Multiple sequence alignment - TraesCS2D01G351900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G351900 chr2D 100.000 3064 0 0 1 3064 450233865 450236928 0.000000e+00 5659.0
1 TraesCS2D01G351900 chr2B 91.907 2496 77 32 368 2776 530305904 530308361 0.000000e+00 3374.0
2 TraesCS2D01G351900 chr2B 87.500 280 23 4 2771 3049 530309135 530309403 2.290000e-81 313.0
3 TraesCS2D01G351900 chr2A 95.675 1711 50 4 358 2062 594579656 594581348 0.000000e+00 2728.0
4 TraesCS2D01G351900 chr2A 82.183 623 56 30 2204 2809 594581490 594582074 4.590000e-133 484.0
5 TraesCS2D01G351900 chr2A 94.643 112 6 0 2060 2171 594581381 594581492 1.130000e-39 174.0
6 TraesCS2D01G351900 chr2A 93.182 44 1 2 2925 2967 621857460 621857502 2.550000e-06 63.9
7 TraesCS2D01G351900 chr6D 77.614 612 107 19 1031 1629 284849853 284850447 8.130000e-91 344.0
8 TraesCS2D01G351900 chr6D 86.170 188 21 5 1765 1951 110443613 110443430 6.700000e-47 198.0
9 TraesCS2D01G351900 chr6B 76.998 613 109 25 1031 1629 445852386 445852980 3.810000e-84 322.0
10 TraesCS2D01G351900 chr6B 88.485 165 16 3 1787 1950 198985188 198985026 2.410000e-46 196.0
11 TraesCS2D01G351900 chr6A 76.998 613 109 21 1031 1629 405166893 405167487 3.810000e-84 322.0
12 TraesCS2D01G351900 chr6A 87.234 188 17 7 1765 1950 134948360 134948178 1.110000e-49 207.0
13 TraesCS2D01G351900 chr7D 82.759 290 43 6 1 286 170628440 170628726 5.070000e-63 252.0
14 TraesCS2D01G351900 chr7D 86.420 162 16 6 1788 1948 594729862 594729706 4.060000e-39 172.0
15 TraesCS2D01G351900 chr5A 84.091 220 33 2 1 220 93186881 93187098 8.610000e-51 211.0
16 TraesCS2D01G351900 chr5A 90.385 52 3 2 2920 2970 580186916 580186966 1.970000e-07 67.6
17 TraesCS2D01G351900 chr7B 86.957 161 17 4 1788 1948 667070575 667070419 8.730000e-41 178.0
18 TraesCS2D01G351900 chr7A 86.420 162 16 6 1788 1948 686937962 686938118 4.060000e-39 172.0
19 TraesCS2D01G351900 chr7A 93.333 45 3 0 2932 2976 485742943 485742987 1.970000e-07 67.6
20 TraesCS2D01G351900 chr3B 78.707 263 51 4 29 288 144786787 144787047 1.460000e-38 171.0
21 TraesCS2D01G351900 chr5D 85.507 69 8 2 79 146 528214113 528214180 1.520000e-08 71.3
22 TraesCS2D01G351900 chr1D 87.097 62 6 2 2899 2959 491710828 491710888 5.480000e-08 69.4
23 TraesCS2D01G351900 chr3A 93.333 45 3 0 2932 2976 218727088 218727132 1.970000e-07 67.6
24 TraesCS2D01G351900 chr1A 90.385 52 4 1 2926 2976 42645435 42645384 1.970000e-07 67.6
25 TraesCS2D01G351900 chr4D 95.238 42 1 1 2925 2965 16923041 16923000 7.090000e-07 65.8
26 TraesCS2D01G351900 chr4A 84.000 75 2 9 2891 2958 583526486 583526557 2.550000e-06 63.9
27 TraesCS2D01G351900 chr1B 91.304 46 4 0 2930 2975 156597651 156597606 2.550000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G351900 chr2D 450233865 450236928 3063 False 5659.000000 5659 100.000000 1 3064 1 chr2D.!!$F1 3063
1 TraesCS2D01G351900 chr2B 530305904 530309403 3499 False 1843.500000 3374 89.703500 368 3049 2 chr2B.!!$F1 2681
2 TraesCS2D01G351900 chr2A 594579656 594582074 2418 False 1128.666667 2728 90.833667 358 2809 3 chr2A.!!$F2 2451
3 TraesCS2D01G351900 chr6D 284849853 284850447 594 False 344.000000 344 77.614000 1031 1629 1 chr6D.!!$F1 598
4 TraesCS2D01G351900 chr6B 445852386 445852980 594 False 322.000000 322 76.998000 1031 1629 1 chr6B.!!$F1 598
5 TraesCS2D01G351900 chr6A 405166893 405167487 594 False 322.000000 322 76.998000 1031 1629 1 chr6A.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 635 0.099968 GGCCTAATTTTTCCGGCGAC 59.900 55.0 9.3 0.0 43.38 5.19 F
619 636 0.806241 GCCTAATTTTTCCGGCGACA 59.194 50.0 9.3 0.0 32.22 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 1989 0.105760 ATCTCCTCGTGCTCCTCCAT 60.106 55.0 0.0 0.0 0.0 3.41 R
2223 2300 0.109272 TTAGCCAGCTCGTGAAGTCG 60.109 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.190643 GAGAGAGTGGTGAGGAAGGG 58.809 60.000 0.00 0.00 0.00 3.95
20 21 0.787084 AGAGAGTGGTGAGGAAGGGA 59.213 55.000 0.00 0.00 0.00 4.20
21 22 1.190643 GAGAGTGGTGAGGAAGGGAG 58.809 60.000 0.00 0.00 0.00 4.30
22 23 0.252467 AGAGTGGTGAGGAAGGGAGG 60.252 60.000 0.00 0.00 0.00 4.30
23 24 0.545548 GAGTGGTGAGGAAGGGAGGT 60.546 60.000 0.00 0.00 0.00 3.85
24 25 0.838122 AGTGGTGAGGAAGGGAGGTG 60.838 60.000 0.00 0.00 0.00 4.00
25 26 0.836400 GTGGTGAGGAAGGGAGGTGA 60.836 60.000 0.00 0.00 0.00 4.02
26 27 0.545309 TGGTGAGGAAGGGAGGTGAG 60.545 60.000 0.00 0.00 0.00 3.51
27 28 1.268283 GGTGAGGAAGGGAGGTGAGG 61.268 65.000 0.00 0.00 0.00 3.86
28 29 0.252284 GTGAGGAAGGGAGGTGAGGA 60.252 60.000 0.00 0.00 0.00 3.71
29 30 0.719015 TGAGGAAGGGAGGTGAGGAT 59.281 55.000 0.00 0.00 0.00 3.24
30 31 1.937350 TGAGGAAGGGAGGTGAGGATA 59.063 52.381 0.00 0.00 0.00 2.59
31 32 2.317900 TGAGGAAGGGAGGTGAGGATAA 59.682 50.000 0.00 0.00 0.00 1.75
32 33 3.051032 TGAGGAAGGGAGGTGAGGATAAT 60.051 47.826 0.00 0.00 0.00 1.28
33 34 3.977326 GAGGAAGGGAGGTGAGGATAATT 59.023 47.826 0.00 0.00 0.00 1.40
34 35 3.718956 AGGAAGGGAGGTGAGGATAATTG 59.281 47.826 0.00 0.00 0.00 2.32
35 36 3.716872 GGAAGGGAGGTGAGGATAATTGA 59.283 47.826 0.00 0.00 0.00 2.57
36 37 4.352298 GGAAGGGAGGTGAGGATAATTGAT 59.648 45.833 0.00 0.00 0.00 2.57
37 38 4.989875 AGGGAGGTGAGGATAATTGATG 57.010 45.455 0.00 0.00 0.00 3.07
38 39 4.570926 AGGGAGGTGAGGATAATTGATGA 58.429 43.478 0.00 0.00 0.00 2.92
39 40 4.349342 AGGGAGGTGAGGATAATTGATGAC 59.651 45.833 0.00 0.00 0.00 3.06
40 41 4.310769 GGAGGTGAGGATAATTGATGACG 58.689 47.826 0.00 0.00 0.00 4.35
41 42 4.039245 GGAGGTGAGGATAATTGATGACGA 59.961 45.833 0.00 0.00 0.00 4.20
42 43 4.950050 AGGTGAGGATAATTGATGACGAC 58.050 43.478 0.00 0.00 0.00 4.34
43 44 4.405680 AGGTGAGGATAATTGATGACGACA 59.594 41.667 0.00 0.00 0.00 4.35
44 45 4.508124 GGTGAGGATAATTGATGACGACAC 59.492 45.833 0.00 0.00 0.00 3.67
45 46 4.207224 GTGAGGATAATTGATGACGACACG 59.793 45.833 0.00 0.00 0.00 4.49
46 47 4.142249 TGAGGATAATTGATGACGACACGT 60.142 41.667 0.00 0.00 45.10 4.49
57 58 1.849097 ACGACACGTCTGGAAAGAAC 58.151 50.000 0.00 0.00 33.69 3.01
58 59 1.135527 ACGACACGTCTGGAAAGAACA 59.864 47.619 0.00 0.00 33.69 3.18
59 60 1.521423 CGACACGTCTGGAAAGAACAC 59.479 52.381 0.00 0.00 0.00 3.32
60 61 1.521423 GACACGTCTGGAAAGAACACG 59.479 52.381 0.00 0.00 36.54 4.49
61 62 1.135527 ACACGTCTGGAAAGAACACGA 59.864 47.619 0.00 0.00 34.55 4.35
62 63 1.521423 CACGTCTGGAAAGAACACGAC 59.479 52.381 0.00 0.00 34.55 4.34
63 64 1.407979 ACGTCTGGAAAGAACACGACT 59.592 47.619 0.00 0.00 34.55 4.18
64 65 2.159142 ACGTCTGGAAAGAACACGACTT 60.159 45.455 0.00 0.00 34.55 3.01
65 66 2.471743 CGTCTGGAAAGAACACGACTTC 59.528 50.000 0.00 0.00 32.08 3.01
66 67 3.718815 GTCTGGAAAGAACACGACTTCT 58.281 45.455 0.00 0.00 31.41 2.85
67 68 3.736759 GTCTGGAAAGAACACGACTTCTC 59.263 47.826 0.00 0.00 29.74 2.87
68 69 2.726760 CTGGAAAGAACACGACTTCTCG 59.273 50.000 0.00 0.00 46.06 4.04
69 70 2.359848 TGGAAAGAACACGACTTCTCGA 59.640 45.455 0.00 0.00 43.06 4.04
70 71 3.181484 TGGAAAGAACACGACTTCTCGAA 60.181 43.478 0.00 0.00 43.06 3.71
