Multiple sequence alignment - TraesCS2D01G351100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G351100 chr2D 100.000 7806 0 0 1 7806 449519117 449511312 0.000000e+00 14416.0
1 TraesCS2D01G351100 chr2D 94.521 219 10 2 5605 5821 79527848 79528066 3.490000e-88 337.0
2 TraesCS2D01G351100 chr2D 93.678 174 11 0 2731 2904 268894295 268894468 2.160000e-65 261.0
3 TraesCS2D01G351100 chr2A 95.969 5135 159 20 341 5442 593494315 593499434 0.000000e+00 8292.0
4 TraesCS2D01G351100 chr2A 92.809 1488 59 16 6356 7803 593501333 593502812 0.000000e+00 2111.0
5 TraesCS2D01G351100 chr2A 96.449 535 15 1 5817 6351 593499542 593500072 0.000000e+00 880.0
6 TraesCS2D01G351100 chr2A 93.296 179 10 2 2731 2907 317953336 317953158 6.010000e-66 263.0
7 TraesCS2D01G351100 chr2A 81.199 367 29 12 1 340 593494060 593494413 7.770000e-65 259.0
8 TraesCS2D01G351100 chr2A 97.273 110 3 0 5502 5611 593499448 593499557 3.720000e-43 187.0
9 TraesCS2D01G351100 chr2B 96.360 2747 74 11 1 2730 529101200 529103937 0.000000e+00 4495.0
10 TraesCS2D01G351100 chr2B 94.657 2564 100 13 2902 5455 529103920 529106456 0.000000e+00 3941.0
11 TraesCS2D01G351100 chr2B 89.533 984 56 12 6404 7345 529107407 529108385 0.000000e+00 1203.0
12 TraesCS2D01G351100 chr2B 97.043 372 11 0 5984 6355 529106712 529107083 1.850000e-175 627.0
13 TraesCS2D01G351100 chr2B 92.857 168 6 3 5817 5982 529106514 529106677 1.010000e-58 239.0
14 TraesCS2D01G351100 chr2B 94.828 58 3 0 7383 7440 529108381 529108438 3.000000e-14 91.6
15 TraesCS2D01G351100 chr7D 98.585 212 2 1 5606 5817 29555515 29555725 2.660000e-99 374.0
16 TraesCS2D01G351100 chr7D 96.809 94 3 0 5450 5543 79628337 79628430 2.920000e-34 158.0
17 TraesCS2D01G351100 chr7D 100.000 85 0 0 5457 5541 116592584 116592500 2.920000e-34 158.0
18 TraesCS2D01G351100 chr4D 98.086 209 3 1 5609 5817 89931835 89931628 5.760000e-96 363.0
19 TraesCS2D01G351100 chr3D 97.196 214 4 2 5606 5819 481706722 481706511 2.070000e-95 361.0
20 TraesCS2D01G351100 chr3D 97.802 91 2 0 5456 5546 180394993 180394903 2.920000e-34 158.0
21 TraesCS2D01G351100 chr3D 93.269 104 6 1 5440 5542 570848650 570848753 1.360000e-32 152.0
22 TraesCS2D01G351100 chr5D 96.759 216 5 2 5606 5820 537643099 537643313 7.450000e-95 359.0
23 TraesCS2D01G351100 chr5D 93.642 173 11 0 2731 2903 299073581 299073409 7.770000e-65 259.0
24 TraesCS2D01G351100 chr5D 84.925 199 22 5 2731 2927 92150030 92149838 2.220000e-45 195.0
25 TraesCS2D01G351100 chr5D 96.739 92 3 0 5457 5548 382868495 382868404 3.770000e-33 154.0
26 TraesCS2D01G351100 chr5D 96.703 91 3 0 5457 5547 411995032 411995122 1.360000e-32 152.0
27 TraesCS2D01G351100 chr1D 97.619 210 4 1 5608 5817 224575368 224575576 7.450000e-95 359.0
28 TraesCS2D01G351100 chr1D 82.812 192 26 6 4499 4688 340660994 340660808 1.740000e-36 165.0
29 TraesCS2D01G351100 chr1D 96.000 100 4 0 5457 5556 124334421 124334322 6.270000e-36 163.0
30 TraesCS2D01G351100 chr1D 94.845 97 3 1 5456 5552 47644742 47644836 4.880000e-32 150.0
31 TraesCS2D01G351100 chr5A 94.860 214 9 2 5606 5819 344504800 344504589 4.510000e-87 333.0
32 TraesCS2D01G351100 chr3A 95.283 212 6 4 5606 5817 184272625 184272418 4.510000e-87 333.0
33 TraesCS2D01G351100 chr3A 95.283 212 7 2 5606 5817 651189513 651189305 4.510000e-87 333.0
34 TraesCS2D01G351100 chr4A 92.778 180 13 0 2731 2910 584667602 584667423 2.160000e-65 261.0
35 TraesCS2D01G351100 chr5B 93.103 174 12 0 2731 2904 573003546 573003719 1.010000e-63 255.0
