGGGG 58.795 52.381 0.00 0.00 0.00 4.79
590 591 1.215423 CCTGGGACTAATTTGAGGGGG 59.785 57.143 0.00 0.00 0.00 5.40
605 606 3.260931 GGGGGCGTTTCGACTTTC 58.739 61.111 0.00 0.00 34.07 2.62
606 607 2.674084 GGGGGCGTTTCGACTTTCG 61.674 63.158 0.00 0.00 42.10 3.46
607 608 2.172659 GGGCGTTTCGACTTTCGC 59.827 61.111 12.14 12.14 46.42 4.70
608 609 2.315386 GGGCGTTTCGACTTTCGCT 61.315 57.895 17.36 0.00 46.37 4.93
609 610 1.130009 GGCGTTTCGACTTTCGCTC 59.870 57.895 17.36 8.21 46.37 5.03
610 611 1.225130 GCGTTTCGACTTTCGCTCG 60.225 57.895 12.93 0.00 44.28 5.03
611 612 1.873355 GCGTTTCGACTTTCGCTCGT 61.873 55.000 12.93 0.00 44.28 4.18
612 613 0.501435 CGTTTCGACTTTCGCTCGTT 59.499 50.000 0.00 0.00 40.21 3.85
613 614 1.071698 CGTTTCGACTTTCGCTCGTTT 60.072 47.619 0.00 0.00 40.21 3.60
614 615 2.595881 CGTTTCGACTTTCGCTCGTTTT 60.596 45.455 0.00 0.00 40.21 2.43
615 616 2.638628 TTCGACTTTCGCTCGTTTTG 57.361 45.000 0.00 0.00 40.21 2.44
616 617 0.856641 TCGACTTTCGCTCGTTTTGG 59.143 50.000 0.00 0.00 40.21 3.28
617 618 0.110823 CGACTTTCGCTCGTTTTGGG 60.111 55.000 0.00 0.00 31.14 4.12
618 619 0.237498 GACTTTCGCTCGTTTTGGGG 59.763 55.000 0.00 0.00 0.00 4.96
619 620 1.081442 CTTTCGCTCGTTTTGGGGC 60.081 57.895 0.00 0.00 0.00 5.80
620 621 2.472232 CTTTCGCTCGTTTTGGGGCC 62.472 60.000 0.00 0.00 0.00 5.80
623 624 4.038080 GCTCGTTTTGGGGCCGTG 62.038 66.667 0.00 0.00 0.00 4.94
624 625 2.593436 CTCGTTTTGGGGCCGTGT 60.593 61.111 0.00 0.00 0.00 4.49
625 626 2.902846 TCGTTTTGGGGCCGTGTG 60.903 61.111 0.00 0.00 0.00 3.82
626 627 2.902846 CGTTTTGGGGCCGTGTGA 60.903 61.111 0.00 0.00 0.00 3.58
627 628 2.265182 CGTTTTGGGGCCGTGTGAT 61.265 57.895 0.00 0.00 0.00 3.06
628 629 1.584495 GTTTTGGGGCCGTGTGATC 59.416 57.895 0.00 0.00 0.00 2.92
629 630 1.969064 TTTTGGGGCCGTGTGATCG 60.969 57.895 0.00 0.00 0.00 3.69
630 631 2.398840 TTTTGGGGCCGTGTGATCGA 62.399 55.000 0.00 0.00 0.00 3.59
631 632 3.599285 TTGGGGCCGTGTGATCGAC 62.599 63.158 0.00 0.00 0.00 4.20
632 633 4.832608 GGGGCCGTGTGATCGACC 62.833 72.222 0.00 0.00 32.80 4.79
633 634 4.832608 GGGCCGTGTGATCGACCC 62.833 72.222 0.00 0.00 45.13 4.46
635 636 4.430765 GCCGTGTGATCGACCCGT 62.431 66.667 0.00 0.00 0.00 5.28
636 637 3.055080 GCCGTGTGATCGACCCGTA 62.055 63.158 0.00 0.00 0.00 4.02
637 638 1.063649 CCGTGTGATCGACCCGTAG 59.936 63.158 0.00 0.00 0.00 3.51
638 639 1.585521 CGTGTGATCGACCCGTAGC 60.586 63.158 0.00 0.00 0.00 3.58
639 640 1.585521 GTGTGATCGACCCGTAGCG 60.586 63.158 0.00 0.00 0.00 4.26
640 641 2.654404 GTGATCGACCCGTAGCGC 60.654 66.667 0.00 0.00 0.00 5.92
641 642 4.246206 TGATCGACCCGTAGCGCG 62.246 66.667 0.00 0.00 40.95 6.86
657 658 3.613702 CGCCGCCGAACACGATAC 61.614 66.667 0.00 0.00 36.29 2.24
658 659 3.613702 GCCGCCGAACACGATACG 61.614 66.667 0.00 0.00 0.00 3.06
659 660 2.100797 CCGCCGAACACGATACGA 59.899 61.111 0.00 0.00 0.00 3.43
660 661 1.298863 CCGCCGAACACGATACGAT 60.299 57.895 0.00 0.00 0.00 3.73
661 662 0.041047 CCGCCGAACACGATACGATA 60.041 55.000 0.00 0.00 0.00 2.92
662 663 1.400629 CCGCCGAACACGATACGATAT 60.401 52.381 0.00 0.00 0.00 1.63
663 664 2.313234 CGCCGAACACGATACGATATT 58.687 47.619 0.00 0.00 0.00 1.28
664 665 2.722629 CGCCGAACACGATACGATATTT 59.277 45.455 0.00 0.00 0.00 1.40
665 666 3.181556 CGCCGAACACGATACGATATTTC 60.182 47.826 0.00 0.00 0.00 2.17
666 667 3.732219 GCCGAACACGATACGATATTTCA 59.268 43.478 0.00 0.00 0.00 2.69
667 668 4.143597 GCCGAACACGATACGATATTTCAG 60.144 45.833 0.00 0.00 0.00 3.02
668 669 4.381863 CCGAACACGATACGATATTTCAGG 59.618 45.833 0.00 0.00 0.00 3.86
669 670 4.974275 CGAACACGATACGATATTTCAGGT 59.026 41.667 0.00 0.00 0.00 4.00
670 671 6.138088 CGAACACGATACGATATTTCAGGTA 58.862 40.000 0.00 0.00 0.00 3.08
671 672 6.085979 CGAACACGATACGATATTTCAGGTAC 59.914 42.308 0.00 0.00 0.00 3.34
672 673 5.446709 ACACGATACGATATTTCAGGTACG 58.553 41.667 0.00 0.00 0.00 3.67
673 674 5.237127 ACACGATACGATATTTCAGGTACGA 59.763 40.000 0.00 0.00 0.00 3.43
674 675 6.138088 CACGATACGATATTTCAGGTACGAA 58.862 40.000 0.00 0.00 0.00 3.85
675 676 6.800408 CACGATACGATATTTCAGGTACGAAT 59.200 38.462 0.00 0.00 0.00 3.34
676 677 7.325338 CACGATACGATATTTCAGGTACGAATT 59.675 37.037 0.00 0.00 0.00 2.17
677 678 7.864379 ACGATACGATATTTCAGGTACGAATTT 59.136 33.333 0.00 0.00 0.00 1.82
678 679 8.697067 CGATACGATATTTCAGGTACGAATTTT 58.303 33.333 0.00 0.00 0.00 1.82
679 680 9.793245 GATACGATATTTCAGGTACGAATTTTG 57.207 33.333 0.00 0.00 0.00 2.44
680 681 7.605410 ACGATATTTCAGGTACGAATTTTGT 57.395 32.000 0.00 0.00 0.00 2.83
681 682 7.681903 ACGATATTTCAGGTACGAATTTTGTC 58.318 34.615 0.00 0.00 0.00 3.18
682 683 7.123830 CGATATTTCAGGTACGAATTTTGTCC 58.876 38.462 0.00 0.00 0.00 4.02
683 684 4.735662 TTTCAGGTACGAATTTTGTCCG 57.264 40.909 0.00 0.00 0.00 4.79
684 685 3.663995 TCAGGTACGAATTTTGTCCGA 57.336 42.857 0.00 0.00 0.00 4.55
685 686 3.319755 TCAGGTACGAATTTTGTCCGAC 58.680 45.455 0.00 0.00 0.00 4.79
686 687 3.061322 CAGGTACGAATTTTGTCCGACA 58.939 45.455 0.00 0.00 0.00 4.35
687 688 3.062042 AGGTACGAATTTTGTCCGACAC 58.938 45.455 0.00 0.00 0.00 3.67
688 689 2.801679 GGTACGAATTTTGTCCGACACA 59.198 45.455 0.00 0.00 0.00 3.72