71 72 3.988517 GGAAAGAACACGACTTCTCGAAT 59.011 43.478 0.00 0.00 43.06 3.34
72 73 4.090210 GGAAAGAACACGACTTCTCGAATC 59.910 45.833 0.00 0.00 43.06 2.52
73 74 4.506886 AAGAACACGACTTCTCGAATCT 57.493 40.909 0.00 0.00 43.06 2.40
74 75 3.827625 AGAACACGACTTCTCGAATCTG 58.172 45.455 0.00 0.00 43.06 2.90
75 76 1.983972 ACACGACTTCTCGAATCTGC 58.016 50.000 0.00 0.00 43.06 4.26
76 77 1.269723 ACACGACTTCTCGAATCTGCA 59.730 47.619 0.00 0.00 43.06 4.41
77 78 1.651138 CACGACTTCTCGAATCTGCAC 59.349 52.381 0.00 0.00 43.06 4.57
78 79 1.272781 CGACTTCTCGAATCTGCACC 58.727 55.000 0.00 0.00 43.06 5.01
79 80 1.646189 GACTTCTCGAATCTGCACCC 58.354 55.000 0.00 0.00 0.00 4.61
80 81 0.976641 ACTTCTCGAATCTGCACCCA 59.023 50.000 0.00 0.00 0.00 4.51
81 82 1.338200 ACTTCTCGAATCTGCACCCAC 60.338 52.381 0.00 0.00 0.00 4.61
82 83 0.389817 TTCTCGAATCTGCACCCACG 60.390 55.000 0.00 0.00 0.00 4.94
83 84 1.079819 CTCGAATCTGCACCCACGT 60.080 57.895 0.00 0.00 0.00 4.49
84 85 1.354337 CTCGAATCTGCACCCACGTG 61.354 60.000 9.08 9.08 43.35 4.49
85 86 1.667830 CGAATCTGCACCCACGTGT 60.668 57.895 15.65 0.00 42.39 4.49
86 87 1.868997 GAATCTGCACCCACGTGTG 59.131 57.895 15.65 5.45 42.39 3.82
92 93 3.947841 CACCCACGTGTGCAACCG 61.948 66.667 15.65 4.85 36.73 4.44
110 111 3.632080 CCCACACCCACGTGCCTA 61.632 66.667 10.91 0.00 44.40 3.93
111 112 2.047274 CCACACCCACGTGCCTAG 60.047 66.667 10.91 1.88 44.40 3.02
112 113 2.579657 CCACACCCACGTGCCTAGA 61.580 63.158 10.91 0.00 44.40 2.43
113 114 1.079819 CACACCCACGTGCCTAGAG 60.080 63.158 10.91 0.00 44.40 2.43
114 115 1.533273 ACACCCACGTGCCTAGAGT 60.533 57.895 10.91 0.29 44.40 3.24
115 116 1.119574 ACACCCACGTGCCTAGAGTT 61.120 55.000 10.91 0.00 44.40 3.01
116 117 0.670546 CACCCACGTGCCTAGAGTTG 60.671 60.000 10.91 0.00 32.04 3.16
117 118 1.741770 CCCACGTGCCTAGAGTTGC 60.742 63.158 10.91 0.00 0.00 4.17
118 119 1.005037 CCACGTGCCTAGAGTTGCA 60.005 57.895 10.91 0.00 34.54 4.08
119 120 0.391661 CCACGTGCCTAGAGTTGCAT 60.392 55.000 10.91 0.00 40.07 3.96
120 121 1.002366 CACGTGCCTAGAGTTGCATC 58.998 55.000 0.82 0.00 40.07 3.91
121 122 0.458543 ACGTGCCTAGAGTTGCATCG 60.459 55.000 0.00 2.24 40.07 3.84
122 123 1.756375 CGTGCCTAGAGTTGCATCGC 61.756 60.000 0.00 0.00 40.07 4.58
123 124 1.519234 TGCCTAGAGTTGCATCGCG 60.519 57.895 0.00 0.00 31.31 5.87
124 125 2.875786 GCCTAGAGTTGCATCGCGC 61.876 63.158 0.00 0.00 42.89 6.86
125 126 2.240500 CCTAGAGTTGCATCGCGCC 61.241 63.158 0.00 0.00 41.33 6.53
126 127 1.519234 CTAGAGTTGCATCGCGCCA 60.519 57.895 0.00 0.00 41.33 5.69
127 128 1.485838 CTAGAGTTGCATCGCGCCAG 61.486 60.000 0.00 0.00 41.33 4.85
128 129 1.944234 TAGAGTTGCATCGCGCCAGA 61.944 55.000 0.00 0.00 41.33 3.86
129 130 3.088500 GAGTTGCATCGCGCCAGAC 62.089 63.158 0.00 0.00 41.33 3.51
130 131 3.121030 GTTGCATCGCGCCAGACT 61.121 61.111 0.00 0.00 41.33 3.24
131 132 3.120385 TTGCATCGCGCCAGACTG 61.120 61.111 0.00 0.00 41.33 3.51
142 143 3.419793 CCAGACTGGCTCCACAAAA 57.580 52.632 8.99 0.00 0.00 2.44
143 144 1.691196 CCAGACTGGCTCCACAAAAA 58.309 50.000 8.99 0.00 0.00 1.94
144 145 1.338020 CCAGACTGGCTCCACAAAAAC 59.662 52.381 8.99 0.00 0.00 2.43
145 146 1.002468 CAGACTGGCTCCACAAAAACG 60.002 52.381 0.00 0.00 0.00 3.60
146 147 0.310854 GACTGGCTCCACAAAAACGG 59.689 55.000 0.00 0.00 0.00 4.44
147 148 0.395173 ACTGGCTCCACAAAAACGGT 60.395 50.000 0.00 0.00 0.00 4.83
148 149 0.310854 CTGGCTCCACAAAAACGGTC 59.689 55.000 0.00 0.00 0.00 4.79
149 150 1.281656 GGCTCCACAAAAACGGTCG 59.718 57.895 0.00 0.00 0.00 4.79
150 151 1.161563 GGCTCCACAAAAACGGTCGA 61.162 55.000 0.00 0.00 0.00 4.20
151 152 0.872388 GCTCCACAAAAACGGTCGAT 59.128 50.000 0.00 0.00 0.00 3.59
152 153 1.265905 GCTCCACAAAAACGGTCGATT 59.734 47.619 0.00 0.00 0.00 3.34
153 154 2.287368 GCTCCACAAAAACGGTCGATTT 60.287 45.455 0.00 0.00 0.00 2.17
154 155 3.296628 CTCCACAAAAACGGTCGATTTG 58.703 45.455 17.41 17.41 39.38 2.32
155 156 2.943690 TCCACAAAAACGGTCGATTTGA 59.056 40.909 22.17 6.59 37.46 2.69
156 157 3.002862 TCCACAAAAACGGTCGATTTGAG 59.997 43.478 22.17 17.20 37.46 3.02
157 158 2.719046 CACAAAAACGGTCGATTTGAGC 59.281 45.455 22.17 0.00 41.76 4.26
163 164 3.139029 GGTCGATTTGAGCGTTCCT 57.861 52.632 0.00 0.00 35.01 3.36
164 165 1.000145 GGTCGATTTGAGCGTTCCTC 59.000 55.000 0.00 0.00 41.15 3.71
165 166 1.404315 GGTCGATTTGAGCGTTCCTCT 60.404 52.381 0.00 0.00 41.35 3.69
166 167 1.656095 GTCGATTTGAGCGTTCCTCTG 59.344 52.381 0.00 0.00 41.35 3.35
167 168 1.002366 CGATTTGAGCGTTCCTCTGG 58.998 55.000 0.00 0.00 41.35 3.86
168 169 1.404181 CGATTTGAGCGTTCCTCTGGA 60.404 52.381 0.00 0.00 41.35 3.86
169 170 2.699954 GATTTGAGCGTTCCTCTGGAA 58.300 47.619 0.00 0.00 41.35 3.53
170 171 2.169832 TTTGAGCGTTCCTCTGGAAG 57.830 50.000 0.00 0.00 42.88 3.46
171 172 0.320771 TTGAGCGTTCCTCTGGAAGC 60.321 55.000 0.00 6.09 42.88 3.86
172 173 1.293498 GAGCGTTCCTCTGGAAGCA 59.707 57.895 16.72 0.00 42.88 3.91
173 174 0.739112 GAGCGTTCCTCTGGAAGCAG 60.739 60.000 16.72 7.39 42.88 4.24
174 175 1.743252 GCGTTCCTCTGGAAGCAGG 60.743 63.158 0.00 0.00 42.88 4.85
175 176 1.743252 CGTTCCTCTGGAAGCAGGC 60.743 63.158 0.00 0.00 42.88 4.85
176 177 1.377856 GTTCCTCTGGAAGCAGGCC 60.378 63.158 0.00 0.00 42.88 5.19
177 178 2.606587 TTCCTCTGGAAGCAGGCCC 61.607 63.158 0.00 0.00 36.71 5.80
178 179 3.333219 CCTCTGGAAGCAGGCCCA 61.333 66.667 0.00 0.00 0.00 5.36
182 183 2.759114 TGGAAGCAGGCCCAGAAG 59.241 61.111 0.00 0.00 0.00 2.85
183 184 2.156098 TGGAAGCAGGCCCAGAAGT 61.156 57.895 0.00 0.00 0.00 3.01
184 185 1.676967 GGAAGCAGGCCCAGAAGTG 60.677 63.158 0.00 0.00 0.00 3.16
185 186 2.282745 AAGCAGGCCCAGAAGTGC 60.283 61.111 0.00 0.49 36.10 4.40
186 187 3.255397 AGCAGGCCCAGAAGTGCT 61.255 61.111 9.01 9.01 41.47 4.40
187 188 2.282745 GCAGGCCCAGAAGTGCTT 60.283 61.111 0.00 0.00 32.97 3.91
188 189 1.905354 GCAGGCCCAGAAGTGCTTT 60.905 57.895 0.00 0.00 32.97 3.51
189 190 0.609131 GCAGGCCCAGAAGTGCTTTA 60.609 55.000 0.00 0.00 32.97 1.85
190 191 1.909700 CAGGCCCAGAAGTGCTTTAA 58.090 50.000 0.00 0.00 0.00 1.52
191 192 2.450476 CAGGCCCAGAAGTGCTTTAAT 58.550 47.619 0.00 0.00 0.00 1.40
192 193 3.620488 CAGGCCCAGAAGTGCTTTAATA 58.380 45.455 0.00 0.00 0.00 0.98
193 194 4.210331 CAGGCCCAGAAGTGCTTTAATAT 58.790 43.478 0.00 0.00 0.00 1.28
194 195 4.646492 CAGGCCCAGAAGTGCTTTAATATT 59.354 41.667 0.00 0.00 0.00 1.28
195 196 4.889995 AGGCCCAGAAGTGCTTTAATATTC 59.110 41.667 0.00 0.00 0.00 1.75
196 197 4.261197 GGCCCAGAAGTGCTTTAATATTCG 60.261 45.833 0.00 0.00 0.00 3.34
197 198 4.335594 GCCCAGAAGTGCTTTAATATTCGT 59.664 41.667 0.00 0.00 0.00 3.85
198 199 5.730568 GCCCAGAAGTGCTTTAATATTCGTG 60.731 44.000 0.00 0.00 0.00 4.35
199 200 5.266242 CCAGAAGTGCTTTAATATTCGTGC 58.734 41.667 0.00 0.00 0.00 5.34
200 201 5.065218 CCAGAAGTGCTTTAATATTCGTGCT 59.935 40.000 0.00 0.00 0.00 4.40
201 202 6.257849 CCAGAAGTGCTTTAATATTCGTGCTA 59.742 38.462 0.00 0.00 0.00 3.49
202 203 7.041780 CCAGAAGTGCTTTAATATTCGTGCTAT 60.042 37.037 0.00 0.00 0.00 2.97
203 204 7.795734 CAGAAGTGCTTTAATATTCGTGCTATG 59.204 37.037 0.00 0.00 0.00 2.23