36 TraesCS2D01G351100 chr3B 94.048 168 7 2 2731 2898 578772874 578773038 1.300000e-62 252.0
37 TraesCS2D01G351100 chr7B 92.941 170 12 0 2731 2900 244640663 244640494 1.680000e-61 248.0
38 TraesCS2D01G351100 chr7A 92.486 173 11 1 2731 2903 503442319 503442489 6.050000e-61 246.0
39 TraesCS2D01G351100 chr7A 86.550 171 23 0 3651 3821 88933044 88932874 1.030000e-43 189.0
40 TraesCS2D01G351100 chr6D 90.000 180 18 0 3642 3821 278644742 278644563 4.710000e-57 233.0
41 TraesCS2D01G351100 chr6B 90.000 180 18 0 3642 3821 440778438 440778259 4.710000e-57 233.0
42 TraesCS2D01G351100 chr6A 90.000 180 18 0 3642 3821 402956626 402956447 4.710000e-57 233.0
43 TraesCS2D01G351100 chr1B 82.812 192 26 6 4499 4688 456267172 456266986 1.740000e-36 165.0
44 TraesCS2D01G351100 chr1A 82.292 192 27 6 4499 4688 440444571 440444385 8.110000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G351100 chr2D 449511312 449519117 7805 True 14416.0 14416 100.0000 1 7806 1 chr2D.!!$R1 7805
1 TraesCS2D01G351100 chr2A 593494060 593502812 8752 False 2345.8 8292 92.7398 1 7803 5 chr2A.!!$F1 7802
2 TraesCS2D01G351100 chr2B 529101200 529108438 7238 False 1766.1 4495 94.2130 1 7440 6 chr2B.!!$F1 7439

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 278 1.157870 CGGGCCTCGCGTGATATTTT 61.158 55.000 10.21 0.00 35.14 1.82 F
982 1028 1.470098 CCGGGCATTCTTGTGAGAAAG 59.530 52.381 0.00 0.00 44.61 2.62 F
1940 1986 1.639722 TGGAGCTGTTACTGCCAGTA 58.360 50.000 10.52 0.00 32.41 2.74 F
2112 2158 4.336280 ACAGGAGGCATTAAAGAGGAAAC 58.664 43.478 0.00 0.00 0.00 2.78 F
2744 2795 4.344865 GTGGAAGGGGCGCCTTGA 62.345 66.667 37.05 21.21 0.00 3.02 F
2974 3039 0.827368 GTGGTTTTTGGCCTTGTCCA 59.173 50.000 3.32 3.64 0.00 4.02 F
3877 3946 0.618680 TCTGTGTAGGCCTGCCAGAT 60.619 55.000 26.61 1.28 38.92 2.90 F
5641 5717 0.108756 GACCAGGTCTCACGGTTAGC 60.109 60.000 12.94 0.00 31.63 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 1285 1.073199 AAGAGGAACACCAAGGGCG 59.927 57.895 0.00 0.00 0.00 6.13 R
2744 2795 0.944386 CAACAGCTTTACCACTGCGT 59.056 50.000 0.00 0.00 37.42 5.24 R
2810 2861 2.310052 AGCCTTTCCCTACATTTCTGCT 59.690 45.455 0.00 0.00 0.00 4.24 R
2918 2981 2.919602 ACTCCTCCCCAGCAAAAATAGA 59.080 45.455 0.00 0.00 0.00 1.98 R
3877 3946 4.407621 TGCGAAAATAAGGGGAGATCTGTA 59.592 41.667 0.00 0.00 0.00 2.74 R
4309 4380 4.657814 ACCAAGGAAATAGAAAGCCAGA 57.342 40.909 0.00 0.00 0.00 3.86 R
5660 5736 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41 R
7374 8797 0.106967 GTTCATCTCAGGCCCTTCCC 60.107 60.000 0.00 0.00 34.51 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 115 3.585856 GGCGATTTGGCGGAAAGA 58.414 55.556 0.00 0.00 0.00 2.52
166 183 1.913762 AGTGGCTCCGGTGCTTAGT 60.914 57.895 26.25 15.98 0.00 2.24
214 241 5.266733 TGATCGATCAGACATGAATGTGA 57.733 39.130 23.99 0.00 41.95 3.58
251 278 1.157870 CGGGCCTCGCGTGATATTTT 61.158 55.000 10.21 0.00 35.14 1.82
287 320 3.793797 TGGACACTATGACACCATACG 57.206 47.619 0.00 0.00 34.31 3.06
396 432 6.586463 GGACACTATGACACCATATACGAATG 59.414 42.308 0.00 0.00 34.96 2.67
405 441 8.585018 TGACACCATATACGAATGATAATGTCT 58.415 33.333 0.00 0.00 32.49 3.41
485 526 1.895131 AGCTGTTGTTATTTGGGCCAG 59.105 47.619 6.23 0.00 0.00 4.85
538 579 1.504359 TGTTCGTGAGCGTTTTAGGG 58.496 50.000 0.00 0.00 39.49 3.53
640 682 3.957497 AGAGTGCATTGTTTGGGTTGTTA 59.043 39.130 0.00 0.00 0.00 2.41
797 840 6.561737 TTAGCAATTGTTGAACGGTCATTA 57.438 33.333 2.76 0.00 32.48 1.90
982 1028 1.470098 CCGGGCATTCTTGTGAGAAAG 59.530 52.381 0.00 0.00 44.61 2.62
1008 1054 2.417787 GCACCAATCAAGAATGGCTTCC 60.418 50.000 4.10 0.00 40.51 3.46