689 690 3.120786 GGTACGAATTTTGTCCGACACAG 60.121 47.826 0.00 0.00 35.97 3.66
690 691 1.263217 ACGAATTTTGTCCGACACAGC 59.737 47.619 0.00 0.00 35.97 4.40
691 692 1.262950 CGAATTTTGTCCGACACAGCA 59.737 47.619 0.00 0.00 35.97 4.41
700 701 1.078759 CCGACACAGCAGATCGAACC 61.079 60.000 8.60 0.00 38.10 3.62
750 752 1.003545 CCGCTGGATTTTGCATCGTAG 60.004 52.381 0.00 0.00 0.00 3.51
778 780 8.433421 AAATCTATATAAACTGGACGGTGTTG 57.567 34.615 0.00 0.00 0.00 3.33
779 781 6.778834 TCTATATAAACTGGACGGTGTTGA 57.221 37.500 0.00 0.00 0.00 3.18
782 784 6.920569 ATATAAACTGGACGGTGTTGATTC 57.079 37.500 0.00 0.00 0.00 2.52
784 786 4.345859 AAACTGGACGGTGTTGATTCTA 57.654 40.909 0.00 0.00 0.00 2.10
785 787 4.345859 AACTGGACGGTGTTGATTCTAA 57.654 40.909 0.00 0.00 0.00 2.10
787 789 4.710324 ACTGGACGGTGTTGATTCTAAAA 58.290 39.130 0.00 0.00 0.00 1.52
788 790 5.313712 ACTGGACGGTGTTGATTCTAAAAT 58.686 37.500 0.00 0.00 0.00 1.82
789 791 6.469410 ACTGGACGGTGTTGATTCTAAAATA 58.531 36.000 0.00 0.00 0.00 1.40
790 792 6.938030 ACTGGACGGTGTTGATTCTAAAATAA 59.062 34.615 0.00 0.00 0.00 1.40
791 793 7.446013 ACTGGACGGTGTTGATTCTAAAATAAA 59.554 33.333 0.00 0.00 0.00 1.40
792 794 7.586747 TGGACGGTGTTGATTCTAAAATAAAC 58.413 34.615 0.00 0.00 36.93 2.01
807 809 4.941309 AACGGGGCGGTGTTGGAC 62.941 66.667 0.00 0.00 0.00 4.02
816 818 2.312436 GGTGTTGGACGCACCGTAC 61.312 63.158 0.00 0.00 45.57 3.67
820 822 3.786901 TTGGACGCACCGTACGCAA 62.787 57.895 10.49 3.87 44.60 4.85
821 823 3.770424 GGACGCACCGTACGCAAC 61.770 66.667 10.49 0.00 41.37 4.17
855 858 4.813346 TCCGGCAGGAAGGTTTTC 57.187 55.556 1.89 0.00 45.12 2.29
892 895 4.804665 GCAGGATTTAGGTTAGAACTCGAC 59.195 45.833 0.00 0.00 0.00 4.20
907 910 2.582978 GACTTACCCCACCCGAGC 59.417 66.667 0.00 0.00 0.00 5.03
978 2063 5.507077 CAACATTACGCGCAATAATTAGGT 58.493 37.500 5.73 2.93 0.00 3.08
1018 2103 5.178252 GCACGTATGGATATGGATATCATGC 59.822 44.000 4.83 0.00 40.67 4.06
1021 2106 5.930569 CGTATGGATATGGATATCATGCCTG 59.069 44.000 4.83 0.00 40.67 4.85
1026 2111 1.738474 TGGATATCATGCCTGCCTCT 58.262 50.000 4.83 0.00 0.00 3.69
1165 2253 2.809446 TGTTATCGCGAGGATGACAAG 58.191 47.619 16.66 0.00 45.45 3.16
1183 2271 4.874970 ACAAGTTCTTTTAGCAAGCATGG 58.125 39.130 0.00 0.00 0.00 3.66
1184 2272 4.342092 ACAAGTTCTTTTAGCAAGCATGGT 59.658 37.500 0.00 0.00 41.03 3.55
1229 2317 1.251251 GCCAGGACTTGTCATGCTTT 58.749 50.000 9.57 0.00 0.00 3.51
1236 2324 6.071728 CCAGGACTTGTCATGCTTTCTAAAAT 60.072 38.462 9.57 0.00 0.00 1.82
1250 2338 8.397906 TGCTTTCTAAAATAATTGTCATCCTCG 58.602 33.333 0.00 0.00 0.00 4.63
1674 2777 5.300286 GCATGAGAACAATGGCTAAACCTAT 59.700 40.000 0.00 0.00 40.22 2.57
1702 2807 9.845305 GTTATACTTAAATCAACATCACTACGC 57.155 33.333 0.00 0.00 0.00 4.42
2019 3131 4.446371 ACTAAGATGGAGCTATGCAACAC 58.554 43.478 0.00 0.00 0.00 3.32
2251 3364 9.810545 ATTTCTTTTTCGGTTTTGTTCAATCTA 57.189 25.926 0.00 0.00 0.00 1.98
2537 3660 2.816087 TGCAGAAACAAGAGAATGGAGC 59.184 45.455 0.00 0.00 0.00 4.70
2542 3665 1.446907 ACAAGAGAATGGAGCGCAAG 58.553 50.000 11.47 0.00 43.44 4.01
2551 3674 0.321346 TGGAGCGCAAGATGAGACAA 59.679 50.000 11.47 0.00 43.02 3.18
2568 3691 6.577103 TGAGACAAACTAATCAGGAGCTATG 58.423 40.000 0.00 0.00 0.00 2.23
2629 3752 7.148188 TGTGATAGAAATTTCTCTGCCATTGTC 60.148 37.037 23.70 6.77 38.70 3.18
2940 4356 3.644966 TCACTTCCATCCCAATACACC 57.355 47.619 0.00 0.00 0.00 4.16
2969 4385 1.815421 CCGCAGCGACTTTAGCCAT 60.815 57.895 18.75 0.00 34.64 4.40
2972 4388 1.766143 GCAGCGACTTTAGCCATCCG 61.766 60.000 0.00 0.00 34.64 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.288213 TGCAGTAGAGAAGACAACGGTG 60.288 50.000 0.00 0.00 0.00 4.94
1 2 1.961394 TGCAGTAGAGAAGACAACGGT 59.039 47.619 0.00 0.00 0.00 4.83
2 3 2.029828 ACTGCAGTAGAGAAGACAACGG 60.030 50.000 20.16 0.00 0.00 4.44
3 4 3.290308 ACTGCAGTAGAGAAGACAACG 57.710 47.619 20.16 0.00 0.00 4.10
5 6 3.857383 GCGAACTGCAGTAGAGAAGACAA 60.857 47.826 22.01 0.00 45.45 3.18
7 8 2.255316 GCGAACTGCAGTAGAGAAGAC 58.745 52.381 22.01 0.32 45.45 3.01
8 9 2.638556 GCGAACTGCAGTAGAGAAGA 57.361 50.000 22.01 0.00 45.45 2.87
52 53 2.876368 GATTGTGGAGGAGGGGCGTG 62.876 65.000 0.00 0.00 0.00 5.34
53 54 2.610859 ATTGTGGAGGAGGGGCGT 60.611 61.111 0.00 0.00 0.00 5.68
54 55 2.190578 GATTGTGGAGGAGGGGCG 59.809 66.667 0.00 0.00 0.00 6.13
55 56 2.308722 TGGATTGTGGAGGAGGGGC 61.309 63.158 0.00 0.00 0.00 5.80
56 57 1.609783 GTGGATTGTGGAGGAGGGG 59.390 63.158 0.00 0.00 0.00 4.79
57 58 1.221840 CGTGGATTGTGGAGGAGGG 59.778 63.158 0.00 0.00 0.00 4.30
58 59 1.450312 GCGTGGATTGTGGAGGAGG 60.450 63.158 0.00 0.00 0.00 4.30
59 60 1.450312 GGCGTGGATTGTGGAGGAG 60.450 63.158 0.00 0.00 0.00 3.69
60 61 2.184020 CTGGCGTGGATTGTGGAGGA 62.184 60.000 0.00 0.00 0.00 3.71
61 62 1.746615 CTGGCGTGGATTGTGGAGG 60.747 63.158 0.00 0.00 0.00 4.30
62 63 2.401766 GCTGGCGTGGATTGTGGAG 61.402 63.158 0.00 0.00 0.00 3.86
63 64 2.359850 GCTGGCGTGGATTGTGGA 60.360 61.111 0.00 0.00 0.00 4.02
64 65 3.443045 GGCTGGCGTGGATTGTGG 61.443 66.667 0.00 0.00 0.00 4.17
65 66 3.803082 CGGCTGGCGTGGATTGTG 61.803 66.667 16.07 0.00 0.00 3.33