204 205 5.990408 AGTGCTTTAATATTCGTGCTATGC 58.010 37.500 0.00 0.00 0.00 3.14
205 206 5.527214 AGTGCTTTAATATTCGTGCTATGCA 59.473 36.000 0.00 0.00 35.60 3.96
206 207 5.848036 GTGCTTTAATATTCGTGCTATGCAG 59.152 40.000 0.00 0.00 40.08 4.41
207 208 5.757808 TGCTTTAATATTCGTGCTATGCAGA 59.242 36.000 0.00 0.00 40.08 4.26
208 209 6.074005 GCTTTAATATTCGTGCTATGCAGAC 58.926 40.000 0.00 0.00 40.08 3.51
209 210 6.539649 TTTAATATTCGTGCTATGCAGACC 57.460 37.500 0.00 0.00 40.08 3.85
210 211 2.526304 TATTCGTGCTATGCAGACCC 57.474 50.000 0.00 0.00 40.08 4.46
211 212 0.541392 ATTCGTGCTATGCAGACCCA 59.459 50.000 0.00 0.00 40.08 4.51
212 213 0.323302 TTCGTGCTATGCAGACCCAA 59.677 50.000 0.00 0.00 40.08 4.12
213 214 0.391130 TCGTGCTATGCAGACCCAAC 60.391 55.000 0.00 0.00 40.08 3.77
214 215 0.673333 CGTGCTATGCAGACCCAACA 60.673 55.000 0.00 0.00 40.08 3.33
215 216 1.533625 GTGCTATGCAGACCCAACAA 58.466 50.000 0.00 0.00 40.08 2.83
216 217 2.094675 GTGCTATGCAGACCCAACAAT 58.905 47.619 0.00 0.00 40.08 2.71
217 218 2.093890 TGCTATGCAGACCCAACAATG 58.906 47.619 0.00 0.00 33.32 2.82
218 219 2.290832 TGCTATGCAGACCCAACAATGA 60.291 45.455 0.00 0.00 33.32 2.57
219 220 2.754552 GCTATGCAGACCCAACAATGAA 59.245 45.455 0.00 0.00 0.00 2.57
220 221 3.382546 GCTATGCAGACCCAACAATGAAT 59.617 43.478 0.00 0.00 0.00 2.57
221 222 4.580167 GCTATGCAGACCCAACAATGAATA 59.420 41.667 0.00 0.00 0.00 1.75
222 223 4.989279 ATGCAGACCCAACAATGAATAC 57.011 40.909 0.00 0.00 0.00 1.89
223 224 2.746904 TGCAGACCCAACAATGAATACG 59.253 45.455 0.00 0.00 0.00 3.06
224 225 2.097466 GCAGACCCAACAATGAATACGG 59.903 50.000 0.00 0.00 0.00 4.02
225 226 2.682856 CAGACCCAACAATGAATACGGG 59.317 50.000 0.00 0.00 39.72 5.28
226 227 2.891191 ACCCAACAATGAATACGGGT 57.109 45.000 0.00 0.00 42.17 5.28
227 228 3.520317 AGACCCAACAATGAATACGGGTA 59.480 43.478 0.00 0.00 46.93 3.69
228 229 4.019141 AGACCCAACAATGAATACGGGTAA 60.019 41.667 0.00 0.00 46.93 2.85
229 230 4.011698 ACCCAACAATGAATACGGGTAAC 58.988 43.478 0.00 0.00 45.13 2.50
230 231 4.263594 ACCCAACAATGAATACGGGTAACT 60.264 41.667 0.00 0.00 45.13 2.24
231 232 5.045724 ACCCAACAATGAATACGGGTAACTA 60.046 40.000 0.00 0.00 45.13 2.24
232 233 5.881443 CCCAACAATGAATACGGGTAACTAA 59.119 40.000 0.00 0.00 0.00 2.24
233 234 6.374894 CCCAACAATGAATACGGGTAACTAAA 59.625 38.462 0.00 0.00 0.00 1.85
234 235 7.245604 CCAACAATGAATACGGGTAACTAAAC 58.754 38.462 0.00 0.00 0.00 2.01
235 236 6.651755 ACAATGAATACGGGTAACTAAACG 57.348 37.500 0.00 0.00 0.00 3.60
236 237 5.581874 ACAATGAATACGGGTAACTAAACGG 59.418 40.000 0.00 0.00 0.00 4.44
237 238 4.122143 TGAATACGGGTAACTAAACGGG 57.878 45.455 0.00 0.00 0.00 5.28
238 239 3.513515 TGAATACGGGTAACTAAACGGGT 59.486 43.478 0.00 0.00 0.00 5.28
239 240 3.801114 ATACGGGTAACTAAACGGGTC 57.199 47.619 0.00 0.00 0.00 4.46
240 241 0.243636 ACGGGTAACTAAACGGGTCG 59.756 55.000 0.00 0.00 0.00 4.79
241 242 0.243636 CGGGTAACTAAACGGGTCGT 59.756 55.000 0.00 0.00 43.97 4.34
250 251 4.785767 ACGGGTCGTTTTCTTCCC 57.214 55.556 0.00 0.00 36.35 3.97
252 253 3.260931 GGGTCGTTTTCTTCCCGC 58.739 61.111 0.00 0.00 0.00 6.13
253 254 2.674084 GGGTCGTTTTCTTCCCGCG 61.674 63.158 0.00 0.00 0.00 6.46
254 255 2.674084 GGTCGTTTTCTTCCCGCGG 61.674 63.158 21.04 21.04 0.00 6.46
255 256 1.957695 GTCGTTTTCTTCCCGCGGT 60.958 57.895 26.12 0.00 0.00 5.68
256 257 1.665599 TCGTTTTCTTCCCGCGGTC 60.666 57.895 26.12 2.86 0.00 4.79
257 258 2.674084 CGTTTTCTTCCCGCGGTCC 61.674 63.158 26.12 1.04 0.00 4.46
258 259 1.302271 GTTTTCTTCCCGCGGTCCT 60.302 57.895 26.12 0.00 0.00 3.85
259 260 1.302192 TTTTCTTCCCGCGGTCCTG 60.302 57.895 26.12 8.83 0.00 3.86
260 261 1.760479 TTTTCTTCCCGCGGTCCTGA 61.760 55.000 26.12 11.47 0.00 3.86
261 262 2.167398 TTTCTTCCCGCGGTCCTGAG 62.167 60.000 26.12 13.61 0.00 3.35
262 263 4.821589 CTTCCCGCGGTCCTGAGC 62.822 72.222 26.12 0.00 0.00 4.26
273 274 1.067495 GGTCCTGAGCGAGGTATATGC 60.067 57.143 4.89 0.00 43.37 3.14
274 275 1.613925 GTCCTGAGCGAGGTATATGCA 59.386 52.381 4.89 0.00 43.37 3.96
275 276 1.889170 TCCTGAGCGAGGTATATGCAG 59.111 52.381 4.89 0.00 43.37 4.41
276 277 1.671261 CCTGAGCGAGGTATATGCAGC 60.671 57.143 0.00 0.00 37.02 5.25
277 278 0.318441 TGAGCGAGGTATATGCAGCC 59.682 55.000 0.00 0.00 0.00 4.85
278 279 0.605589 GAGCGAGGTATATGCAGCCT 59.394 55.000 0.00 0.00 34.93 4.58
279 280 1.819288 GAGCGAGGTATATGCAGCCTA 59.181 52.381 0.00 0.00 31.89 3.93
280 281 1.546476 AGCGAGGTATATGCAGCCTAC 59.454 52.381 0.00 0.00 31.89 3.18
281 282 1.272490 GCGAGGTATATGCAGCCTACA 59.728 52.381 0.00 0.00 31.89 2.74
282 283 2.288825 GCGAGGTATATGCAGCCTACAA 60.289 50.000 0.00 0.00 31.89 2.41
283 284 3.802329 GCGAGGTATATGCAGCCTACAAA 60.802 47.826 0.00 0.00 31.89 2.83
284 285 4.377021 CGAGGTATATGCAGCCTACAAAA 58.623 43.478 0.00 0.00 31.89 2.44
285 286 4.211374 CGAGGTATATGCAGCCTACAAAAC 59.789 45.833 0.00 0.00 31.89 2.43
286 287 4.127171 AGGTATATGCAGCCTACAAAACG 58.873 43.478 0.00 0.00 0.00 3.60
287 288 3.303791 GGTATATGCAGCCTACAAAACGC 60.304 47.826 0.00 0.00 0.00 4.84
288 289 0.724549 TATGCAGCCTACAAAACGCG 59.275 50.000 3.53 3.53 0.00 6.01
289 290 1.234615 ATGCAGCCTACAAAACGCGT 61.235 50.000 5.58 5.58 0.00 6.01
290 291 0.600518 TGCAGCCTACAAAACGCGTA 60.601 50.000 14.46 0.00 0.00 4.42
291 292 0.179233 GCAGCCTACAAAACGCGTAC 60.179 55.000 14.46 0.00 0.00 3.67
292 293 1.141645 CAGCCTACAAAACGCGTACA 58.858 50.000 14.46 0.00 0.00 2.90
293 294 1.126113 CAGCCTACAAAACGCGTACAG 59.874 52.381 14.46 7.78 0.00 2.74
294 295 1.000060 AGCCTACAAAACGCGTACAGA 60.000 47.619 14.46 0.00 0.00 3.41
295 296 1.389106 GCCTACAAAACGCGTACAGAG 59.611 52.381 14.46 6.65 0.00 3.35
296 297 2.669364 CCTACAAAACGCGTACAGAGT 58.331 47.619 14.46 10.03 0.00 3.24
297 298 2.407361 CCTACAAAACGCGTACAGAGTG 59.593 50.000 14.46 7.18 31.75 3.51
298 299 1.214367 ACAAAACGCGTACAGAGTGG 58.786 50.000 14.46 0.00 31.75 4.00
299 300 0.110823 CAAAACGCGTACAGAGTGGC 60.111 55.000 14.46 0.00 31.75 5.01
300 301 0.249741 AAAACGCGTACAGAGTGGCT 60.250 50.000 14.46 0.00 31.75 4.75
301 302 0.599558 AAACGCGTACAGAGTGGCTA 59.400 50.000 14.46 0.00 31.75 3.93
302 303 0.109412 AACGCGTACAGAGTGGCTAC 60.109 55.000 14.46 0.00 31.75 3.58
303 304 0.959372 ACGCGTACAGAGTGGCTACT 60.959 55.000 11.67 0.69 40.66 2.57
304 305 0.523546 CGCGTACAGAGTGGCTACTG 60.524 60.000 7.76 0.00 37.25 2.74
305 306 0.526662 GCGTACAGAGTGGCTACTGT 59.473 55.000 7.76 0.00 46.81 3.55
306 307 1.467713 GCGTACAGAGTGGCTACTGTC 60.468 57.143 7.76 0.00 44.59 3.51
307 308 1.202043 CGTACAGAGTGGCTACTGTCG 60.202 57.143 7.76 0.00 44.59 4.35
308 309 2.082231 GTACAGAGTGGCTACTGTCGA 58.918 52.381 7.76 0.00 44.59 4.20
309 310 1.840737 ACAGAGTGGCTACTGTCGAT 58.159 50.000 7.76 0.00 42.61 3.59
310 311 2.171840 ACAGAGTGGCTACTGTCGATT 58.828 47.619 7.76 0.00 42.61 3.34
311 312 2.563179 ACAGAGTGGCTACTGTCGATTT 59.437 45.455 7.76 0.00 42.61 2.17
312 313 3.006967 ACAGAGTGGCTACTGTCGATTTT 59.993 43.478 7.76 0.00 42.61 1.82
313 314 3.614616 CAGAGTGGCTACTGTCGATTTTC 59.385 47.826 7.76 0.00 37.25 2.29