1222 1268 7.497773 AGATACCTTTTGAGCCTTAGTAACT 57.502 36.000 0.00 0.00 0.00 2.24
1652 1698 2.097036 CATGGATGGCTCTTTGCTTCA 58.903 47.619 0.00 0.00 42.39 3.02
1916 1962 2.679336 CGCTGTGTTCATCATCATTCCA 59.321 45.455 0.00 0.00 0.00 3.53
1940 1986 1.639722 TGGAGCTGTTACTGCCAGTA 58.360 50.000 10.52 0.00 32.41 2.74
2112 2158 4.336280 ACAGGAGGCATTAAAGAGGAAAC 58.664 43.478 0.00 0.00 0.00 2.78
2428 2474 8.472007 TGACTTTGGATAACATTAACAGGTTT 57.528 30.769 0.00 0.00 0.00 3.27
2469 2515 9.374838 GTTTACTTAATCCTCGATTTTACCAGA 57.625 33.333 0.00 0.00 33.95 3.86
2715 2766 7.306632 GCATCTTCAGCATTTAAGCATGATTTC 60.307 37.037 0.00 0.00 36.85 2.17
2744 2795 4.344865 GTGGAAGGGGCGCCTTGA 62.345 66.667 37.05 21.21 0.00 3.02
2974 3039 0.827368 GTGGTTTTTGGCCTTGTCCA 59.173 50.000 3.32 3.64 0.00 4.02
2993 3058 3.324268 TCCACCGGTGTAGTGTTTCATAA 59.676 43.478 31.80 0.00 33.20 1.90
3100 3166 3.193267 GCTCATCCACTGTGCCAATTTAA 59.807 43.478 1.29 0.00 38.21 1.52
3202 3268 2.569404 GGGTGTGGAGTCTCTTTCTGAT 59.431 50.000 0.00 0.00 0.00 2.90
3213 3279 1.753649 TCTTTCTGATGAGGAGCTCCG 59.246 52.381 26.95 11.83 42.08 4.63
3365 3431 4.689612 TCAGGTGCCTATTATTGGAGAC 57.310 45.455 0.00 0.00 0.00 3.36
3470 3537 6.262273 GCTAATTATAGTTGCCTAGCACCAAA 59.738 38.462 0.00 0.00 38.71 3.28
3628 3697 7.973388 TGGATGCTTATCTTCAAATTTTAACCG 59.027 33.333 0.00 0.00 0.00 4.44
3877 3946 0.618680 TCTGTGTAGGCCTGCCAGAT 60.619 55.000 26.61 1.28 38.92 2.90
3898 3967 6.870965 CAGATACAGATCTCCCCTTATTTTCG 59.129 42.308 0.00 0.00 40.68 3.46
3945 4015 2.163613 GCCCCATTCTTAGTTTGGAACG 59.836 50.000 5.11 0.00 36.23 3.95
4215 4286 3.366052 ACCACCACAATAAGATCCCAC 57.634 47.619 0.00 0.00 0.00 4.61
4222 4293 5.193728 ACCACAATAAGATCCCACCTTACAT 59.806 40.000 0.00 0.00 0.00 2.29
4309 4380 9.415544 GTTGATTTGAAGATGCAGTTTTTCTAT 57.584 29.630 0.00 0.00 0.00 1.98
4390 4462 1.354368 ACAACCCGGATGGAGAAACAT 59.646 47.619 0.73 0.00 37.49 2.71
4537 4609 2.685897 AGCTAGACGAACAAGAGGCTAG 59.314 50.000 0.00 1.23 0.00 3.42
4627 4699 9.136952 GAAATCAAAAGAACATGAGAAGAATGG 57.863 33.333 0.00 0.00 0.00 3.16
4640 4712 2.380064 AGAATGGCCACCTTTGTGAA 57.620 45.000 8.16 0.00 45.76 3.18
4647 4719 3.153919 GGCCACCTTTGTGAAATCAGTA 58.846 45.455 0.00 0.00 45.76 2.74
4817 4889 2.874849 CGAGAAGAGTTTCTGAGCCTC 58.125 52.381 0.00 0.00 43.63 4.70
5020 5092 2.629051 TCAGATCATGCTGCAGAGTTG 58.371 47.619 20.43 11.17 35.86 3.16
5031 5103 1.239968 GCAGAGTTGGTTGCAGGAGG 61.240 60.000 0.00 0.00 40.02 4.30
5261 5334 4.151798 GTGATCTTTCGCTTGCAAGTTAC 58.848 43.478 26.55 10.16 0.00 2.50
5455 5531 4.790765 TGCTTATCGATGGACTGATAGG 57.209 45.455 8.54 0.00 0.00 2.57
5456 5532 4.152647 TGCTTATCGATGGACTGATAGGT 58.847 43.478 8.54 0.00 0.00 3.08
5457 5533 5.321927 TGCTTATCGATGGACTGATAGGTA 58.678 41.667 8.54 0.00 0.00 3.08
5458 5534 5.183331 TGCTTATCGATGGACTGATAGGTAC 59.817 44.000 8.54 0.00 0.00 3.34
5459 5535 5.416326 GCTTATCGATGGACTGATAGGTACT 59.584 44.000 8.54 0.00 46.37 2.73
5460 5536 6.403855 GCTTATCGATGGACTGATAGGTACTC 60.404 46.154 8.54 0.00 41.75 2.59
5461 5537 3.752665 TCGATGGACTGATAGGTACTCC 58.247 50.000 0.00 0.00 41.75 3.85
5462 5538 2.820787 CGATGGACTGATAGGTACTCCC 59.179 54.545 0.00 0.00 41.75 4.30
5464 5540 3.596940 TGGACTGATAGGTACTCCCTC 57.403 52.381 0.00 0.00 44.81 4.30
5465 5541 3.132056 TGGACTGATAGGTACTCCCTCT 58.868 50.000 0.00 0.00 44.81 3.69
5466 5542 3.117474 TGGACTGATAGGTACTCCCTCTG 60.117 52.174 0.00 0.00 44.81 3.35
5467 5543 3.117436 GGACTGATAGGTACTCCCTCTGT 60.117 52.174 0.00 0.00 44.81 3.41