66 67 4.329545 ACGGCTGGCGTGGATTGT 62.330 61.111 28.66 1.10 0.00 2.71
67 68 3.803082 CACGGCTGGCGTGGATTG 61.803 66.667 38.81 20.28 34.13 2.67
87 88 2.609610 TTTCGAGGGGGTGGAGGG 60.610 66.667 0.00 0.00 0.00 4.30
88 89 2.669240 GTTTCGAGGGGGTGGAGG 59.331 66.667 0.00 0.00 0.00 4.30
89 90 2.669240 GGTTTCGAGGGGGTGGAG 59.331 66.667 0.00 0.00 0.00 3.86
90 91 3.315949 CGGTTTCGAGGGGGTGGA 61.316 66.667 0.00 0.00 39.00 4.02
101 102 3.551915 GAGTAGGCGCGCGGTTTC 61.552 66.667 33.06 14.72 0.00 2.78
107 108 4.273257 GAGGAGGAGTAGGCGCGC 62.273 72.222 25.94 25.94 0.00 6.86
108 109 2.829003 TGAGGAGGAGTAGGCGCG 60.829 66.667 0.00 0.00 0.00 6.86
109 110 3.124686 CTGAGGAGGAGTAGGCGC 58.875 66.667 0.00 0.00 0.00 6.53
110 111 2.494530 GGCTGAGGAGGAGTAGGCG 61.495 68.421 0.00 0.00 0.00 5.52
111 112 2.494530 CGGCTGAGGAGGAGTAGGC 61.495 68.421 0.00 0.00 0.00 3.93
112 113 1.830408 CCGGCTGAGGAGGAGTAGG 60.830 68.421 0.00 0.00 0.00 3.18
113 114 2.494530 GCCGGCTGAGGAGGAGTAG 61.495 68.421 22.15 0.00 0.00 2.57
114 115 2.442272 GCCGGCTGAGGAGGAGTA 60.442 66.667 22.15 0.00 0.00 2.59
132 133 2.354539 GAGGCTCGCTCGATCTGC 60.355 66.667 0.00 0.00 0.00 4.26
133 134 2.334653 GGAGGCTCGCTCGATCTG 59.665 66.667 8.69 0.00 0.00 2.90
134 135 2.909965 GGGAGGCTCGCTCGATCT 60.910 66.667 22.89 0.00 0.00 2.75
135 136 2.909965 AGGGAGGCTCGCTCGATC 60.910 66.667 26.55 2.14 34.27 3.69
136 137 2.909965 GAGGGAGGCTCGCTCGAT 60.910 66.667 35.92 16.82 44.59 3.59
143 144 3.462678 GGTGGACGAGGGAGGCTC 61.463 72.222 5.78 5.78 0.00 4.70
144 145 4.316823 TGGTGGACGAGGGAGGCT 62.317 66.667 0.00 0.00 0.00 4.58
145 146 3.775654 CTGGTGGACGAGGGAGGC 61.776 72.222 0.00 0.00 0.00 4.70
146 147 2.037367 TCTGGTGGACGAGGGAGG 59.963 66.667 0.00 0.00 0.00 4.30
147 148 2.352032 GGTCTGGTGGACGAGGGAG 61.352 68.421 0.00 0.00 45.35 4.30
148 149 2.283676 GGTCTGGTGGACGAGGGA 60.284 66.667 0.00 0.00 45.35 4.20
149 150 3.391382 GGGTCTGGTGGACGAGGG 61.391 72.222 0.00 0.00 45.35 4.30
150 151 2.603473 TGGGTCTGGTGGACGAGG 60.603 66.667 0.00 0.00 45.35 4.63
151 152 2.657237 GTGGGTCTGGTGGACGAG 59.343 66.667 0.00 0.00 45.35 4.18
152 153 2.920912 GGTGGGTCTGGTGGACGA 60.921 66.667 0.00 0.00 45.35 4.20
153 154 3.238497 TGGTGGGTCTGGTGGACG 61.238 66.667 0.00 0.00 45.35 4.79
154 155 2.430367 GTGGTGGGTCTGGTGGAC 59.570 66.667 0.00 0.00 43.79 4.02
155 156 2.852075 GGTGGTGGGTCTGGTGGA 60.852 66.667 0.00 0.00 0.00 4.02
156 157 3.966543 GGGTGGTGGGTCTGGTGG 61.967 72.222 0.00 0.00 0.00 4.61
157 158 3.966543 GGGGTGGTGGGTCTGGTG 61.967 72.222 0.00 0.00 0.00 4.17
158 159 4.525028 TGGGGTGGTGGGTCTGGT 62.525 66.667 0.00 0.00 0.00 4.00
159 160 2.305314 TTTTGGGGTGGTGGGTCTGG 62.305 60.000 0.00 0.00 0.00 3.86
160 161 0.178935 ATTTTGGGGTGGTGGGTCTG 60.179 55.000 0.00 0.00 0.00 3.51
161 162 0.114364 GATTTTGGGGTGGTGGGTCT 59.886 55.000 0.00 0.00 0.00 3.85
162 163 0.178947 TGATTTTGGGGTGGTGGGTC 60.179 55.000 0.00 0.00 0.00 4.46
163 164 0.178935 CTGATTTTGGGGTGGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
164 165 0.114168 TCTGATTTTGGGGTGGTGGG 59.886 55.000 0.00 0.00 0.00 4.61
165 166 1.256812 GTCTGATTTTGGGGTGGTGG 58.743 55.000 0.00 0.00 0.00 4.61
166 167 1.203050 AGGTCTGATTTTGGGGTGGTG 60.203 52.381 0.00 0.00 0.00 4.17
167 168 1.075536 GAGGTCTGATTTTGGGGTGGT 59.924 52.381 0.00 0.00 0.00 4.16
168 169 1.616994 GGAGGTCTGATTTTGGGGTGG 60.617 57.143 0.00 0.00 0.00 4.61
169 170 1.839424 GGAGGTCTGATTTTGGGGTG 58.161 55.000 0.00 0.00 0.00 4.61
170 171 0.328258 CGGAGGTCTGATTTTGGGGT 59.672 55.000 0.00 0.00 0.00 4.95
171 172 1.032114 GCGGAGGTCTGATTTTGGGG 61.032 60.000 0.00 0.00 0.00 4.96
172 173 1.032114 GGCGGAGGTCTGATTTTGGG 61.032 60.000 0.00 0.00 0.00 4.12
173 174 1.369091 CGGCGGAGGTCTGATTTTGG 61.369 60.000 0.00 0.00 0.00 3.28
174 175 1.982073 GCGGCGGAGGTCTGATTTTG 61.982 60.000 9.78 0.00 0.00 2.44
175 176 1.745489 GCGGCGGAGGTCTGATTTT 60.745 57.895 9.78 0.00 0.00 1.82
176 177 2.125106 GCGGCGGAGGTCTGATTT 60.125 61.111 9.78 0.00 0.00 2.17
177 178 3.077556 AGCGGCGGAGGTCTGATT 61.078 61.111 9.78 0.00 0.00 2.57
178 179 3.532155 GAGCGGCGGAGGTCTGAT 61.532 66.667 9.78 0.00 35.89 2.90
205 206 3.683937 AGCAACCACGGCAATGCC 61.684 61.111 15.52 15.52 46.75 4.40
206 207 2.431260 CAGCAACCACGGCAATGC 60.431 61.111 0.00 0.00 39.06 3.56
207 208 2.431260 GCAGCAACCACGGCAATG 60.431 61.111 0.00 0.00 0.00 2.82
208 209 3.683937 GGCAGCAACCACGGCAAT 61.684 61.111 0.00 0.00 31.84 3.56
210 211 4.972733 ATGGCAGCAACCACGGCA 62.973 61.111 0.00 0.00 44.17 5.69
211 212 4.424566 CATGGCAGCAACCACGGC 62.425 66.667 0.00 0.00 44.17 5.68
212 213 2.203972 CTTCATGGCAGCAACCACGG 62.204 60.000 0.00 0.00 44.17 4.94
213 214 1.210931 CTTCATGGCAGCAACCACG 59.789 57.895 0.00 0.00 44.17 4.94
214 215 1.080298 GCTTCATGGCAGCAACCAC 60.080 57.895 11.68 0.00 44.17 4.16
215 216 2.277591 GGCTTCATGGCAGCAACCA 61.278 57.895 16.72 0.00 45.82 3.67
216 217 2.575461 GGCTTCATGGCAGCAACC 59.425 61.111 16.72 0.00 39.21 3.77
217 218 2.180017 CGGCTTCATGGCAGCAAC 59.820 61.111 16.72 3.16 39.21 4.17
221 222 2.768492 GGAAGCGGCTTCATGGCAG 61.768 63.158 35.62 0.00 41.77 4.85
222 223 2.751436 GGAAGCGGCTTCATGGCA 60.751 61.111 35.62 0.00 41.77 4.92