314 315 3.258372 AGAGTGGCTACTGTCGATTTTCA 59.742 43.478 7.76 0.00 37.25 2.69
315 316 3.589988 AGTGGCTACTGTCGATTTTCAG 58.410 45.455 0.13 0.00 35.34 3.02
316 317 2.094417 GTGGCTACTGTCGATTTTCAGC 59.906 50.000 0.96 1.36 35.37 4.26
317 318 1.666189 GGCTACTGTCGATTTTCAGCC 59.334 52.381 10.84 10.84 40.22 4.85
318 319 2.622436 GCTACTGTCGATTTTCAGCCT 58.378 47.619 0.96 0.00 35.37 4.58
319 320 3.003480 GCTACTGTCGATTTTCAGCCTT 58.997 45.455 0.96 0.00 35.37 4.35
320 321 3.062774 GCTACTGTCGATTTTCAGCCTTC 59.937 47.826 0.96 0.00 35.37 3.46
321 322 3.409026 ACTGTCGATTTTCAGCCTTCT 57.591 42.857 0.96 0.00 35.37 2.85
322 323 3.070018 ACTGTCGATTTTCAGCCTTCTG 58.930 45.455 0.96 0.00 41.67 3.02
323 324 2.417933 CTGTCGATTTTCAGCCTTCTGG 59.582 50.000 0.00 0.00 40.69 3.86
324 325 2.038426 TGTCGATTTTCAGCCTTCTGGA 59.962 45.455 0.00 0.00 40.69 3.86
325 326 3.274288 GTCGATTTTCAGCCTTCTGGAT 58.726 45.455 0.00 0.00 40.69 3.41
326 327 3.691609 GTCGATTTTCAGCCTTCTGGATT 59.308 43.478 0.00 0.00 40.69 3.01
327 328 4.156739 GTCGATTTTCAGCCTTCTGGATTT 59.843 41.667 0.00 0.00 40.69 2.17
328 329 4.396166 TCGATTTTCAGCCTTCTGGATTTC 59.604 41.667 0.00 0.00 40.69 2.17
329 330 4.666237 GATTTTCAGCCTTCTGGATTTCG 58.334 43.478 0.00 0.00 40.69 3.46
330 331 3.417069 TTTCAGCCTTCTGGATTTCGA 57.583 42.857 0.00 0.00 40.69 3.71
331 332 2.680312 TCAGCCTTCTGGATTTCGAG 57.320 50.000 0.00 0.00 40.69 4.04
332 333 2.179427 TCAGCCTTCTGGATTTCGAGA 58.821 47.619 0.00 0.00 40.69 4.04
333 334 2.567169 TCAGCCTTCTGGATTTCGAGAA 59.433 45.455 5.15 5.15 40.69 2.87
334 335 3.007940 TCAGCCTTCTGGATTTCGAGAAA 59.992 43.478 6.50 0.40 39.58 2.52
335 336 3.753272 CAGCCTTCTGGATTTCGAGAAAA 59.247 43.478 2.17 0.00 39.58 2.29
336 337 3.753797 AGCCTTCTGGATTTCGAGAAAAC 59.246 43.478 2.17 0.04 39.58 2.43
337 338 3.502211 GCCTTCTGGATTTCGAGAAAACA 59.498 43.478 2.17 4.66 39.58 2.83
338 339 4.023193 GCCTTCTGGATTTCGAGAAAACAA 60.023 41.667 2.17 0.00 39.58 2.83
339 340 5.507315 GCCTTCTGGATTTCGAGAAAACAAA 60.507 40.000 2.17 3.24 39.58 2.83
340 341 6.145535 CCTTCTGGATTTCGAGAAAACAAAG 58.854 40.000 2.17 10.01 39.58 2.77
341 342 5.689383 TCTGGATTTCGAGAAAACAAAGG 57.311 39.130 2.17 0.00 33.56 3.11
342 343 4.023193 TCTGGATTTCGAGAAAACAAAGGC 60.023 41.667 2.17 0.00 33.56 4.35
343 344 3.234386 GGATTTCGAGAAAACAAAGGCG 58.766 45.455 2.17 0.00 33.56 5.52
344 345 3.304458 GGATTTCGAGAAAACAAAGGCGT 60.304 43.478 2.17 0.00 33.56 5.68
345 346 4.083696 GGATTTCGAGAAAACAAAGGCGTA 60.084 41.667 2.17 0.00 33.56 4.42
346 347 4.461992 TTTCGAGAAAACAAAGGCGTAG 57.538 40.909 0.00 0.00 0.00 3.51
347 348 3.374220 TCGAGAAAACAAAGGCGTAGA 57.626 42.857 0.00 0.00 0.00 2.59
348 349 3.921677 TCGAGAAAACAAAGGCGTAGAT 58.078 40.909 0.00 0.00 0.00 1.98
349 350 3.678072 TCGAGAAAACAAAGGCGTAGATG 59.322 43.478 0.00 0.00 0.00 2.90
350 351 3.432252 CGAGAAAACAAAGGCGTAGATGT 59.568 43.478 0.00 0.00 0.00 3.06
351 352 4.084013 CGAGAAAACAAAGGCGTAGATGTT 60.084 41.667 0.87 0.87 37.59 2.71
352 353 5.560183 CGAGAAAACAAAGGCGTAGATGTTT 60.560 40.000 10.34 10.34 45.17 2.83
356 357 4.911514 ACAAAGGCGTAGATGTTTTTGT 57.088 36.364 0.00 0.00 34.85 2.83
357 358 5.257082 ACAAAGGCGTAGATGTTTTTGTT 57.743 34.783 0.00 0.00 35.83 2.83
358 359 5.656480 ACAAAGGCGTAGATGTTTTTGTTT 58.344 33.333 0.00 0.00 35.83 2.83
359 360 6.103330 ACAAAGGCGTAGATGTTTTTGTTTT 58.897 32.000 0.00 0.00 35.83 2.43
360 361 6.592220 ACAAAGGCGTAGATGTTTTTGTTTTT 59.408 30.769 0.00 0.00 35.83 1.94
616 633 1.063488 CGGCCTAATTTTTCCGGCG 59.937 57.895 0.00 0.00 43.38 6.46
617 634 1.370587 CGGCCTAATTTTTCCGGCGA 61.371 55.000 9.30 0.00 44.31 5.54
618 635 0.099968 GGCCTAATTTTTCCGGCGAC 59.900 55.000 9.30 0.00 43.38 5.19
619 636 0.806241 GCCTAATTTTTCCGGCGACA 59.194 50.000 9.30 0.00 32.22 4.35
620 637 1.200484 GCCTAATTTTTCCGGCGACAA 59.800 47.619 9.30 0.00 32.22 3.18
621 638 2.858839 CCTAATTTTTCCGGCGACAAC 58.141 47.619 9.30 0.00 0.00 3.32
622 639 2.501881 CTAATTTTTCCGGCGACAACG 58.498 47.619 9.30 0.00 42.93 4.10
909 935 1.172175 GAGGAAAAGCTTGGCTGAGG 58.828 55.000 0.00 0.00 39.62 3.86
955 981 3.716195 TGGTGGCGCTGGTGCTAT 61.716 61.111 7.64 0.00 36.97 2.97
957 983 2.897350 GTGGCGCTGGTGCTATCC 60.897 66.667 7.64 0.00 36.97 2.59
1575 1613 2.415010 CAGCCCGAGATCGACCTG 59.585 66.667 3.31 5.85 43.02 4.00
1697 1736 2.353109 CCAGCGTTCTGACTTCTGATGA 60.353 50.000 0.00 0.00 42.95 2.92
1718 1757 1.002134 ATCTTGCTTGGTGACGGGG 60.002 57.895 0.00 0.00 0.00 5.73
2113 2187 4.118410 AGCTTCGTCTAGCATTTGATCAG 58.882 43.478 0.00 0.00 43.68 2.90
2157 2234 1.330655 GGGAGCGATCCAGACTTCCA 61.331 60.000 23.22 0.00 0.00 3.53
2168 2245 0.704664 AGACTTCCAATCCAACCCCC 59.295 55.000 0.00 0.00 0.00 5.40
2190 2267 2.623416 CTCCTTAATTTTGCCCGATCCC 59.377 50.000 0.00 0.00 0.00 3.85
2196 2273 2.122783 TTTTGCCCGATCCCTGTAAG 57.877 50.000 0.00 0.00 0.00 2.34
2201 2278 2.224917 TGCCCGATCCCTGTAAGTTTTT 60.225 45.455 0.00 0.00 0.00 1.94
2223 2300 8.607441 TTTTACCTGTAGCATATCATCATCAC 57.393 34.615 0.00 0.00 0.00 3.06
2224 2301 4.814147 ACCTGTAGCATATCATCATCACG 58.186 43.478 0.00 0.00 0.00 4.35
2225 2302 4.524328 ACCTGTAGCATATCATCATCACGA 59.476 41.667 0.00 0.00 0.00 4.35
2226 2303 4.861462 CCTGTAGCATATCATCATCACGAC 59.139 45.833 0.00 0.00 0.00 4.34
2227 2304 5.336293 CCTGTAGCATATCATCATCACGACT 60.336 44.000 0.00 0.00 0.00 4.18
2250 2327 1.134280 ACGAGCTGGCTAATCTGCAAT 60.134 47.619 0.00 0.00 34.63 3.56
2277 2357 9.537852 TCTACTCCACTTTTACTAATCCACTTA 57.462 33.333 0.00 0.00 0.00 2.24
2278 2358 9.583765 CTACTCCACTTTTACTAATCCACTTAC 57.416 37.037 0.00 0.00 0.00 2.34
2279 2359 7.392418 ACTCCACTTTTACTAATCCACTTACC 58.608 38.462 0.00 0.00 0.00 2.85
2280 2360 6.400568 TCCACTTTTACTAATCCACTTACCG 58.599 40.000 0.00 0.00 0.00 4.02
2281 2361 5.064325 CCACTTTTACTAATCCACTTACCGC 59.936 44.000 0.00 0.00 0.00 5.68
2282 2362 5.873164 CACTTTTACTAATCCACTTACCGCT 59.127 40.000 0.00 0.00 0.00 5.52
2283 2363 5.873164 ACTTTTACTAATCCACTTACCGCTG 59.127 40.000 0.00 0.00 0.00 5.18
2284 2364 5.664294 TTTACTAATCCACTTACCGCTGA 57.336 39.130 0.00 0.00 0.00 4.26
2285 2365 5.664294 TTACTAATCCACTTACCGCTGAA 57.336 39.130 0.00 0.00 0.00 3.02
2286 2366 4.755266 ACTAATCCACTTACCGCTGAAT 57.245 40.909 0.00 0.00 0.00 2.57
2287 2367 5.864418 ACTAATCCACTTACCGCTGAATA 57.136 39.130 0.00 0.00 0.00 1.75
2288 2368 5.844004 ACTAATCCACTTACCGCTGAATAG 58.156 41.667 0.00 0.00 0.00 1.73
2289 2369 4.755266 AATCCACTTACCGCTGAATAGT 57.245 40.909 0.00 0.00 0.00 2.12
2290 2370 4.755266 ATCCACTTACCGCTGAATAGTT 57.245 40.909 0.00 0.00 0.00 2.24
2291 2371 4.119442 TCCACTTACCGCTGAATAGTTC 57.881 45.455 0.00 0.00 0.00 3.01
2292 2372 2.858344 CCACTTACCGCTGAATAGTTCG 59.142 50.000 0.00 0.00 0.00 3.95
2293 2373 2.281762 CACTTACCGCTGAATAGTTCGC 59.718 50.000 0.00 0.00 0.00 4.70
2294 2374 2.094390 ACTTACCGCTGAATAGTTCGCA 60.094 45.455 0.00 0.00 32.28 5.10
2297 2377 1.475280 ACCGCTGAATAGTTCGCACTA 59.525 47.619 0.00 0.00 39.94 2.74
2308 2388 4.778534 AGTTCGCACTACTGCTTTAGTA 57.221 40.909 0.00 0.00 41.77 1.82
2310 2390 4.022589 AGTTCGCACTACTGCTTTAGTACA 60.023 41.667 0.00 0.00 41.77 2.90