5468 5544 4.139038 GACTGATAGGTACTCCCTCTGTC 58.861 52.174 0.00 2.01 44.81 3.51
5469 5545 3.117436 ACTGATAGGTACTCCCTCTGTCC 60.117 52.174 0.00 0.00 44.81 4.02
5470 5546 2.177233 TGATAGGTACTCCCTCTGTCCC 59.823 54.545 0.00 0.00 44.81 4.46
5471 5547 1.690010 TAGGTACTCCCTCTGTCCCA 58.310 55.000 0.00 0.00 44.81 4.37
5472 5548 1.019650 AGGTACTCCCTCTGTCCCAT 58.980 55.000 0.00 0.00 40.71 4.00
5473 5549 2.224077 AGGTACTCCCTCTGTCCCATA 58.776 52.381 0.00 0.00 40.71 2.74
5474 5550 2.590611 AGGTACTCCCTCTGTCCCATAA 59.409 50.000 0.00 0.00 40.71 1.90
5475 5551 3.210074 AGGTACTCCCTCTGTCCCATAAT 59.790 47.826 0.00 0.00 40.71 1.28
5476 5552 4.422592 AGGTACTCCCTCTGTCCCATAATA 59.577 45.833 0.00 0.00 40.71 0.98
5477 5553 5.078006 AGGTACTCCCTCTGTCCCATAATAT 59.922 44.000 0.00 0.00 40.71 1.28
5478 5554 6.279682 AGGTACTCCCTCTGTCCCATAATATA 59.720 42.308 0.00 0.00 40.71 0.86
5479 5555 6.958192 GGTACTCCCTCTGTCCCATAATATAA 59.042 42.308 0.00 0.00 0.00 0.98
5480 5556 7.124448 GGTACTCCCTCTGTCCCATAATATAAG 59.876 44.444 0.00 0.00 0.00 1.73
5481 5557 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
5482 5558 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
5483 5559 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
5484 5560 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
5485 5561 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
5486 5562 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
5487 5563 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
5488 5564 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
5489 5565 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
5490 5566 7.925993 TGTCCCATAATATAAGAGCGTTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
5491 5567 7.771361 TGTCCCATAATATAAGAGCGTTTTTGA 59.229 33.333 0.00 0.00 0.00 2.69
5492 5568 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
5493 5569 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
5494 5570 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
5495 5571 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
5498 5574 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
5499 5575 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
5607 5683 4.757355 CCATGCCCTTTGCCCGGA 62.757 66.667 0.73 0.00 40.16 5.14
5608 5684 2.679642 CATGCCCTTTGCCCGGAA 60.680 61.111 0.73 0.00 40.16 4.30
5609 5685 2.119391 ATGCCCTTTGCCCGGAAA 59.881 55.556 0.73 0.00 40.16 3.13
5610 5686 1.535202 ATGCCCTTTGCCCGGAAAA 60.535 52.632 0.73 2.08 40.16 2.29
5611 5687 1.124477 ATGCCCTTTGCCCGGAAAAA 61.124 50.000 0.73 1.66 40.16 1.94
5638 5714 4.621269 AGACCAGGTCTCACGGTT 57.379 55.556 17.31 0.00 38.71 4.44
5639 5715 3.759865 AGACCAGGTCTCACGGTTA 57.240 52.632 17.31 0.00 38.71 2.85
5640 5716 1.546961 AGACCAGGTCTCACGGTTAG 58.453 55.000 17.31 0.00 38.71 2.34
5641 5717 0.108756 GACCAGGTCTCACGGTTAGC 60.109 60.000 12.94 0.00 31.63 3.09
5642 5718 0.830444 ACCAGGTCTCACGGTTAGCA 60.830 55.000 0.00 0.00 0.00 3.49
5643 5719 0.537188 CCAGGTCTCACGGTTAGCAT 59.463 55.000 0.00 0.00 0.00 3.79
5644 5720 1.645034 CAGGTCTCACGGTTAGCATG 58.355 55.000 0.00 0.00 0.00 4.06
5645 5721 1.066858 CAGGTCTCACGGTTAGCATGT 60.067 52.381 0.00 0.00 0.00 3.21
5646 5722 1.066858 AGGTCTCACGGTTAGCATGTG 60.067 52.381 0.00 0.00 34.96 3.21
5647 5723 1.067142 GGTCTCACGGTTAGCATGTGA 60.067 52.381 0.00 4.33 40.12 3.58
5650 5726 2.363788 TCACGGTTAGCATGTGAGAC 57.636 50.000 0.00 0.00 37.69 3.36
5651 5727 1.067142 TCACGGTTAGCATGTGAGACC 60.067 52.381 0.00 0.00 37.69 3.85