223 224 2.751436 TGGAAGCGGCTTCATGGC 60.751 61.111 35.62 22.44 41.77 4.40
224 225 2.753966 CGTGGAAGCGGCTTCATGG 61.754 63.158 35.62 22.72 41.77 3.66
225 226 1.741401 TCGTGGAAGCGGCTTCATG 60.741 57.895 35.62 26.62 41.77 3.07
226 227 1.741770 GTCGTGGAAGCGGCTTCAT 60.742 57.895 35.62 8.76 41.77 2.57
227 228 2.357034 GTCGTGGAAGCGGCTTCA 60.357 61.111 35.62 22.59 41.77 3.02
228 229 3.479269 CGTCGTGGAAGCGGCTTC 61.479 66.667 29.87 29.87 39.52 3.86
229 230 3.296709 ATCGTCGTGGAAGCGGCTT 62.297 57.895 16.36 16.36 33.90 4.35
230 231 3.760035 ATCGTCGTGGAAGCGGCT 61.760 61.111 0.00 0.00 33.90 5.52
231 232 3.554692 CATCGTCGTGGAAGCGGC 61.555 66.667 0.00 0.00 0.00 6.53
232 233 2.885644 CCATCGTCGTGGAAGCGG 60.886 66.667 7.78 0.00 42.02 5.52
233 234 2.607668 TAGCCATCGTCGTGGAAGCG 62.608 60.000 15.29 0.00 42.02 4.68
234 235 0.872021 CTAGCCATCGTCGTGGAAGC 60.872 60.000 15.29 3.47 42.02 3.86
235 236 0.456221 ACTAGCCATCGTCGTGGAAG 59.544 55.000 15.29 13.13 42.02 3.46
236 237 0.172578 CACTAGCCATCGTCGTGGAA 59.827 55.000 15.29 4.44 42.02 3.53
237 238 0.963856 ACACTAGCCATCGTCGTGGA 60.964 55.000 15.29 0.00 42.02 4.02
238 239 0.802222 CACACTAGCCATCGTCGTGG 60.802 60.000 8.85 8.85 42.35 4.94
239 240 0.802222 CCACACTAGCCATCGTCGTG 60.802 60.000 0.00 0.00 0.00 4.35
240 241 1.248785 ACCACACTAGCCATCGTCGT 61.249 55.000 0.00 0.00 0.00 4.34
241 242 0.108804 AACCACACTAGCCATCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
242 243 1.641577 GAACCACACTAGCCATCGTC 58.358 55.000 0.00 0.00 0.00 4.20
243 244 0.249398 GGAACCACACTAGCCATCGT 59.751 55.000 0.00 0.00 0.00 3.73
244 245 0.537188 AGGAACCACACTAGCCATCG 59.463 55.000 0.00 0.00 0.00 3.84
245 246 1.834263 AGAGGAACCACACTAGCCATC 59.166 52.381 0.00 0.00 0.00 3.51
246 247 1.834263 GAGAGGAACCACACTAGCCAT 59.166 52.381 0.00 0.00 0.00 4.40
247 248 1.267121 GAGAGGAACCACACTAGCCA 58.733 55.000 0.00 0.00 0.00 4.75
248 249 0.537653 GGAGAGGAACCACACTAGCC 59.462 60.000 0.00 0.00 0.00 3.93
249 250 0.173708 CGGAGAGGAACCACACTAGC 59.826 60.000 0.00 0.00 0.00 3.42
250 251 0.173708 GCGGAGAGGAACCACACTAG 59.826 60.000 0.00 0.00 0.00 2.57
251 252 1.592400 CGCGGAGAGGAACCACACTA 61.592 60.000 0.00 0.00 0.00 2.74
252 253 2.932234 CGCGGAGAGGAACCACACT 61.932 63.158 0.00 0.00 0.00 3.55
253 254 2.432628 CGCGGAGAGGAACCACAC 60.433 66.667 0.00 0.00 0.00 3.82
254 255 2.599281 TCGCGGAGAGGAACCACA 60.599 61.111 6.13 0.00 0.00 4.17
255 256 2.126031 GTCGCGGAGAGGAACCAC 60.126 66.667 6.13 0.00 0.00 4.16
256 257 3.379445 GGTCGCGGAGAGGAACCA 61.379 66.667 6.13 0.00 0.00 3.67
257 258 4.144703 GGGTCGCGGAGAGGAACC 62.145 72.222 6.13 3.96 31.90 3.62
258 259 4.144703 GGGGTCGCGGAGAGGAAC 62.145 72.222 6.13 0.00 0.00 3.62
274 275 0.473886 ATAGGGTGGATCGAAGGGGG 60.474 60.000 0.00 0.00 0.00 5.40
275 276 1.348036 GAATAGGGTGGATCGAAGGGG 59.652 57.143 0.00 0.00 0.00 4.79
276 277 1.000955 CGAATAGGGTGGATCGAAGGG 59.999 57.143 0.00 0.00 37.48 3.95
277 278 1.687123 ACGAATAGGGTGGATCGAAGG 59.313 52.381 0.64 0.00 38.59 3.46
278 279 2.288273 GGACGAATAGGGTGGATCGAAG 60.288 54.545 0.64 0.00 38.59 3.79
279 280 1.684983 GGACGAATAGGGTGGATCGAA 59.315 52.381 0.64 0.00 38.59 3.71
280 281 1.325355 GGACGAATAGGGTGGATCGA 58.675 55.000 0.64 0.00 38.59 3.59
281 282 0.317479 GGGACGAATAGGGTGGATCG 59.683 60.000 0.00 0.00 40.90 3.69
282 283 0.685660 GGGGACGAATAGGGTGGATC 59.314 60.000 0.00 0.00 0.00 3.36
283 284 0.030501 TGGGGACGAATAGGGTGGAT 60.031 55.000 0.00 0.00 0.00 3.41
284 285 0.030501 ATGGGGACGAATAGGGTGGA 60.031 55.000 0.00 0.00 0.00 4.02
285 286 0.108585 CATGGGGACGAATAGGGTGG 59.891 60.000 0.00 0.00 0.00 4.61
286 287 0.108585 CCATGGGGACGAATAGGGTG 59.891 60.000 2.85 0.00 35.59 4.61
287 288 1.705997 GCCATGGGGACGAATAGGGT 61.706 60.000 15.13 0.00 35.59 4.34
288 289 1.073199 GCCATGGGGACGAATAGGG 59.927 63.158 15.13 0.00 35.59 3.53
289 290 1.301716 CGCCATGGGGACGAATAGG 60.302 63.158 23.98 0.00 36.29 2.57
290 291 0.600255 GACGCCATGGGGACGAATAG 60.600 60.000 33.50 0.00 37.22 1.73
291 292 1.444250 GACGCCATGGGGACGAATA 59.556 57.895 33.50 0.00 37.22 1.75
292 293 2.189521 GACGCCATGGGGACGAAT 59.810 61.111 33.50 12.23 37.22 3.34
293 294 4.444838 CGACGCCATGGGGACGAA 62.445 66.667 37.17 0.00 45.10 3.85
295 296 3.733344 AATCGACGCCATGGGGACG 62.733 63.158 35.53 35.53 44.14 4.79
296 297 1.436983 GAAATCGACGCCATGGGGAC 61.437 60.000 33.50 25.93 35.59 4.46
297 298 1.153249 GAAATCGACGCCATGGGGA 60.153 57.895 33.50 13.37 35.59 4.81
298 299 0.105964 TAGAAATCGACGCCATGGGG 59.894 55.000 26.22 26.22 37.18 4.96
299 300 1.948104 TTAGAAATCGACGCCATGGG 58.052 50.000 15.13 6.26 0.00 4.00
300 301 4.552166 ATTTTAGAAATCGACGCCATGG 57.448 40.909 7.63 7.63 0.00 3.66
301 302 5.331902 ACAATTTTAGAAATCGACGCCATG 58.668 37.500 0.00 0.00 0.00 3.66
302 303 5.560966 ACAATTTTAGAAATCGACGCCAT 57.439 34.783 0.00 0.00 0.00 4.40
303 304 4.434989 CGACAATTTTAGAAATCGACGCCA 60.435 41.667 0.00 0.00 0.00 5.69
304 305 4.019867 CGACAATTTTAGAAATCGACGCC 58.980 43.478 0.00 0.00 0.00 5.68
305 306 3.473902 GCGACAATTTTAGAAATCGACGC 59.526 43.478 5.72 5.72 35.06 5.19