2313 2410 3.852536 CGCACTACTGCTTTAGTACAGTC 59.147 47.826 0.00 0.00 43.55 3.51
2325 2433 6.400091 GCTTTAGTACAGTCACTTTCATGTCG 60.400 42.308 0.00 0.00 0.00 4.35
2419 2535 2.748461 TTCTTTAATATGCGCGGTGC 57.252 45.000 8.83 6.58 46.70 5.01
2476 2592 4.445453 TGAGATCTCGAATGGGAAATGTG 58.555 43.478 17.76 0.00 0.00 3.21
2546 2663 1.480137 CTTTCTCTCTCACGGGCTCAT 59.520 52.381 0.00 0.00 0.00 2.90
2637 2771 1.482182 TCCAGTGGTGAGATTCGATGG 59.518 52.381 9.54 0.00 0.00 3.51
2638 2772 1.473965 CCAGTGGTGAGATTCGATGGG 60.474 57.143 0.00 0.00 0.00 4.00
2764 2899 5.121221 ACTTTAGCAAAAATTGTCTCCCG 57.879 39.130 0.00 0.00 0.00 5.14
2804 3718 3.614616 GCTTCACTTCACGAATCAGGTAG 59.385 47.826 0.00 0.00 0.00 3.18
2813 3727 4.639310 TCACGAATCAGGTAGAGAAGGTAC 59.361 45.833 0.00 0.00 0.00 3.34
2859 3773 3.266636 CATGACAACGGTATGCTTGGTA 58.733 45.455 0.00 0.00 0.00 3.25
2860 3774 2.690786 TGACAACGGTATGCTTGGTAC 58.309 47.619 0.00 0.00 0.00 3.34
2861 3775 2.300723 TGACAACGGTATGCTTGGTACT 59.699 45.455 0.00 0.00 0.00 2.73
2862 3776 3.244284 TGACAACGGTATGCTTGGTACTT 60.244 43.478 0.00 0.00 0.00 2.24
2863 3777 3.332034 ACAACGGTATGCTTGGTACTTC 58.668 45.455 0.00 0.00 0.00 3.01
2864 3778 3.007614 ACAACGGTATGCTTGGTACTTCT 59.992 43.478 0.00 0.00 0.00 2.85
2865 3779 4.221262 ACAACGGTATGCTTGGTACTTCTA 59.779 41.667 0.00 0.00 0.00 2.10
2866 3780 4.650754 ACGGTATGCTTGGTACTTCTAG 57.349 45.455 0.00 0.00 0.00 2.43
2867 3781 4.275810 ACGGTATGCTTGGTACTTCTAGA 58.724 43.478 0.00 0.00 0.00 2.43
2874 3788 1.315690 TGGTACTTCTAGATCGGCCG 58.684 55.000 22.12 22.12 0.00 6.13
2881 3795 0.752009 TCTAGATCGGCCGCTCAAGT 60.752 55.000 28.97 12.61 0.00 3.16
2890 3804 1.172812 GCCGCTCAAGTCCAACCTTT 61.173 55.000 0.00 0.00 0.00 3.11
2908 3822 8.903820 CCAACCTTTTATTTAGAACTATCCCTG 58.096 37.037 0.00 0.00 0.00 4.45
2979 3894 4.897051 ACATAGGGGGTAGATGATATCCC 58.103 47.826 0.00 0.00 39.22 3.85
3058 3973 9.759473 ATAAAAAGGATATAATACATGGCTGCT 57.241 29.630 0.00 0.00 0.00 4.24
3059 3974 7.458409 AAAAGGATATAATACATGGCTGCTG 57.542 36.000 0.00 0.00 0.00 4.41
3060 3975 5.108187 AGGATATAATACATGGCTGCTGG 57.892 43.478 0.00 0.00 0.00 4.85
3061 3976 4.080129 AGGATATAATACATGGCTGCTGGG 60.080 45.833 0.00 0.00 0.00 4.45
3062 3977 2.592102 ATAATACATGGCTGCTGGGG 57.408 50.000 0.00 0.00 0.00 4.96
3063 3978 1.221635 TAATACATGGCTGCTGGGGT 58.778 50.000 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.787084 TCCCTTCCTCACCACTCTCT 59.213 55.000 0.00 0.00 0.00 3.10
3 4 0.252467 CCTCCCTTCCTCACCACTCT 60.252 60.000 0.00 0.00 0.00 3.24
5 6 0.838122 CACCTCCCTTCCTCACCACT 60.838 60.000 0.00 0.00 0.00 4.00
7 8 0.545309 CTCACCTCCCTTCCTCACCA 60.545 60.000 0.00 0.00 0.00 4.17
8 9 1.268283 CCTCACCTCCCTTCCTCACC 61.268 65.000 0.00 0.00 0.00 4.02
9 10 0.252284 TCCTCACCTCCCTTCCTCAC 60.252 60.000 0.00 0.00 0.00 3.51
10 11 0.719015 ATCCTCACCTCCCTTCCTCA 59.281 55.000 0.00 0.00 0.00 3.86
11 12 2.777459 TATCCTCACCTCCCTTCCTC 57.223 55.000 0.00 0.00 0.00 3.71
12 13 3.718956 CAATTATCCTCACCTCCCTTCCT 59.281 47.826 0.00 0.00 0.00 3.36
13 14 3.716872 TCAATTATCCTCACCTCCCTTCC 59.283 47.826 0.00 0.00 0.00 3.46
14 15 5.072329 TCATCAATTATCCTCACCTCCCTTC 59.928 44.000 0.00 0.00 0.00 3.46
15 16 4.977739 TCATCAATTATCCTCACCTCCCTT 59.022 41.667 0.00 0.00 0.00 3.95
16 17 4.349342 GTCATCAATTATCCTCACCTCCCT 59.651 45.833 0.00 0.00 0.00 4.20
17 18 4.646572 GTCATCAATTATCCTCACCTCCC 58.353 47.826 0.00 0.00 0.00 4.30
18 19 4.039245 TCGTCATCAATTATCCTCACCTCC 59.961 45.833 0.00 0.00 0.00 4.30
19 20 4.985409 GTCGTCATCAATTATCCTCACCTC 59.015 45.833 0.00 0.00 0.00 3.85
20 21 4.405680 TGTCGTCATCAATTATCCTCACCT 59.594 41.667 0.00 0.00 0.00 4.00
21 22 4.508124 GTGTCGTCATCAATTATCCTCACC 59.492 45.833 0.00 0.00 0.00 4.02
22 23 4.207224 CGTGTCGTCATCAATTATCCTCAC 59.793 45.833 0.00 0.00 0.00 3.51
23 24 4.142249 ACGTGTCGTCATCAATTATCCTCA 60.142 41.667 0.00 0.00 33.69 3.86
24 25 4.360563 ACGTGTCGTCATCAATTATCCTC 58.639 43.478 0.00 0.00 33.69 3.71
25 26 4.386867 ACGTGTCGTCATCAATTATCCT 57.613 40.909 0.00 0.00 33.69 3.24
38 39 1.135527 TGTTCTTTCCAGACGTGTCGT 59.864 47.619 0.00 0.00 45.10 4.34
39 40 1.521423 GTGTTCTTTCCAGACGTGTCG 59.479 52.381 0.00 0.00 34.09 4.35
40 41 1.521423 CGTGTTCTTTCCAGACGTGTC 59.479 52.381 0.00 0.00 0.00 3.67
41 42 1.135527 TCGTGTTCTTTCCAGACGTGT 59.864 47.619 0.00 0.00 0.00 4.49
42 43 1.521423 GTCGTGTTCTTTCCAGACGTG 59.479 52.381 0.00 0.00 0.00 4.49
43 44 1.407979 AGTCGTGTTCTTTCCAGACGT 59.592 47.619 0.00 0.00 34.21 4.34
44 45 2.135664 AGTCGTGTTCTTTCCAGACG 57.864 50.000 0.00 0.00 34.21 4.18
45 46 3.718815 AGAAGTCGTGTTCTTTCCAGAC 58.281 45.455 0.00 0.00 32.59 3.51
46 47 3.550233 CGAGAAGTCGTGTTCTTTCCAGA 60.550 47.826 3.98 0.00 41.57 3.86
47 48 2.726760 CGAGAAGTCGTGTTCTTTCCAG 59.273 50.000 3.98 0.00 41.57 3.86
48 49 2.359848 TCGAGAAGTCGTGTTCTTTCCA 59.640 45.455 3.98 0.00 46.85 3.53
49 50 3.009301 TCGAGAAGTCGTGTTCTTTCC 57.991 47.619 3.98 0.00 46.85 3.13
50 51 4.918583 AGATTCGAGAAGTCGTGTTCTTTC 59.081 41.667 3.98 1.42 46.85 2.62
51 52 4.681942 CAGATTCGAGAAGTCGTGTTCTTT 59.318 41.667 3.98 0.00 46.85 2.52
52 53 4.230657 CAGATTCGAGAAGTCGTGTTCTT 58.769 43.478 3.98 0.00 46.85 2.52
53 54 3.827625 CAGATTCGAGAAGTCGTGTTCT 58.172 45.455 2.27 2.27 46.85 3.01
54 55 2.342948 GCAGATTCGAGAAGTCGTGTTC 59.657 50.000 0.00 0.00 46.85 3.18
55 56 2.288213 TGCAGATTCGAGAAGTCGTGTT 60.288 45.455 0.00 0.00 46.85 3.32
56 57 1.269723 TGCAGATTCGAGAAGTCGTGT 59.730 47.619 0.00 0.00 46.85 4.49
57 58 1.651138 GTGCAGATTCGAGAAGTCGTG 59.349 52.381 0.00 0.00 46.85 4.35
58 59 1.402984 GGTGCAGATTCGAGAAGTCGT 60.403 52.381 0.00 0.00 46.85 4.34
60 61 1.066858 TGGGTGCAGATTCGAGAAGTC 60.067 52.381 0.00 0.00 0.00 3.01
61 62 0.976641 TGGGTGCAGATTCGAGAAGT 59.023 50.000 0.00 0.00 0.00 3.01
62 63 1.363744 GTGGGTGCAGATTCGAGAAG 58.636 55.000 0.00 0.00 0.00 2.85
63 64 0.389817 CGTGGGTGCAGATTCGAGAA 60.390 55.000 0.00 0.00 0.00 2.87
64 65 1.215382 CGTGGGTGCAGATTCGAGA 59.785 57.895 0.00 0.00 0.00 4.04
65 66 1.079819 ACGTGGGTGCAGATTCGAG 60.080 57.895 7.98 0.00 0.00 4.04
66 67 1.374125 CACGTGGGTGCAGATTCGA 60.374 57.895 7.95 0.00 37.35 3.71
67 68 3.168271 CACGTGGGTGCAGATTCG 58.832 61.111 7.95 0.00 37.35 3.34
93 94 3.605749 CTAGGCACGTGGGTGTGGG 62.606 68.421 18.88 0.00 46.13 4.61
94 95 2.047274 CTAGGCACGTGGGTGTGG 60.047 66.667 18.88 0.00 46.13 4.17
95 96 1.079819 CTCTAGGCACGTGGGTGTG 60.080 63.158 18.88 0.00 46.13 3.82
96 97 1.119574 AACTCTAGGCACGTGGGTGT 61.120 55.000 18.88 1.04 46.13 4.16
98 99 1.671742 CAACTCTAGGCACGTGGGT 59.328 57.895 18.88 0.00 0.00 4.51
99 100 1.741770 GCAACTCTAGGCACGTGGG 60.742 63.158 18.88 0.00 0.00 4.61
100 101 0.391661 ATGCAACTCTAGGCACGTGG 60.392 55.000 18.88 1.25 43.75 4.94
101 102 1.002366 GATGCAACTCTAGGCACGTG 58.998 55.000 12.28 12.28 43.75 4.49
102 103 0.458543 CGATGCAACTCTAGGCACGT 60.459 55.000 0.00 0.00 43.75 4.49
103 104 1.756375 GCGATGCAACTCTAGGCACG 61.756 60.000 0.00 0.00 43.75 5.34