5652 5728 0.249398 ACGGTTAGCATGTGAGACCC 59.751 55.000 0.00 0.00 0.00 4.46
5653 5729 0.806102 CGGTTAGCATGTGAGACCCG 60.806 60.000 0.00 0.00 0.00 5.28
5654 5730 1.090052 GGTTAGCATGTGAGACCCGC 61.090 60.000 0.00 0.00 0.00 6.13
5655 5731 1.090052 GTTAGCATGTGAGACCCGCC 61.090 60.000 0.00 0.00 0.00 6.13
5656 5732 2.252072 TTAGCATGTGAGACCCGCCC 62.252 60.000 0.00 0.00 0.00 6.13
5657 5733 4.101448 GCATGTGAGACCCGCCCT 62.101 66.667 0.00 0.00 0.00 5.19
5658 5734 2.124983 CATGTGAGACCCGCCCTG 60.125 66.667 0.00 0.00 0.00 4.45
5659 5735 2.284625 ATGTGAGACCCGCCCTGA 60.285 61.111 0.00 0.00 0.00 3.86
5660 5736 1.690633 ATGTGAGACCCGCCCTGAT 60.691 57.895 0.00 0.00 0.00 2.90
5661 5737 1.976132 ATGTGAGACCCGCCCTGATG 61.976 60.000 0.00 0.00 0.00 3.07
5662 5738 3.083349 TGAGACCCGCCCTGATGG 61.083 66.667 0.00 0.00 37.09 3.51
5663 5739 2.764128 GAGACCCGCCCTGATGGA 60.764 66.667 0.00 0.00 35.39 3.41
5664 5740 2.040464 AGACCCGCCCTGATGGAT 60.040 61.111 0.00 0.00 35.39 3.41
5665 5741 2.111878 GACCCGCCCTGATGGATG 59.888 66.667 0.00 0.00 35.39 3.51
5666 5742 2.366837 ACCCGCCCTGATGGATGA 60.367 61.111 0.00 0.00 35.39 2.92
5667 5743 2.111878 CCCGCCCTGATGGATGAC 59.888 66.667 0.00 0.00 35.39 3.06
5668 5744 2.745308 CCCGCCCTGATGGATGACA 61.745 63.158 0.00 0.00 35.39 3.58
5669 5745 1.524621 CCGCCCTGATGGATGACAC 60.525 63.158 0.00 0.00 35.39 3.67
5670 5746 1.884464 CGCCCTGATGGATGACACG 60.884 63.158 0.00 0.00 35.39 4.49
5671 5747 1.221840 GCCCTGATGGATGACACGT 59.778 57.895 0.00 0.00 35.39 4.49
5672 5748 1.091771 GCCCTGATGGATGACACGTG 61.092 60.000 15.48 15.48 35.39 4.49
5673 5749 0.462581 CCCTGATGGATGACACGTGG 60.463 60.000 21.57 1.66 35.39 4.94
5674 5750 1.091771 CCTGATGGATGACACGTGGC 61.092 60.000 21.57 19.24 34.57 5.01
5675 5751 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
5677 5753 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
5678 5754 1.331756 GATGGATGACACGTGGCATTC 59.668 52.381 36.07 34.16 45.42 2.67
5679 5755 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
5680 5756 0.447801 GGATGACACGTGGCATTCAC 59.552 55.000 36.07 24.74 45.42 3.18
5681 5757 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
5682 5758 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
5683 5759 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
5684 5760 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
5685 5761 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
5686 5762 2.226437 GACACGTGGCATTCACAAATCT 59.774 45.455 18.77 0.00 46.36 2.40
5687 5763 2.226437 ACACGTGGCATTCACAAATCTC 59.774 45.455 21.57 0.00 46.36 2.75
5688 5764 2.226200 CACGTGGCATTCACAAATCTCA 59.774 45.455 7.95 0.00 46.36 3.27
5689 5765 2.884012 ACGTGGCATTCACAAATCTCAA 59.116 40.909 0.00 0.00 46.36 3.02
5690 5766 3.317711 ACGTGGCATTCACAAATCTCAAA 59.682 39.130 0.00 0.00 46.36 2.69
5691 5767 3.916172 CGTGGCATTCACAAATCTCAAAG 59.084 43.478 0.00 0.00 46.36 2.77
5692 5768 3.676646 GTGGCATTCACAAATCTCAAAGC 59.323 43.478 0.00 0.00 45.39 3.51
5693 5769 3.321396 TGGCATTCACAAATCTCAAAGCA 59.679 39.130 0.00 0.00 0.00 3.91
5694 5770 4.020928 TGGCATTCACAAATCTCAAAGCAT 60.021 37.500 0.00 0.00 0.00 3.79
5695 5771 4.565564 GGCATTCACAAATCTCAAAGCATC 59.434 41.667 0.00 0.00 0.00 3.91
5696 5772 5.408356 GCATTCACAAATCTCAAAGCATCT 58.592 37.500 0.00 0.00 0.00 2.90
5697 5773 6.405065 GGCATTCACAAATCTCAAAGCATCTA 60.405 38.462 0.00 0.00 0.00 1.98
5698 5774 7.031372 GCATTCACAAATCTCAAAGCATCTAA 58.969 34.615 0.00 0.00 0.00 2.10
5699 5775 7.705325 GCATTCACAAATCTCAAAGCATCTAAT 59.295 33.333 0.00 0.00 0.00 1.73