306 307 4.882447 AGCGACAATTTTAGAAATCGACG 58.118 39.130 0.00 0.00 0.00 5.12
307 308 5.445014 CGAAGCGACAATTTTAGAAATCGAC 59.555 40.000 0.00 0.00 0.00 4.20
308 309 5.547341 CGAAGCGACAATTTTAGAAATCGA 58.453 37.500 0.00 0.00 0.00 3.59
309 310 5.817117 CGAAGCGACAATTTTAGAAATCG 57.183 39.130 0.00 0.00 0.00 3.34
331 332 4.821589 CTCTCGGTTGAGCGGGGC 62.822 72.222 2.37 0.00 42.26 5.80
332 333 4.148825 CCTCTCGGTTGAGCGGGG 62.149 72.222 2.37 0.16 42.34 5.73
333 334 3.068691 TCCTCTCGGTTGAGCGGG 61.069 66.667 2.57 0.00 45.43 6.13
334 335 2.492090 CTCCTCTCGGTTGAGCGG 59.508 66.667 2.57 0.00 46.51 5.52
335 336 1.595993 TTCCTCCTCTCGGTTGAGCG 61.596 60.000 0.00 0.00 42.26 5.03
336 337 0.608640 TTTCCTCCTCTCGGTTGAGC 59.391 55.000 0.00 0.00 42.26 4.26
337 338 3.402628 TTTTTCCTCCTCTCGGTTGAG 57.597 47.619 0.00 0.00 43.99 3.02
355 356 1.314730 ATGTTCCCTCGCACGTTTTT 58.685 45.000 0.00 0.00 0.00 1.94
356 357 2.172851 TATGTTCCCTCGCACGTTTT 57.827 45.000 0.00 0.00 0.00 2.43
357 358 1.802365 GTTATGTTCCCTCGCACGTTT 59.198 47.619 0.00 0.00 0.00 3.60
358 359 1.270412 TGTTATGTTCCCTCGCACGTT 60.270 47.619 0.00 0.00 0.00 3.99
359 360 0.319083 TGTTATGTTCCCTCGCACGT 59.681 50.000 0.00 0.00 0.00 4.49
360 361 1.593006 GATGTTATGTTCCCTCGCACG 59.407 52.381 0.00 0.00 0.00 5.34
361 362 1.593006 CGATGTTATGTTCCCTCGCAC 59.407 52.381 0.00 0.00 0.00 5.34
362 363 1.472552 CCGATGTTATGTTCCCTCGCA 60.473 52.381 0.00 0.00 0.00 5.10
363 364 1.217882 CCGATGTTATGTTCCCTCGC 58.782 55.000 0.00 0.00 0.00 5.03
364 365 1.217882 GCCGATGTTATGTTCCCTCG 58.782 55.000 0.00 0.00 0.00 4.63
365 366 1.202486 TCGCCGATGTTATGTTCCCTC 60.202 52.381 0.00 0.00 0.00 4.30
366 367 0.828022 TCGCCGATGTTATGTTCCCT 59.172 50.000 0.00 0.00 0.00 4.20
367 368 1.329599 GTTCGCCGATGTTATGTTCCC 59.670 52.381 0.00 0.00 0.00 3.97
368 369 2.277084 AGTTCGCCGATGTTATGTTCC 58.723 47.619 0.00 0.00 0.00 3.62
369 370 2.927477 TGAGTTCGCCGATGTTATGTTC 59.073 45.455 0.00 0.00 0.00 3.18
370 371 2.671396 GTGAGTTCGCCGATGTTATGTT 59.329 45.455 0.00 0.00 0.00 2.71
371 372 2.268298 GTGAGTTCGCCGATGTTATGT 58.732 47.619 0.00 0.00 0.00 2.29
372 373 1.593006 GGTGAGTTCGCCGATGTTATG 59.407 52.381 0.00 0.00 36.72 1.90
373 374 1.935933 GGTGAGTTCGCCGATGTTAT 58.064 50.000 0.00 0.00 36.72 1.89
374 375 3.429043 GGTGAGTTCGCCGATGTTA 57.571 52.632 0.00 0.00 36.72 2.41
375 376 4.278956 GGTGAGTTCGCCGATGTT 57.721 55.556 0.00 0.00 36.72 2.71
381 382 2.582498 CGATCGGGTGAGTTCGCC 60.582 66.667 7.38 3.08 45.51 5.54
382 383 2.582498 CCGATCGGGTGAGTTCGC 60.582 66.667 26.95 0.00 33.46 4.70
383 384 1.064296 CTCCGATCGGGTGAGTTCG 59.936 63.158 32.79 5.07 37.00 3.95
384 385 0.531200 AACTCCGATCGGGTGAGTTC 59.469 55.000 32.79 0.00 43.87 3.01
385 386 2.667348 AACTCCGATCGGGTGAGTT 58.333 52.632 32.79 28.83 42.80 3.01
386 387 1.890894 CAACTCCGATCGGGTGAGT 59.109 57.895 32.79 25.13 40.94 3.41
387 388 1.519455 GCAACTCCGATCGGGTGAG 60.519 63.158 32.79 24.47 37.00 3.51
388 389 2.577059 GCAACTCCGATCGGGTGA 59.423 61.111 32.79 14.04 37.00 4.02
389 390 2.511600 GGCAACTCCGATCGGGTG 60.512 66.667 32.79 26.36 37.00 4.61
412 413 2.841988 ATCCCTCTGCTCCTCGGC 60.842 66.667 0.00 0.00 0.00 5.54
413 414 2.206536 GGATCCCTCTGCTCCTCGG 61.207 68.421 0.00 0.00 0.00 4.63
414 415 2.560119 CGGATCCCTCTGCTCCTCG 61.560 68.421 6.06 0.00 0.00 4.63
415 416 1.152652 TCGGATCCCTCTGCTCCTC 60.153 63.158 6.06 0.00 0.00 3.71
416 417 1.152567 CTCGGATCCCTCTGCTCCT 60.153 63.158 6.06 0.00 0.00 3.69
417 418 1.152652 TCTCGGATCCCTCTGCTCC 60.153 63.158 6.06 0.00 0.00 4.70
418 419 1.178534 CCTCTCGGATCCCTCTGCTC 61.179 65.000 6.06 0.00 0.00 4.26
419 420 1.152567 CCTCTCGGATCCCTCTGCT 60.153 63.158 6.06 0.00 0.00 4.24
420 421 2.206536 CCCTCTCGGATCCCTCTGC 61.207 68.421 6.06 0.00 0.00 4.26
421 422 1.532794 CCCCTCTCGGATCCCTCTG 60.533 68.421 6.06 0.00 0.00 3.35
422 423 1.701757 TCCCCTCTCGGATCCCTCT 60.702 63.158 6.06 0.00 0.00 3.69
423 424 1.228737 CTCCCCTCTCGGATCCCTC 60.229 68.421 6.06 0.00 0.00 4.30
424 425 0.701659 TACTCCCCTCTCGGATCCCT 60.702 60.000 6.06 0.00 0.00 4.20
425 426 0.251430 CTACTCCCCTCTCGGATCCC 60.251 65.000 6.06 0.00 0.00 3.85
426 427 0.896479 GCTACTCCCCTCTCGGATCC 60.896 65.000 0.00 0.00 0.00 3.36
427 428 0.896479 GGCTACTCCCCTCTCGGATC 60.896 65.000 0.00 0.00 0.00 3.36
428 429 1.154221 GGCTACTCCCCTCTCGGAT 59.846 63.158 0.00 0.00 0.00 4.18
429 430 2.601868 GGCTACTCCCCTCTCGGA 59.398 66.667 0.00 0.00 0.00 4.55
430 431 2.907917 CGGCTACTCCCCTCTCGG 60.908 72.222 0.00 0.00 0.00 4.63
431 432 2.124236 ACGGCTACTCCCCTCTCG 60.124 66.667 0.00 0.00 0.00 4.04
432 433 0.820482 GAGACGGCTACTCCCCTCTC 60.820 65.000 0.00 0.00 31.85 3.20
433 434 1.227946 GAGACGGCTACTCCCCTCT 59.772 63.158 0.00 0.00 31.85 3.69
434 435 1.829096 GGAGACGGCTACTCCCCTC 60.829 68.421 13.44 0.00 45.64 4.30
435 436 2.279408 GGAGACGGCTACTCCCCT 59.721 66.667 13.44 0.00 45.64 4.79
454 455 4.338710 TGGGGTTCGCGGGAAAGG 62.339 66.667 17.22 0.00 33.05 3.11
455 456 3.053896 GTGGGGTTCGCGGGAAAG 61.054 66.667 17.22 0.00 33.05 2.62
456 457 4.646877 GGTGGGGTTCGCGGGAAA 62.647 66.667 17.22 0.00 33.05 3.13
471 472 4.626402 TTCGTCCTCCACCCCGGT 62.626 66.667 0.00 0.00 35.57 5.28