104 105 1.756375 CGCGATGCAACTCTAGGCAC 61.756 60.000 0.00 0.00 43.75 5.01
105 106 1.519234 CGCGATGCAACTCTAGGCA 60.519 57.895 0.00 0.00 45.23 4.75
106 107 2.875786 GCGCGATGCAACTCTAGGC 61.876 63.158 12.10 0.00 45.45 3.93
107 108 3.313750 GCGCGATGCAACTCTAGG 58.686 61.111 12.10 0.00 45.45 3.02
124 125 1.338020 GTTTTTGTGGAGCCAGTCTGG 59.662 52.381 15.15 15.15 41.55 3.86
125 126 1.002468 CGTTTTTGTGGAGCCAGTCTG 60.002 52.381 0.00 0.00 0.00 3.51
126 127 1.308998 CGTTTTTGTGGAGCCAGTCT 58.691 50.000 0.00 0.00 0.00 3.24
127 128 0.310854 CCGTTTTTGTGGAGCCAGTC 59.689 55.000 0.00 0.00 0.00 3.51
128 129 0.395173 ACCGTTTTTGTGGAGCCAGT 60.395 50.000 0.00 0.00 0.00 4.00
129 130 0.310854 GACCGTTTTTGTGGAGCCAG 59.689 55.000 0.00 0.00 0.00 4.85
130 131 1.440938 CGACCGTTTTTGTGGAGCCA 61.441 55.000 0.00 0.00 0.00 4.75
131 132 1.161563 TCGACCGTTTTTGTGGAGCC 61.162 55.000 0.00 0.00 0.00 4.70
132 133 0.872388 ATCGACCGTTTTTGTGGAGC 59.128 50.000 0.00 0.00 0.00 4.70
133 134 3.002862 TCAAATCGACCGTTTTTGTGGAG 59.997 43.478 7.98 0.00 33.24 3.86
134 135 2.943690 TCAAATCGACCGTTTTTGTGGA 59.056 40.909 7.98 0.00 33.24 4.02
135 136 3.296628 CTCAAATCGACCGTTTTTGTGG 58.703 45.455 7.98 1.11 33.24 4.17
136 137 2.719046 GCTCAAATCGACCGTTTTTGTG 59.281 45.455 7.98 7.08 33.24 3.33
137 138 2.601266 CGCTCAAATCGACCGTTTTTGT 60.601 45.455 7.98 0.00 33.24 2.83
138 139 1.969256 CGCTCAAATCGACCGTTTTTG 59.031 47.619 2.67 2.67 0.00 2.44
139 140 1.600485 ACGCTCAAATCGACCGTTTTT 59.400 42.857 0.00 0.00 31.90 1.94
140 141 1.223187 ACGCTCAAATCGACCGTTTT 58.777 45.000 0.00 0.00 31.90 2.43
141 142 1.193874 GAACGCTCAAATCGACCGTTT 59.806 47.619 0.00 0.00 44.05 3.60
142 143 0.788391 GAACGCTCAAATCGACCGTT 59.212 50.000 0.00 0.00 46.09 4.44
143 144 1.012486 GGAACGCTCAAATCGACCGT 61.012 55.000 0.00 0.00 37.54 4.83
144 145 0.736325 AGGAACGCTCAAATCGACCG 60.736 55.000 0.00 0.00 34.46 4.79
145 146 1.000145 GAGGAACGCTCAAATCGACC 59.000 55.000 0.00 0.00 0.00 4.79
146 147 1.656095 CAGAGGAACGCTCAAATCGAC 59.344 52.381 0.00 0.00 35.27 4.20
147 148 1.404181 CCAGAGGAACGCTCAAATCGA 60.404 52.381 0.00 0.00 35.27 3.59
148 149 1.002366 CCAGAGGAACGCTCAAATCG 58.998 55.000 0.00 0.00 35.27 3.34
149 150 2.386661 TCCAGAGGAACGCTCAAATC 57.613 50.000 0.00 0.00 35.27 2.17
150 151 2.704572 CTTCCAGAGGAACGCTCAAAT 58.295 47.619 0.00 0.00 35.27 2.32
151 152 1.878102 GCTTCCAGAGGAACGCTCAAA 60.878 52.381 10.78 0.00 35.27 2.69
152 153 0.320771 GCTTCCAGAGGAACGCTCAA 60.321 55.000 10.78 0.00 35.27 3.02
153 154 1.293498 GCTTCCAGAGGAACGCTCA 59.707 57.895 10.78 0.00 35.27 4.26
154 155 0.739112 CTGCTTCCAGAGGAACGCTC 60.739 60.000 15.85 0.00 41.77 5.03
155 156 1.294780 CTGCTTCCAGAGGAACGCT 59.705 57.895 15.85 0.00 41.77 5.07
156 157 1.743252 CCTGCTTCCAGAGGAACGC 60.743 63.158 11.01 11.01 41.77 4.84
157 158 1.743252 GCCTGCTTCCAGAGGAACG 60.743 63.158 0.00 0.00 41.77 3.95
158 159 1.377856 GGCCTGCTTCCAGAGGAAC 60.378 63.158 0.00 0.00 41.77 3.62
159 160 2.606587 GGGCCTGCTTCCAGAGGAA 61.607 63.158 0.84 0.00 41.77 3.36
160 161 3.011517 GGGCCTGCTTCCAGAGGA 61.012 66.667 0.84 0.00 41.77 3.71
161 162 3.333219 TGGGCCTGCTTCCAGAGG 61.333 66.667 4.53 0.00 41.77 3.69
165 166 2.156098 ACTTCTGGGCCTGCTTCCA 61.156 57.895 4.53 0.00 0.00 3.53
166 167 1.676967 CACTTCTGGGCCTGCTTCC 60.677 63.158 4.53 0.00 0.00 3.46
167 168 2.338785 GCACTTCTGGGCCTGCTTC 61.339 63.158 4.53 0.00 0.00 3.86
168 169 2.282745 GCACTTCTGGGCCTGCTT 60.283 61.111 4.53 0.00 0.00 3.91
169 170 2.363292 AAAGCACTTCTGGGCCTGCT 62.363 55.000 11.12 11.12 41.83 4.24
170 171 0.609131 TAAAGCACTTCTGGGCCTGC 60.609 55.000 4.53 5.73 0.00 4.85
171 172 1.909700 TTAAAGCACTTCTGGGCCTG 58.090 50.000 4.53 4.06 0.00 4.85
172 173 2.907458 ATTAAAGCACTTCTGGGCCT 57.093 45.000 4.53 0.00 0.00 5.19
173 174 4.261197 CGAATATTAAAGCACTTCTGGGCC 60.261 45.833 0.00 0.00 0.00 5.80
174 175 4.335594 ACGAATATTAAAGCACTTCTGGGC 59.664 41.667 0.00 0.00 0.00 5.36
175 176 5.730568 GCACGAATATTAAAGCACTTCTGGG 60.731 44.000 0.00 0.00 0.00 4.45
176 177 5.065218 AGCACGAATATTAAAGCACTTCTGG 59.935 40.000 0.00 0.00 0.00 3.86
177 178 6.111768 AGCACGAATATTAAAGCACTTCTG 57.888 37.500 0.00 0.00 0.00 3.02
178 179 7.519008 GCATAGCACGAATATTAAAGCACTTCT 60.519 37.037 0.00 0.00 0.00 2.85
179 180 6.575201 GCATAGCACGAATATTAAAGCACTTC 59.425 38.462 0.00 0.00 0.00 3.01
180 181 6.038161 TGCATAGCACGAATATTAAAGCACTT 59.962 34.615 0.00 0.00 31.71 3.16
181 182 5.527214 TGCATAGCACGAATATTAAAGCACT 59.473 36.000 0.00 0.00 31.71 4.40
182 183 5.747565 TGCATAGCACGAATATTAAAGCAC 58.252 37.500 0.00 0.00 31.71 4.40
183 184 5.757808 TCTGCATAGCACGAATATTAAAGCA 59.242 36.000 0.00 0.00 33.79 3.91
184 185 6.074005 GTCTGCATAGCACGAATATTAAAGC 58.926 40.000 0.00 0.00 33.79 3.51
185 186 6.347725 GGGTCTGCATAGCACGAATATTAAAG 60.348 42.308 3.58 0.00 33.79 1.85
186 187 5.468746 GGGTCTGCATAGCACGAATATTAAA 59.531 40.000 3.58 0.00 33.79 1.52
187 188 4.994852 GGGTCTGCATAGCACGAATATTAA 59.005 41.667 3.58 0.00 33.79 1.40
188 189 4.039852 TGGGTCTGCATAGCACGAATATTA 59.960 41.667 3.58 0.00 33.79 0.98
189 190 3.181455 TGGGTCTGCATAGCACGAATATT 60.181 43.478 3.58 0.00 33.79 1.28
190 191 2.368548 TGGGTCTGCATAGCACGAATAT 59.631 45.455 3.58 0.00 33.79 1.28
191 192 1.760029 TGGGTCTGCATAGCACGAATA 59.240 47.619 3.58 0.00 33.79 1.75
192 193 0.541392 TGGGTCTGCATAGCACGAAT 59.459 50.000 3.58 0.00 33.79 3.34
193 194 0.323302 TTGGGTCTGCATAGCACGAA 59.677 50.000 3.58 0.00 33.79 3.85
194 195 0.391130 GTTGGGTCTGCATAGCACGA 60.391 55.000 3.58 0.00 33.79 4.35
195 196 0.673333 TGTTGGGTCTGCATAGCACG 60.673 55.000 3.58 0.00 33.79 5.34
196 197 1.533625 TTGTTGGGTCTGCATAGCAC 58.466 50.000 3.58 0.00 33.79 4.40
197 198 2.093890 CATTGTTGGGTCTGCATAGCA 58.906 47.619 3.58 0.00 36.92 3.49
198 199 2.368439 TCATTGTTGGGTCTGCATAGC 58.632 47.619 0.00 0.00 0.00 2.97
199 200 5.277490 CGTATTCATTGTTGGGTCTGCATAG 60.277 44.000 0.00 0.00 0.00 2.23
200 201 4.574421 CGTATTCATTGTTGGGTCTGCATA 59.426 41.667 0.00 0.00 0.00 3.14
201 202 3.378112 CGTATTCATTGTTGGGTCTGCAT 59.622 43.478 0.00 0.00 0.00 3.96
202 203 2.746904 CGTATTCATTGTTGGGTCTGCA 59.253 45.455 0.00 0.00 0.00 4.41
203 204 2.097466 CCGTATTCATTGTTGGGTCTGC 59.903 50.000 0.00 0.00 0.00 4.26
204 205 2.682856 CCCGTATTCATTGTTGGGTCTG 59.317 50.000 0.00 0.00 31.82 3.51
205 206 2.307686 ACCCGTATTCATTGTTGGGTCT 59.692 45.455 0.00 0.00 46.77 3.85
206 207 2.718563 ACCCGTATTCATTGTTGGGTC 58.281 47.619 0.00 0.00 46.77 4.46
207 208 2.891191 ACCCGTATTCATTGTTGGGT 57.109 45.000 0.00 0.00 44.89 4.51
208 209 4.266714 AGTTACCCGTATTCATTGTTGGG 58.733 43.478 0.00 0.00 42.50 4.12
209 210 6.988622 TTAGTTACCCGTATTCATTGTTGG 57.011 37.500 0.00 0.00 0.00 3.77
210 211 6.957077 CGTTTAGTTACCCGTATTCATTGTTG 59.043 38.462 0.00 0.00 0.00 3.33
211 212 6.092533 CCGTTTAGTTACCCGTATTCATTGTT 59.907 38.462 0.00 0.00 0.00 2.83
212 213 5.581874 CCGTTTAGTTACCCGTATTCATTGT 59.418 40.000 0.00 0.00 0.00 2.71
213 214 5.006941 CCCGTTTAGTTACCCGTATTCATTG 59.993 44.000 0.00 0.00 0.00 2.82
214 215 5.118286 CCCGTTTAGTTACCCGTATTCATT 58.882 41.667 0.00 0.00 0.00 2.57