5700 5776 9.234384 CATTCACAAATCTCAAAGCATCTAATC 57.766 33.333 0.00 0.00 0.00 1.75
5701 5777 8.571461 TTCACAAATCTCAAAGCATCTAATCT 57.429 30.769 0.00 0.00 0.00 2.40
5702 5778 8.206325 TCACAAATCTCAAAGCATCTAATCTC 57.794 34.615 0.00 0.00 0.00 2.75
5703 5779 8.045507 TCACAAATCTCAAAGCATCTAATCTCT 58.954 33.333 0.00 0.00 0.00 3.10
5704 5780 8.336806 CACAAATCTCAAAGCATCTAATCTCTC 58.663 37.037 0.00 0.00 0.00 3.20
5705 5781 7.498570 ACAAATCTCAAAGCATCTAATCTCTCC 59.501 37.037 0.00 0.00 0.00 3.71
5706 5782 5.543507 TCTCAAAGCATCTAATCTCTCCC 57.456 43.478 0.00 0.00 0.00 4.30
5707 5783 4.346418 TCTCAAAGCATCTAATCTCTCCCC 59.654 45.833 0.00 0.00 0.00 4.81
5708 5784 3.392616 TCAAAGCATCTAATCTCTCCCCC 59.607 47.826 0.00 0.00 0.00 5.40
5724 5800 3.288099 CCCCCTGATTTCAAGTGGG 57.712 57.895 0.00 0.00 37.68 4.61
5726 5802 3.288099 CCCTGATTTCAAGTGGGGG 57.712 57.895 0.00 0.00 34.46 5.40
5741 5817 3.672503 GGGGTGGGGTGGATGCTT 61.673 66.667 0.00 0.00 0.00 3.91
5742 5818 2.445155 GGGTGGGGTGGATGCTTT 59.555 61.111 0.00 0.00 0.00 3.51
5743 5819 1.984026 GGGTGGGGTGGATGCTTTG 60.984 63.158 0.00 0.00 0.00 2.77
5744 5820 1.228862 GGTGGGGTGGATGCTTTGT 60.229 57.895 0.00 0.00 0.00 2.83
5745 5821 1.535204 GGTGGGGTGGATGCTTTGTG 61.535 60.000 0.00 0.00 0.00 3.33
5746 5822 0.539438 GTGGGGTGGATGCTTTGTGA 60.539 55.000 0.00 0.00 0.00 3.58
5747 5823 0.409092 TGGGGTGGATGCTTTGTGAT 59.591 50.000 0.00 0.00 0.00 3.06
5748 5824 1.203162 TGGGGTGGATGCTTTGTGATT 60.203 47.619 0.00 0.00 0.00 2.57
5749 5825 1.901833 GGGGTGGATGCTTTGTGATTT 59.098 47.619 0.00 0.00 0.00 2.17
5750 5826 2.354003 GGGGTGGATGCTTTGTGATTTG 60.354 50.000 0.00 0.00 0.00 2.32
5751 5827 2.299867 GGGTGGATGCTTTGTGATTTGT 59.700 45.455 0.00 0.00 0.00 2.83
5752 5828 3.319755 GGTGGATGCTTTGTGATTTGTG 58.680 45.455 0.00 0.00 0.00 3.33
5753 5829 3.005684 GGTGGATGCTTTGTGATTTGTGA 59.994 43.478 0.00 0.00 0.00 3.58
5754 5830 4.501229 GGTGGATGCTTTGTGATTTGTGAA 60.501 41.667 0.00 0.00 0.00 3.18
5755 5831 5.232463 GTGGATGCTTTGTGATTTGTGAAT 58.768 37.500 0.00 0.00 0.00 2.57
5756 5832 5.119588 GTGGATGCTTTGTGATTTGTGAATG 59.880 40.000 0.00 0.00 0.00 2.67
5757 5833 4.092383 GGATGCTTTGTGATTTGTGAATGC 59.908 41.667 0.00 0.00 0.00 3.56
5758 5834 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
5759 5835 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
5760 5836 3.998341 GCTTTGTGATTTGTGAATGCCAT 59.002 39.130 0.00 0.00 0.00 4.40
5761 5837 4.142988 GCTTTGTGATTTGTGAATGCCATG 60.143 41.667 0.00 0.00 0.00 3.66
5762 5838 4.603989 TTGTGATTTGTGAATGCCATGT 57.396 36.364 0.00 0.00 0.00 3.21
5763 5839 3.915536 TGTGATTTGTGAATGCCATGTG 58.084 40.909 0.00 0.00 0.00 3.21
5764 5840 3.321396 TGTGATTTGTGAATGCCATGTGT 59.679 39.130 0.00 0.00 0.00 3.72
5765 5841 3.922240 GTGATTTGTGAATGCCATGTGTC 59.078 43.478 0.00 0.00 0.00 3.67
5766 5842 3.573110 TGATTTGTGAATGCCATGTGTCA 59.427 39.130 0.00 0.00 0.00 3.58
5767 5843 4.221041 TGATTTGTGAATGCCATGTGTCAT 59.779 37.500 0.00 0.00 0.00 3.06
5768 5844 3.853831 TTGTGAATGCCATGTGTCATC 57.146 42.857 0.00 0.00 0.00 2.92
5769 5845 2.093890 TGTGAATGCCATGTGTCATCC 58.906 47.619 0.00 0.00 0.00 3.51
5770 5846 2.093890 GTGAATGCCATGTGTCATCCA 58.906 47.619 0.00 0.00 0.00 3.41
5771 5847 2.691526 GTGAATGCCATGTGTCATCCAT 59.308 45.455 0.00 0.00 0.00 3.41
5772 5848 2.953648 TGAATGCCATGTGTCATCCATC 59.046 45.455 0.00 0.00 0.00 3.51
5773 5849 2.740506 ATGCCATGTGTCATCCATCA 57.259 45.000 0.00 0.00 0.00 3.07
5774 5850 2.047002 TGCCATGTGTCATCCATCAG 57.953 50.000 0.00 0.00 0.00 2.90