472 473 3.771160 CTTCGTCCTCCACCCCGG 61.771 72.222 0.00 0.00 0.00 5.73
473 474 3.771160 CCTTCGTCCTCCACCCCG 61.771 72.222 0.00 0.00 0.00 5.73
474 475 3.400054 CCCTTCGTCCTCCACCCC 61.400 72.222 0.00 0.00 0.00 4.95
475 476 3.400054 CCCCTTCGTCCTCCACCC 61.400 72.222 0.00 0.00 0.00 4.61
476 477 1.272554 ATTCCCCTTCGTCCTCCACC 61.273 60.000 0.00 0.00 0.00 4.61
477 478 0.107654 CATTCCCCTTCGTCCTCCAC 60.108 60.000 0.00 0.00 0.00 4.02
478 479 0.252513 TCATTCCCCTTCGTCCTCCA 60.253 55.000 0.00 0.00 0.00 3.86
479 480 0.466124 CTCATTCCCCTTCGTCCTCC 59.534 60.000 0.00 0.00 0.00 4.30
480 481 0.466124 CCTCATTCCCCTTCGTCCTC 59.534 60.000 0.00 0.00 0.00 3.71
481 482 0.042731 TCCTCATTCCCCTTCGTCCT 59.957 55.000 0.00 0.00 0.00 3.85
482 483 0.909623 TTCCTCATTCCCCTTCGTCC 59.090 55.000 0.00 0.00 0.00 4.79
483 484 1.831736 TCTTCCTCATTCCCCTTCGTC 59.168 52.381 0.00 0.00 0.00 4.20
484 485 1.834263 CTCTTCCTCATTCCCCTTCGT 59.166 52.381 0.00 0.00 0.00 3.85
485 486 2.111384 TCTCTTCCTCATTCCCCTTCG 58.889 52.381 0.00 0.00 0.00 3.79
486 487 3.264450 TGTTCTCTTCCTCATTCCCCTTC 59.736 47.826 0.00 0.00 0.00 3.46
487 488 3.260205 TGTTCTCTTCCTCATTCCCCTT 58.740 45.455 0.00 0.00 0.00 3.95
488 489 2.921221 TGTTCTCTTCCTCATTCCCCT 58.079 47.619 0.00 0.00 0.00 4.79
489 490 3.721087 TTGTTCTCTTCCTCATTCCCC 57.279 47.619 0.00 0.00 0.00 4.81
490 491 4.398319 TGTTTGTTCTCTTCCTCATTCCC 58.602 43.478 0.00 0.00 0.00 3.97
491 492 4.083057 GCTGTTTGTTCTCTTCCTCATTCC 60.083 45.833 0.00 0.00 0.00 3.01
492 493 4.516698 TGCTGTTTGTTCTCTTCCTCATTC 59.483 41.667 0.00 0.00 0.00 2.67
493 494 4.276926 GTGCTGTTTGTTCTCTTCCTCATT 59.723 41.667 0.00 0.00 0.00 2.57
494 495 3.817647 GTGCTGTTTGTTCTCTTCCTCAT 59.182 43.478 0.00 0.00 0.00 2.90
495 496 3.206150 GTGCTGTTTGTTCTCTTCCTCA 58.794 45.455 0.00 0.00 0.00 3.86
496 497 2.550180 GGTGCTGTTTGTTCTCTTCCTC 59.450 50.000 0.00 0.00 0.00 3.71
497 498 2.576615 GGTGCTGTTTGTTCTCTTCCT 58.423 47.619 0.00 0.00 0.00 3.36
498 499 1.264288 CGGTGCTGTTTGTTCTCTTCC 59.736 52.381 0.00 0.00 0.00 3.46
499 500 1.334149 GCGGTGCTGTTTGTTCTCTTC 60.334 52.381 0.00 0.00 0.00 2.87
500 501 0.663153 GCGGTGCTGTTTGTTCTCTT 59.337 50.000 0.00 0.00 0.00 2.85
501 502 0.179045 AGCGGTGCTGTTTGTTCTCT 60.179 50.000 0.00 0.00 37.57 3.10
502 503 0.663153 AAGCGGTGCTGTTTGTTCTC 59.337 50.000 0.00 0.00 39.62 2.87
503 504 0.663153 GAAGCGGTGCTGTTTGTTCT 59.337 50.000 0.00 0.00 39.62 3.01
504 505 0.657368 CGAAGCGGTGCTGTTTGTTC 60.657 55.000 0.00 0.00 39.62 3.18
505 506 1.355210 CGAAGCGGTGCTGTTTGTT 59.645 52.632 0.00 0.00 39.62 2.83
506 507 2.542907 CCGAAGCGGTGCTGTTTGT 61.543 57.895 0.00 0.00 42.73 2.83
507 508 2.252260 CCGAAGCGGTGCTGTTTG 59.748 61.111 0.00 0.00 42.73 2.93
508 509 2.978010 CCCGAAGCGGTGCTGTTT 60.978 61.111 5.06 0.00 46.80 2.83
518 519 2.952310 AGGATATTTTTCTGCCCGAAGC 59.048 45.455 0.00 0.00 44.14 3.86
519 520 3.316308 CCAGGATATTTTTCTGCCCGAAG 59.684 47.826 0.00 0.00 32.21 3.79
520 521 3.287222 CCAGGATATTTTTCTGCCCGAA 58.713 45.455 0.00 0.00 0.00 4.30
521 522 2.422803 CCCAGGATATTTTTCTGCCCGA 60.423 50.000 0.00 0.00 0.00 5.14
522 523 1.956477 CCCAGGATATTTTTCTGCCCG 59.044 52.381 0.00 0.00 0.00 6.13
523 524 2.959030 GTCCCAGGATATTTTTCTGCCC 59.041 50.000 0.00 0.00 0.00 5.36
524 525 3.903467 AGTCCCAGGATATTTTTCTGCC 58.097 45.455 0.00 0.00 0.00 4.85
525 526 5.185828 ACAAAGTCCCAGGATATTTTTCTGC 59.814 40.000 0.00 0.00 0.00 4.26
526 527 6.840780 ACAAAGTCCCAGGATATTTTTCTG 57.159 37.500 0.00 0.00 0.00 3.02
527 528 7.855784 AAACAAAGTCCCAGGATATTTTTCT 57.144 32.000 0.00 0.00 0.00 2.52
528 529 8.902540 AAAAACAAAGTCCCAGGATATTTTTC 57.097 30.769 0.00 0.00 0.00 2.29
551 552 6.789959 TCCCAGGATATTTTTCCCTTCAAAAA 59.210 34.615 0.00 0.00 39.09 1.94
552 553 6.212589 GTCCCAGGATATTTTTCCCTTCAAAA 59.787 38.462 0.00 0.00 36.35 2.44
553 554 5.719563 GTCCCAGGATATTTTTCCCTTCAAA 59.280 40.000 0.00 0.00 36.35 2.69
554 555 5.016245 AGTCCCAGGATATTTTTCCCTTCAA 59.984 40.000 0.00 0.00 36.35 2.69
555 556 4.544152 AGTCCCAGGATATTTTTCCCTTCA 59.456 41.667 0.00 0.00 36.35 3.02
556 557 5.130705 AGTCCCAGGATATTTTTCCCTTC 57.869 43.478 0.00 0.00 36.35 3.46
557 558 6.668133 TTAGTCCCAGGATATTTTTCCCTT 57.332 37.500 0.00 0.00 36.35 3.95
558 559 6.865651 ATTAGTCCCAGGATATTTTTCCCT 57.134 37.500 0.00 0.00 36.35 4.20
559 560 7.563556 TCAAATTAGTCCCAGGATATTTTTCCC 59.436 37.037 0.00 0.00 36.35 3.97
560 561 8.533569 TCAAATTAGTCCCAGGATATTTTTCC 57.466 34.615 0.00 0.00 35.90 3.13
561 562 8.633561 CCTCAAATTAGTCCCAGGATATTTTTC 58.366 37.037 0.00 0.00 0.00 2.29
562 563 7.565029 CCCTCAAATTAGTCCCAGGATATTTTT 59.435 37.037 0.00 0.00 0.00 1.94
563 564 7.069344 CCCTCAAATTAGTCCCAGGATATTTT 58.931 38.462 0.00 0.00 0.00 1.82
564 565 6.412024 CCCCTCAAATTAGTCCCAGGATATTT 60.412 42.308 0.00 0.00 0.00 1.40
565 566 5.075067 CCCCTCAAATTAGTCCCAGGATATT 59.925 44.000 0.00 0.00 0.00 1.28
566 567 4.603610 CCCCTCAAATTAGTCCCAGGATAT 59.396 45.833 0.00 0.00 0.00 1.63
567 568 3.980698 CCCCTCAAATTAGTCCCAGGATA 59.019 47.826 0.00 0.00 0.00 2.59
568 569 2.785857 CCCCTCAAATTAGTCCCAGGAT 59.214 50.000 0.00 0.00 0.00 3.24