215 216 4.162131 ACCCGTTTAGTTACCCGTATTCAT 59.838 41.667 0.00 0.00 0.00 2.57
216 217 3.513515 ACCCGTTTAGTTACCCGTATTCA 59.486 43.478 0.00 0.00 0.00 2.57
217 218 4.112634 GACCCGTTTAGTTACCCGTATTC 58.887 47.826 0.00 0.00 0.00 1.75
218 219 3.428862 CGACCCGTTTAGTTACCCGTATT 60.429 47.826 0.00 0.00 0.00 1.89
219 220 2.099098 CGACCCGTTTAGTTACCCGTAT 59.901 50.000 0.00 0.00 0.00 3.06
220 221 1.470890 CGACCCGTTTAGTTACCCGTA 59.529 52.381 0.00 0.00 0.00 4.02
221 222 0.243636 CGACCCGTTTAGTTACCCGT 59.756 55.000 0.00 0.00 0.00 5.28
222 223 0.243636 ACGACCCGTTTAGTTACCCG 59.756 55.000 0.00 0.00 36.35 5.28
233 234 4.785767 GGGAAGAAAACGACCCGT 57.214 55.556 0.00 0.00 43.97 5.28
235 236 2.674084 CGCGGGAAGAAAACGACCC 61.674 63.158 0.00 0.00 39.02 4.46
236 237 2.674084 CCGCGGGAAGAAAACGACC 61.674 63.158 20.10 0.00 0.00 4.79
237 238 1.894223 GACCGCGGGAAGAAAACGAC 61.894 60.000 31.76 1.85 0.00 4.34
238 239 1.665599 GACCGCGGGAAGAAAACGA 60.666 57.895 31.76 0.00 0.00 3.85
239 240 2.674084 GGACCGCGGGAAGAAAACG 61.674 63.158 31.76 0.00 0.00 3.60
240 241 1.302271 AGGACCGCGGGAAGAAAAC 60.302 57.895 31.76 9.67 0.00 2.43
241 242 1.302192 CAGGACCGCGGGAAGAAAA 60.302 57.895 31.76 0.00 0.00 2.29
242 243 2.167398 CTCAGGACCGCGGGAAGAAA 62.167 60.000 31.76 9.17 0.00 2.52
243 244 2.602267 TCAGGACCGCGGGAAGAA 60.602 61.111 31.76 9.06 0.00 2.52
244 245 3.068691 CTCAGGACCGCGGGAAGA 61.069 66.667 31.76 19.59 0.00 2.87
245 246 4.821589 GCTCAGGACCGCGGGAAG 62.822 72.222 31.76 18.66 0.00 3.46
257 258 1.671261 GGCTGCATATACCTCGCTCAG 60.671 57.143 0.50 0.00 0.00 3.35
258 259 0.318441 GGCTGCATATACCTCGCTCA 59.682 55.000 0.50 0.00 0.00 4.26
259 260 0.605589 AGGCTGCATATACCTCGCTC 59.394 55.000 0.50 0.00 0.00 5.03
260 261 1.546476 GTAGGCTGCATATACCTCGCT 59.454 52.381 0.50 0.00 34.92 4.93
261 262 1.272490 TGTAGGCTGCATATACCTCGC 59.728 52.381 0.00 0.00 34.92 5.03
262 263 3.660501 TTGTAGGCTGCATATACCTCG 57.339 47.619 6.01 0.00 34.92 4.63
263 264 4.211374 CGTTTTGTAGGCTGCATATACCTC 59.789 45.833 6.01 0.00 34.92 3.85
264 265 4.127171 CGTTTTGTAGGCTGCATATACCT 58.873 43.478 6.01 0.00 37.61 3.08
265 266 3.303791 GCGTTTTGTAGGCTGCATATACC 60.304 47.826 6.01 0.00 34.83 2.73
266 267 3.603857 CGCGTTTTGTAGGCTGCATATAC 60.604 47.826 6.01 4.36 35.51 1.47
267 268 2.542178 CGCGTTTTGTAGGCTGCATATA 59.458 45.455 6.01 0.00 35.51 0.86
268 269 1.330521 CGCGTTTTGTAGGCTGCATAT 59.669 47.619 6.01 0.00 35.51 1.78
269 270 0.724549 CGCGTTTTGTAGGCTGCATA 59.275 50.000 6.01 0.00 35.51 3.14
270 271 1.234615 ACGCGTTTTGTAGGCTGCAT 61.235 50.000 5.58 0.00 35.51 3.96
271 272 0.600518 TACGCGTTTTGTAGGCTGCA 60.601 50.000 20.78 0.00 35.51 4.41
272 273 0.179233 GTACGCGTTTTGTAGGCTGC 60.179 55.000 20.78 0.00 35.51 5.25
273 274 1.126113 CTGTACGCGTTTTGTAGGCTG 59.874 52.381 20.78 0.00 35.51 4.85
274 275 1.000060 TCTGTACGCGTTTTGTAGGCT 60.000 47.619 20.78 0.00 35.51 4.58
275 276 1.389106 CTCTGTACGCGTTTTGTAGGC 59.611 52.381 20.78 0.00 0.00 3.93
276 277 2.407361 CACTCTGTACGCGTTTTGTAGG 59.593 50.000 20.78 4.92 0.00 3.18
277 278 2.407361 CCACTCTGTACGCGTTTTGTAG 59.593 50.000 20.78 11.77 0.00 2.74
278 279 2.396601 CCACTCTGTACGCGTTTTGTA 58.603 47.619 20.78 0.00 0.00 2.41
279 280 1.214367 CCACTCTGTACGCGTTTTGT 58.786 50.000 20.78 7.16 0.00 2.83
280 281 0.110823 GCCACTCTGTACGCGTTTTG 60.111 55.000 20.78 7.97 0.00 2.44
281 282 0.249741 AGCCACTCTGTACGCGTTTT 60.250 50.000 20.78 0.00 0.00 2.43
282 283 0.599558 TAGCCACTCTGTACGCGTTT 59.400 50.000 20.78 0.00 0.00 3.60
283 284 0.109412 GTAGCCACTCTGTACGCGTT 60.109 55.000 20.78 0.80 0.00 4.84
284 285 0.959372 AGTAGCCACTCTGTACGCGT 60.959 55.000 19.17 19.17 0.00 6.01
285 286 0.523546 CAGTAGCCACTCTGTACGCG 60.524 60.000 3.53 3.53 30.46 6.01
286 287 0.526662 ACAGTAGCCACTCTGTACGC 59.473 55.000 0.00 0.00 42.13 4.42
287 288 1.202043 CGACAGTAGCCACTCTGTACG 60.202 57.143 0.00 0.00 43.64 3.67
288 289 2.082231 TCGACAGTAGCCACTCTGTAC 58.918 52.381 0.00 0.00 43.64 2.90
289 290 2.484742 TCGACAGTAGCCACTCTGTA 57.515 50.000 0.00 0.00 43.64 2.74
290 291 1.840737 ATCGACAGTAGCCACTCTGT 58.159 50.000 0.00 0.00 45.81 3.41
291 292 2.949451 AATCGACAGTAGCCACTCTG 57.051 50.000 0.00 0.00 37.65 3.35
292 293 3.258372 TGAAAATCGACAGTAGCCACTCT 59.742 43.478 0.00 0.00 30.46 3.24
293 294 3.585862 TGAAAATCGACAGTAGCCACTC 58.414 45.455 0.00 0.00 30.46 3.51
294 295 3.589988 CTGAAAATCGACAGTAGCCACT 58.410 45.455 0.00 0.00 34.42 4.00
295 296 2.094417 GCTGAAAATCGACAGTAGCCAC 59.906 50.000 3.10 0.00 36.62 5.01
296 297 2.346803 GCTGAAAATCGACAGTAGCCA 58.653 47.619 3.10 0.00 36.62 4.75
297 298 1.666189 GGCTGAAAATCGACAGTAGCC 59.334 52.381 12.02 12.02 41.92 3.93
298 299 2.622436 AGGCTGAAAATCGACAGTAGC 58.378 47.619 3.10 2.99 36.62 3.58
299 300 4.328440 CAGAAGGCTGAAAATCGACAGTAG 59.672 45.833 3.10 0.00 45.17 2.57
300 301 4.245660 CAGAAGGCTGAAAATCGACAGTA 58.754 43.478 3.10 0.00 45.17 2.74
301 302 3.070018 CAGAAGGCTGAAAATCGACAGT 58.930 45.455 3.10 0.00 45.17 3.55
302 303 2.417933 CCAGAAGGCTGAAAATCGACAG 59.582 50.000 0.00 0.00 45.17 3.51
303 304 2.038426 TCCAGAAGGCTGAAAATCGACA 59.962 45.455 0.00 0.00 45.17 4.35
304 305 2.699954 TCCAGAAGGCTGAAAATCGAC 58.300 47.619 0.00 0.00 45.17 4.20
305 306 3.634397 ATCCAGAAGGCTGAAAATCGA 57.366 42.857 0.00 0.00 45.17 3.59
306 307 4.666237 GAAATCCAGAAGGCTGAAAATCG 58.334 43.478 0.00 0.00 45.17 3.34
307 308 4.396166 TCGAAATCCAGAAGGCTGAAAATC 59.604 41.667 0.00 0.00 45.17 2.17
308 309 4.335416 TCGAAATCCAGAAGGCTGAAAAT 58.665 39.130 0.00 0.00 45.17 1.82
309 310 3.750371 TCGAAATCCAGAAGGCTGAAAA 58.250 40.909 0.00 0.00 45.17 2.29
310 311 3.007940 TCTCGAAATCCAGAAGGCTGAAA 59.992 43.478 0.00 0.00 45.17 2.69
311 312 2.567169 TCTCGAAATCCAGAAGGCTGAA 59.433 45.455 0.00 0.00 45.17 3.02
312 313 2.179427 TCTCGAAATCCAGAAGGCTGA 58.821 47.619 0.00 0.00 45.17 4.26
313 314 2.680312 TCTCGAAATCCAGAAGGCTG 57.320 50.000 0.00 0.00 41.93 4.85
314 315 3.703001 TTTCTCGAAATCCAGAAGGCT 57.297 42.857 0.00 0.00 30.32 4.58
315 316 3.502211 TGTTTTCTCGAAATCCAGAAGGC 59.498 43.478 0.00 0.00 30.32 4.35
316 317 5.689383 TTGTTTTCTCGAAATCCAGAAGG 57.311 39.130 0.00 0.00 30.32 3.46
317 318 6.145535 CCTTTGTTTTCTCGAAATCCAGAAG 58.854 40.000 0.00 0.00 30.32 2.85
318 319 5.507315 GCCTTTGTTTTCTCGAAATCCAGAA 60.507 40.000 0.00 0.00 0.00 3.02
319 320 4.023193 GCCTTTGTTTTCTCGAAATCCAGA 60.023 41.667 0.00 0.00 0.00 3.86
320 321 4.229876 GCCTTTGTTTTCTCGAAATCCAG 58.770 43.478 0.00 0.00 0.00 3.86
321 322 3.304391 CGCCTTTGTTTTCTCGAAATCCA 60.304 43.478 0.00 0.00 0.00 3.41
322 323 3.234386 CGCCTTTGTTTTCTCGAAATCC 58.766 45.455 0.00 0.00 0.00 3.01
323 324 3.885358 ACGCCTTTGTTTTCTCGAAATC 58.115 40.909 0.00 0.00 0.00 2.17
324 325 3.982576 ACGCCTTTGTTTTCTCGAAAT 57.017 38.095 0.00 0.00 0.00 2.17
325 326 4.121317 TCTACGCCTTTGTTTTCTCGAAA 58.879 39.130 0.00 0.00 0.00 3.46
326 327 3.719924 TCTACGCCTTTGTTTTCTCGAA 58.280 40.909 0.00 0.00 0.00 3.71
327 328 3.374220 TCTACGCCTTTGTTTTCTCGA 57.626 42.857 0.00 0.00 0.00 4.04