5775 5851 1.315690 GCCATGTGTCATCCATCAGG 58.684 55.000 0.00 0.00 0.00 3.86
5784 5860 4.356979 TCCATCAGGACGGGTCTC 57.643 61.111 0.00 0.00 39.61 3.36
5785 5861 1.753078 TCCATCAGGACGGGTCTCG 60.753 63.158 0.00 0.00 39.61 4.04
5786 5862 2.105128 CATCAGGACGGGTCTCGC 59.895 66.667 0.00 0.00 43.89 5.03
5787 5863 3.518998 ATCAGGACGGGTCTCGCG 61.519 66.667 0.00 0.00 45.13 5.87
5798 5874 2.282251 TCTCGCGTGAGACCTGGT 60.282 61.111 24.28 0.00 46.25 4.00
5799 5875 2.179517 CTCGCGTGAGACCTGGTC 59.820 66.667 21.40 19.20 45.57 4.02
5800 5876 2.282251 TCGCGTGAGACCTGGTCT 60.282 61.111 28.70 28.70 46.42 3.85
5813 5889 6.882768 AGACCTGGTCTCATAGAATTCTTT 57.117 37.500 23.49 2.41 38.71 2.52
5814 5890 7.264294 AGACCTGGTCTCATAGAATTCTTTT 57.736 36.000 23.49 0.00 38.71 2.27
5815 5891 7.334858 AGACCTGGTCTCATAGAATTCTTTTC 58.665 38.462 23.49 0.00 38.71 2.29
5816 5892 6.418946 ACCTGGTCTCATAGAATTCTTTTCC 58.581 40.000 14.36 8.65 0.00 3.13
5817 5893 5.825151 CCTGGTCTCATAGAATTCTTTTCCC 59.175 44.000 14.36 7.35 0.00 3.97
5818 5894 5.755849 TGGTCTCATAGAATTCTTTTCCCC 58.244 41.667 14.36 7.87 0.00 4.81
5819 5895 5.492524 TGGTCTCATAGAATTCTTTTCCCCT 59.507 40.000 14.36 0.00 0.00 4.79
5820 5896 6.011628 TGGTCTCATAGAATTCTTTTCCCCTT 60.012 38.462 14.36 0.00 0.00 3.95
5821 5897 6.892456 GGTCTCATAGAATTCTTTTCCCCTTT 59.108 38.462 14.36 0.00 0.00 3.11
5822 5898 7.148000 GGTCTCATAGAATTCTTTTCCCCTTTG 60.148 40.741 14.36 0.00 0.00 2.77
5823 5899 6.378280 TCTCATAGAATTCTTTTCCCCTTTGC 59.622 38.462 14.36 0.00 0.00 3.68
5824 5900 5.422012 TCATAGAATTCTTTTCCCCTTTGCC 59.578 40.000 14.36 0.00 0.00 4.52
5840 5916 0.178967 TGCCCACAAAAGCATCTCCA 60.179 50.000 0.00 0.00 33.08 3.86
6150 6260 3.979495 CGGAGCTGTAATCACGTTATACC 59.021 47.826 0.00 0.00 0.00 2.73
6272 6382 2.613691 CTGCATTTTCAGGTTGATGCC 58.386 47.619 4.90 0.00 43.12 4.40
6360 7726 3.004106 GCTTGATAGGTAAATGCAGCAGG 59.996 47.826 0.00 0.00 0.00 4.85
6523 7889 3.041940 CGTGACGGCAAGGTGACC 61.042 66.667 0.00 0.00 0.00 4.02
6690 8062 3.393941 CCATCTTCCTTGCTCCTCCTATT 59.606 47.826 0.00 0.00 0.00 1.73
6694 8066 4.785376 TCTTCCTTGCTCCTCCTATTTCTT 59.215 41.667 0.00 0.00 0.00 2.52
6742 8114 0.905357 AAGGGAACATCCTCGTGGAG 59.095 55.000 12.42 6.86 46.91 3.86
6782 8154 0.383949 GCAAACGGAGGAAAACAGCA 59.616 50.000 0.00 0.00 0.00 4.41
6786 8158 1.172812 ACGGAGGAAAACAGCAAGCC 61.173 55.000 0.00 0.00 0.00 4.35
6787 8159 1.172180 CGGAGGAAAACAGCAAGCCA 61.172 55.000 0.00 0.00 0.00 4.75
6788 8160 0.600057 GGAGGAAAACAGCAAGCCAG 59.400 55.000 0.00 0.00 0.00 4.85
6920 8314 4.392216 GCGAAACGGTCAGTATTTTTCTC 58.608 43.478 0.00 0.00 0.00 2.87
6975 8370 2.937591 CTCGTTAGTGAGGCGTAAACA 58.062 47.619 0.00 0.00 32.18 2.83
7108 8518 1.298602 TGAATGAGCGCGTATGCAAT 58.701 45.000 8.43 0.00 42.97 3.56
7142 8552 0.904649 TCAGCCGATGTCAAGGTGAT 59.095 50.000 0.00 0.00 0.00 3.06
7143 8553 1.012086 CAGCCGATGTCAAGGTGATG 58.988 55.000 0.00 0.00 0.00 3.07
7144 8554 0.745845 AGCCGATGTCAAGGTGATGC 60.746 55.000 0.00 0.00 0.00 3.91
7145 8555 0.745845 GCCGATGTCAAGGTGATGCT 60.746 55.000 0.00 0.00 0.00 3.79
7177 8589 3.181474 GGAGAGTGTAATACAGTGGCTCC 60.181 52.174 15.75 15.75 36.22 4.70
7233 8651 2.213499 GGCTCTCGTGGATTGTAATGG 58.787 52.381 0.00 0.00 0.00 3.16
7294 8716 2.093973 ACGGCCTTGAAGTCATGTCTAG 60.094 50.000 0.00 0.00 0.00 2.43
7404 8831 5.118990 GCCTGAGATGAACTAACTGCATAA 58.881 41.667 0.00 0.00 0.00 1.90
7447 8874 0.882474 ACTGCTCCGTAGAGTGTCAC 59.118 55.000 0.00 0.00 42.59 3.67
7453 8880 0.168348 CCGTAGAGTGTCACCGTCTG 59.832 60.000 0.00 0.00 0.00 3.51