569 570 2.205342 CCCCTCAAATTAGTCCCAGGA 58.795 52.381 0.00 0.00 0.00 3.86
570 571 1.215423 CCCCCTCAAATTAGTCCCAGG 59.785 57.143 0.00 0.00 0.00 4.45
571 572 2.736670 CCCCCTCAAATTAGTCCCAG 57.263 55.000 0.00 0.00 0.00 4.45
588 589 2.674084 CGAAAGTCGAAACGCCCCC 61.674 63.158 0.00 0.00 43.74 5.40
589 590 2.858158 CGAAAGTCGAAACGCCCC 59.142 61.111 0.00 0.00 43.74 5.80
590 591 2.172659 GCGAAAGTCGAAACGCCC 59.827 61.111 13.11 0.00 43.74 6.13
593 594 0.501435 AACGAGCGAAAGTCGAAACG 59.499 50.000 1.05 6.03 43.74 3.60
594 595 2.640375 AAACGAGCGAAAGTCGAAAC 57.360 45.000 1.05 0.00 43.74 2.78
595 596 2.285950 CCAAAACGAGCGAAAGTCGAAA 60.286 45.455 1.05 0.00 43.74 3.46
596 597 1.259507 CCAAAACGAGCGAAAGTCGAA 59.740 47.619 1.05 0.00 43.74 3.71
597 598 0.856641 CCAAAACGAGCGAAAGTCGA 59.143 50.000 1.05 0.00 43.74 4.20
598 599 0.110823 CCCAAAACGAGCGAAAGTCG 60.111 55.000 0.00 0.00 43.89 4.18
599 600 0.237498 CCCCAAAACGAGCGAAAGTC 59.763 55.000 0.00 0.00 0.00 3.01
600 601 1.792118 GCCCCAAAACGAGCGAAAGT 61.792 55.000 0.00 0.00 0.00 2.66
601 602 1.081442 GCCCCAAAACGAGCGAAAG 60.081 57.895 0.00 0.00 0.00 2.62
602 603 2.557372 GGCCCCAAAACGAGCGAAA 61.557 57.895 0.00 0.00 0.00 3.46
603 604 2.981350 GGCCCCAAAACGAGCGAA 60.981 61.111 0.00 0.00 0.00 4.70
606 607 4.038080 CACGGCCCCAAAACGAGC 62.038 66.667 0.00 0.00 0.00 5.03
607 608 2.593436 ACACGGCCCCAAAACGAG 60.593 61.111 0.00 0.00 0.00 4.18
608 609 2.684192 ATCACACGGCCCCAAAACGA 62.684 55.000 0.00 0.00 0.00 3.85
609 610 2.195123 GATCACACGGCCCCAAAACG 62.195 60.000 0.00 0.00 0.00 3.60
610 611 1.584495 GATCACACGGCCCCAAAAC 59.416 57.895 0.00 0.00 0.00 2.43
611 612 1.969064 CGATCACACGGCCCCAAAA 60.969 57.895 0.00 0.00 0.00 2.44
612 613 2.359354 CGATCACACGGCCCCAAA 60.359 61.111 0.00 0.00 0.00 3.28
613 614 3.315140 TCGATCACACGGCCCCAA 61.315 61.111 0.00 0.00 0.00 4.12
614 615 4.077184 GTCGATCACACGGCCCCA 62.077 66.667 0.00 0.00 31.41 4.96
621 622 1.585521 CGCTACGGGTCGATCACAC 60.586 63.158 0.00 0.00 0.00 3.82
622 623 2.795973 CGCTACGGGTCGATCACA 59.204 61.111 0.00 0.00 0.00 3.58
623 624 2.654404 GCGCTACGGGTCGATCAC 60.654 66.667 0.00 0.00 0.00 3.06
624 625 4.246206 CGCGCTACGGGTCGATCA 62.246 66.667 5.56 0.00 38.44 2.92
640 641 3.613702 GTATCGTGTTCGGCGGCG 61.614 66.667 27.15 27.15 37.69 6.46
641 642 3.613702 CGTATCGTGTTCGGCGGC 61.614 66.667 7.21 0.00 37.69 6.53
642 643 0.041047 TATCGTATCGTGTTCGGCGG 60.041 55.000 7.21 0.00 37.69 6.13
643 644 1.959747 ATATCGTATCGTGTTCGGCG 58.040 50.000 0.00 0.00 37.69 6.46
644 645 3.732219 TGAAATATCGTATCGTGTTCGGC 59.268 43.478 0.00 0.00 37.69 5.54
645 646 4.381863 CCTGAAATATCGTATCGTGTTCGG 59.618 45.833 0.00 0.00 37.69 4.30
646 647 4.974275 ACCTGAAATATCGTATCGTGTTCG 59.026 41.667 0.00 0.00 38.55 3.95
647 648 6.085979 CGTACCTGAAATATCGTATCGTGTTC 59.914 42.308 0.00 0.00 0.00 3.18
648 649 5.911280 CGTACCTGAAATATCGTATCGTGTT 59.089 40.000 0.00 0.00 0.00 3.32
649 650 5.237127 TCGTACCTGAAATATCGTATCGTGT 59.763 40.000 0.00 0.00 0.00 4.49
650 651 5.682869 TCGTACCTGAAATATCGTATCGTG 58.317 41.667 0.00 0.00 0.00 4.35
651 652 5.929697 TCGTACCTGAAATATCGTATCGT 57.070 39.130 0.00 0.00 0.00 3.73
652 653 7.792383 AATTCGTACCTGAAATATCGTATCG 57.208 36.000 0.00 0.00 0.00 2.92
653 654 9.793245 CAAAATTCGTACCTGAAATATCGTATC 57.207 33.333 0.00 0.00 0.00 2.24
654 655 9.321562 ACAAAATTCGTACCTGAAATATCGTAT 57.678 29.630 0.00 0.00 0.00 3.06
655 656 8.706492 ACAAAATTCGTACCTGAAATATCGTA 57.294 30.769 0.00 0.00 0.00 3.43
656 657 7.201582 GGACAAAATTCGTACCTGAAATATCGT 60.202 37.037 0.00 0.00 0.00 3.73
657 658 7.123830 GGACAAAATTCGTACCTGAAATATCG 58.876 38.462 0.00 0.00 0.00 2.92
658 659 7.010738 TCGGACAAAATTCGTACCTGAAATATC 59.989 37.037 0.00 0.00 0.00 1.63
659 660 6.819649 TCGGACAAAATTCGTACCTGAAATAT 59.180 34.615 0.00 0.00 0.00 1.28
660 661 6.091169 GTCGGACAAAATTCGTACCTGAAATA 59.909 38.462 2.62 0.00 0.00 1.40
661 662 4.998672 TCGGACAAAATTCGTACCTGAAAT 59.001 37.500 0.00 0.00 0.00 2.17
662 663 4.211794 GTCGGACAAAATTCGTACCTGAAA 59.788 41.667 2.62 0.00 0.00 2.69
663 664 3.742369 GTCGGACAAAATTCGTACCTGAA 59.258 43.478 2.62 0.00 0.00 3.02
664 665 3.243805 TGTCGGACAAAATTCGTACCTGA 60.244 43.478 8.68 0.00 0.00 3.86
665 666 3.061322 TGTCGGACAAAATTCGTACCTG 58.939 45.455 8.68 0.00 0.00 4.00
666 667 3.062042 GTGTCGGACAAAATTCGTACCT 58.938 45.455 13.23 0.00 0.00 3.08
667 668 2.801679 TGTGTCGGACAAAATTCGTACC 59.198 45.455 13.23 0.00 0.00 3.34
668 669 3.663493 GCTGTGTCGGACAAAATTCGTAC 60.663 47.826 13.23 0.00 32.80 3.67
669 670 2.477375 GCTGTGTCGGACAAAATTCGTA 59.523 45.455 13.23 0.00 32.80 3.43
670 671 1.263217 GCTGTGTCGGACAAAATTCGT 59.737 47.619 13.23 0.00 32.80 3.85
671 672 1.262950 TGCTGTGTCGGACAAAATTCG 59.737 47.619 13.23 0.00 32.80 3.34
672 673 2.548057 TCTGCTGTGTCGGACAAAATTC 59.452 45.455 13.23 0.34 32.80 2.17
673 674 2.571212 TCTGCTGTGTCGGACAAAATT 58.429 42.857 13.23 0.00 32.80 1.82
674 675 2.254546 TCTGCTGTGTCGGACAAAAT 57.745 45.000 13.23 0.00 32.80 1.82
675 676 2.143122 GATCTGCTGTGTCGGACAAAA 58.857 47.619 13.23 3.52 32.80 2.44
676 677 1.795768 GATCTGCTGTGTCGGACAAA 58.204 50.000 13.23 6.62 32.80 2.83