328 329 3.432252 ACATCTACGCCTTTGTTTTCTCG 59.568 43.478 0.00 0.00 0.00 4.04
329 330 5.358298 AACATCTACGCCTTTGTTTTCTC 57.642 39.130 0.00 0.00 0.00 2.87
330 331 5.767816 AAACATCTACGCCTTTGTTTTCT 57.232 34.783 0.00 0.00 38.72 2.52
331 332 6.254804 ACAAAAACATCTACGCCTTTGTTTTC 59.745 34.615 15.62 0.00 46.14 2.29
332 333 7.118535 AAACAAAAACATCTACGCCTTTGTTTT 59.881 29.630 14.44 11.69 46.65 2.43
333 334 5.656480 ACAAAAACATCTACGCCTTTGTTT 58.344 33.333 0.00 0.00 42.40 2.83
334 335 5.257082 ACAAAAACATCTACGCCTTTGTT 57.743 34.783 0.00 0.00 34.27 2.83
335 336 4.911514 ACAAAAACATCTACGCCTTTGT 57.088 36.364 0.00 0.00 33.39 2.83
336 337 6.582437 AAAACAAAAACATCTACGCCTTTG 57.418 33.333 0.00 0.00 0.00 2.77
357 358 4.037089 GGGAGAGCAAGTAAAACCGAAAAA 59.963 41.667 0.00 0.00 0.00 1.94
358 359 3.566742 GGGAGAGCAAGTAAAACCGAAAA 59.433 43.478 0.00 0.00 0.00 2.29
359 360 3.143728 GGGAGAGCAAGTAAAACCGAAA 58.856 45.455 0.00 0.00 0.00 3.46
360 361 2.774687 GGGAGAGCAAGTAAAACCGAA 58.225 47.619 0.00 0.00 0.00 4.30
361 362 1.337447 CGGGAGAGCAAGTAAAACCGA 60.337 52.381 0.00 0.00 42.42 4.69
362 363 1.076332 CGGGAGAGCAAGTAAAACCG 58.924 55.000 0.00 0.00 0.00 4.44
363 364 1.450025 CCGGGAGAGCAAGTAAAACC 58.550 55.000 0.00 0.00 0.00 3.27
364 365 1.002773 TCCCGGGAGAGCAAGTAAAAC 59.997 52.381 22.63 0.00 0.00 2.43
411 417 3.203716 GGGAATAACCATCCAAGTCGAC 58.796 50.000 7.70 7.70 41.20 4.20
575 582 2.357760 GTTACGCGGCTGGTTGGA 60.358 61.111 12.47 0.00 0.00 3.53
614 631 3.749373 CGTGGTCGTCGTTGTCGC 61.749 66.667 0.00 0.00 36.96 5.19
762 779 1.470996 GCCAGGGCCATGTTTGTTCA 61.471 55.000 17.55 0.00 34.56 3.18
828 845 2.282180 GGGGTTTTGAGGCGAGCA 60.282 61.111 0.00 0.00 0.00 4.26
857 883 0.837691 TTGAGCTTCTGAGGAGGGCA 60.838 55.000 0.00 0.00 0.00 5.36
889 915 1.172175 CTCAGCCAAGCTTTTCCTCC 58.828 55.000 0.00 0.00 36.40 4.30
909 935 1.812922 CTGCAGTGACCAGGCGATC 60.813 63.158 5.25 0.00 0.00 3.69
957 983 4.778415 CACAGTCCGACGAGCCCG 62.778 72.222 0.00 0.00 42.50 6.13
1575 1613 2.050442 CCTTTGTTGCCGCCGTTC 60.050 61.111 0.00 0.00 0.00 3.95
1638 1676 1.275010 TGCTCGTGCATAGACAGGAAA 59.725 47.619 8.30 0.00 45.31 3.13
1697 1736 1.238439 CCGTCACCAAGCAAGATGTT 58.762 50.000 0.00 0.00 0.00 2.71
1718 1757 2.931386 GACGATACCTGCATGCGC 59.069 61.111 14.09 0.00 39.24 6.09
1950 1989 0.105760 ATCTCCTCGTGCTCCTCCAT 60.106 55.000 0.00 0.00 0.00 3.41
2090 2164 4.507710 TGATCAAATGCTAGACGAAGCTT 58.492 39.130 0.00 0.00 43.19 3.74
2113 2187 6.462636 CGCGTAATCATGCATATACAATTGAC 59.537 38.462 13.59 0.00 36.39 3.18
2168 2245 2.623416 GGATCGGGCAAAATTAAGGAGG 59.377 50.000 0.00 0.00 0.00 4.30
2190 2267 9.378551 TGATATGCTACAGGTAAAAACTTACAG 57.621 33.333 0.00 0.00 0.00 2.74
2196 2273 9.056005 TGATGATGATATGCTACAGGTAAAAAC 57.944 33.333 0.00 0.00 0.00 2.43
2201 2278 5.710099 TCGTGATGATGATATGCTACAGGTA 59.290 40.000 0.00 0.00 0.00 3.08
2223 2300 0.109272 TTAGCCAGCTCGTGAAGTCG 60.109 55.000 0.00 0.00 0.00 4.18
2224 2301 2.159170 AGATTAGCCAGCTCGTGAAGTC 60.159 50.000 0.00 0.00 0.00 3.01
2225 2302 1.827969 AGATTAGCCAGCTCGTGAAGT 59.172 47.619 0.00 0.00 0.00 3.01
2226 2303 2.200067 CAGATTAGCCAGCTCGTGAAG 58.800 52.381 0.00 0.00 0.00 3.02
2227 2304 1.740380 GCAGATTAGCCAGCTCGTGAA 60.740 52.381 0.00 0.00 0.00 3.18
2250 2327 8.431910 AGTGGATTAGTAAAAGTGGAGTAGAA 57.568 34.615 0.00 0.00 0.00 2.10
2277 2357 0.246635 AGTGCGAACTATTCAGCGGT 59.753 50.000 0.00 0.00 33.84 5.68
2278 2358 1.852895 GTAGTGCGAACTATTCAGCGG 59.147 52.381 6.53 0.00 33.84 5.52
2279 2359 2.531912 CAGTAGTGCGAACTATTCAGCG 59.468 50.000 6.53 0.00 33.84 5.18
2280 2360 2.282820 GCAGTAGTGCGAACTATTCAGC 59.717 50.000 6.53 5.26 40.71 4.26
2293 2373 6.015027 AGTGACTGTACTAAAGCAGTAGTG 57.985 41.667 9.04 0.00 44.89 2.74
2294 2374 6.651975 AAGTGACTGTACTAAAGCAGTAGT 57.348 37.500 4.89 4.89 44.89 2.73
2308 2388 2.408050 GAGCGACATGAAAGTGACTGT 58.592 47.619 0.00 0.00 0.00 3.55
2310 2390 1.344438 TGGAGCGACATGAAAGTGACT 59.656 47.619 0.00 0.00 0.00 3.41
2313 2410 2.743664 TGATTGGAGCGACATGAAAGTG 59.256 45.455 0.00 0.00 0.00 3.16
2325 2433 1.200948 GACAGGCAAGTTGATTGGAGC 59.799 52.381 7.16 0.00 39.47 4.70
2419 2535 1.261619 GCGGAATGGCGAAAGATACAG 59.738 52.381 0.00 0.00 0.00 2.74
2476 2592 1.284657 CATATCAGCCATCGGATCGC 58.715 55.000 0.00 0.00 0.00 4.58
2552 2669 4.408821 TAGCCAGCCAACCAGCGG 62.409 66.667 0.00 0.00 38.01 5.52
2553 2670 2.821366 CTAGCCAGCCAACCAGCG 60.821 66.667 0.00 0.00 38.01 5.18
2554 2671 3.136791 GCTAGCCAGCCAACCAGC 61.137 66.667 2.29 0.00 42.37 4.85
2638 2772 2.194201 TGATCGGTGGAAAGGGAAAC 57.806 50.000 0.00 0.00 0.00 2.78
2764 2899 4.700213 TGAAGCTTATGTTTACAGGGAAGC 59.300 41.667 0.00 14.33 38.87 3.86
2804 3718 5.501156 AGAAATGGATTGTGGTACCTTCTC 58.499 41.667 14.36 4.76 0.00 2.87
2813 3727 4.503910 TCTCGTGTAGAAATGGATTGTGG 58.496 43.478 0.00 0.00 0.00 4.17
2842 3756 3.007614 AGAAGTACCAAGCATACCGTTGT 59.992 43.478 0.00 0.00 0.00 3.32
2859 3773 0.752009 TGAGCGGCCGATCTAGAAGT 60.752 55.000 39.52 7.95 0.00 3.01
2860 3774 0.385751 TTGAGCGGCCGATCTAGAAG 59.614 55.000 39.52 4.39 0.00 2.85
2861 3775 0.385751 CTTGAGCGGCCGATCTAGAA 59.614 55.000 39.48 26.81 35.94 2.10
2862 3776 0.752009 ACTTGAGCGGCCGATCTAGA 60.752 55.000 45.11 29.54 36.99 2.43
2863 3777 0.318275 GACTTGAGCGGCCGATCTAG 60.318 60.000 39.92 39.92 38.81 2.43
2864 3778 1.734137 GACTTGAGCGGCCGATCTA 59.266 57.895 39.52 32.42 0.00 1.98
2865 3779 2.496817 GACTTGAGCGGCCGATCT 59.503 61.111 39.52 23.53 0.00 2.75
2866 3780 2.586357 GGACTTGAGCGGCCGATC 60.586 66.667 35.35 35.35 0.00 3.69
2867 3781 2.954684 TTGGACTTGAGCGGCCGAT 61.955 57.895 33.48 27.37 0.00 4.18
2874 3788 7.448748 TCTAAATAAAAGGTTGGACTTGAGC 57.551 36.000 0.00 0.00 0.00 4.26
2881 3795 8.842764 AGGGATAGTTCTAAATAAAAGGTTGGA 58.157 33.333 0.00 0.00 0.00 3.53
2890 3804 8.185506 TGATACGCAGGGATAGTTCTAAATAA 57.814 34.615 0.00 0.00 0.00 1.40
2908 3822 8.841444 ACACTTCATATTTGATTTTGATACGC 57.159 30.769 0.00 0.00 0.00 4.42
2947 3862 9.574577 TCATCTACCCCCTATGTATCAAAATAT 57.425 33.333 0.00 0.00 0.00 1.28
2960 3875 2.358932 GCGGGATATCATCTACCCCCTA 60.359 54.545 4.83 0.00 39.20 3.53
2964 3879 1.135083 CGTGCGGGATATCATCTACCC 60.135 57.143 4.83 0.00 39.02 3.69
2965 3880 1.544691 ACGTGCGGGATATCATCTACC 59.455 52.381 4.83 0.00 0.00 3.18
2966 3881 2.987149 CAACGTGCGGGATATCATCTAC 59.013 50.000 4.83 0.00 0.00 2.59
3033 3948 9.013229 CAGCAGCCATGTATTATATCCTTTTTA 57.987 33.333 0.00 0.00 0.00 1.52
3036 3951 5.948162 CCAGCAGCCATGTATTATATCCTTT 59.052 40.000 0.00 0.00 0.00 3.11
3038 3953 4.080129 CCCAGCAGCCATGTATTATATCCT 60.080 45.833 0.00 0.00 0.00 3.24
3039 3954 4.202441 CCCAGCAGCCATGTATTATATCC 58.798 47.826 0.00 0.00 0.00 2.59
3040 3955 4.202441 CCCCAGCAGCCATGTATTATATC 58.798 47.826 0.00 0.00 0.00 1.63
3041 3956 3.593328 ACCCCAGCAGCCATGTATTATAT 59.407 43.478 0.00 0.00 0.00 0.86
3044 3959 1.221635 ACCCCAGCAGCCATGTATTA 58.778 50.000 0.00 0.00 0.00 0.98
3045 3960 2.010067 ACCCCAGCAGCCATGTATT 58.990 52.632 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.