677 678 0.388520 CGATCTGCTGTGTCGGACAA 60.389 55.000 13.23 2.86 32.80 3.18
678 679 1.212751 CGATCTGCTGTGTCGGACA 59.787 57.895 6.76 6.76 0.00 4.02
679 680 0.109272 TTCGATCTGCTGTGTCGGAC 60.109 55.000 16.19 0.00 36.14 4.79
680 681 0.109272 GTTCGATCTGCTGTGTCGGA 60.109 55.000 16.19 8.81 36.14 4.55
681 682 1.078759 GGTTCGATCTGCTGTGTCGG 61.079 60.000 16.19 4.13 36.14 4.79
682 683 1.406219 CGGTTCGATCTGCTGTGTCG 61.406 60.000 12.31 12.31 36.75 4.35
683 684 0.388649 ACGGTTCGATCTGCTGTGTC 60.389 55.000 2.12 0.00 0.00 3.67
684 685 0.885879 TACGGTTCGATCTGCTGTGT 59.114 50.000 2.12 0.00 0.00 3.72
685 686 1.269166 GTACGGTTCGATCTGCTGTG 58.731 55.000 2.12 0.00 0.00 3.66
686 687 0.179171 CGTACGGTTCGATCTGCTGT 60.179 55.000 7.57 0.24 0.00 4.40
687 688 0.179171 ACGTACGGTTCGATCTGCTG 60.179 55.000 21.06 0.00 0.00 4.41
688 689 0.179171 CACGTACGGTTCGATCTGCT 60.179 55.000 21.06 0.00 0.00 4.24
689 690 0.179181 TCACGTACGGTTCGATCTGC 60.179 55.000 21.06 0.00 0.00 4.26
690 691 1.811428 CTCACGTACGGTTCGATCTG 58.189 55.000 21.06 6.06 0.00 2.90
691 692 0.098376 GCTCACGTACGGTTCGATCT 59.902 55.000 21.06 0.00 0.00 2.75
700 701 4.767633 GAGTCCAGCTCACGTACG 57.232 61.111 15.01 15.01 43.58 3.67
727 728 0.248215 GATGCAAAATCCAGCGGTCG 60.248 55.000 0.00 0.00 0.00 4.79
750 752 7.713942 ACACCGTCCAGTTTATATAGATTTTCC 59.286 37.037 0.00 0.00 0.00 3.13
770 772 6.348704 CCCGTTTATTTTAGAATCAACACCGT 60.349 38.462 4.51 0.00 31.74 4.83
778 780 3.628942 ACCGCCCCGTTTATTTTAGAATC 59.371 43.478 0.00 0.00 0.00 2.52
779 781 3.379057 CACCGCCCCGTTTATTTTAGAAT 59.621 43.478 0.00 0.00 0.00 2.40
782 784 2.086094 ACACCGCCCCGTTTATTTTAG 58.914 47.619 0.00 0.00 0.00 1.85
784 786 1.000052 CAACACCGCCCCGTTTATTTT 60.000 47.619 0.00 0.00 0.00 1.82
785 787 0.599060 CAACACCGCCCCGTTTATTT 59.401 50.000 0.00 0.00 0.00 1.40
787 789 1.676303 CCAACACCGCCCCGTTTAT 60.676 57.895 0.00 0.00 0.00 1.40
788 790 2.281622 CCAACACCGCCCCGTTTA 60.282 61.111 0.00 0.00 0.00 2.01
789 791 4.192453 TCCAACACCGCCCCGTTT 62.192 61.111 0.00 0.00 0.00 3.60
790 792 4.941309 GTCCAACACCGCCCCGTT 62.941 66.667 0.00 0.00 0.00 4.44
816 818 1.951130 CCGATCTGGATCCGTTGCG 60.951 63.158 7.39 8.47 42.00 4.85
820 822 1.033574 GAAGACCGATCTGGATCCGT 58.966 55.000 7.39 0.00 42.00 4.69
821 823 0.315568 GGAAGACCGATCTGGATCCG 59.684 60.000 7.39 2.06 42.00 4.18
854 857 4.524802 ATCCTGCAAGATTTATGTGGGA 57.475 40.909 0.00 0.00 34.07 4.37
855 858 5.603170 AAATCCTGCAAGATTTATGTGGG 57.397 39.130 19.43 0.00 43.09 4.61
892 895 2.584608 CAGCTCGGGTGGGGTAAG 59.415 66.667 0.00 0.00 0.00 2.34
907 910 0.462581 TGGCAGGCTTTCTATCGCAG 60.463 55.000 0.00 0.00 0.00 5.18
978 2063 7.499563 TCCATACGTGCAAATAGGCTAATAAAA 59.500 33.333 0.00 0.00 34.04 1.52
997 2082 5.930569 CAGGCATGATATCCATATCCATACG 59.069 44.000 0.00 0.00 38.66 3.06
1026 2111 1.067142 CGTACTTACCTGCTGCCTTGA 60.067 52.381 0.00 0.00 0.00 3.02
1100 2187 8.523915 TGATTTATCATGCTTAACCTGATGTT 57.476 30.769 0.00 0.00 41.11 2.71
1108 2195 9.123709 TGAAACGTTTGATTTATCATGCTTAAC 57.876 29.630 20.10 0.00 36.56 2.01
1165 2253 6.531594 GGATTTACCATGCTTGCTAAAAGAAC 59.468 38.462 4.70 0.00 38.79 3.01
1183 2271 7.671495 AAAATTGAACATGGCAAGGATTTAC 57.329 32.000 0.00 0.00 0.00 2.01
1229 2317 6.200286 GTCGCGAGGATGACAATTATTTTAGA 59.800 38.462 10.24 0.00 35.20 2.10
1236 2324 2.951457 TGTCGCGAGGATGACAATTA 57.049 45.000 10.24 0.00 41.82 1.40
1250 2338 7.643528 TTGAGATGATAGATTATGTTGTCGC 57.356 36.000 0.00 0.00 0.00 5.19
1292 2382 7.461416 CGCTACAAATCAAACATCGGATTTTTC 60.461 37.037 0.00 0.00 40.68 2.29
1441 2538 7.657761 AGCACTAGCATTACCACTATATTGAAC 59.342 37.037 0.00 0.00 45.49 3.18
1702 2807 4.385447 TCCGTACGAAGTTTTATTTCACGG 59.615 41.667 18.76 0.00 37.78 4.94
2019 3131 4.443725 CGCATCTCTATGTACTTGCAGAAG 59.556 45.833 0.00 0.00 35.38 2.85
2251 3364 8.908786 AAATCTGACCGATGTAATATTCACAT 57.091 30.769 9.10 9.10 39.31 3.21
2263 3376 3.059597 GTCCGCATAAAATCTGACCGATG 60.060 47.826 0.00 0.00 31.20 3.84
2449 3572 7.119709 AGCAGTGTATGTAACCATGTACATA 57.880 36.000 8.32 10.59 41.79 2.29
2503 3626 6.263842 TCTTGTTTCTGCACAAATCTCTCAAT 59.736 34.615 0.00 0.00 36.22 2.57
2537 3660 5.220548 CCTGATTAGTTTGTCTCATCTTGCG 60.221 44.000 0.00 0.00 30.54 4.85
2542 3665 5.669477 AGCTCCTGATTAGTTTGTCTCATC 58.331 41.667 0.00 0.00 0.00 2.92
2551 3674 5.102953 TGTTGCATAGCTCCTGATTAGTT 57.897 39.130 0.00 0.00 0.00 2.24
2568 3691 2.354510 TGTGTACTTGCAGAACTGTTGC 59.645 45.455 0.00 0.00 41.86 4.17
2615 3738 1.522668 CCAACGACAATGGCAGAGAA 58.477 50.000 0.00 0.00 0.00 2.87
2629 3752 2.357637 ACACAATTTCAGTGTCCCAACG 59.642 45.455 0.00 0.00 46.57 4.10
2641 3764 3.191162 TGTGCCTCATGCTACACAATTTC 59.809 43.478 10.76 0.00 39.91 2.17
2805 3928 4.641396 GCAGTGGCCATATAGTATTCACA 58.359 43.478 9.72 0.00 0.00 3.58
2940 4356 0.886938 TCGCTGCGGGAGAGAGATAG 60.887 60.000 23.03 0.00 0.00 2.08
2969 4385 4.195225 TGTTGTGCACATATCTAACGGA 57.805 40.909 22.39 0.00 0.00 4.69
2972 4388 5.817296 TGAGGATGTTGTGCACATATCTAAC 59.183 40.000 28.78 21.00 46.96 2.34
2996 4412 1.173913 GTTGCCGCAACCTAGGAAAT 58.826 50.000 23.26 0.00 38.30 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.