7467 8894 2.236395 ACCGTCTGGAGGAAAGGTAATG 59.764 50.000 0.00 0.00 36.11 1.90
7468 8895 2.236395 CCGTCTGGAGGAAAGGTAATGT 59.764 50.000 0.00 0.00 37.49 2.71
7469 8896 3.449737 CCGTCTGGAGGAAAGGTAATGTA 59.550 47.826 0.00 0.00 37.49 2.29
7471 8898 5.396436 CCGTCTGGAGGAAAGGTAATGTAAT 60.396 44.000 0.00 0.00 37.49 1.89
7472 8899 5.523916 CGTCTGGAGGAAAGGTAATGTAATG 59.476 44.000 0.00 0.00 0.00 1.90
7473 8900 6.415573 GTCTGGAGGAAAGGTAATGTAATGT 58.584 40.000 0.00 0.00 0.00 2.71
7517 8945 5.352293 TCTGGTGTCTTTGATTGATGAATCG 59.648 40.000 0.30 0.00 40.96 3.34
7518 8946 5.003160 TGGTGTCTTTGATTGATGAATCGT 58.997 37.500 0.30 0.00 40.96 3.73
7519 8947 6.169800 TGGTGTCTTTGATTGATGAATCGTA 58.830 36.000 0.30 0.00 40.96 3.43
7533 8961 6.821160 TGATGAATCGTAATAAGGCACAAAGA 59.179 34.615 0.00 0.00 0.00 2.52
7641 9069 9.419297 GGATAAAAACTAAATTTCTGGTGAACC 57.581 33.333 0.00 0.00 31.02 3.62
7662 9090 4.019231 ACCCTACCTTCTCATGAAAACTCC 60.019 45.833 0.00 0.00 0.00 3.85
7694 9122 9.255304 TCAATTGTAGCAATTTTAACAACTTCC 57.745 29.630 5.13 0.00 34.89 3.46
7732 9160 4.281182 TCAGGAGTAAACCACTGAGTTCTC 59.719 45.833 0.00 0.00 37.72 2.87
7734 9162 4.039366 AGGAGTAAACCACTGAGTTCTCAC 59.961 45.833 0.00 0.00 37.72 3.51
7737 9165 1.410004 AACCACTGAGTTCTCACGGA 58.590 50.000 15.94 0.00 0.00 4.69
7749 9177 4.127907 GTTCTCACGGAGGATAATTTCCC 58.872 47.826 1.76 0.00 46.81 3.97
7788 9216 3.717400 TGGAGTAGCTAAGCATTCTCG 57.283 47.619 0.00 0.00 0.00 4.04
7804 9232 7.927048 AGCATTCTCGGTAACATAAATTAACC 58.073 34.615 0.00 0.00 0.00 2.85
7805 9233 7.773690 AGCATTCTCGGTAACATAAATTAACCT 59.226 33.333 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 112 0.468226 TGGCGGGCGATCTATTTCTT 59.532 50.000 0.00 0.00 0.00 2.52
111 113 0.034059 CTGGCGGGCGATCTATTTCT 59.966 55.000 0.00 0.00 0.00 2.52
112 114 1.569479 GCTGGCGGGCGATCTATTTC 61.569 60.000 0.00 0.00 0.00 2.17
113 115 1.598130 GCTGGCGGGCGATCTATTT 60.598 57.895 0.00 0.00 0.00 1.40
166 183 1.295792 GTAAATTCCGCCATCGCTCA 58.704 50.000 0.00 0.00 0.00 4.26
170 187 1.663695 ACCTGTAAATTCCGCCATCG 58.336 50.000 0.00 0.00 0.00 3.84
174 191 3.926821 TCAAAACCTGTAAATTCCGCC 57.073 42.857 0.00 0.00 0.00 6.13
214 241 2.223829 CCCGAAGACTAATCGCATCACT 60.224 50.000 0.00 0.00 38.93 3.41
251 278 9.559732 CATAGTGTCCATCAATTACTGGATTTA 57.440 33.333 10.46 5.67 43.20 1.40
336 372 8.900781 CAGTCACTGGATTTGAAATATCAATCT 58.099 33.333 0.00 0.00 44.70 2.40
461 502 3.954258 GGCCCAAATAACAACAGCTAGAT 59.046 43.478 0.00 0.00 0.00 1.98
485 526 3.684788 ACATCGCCAATAACTTCACAGTC 59.315 43.478 0.00 0.00 30.45 3.51
538 579 2.409870 CGGCTTGTTCTGGGGATGC 61.410 63.158 0.00 0.00 0.00 3.91
640 682 7.092716 CAGCCATAGTTAGCTTTCAAACAATT 58.907 34.615 0.00 0.00 37.18 2.32
797 840 5.187772 TGGTCTATCAGTCTTGCATAACAGT 59.812 40.000 0.00 0.00 0.00 3.55
982 1028 2.167075 CCATTCTTGATTGGTGCTTCCC 59.833 50.000 4.01 0.00 34.77 3.97
1008 1054 2.573369 CTTCTCCTGATGATTGCCCTG 58.427 52.381 0.00 0.00 0.00 4.45
1210 1256 2.027100 GCAGGAACCAGTTACTAAGGCT 60.027 50.000 0.00 0.00 31.24 4.58
1239 1285 1.073199 AAGAGGAACACCAAGGGCG 59.927 57.895 0.00 0.00 0.00 6.13
1356 1402 8.801882 TCTTTCCATTCGTAATACCAGATTTT 57.198 30.769 0.00 0.00 0.00 1.82
1615 1661 2.494471 CCATGAAAATGAGCAAGGCAGA 59.506 45.455 0.00 0.00 0.00 4.26
1916 1962 2.025981 TGGCAGTAACAGCTCCATGAAT 60.026 45.455 0.00 0.00 0.00 2.57
2112 2158 4.340097 TGCATATTCCATCCTTGCTTTCAG 59.660 41.667 0.00 0.00 34.47 3.02
2469 2515 6.882610 TCTGCAGAAAAATGTAAGTGTGAT 57.117 33.333 15.67 0.00 0.00 3.06
2715 2766 2.700897 CCCCTTCCACTAGTCCAGTATG 59.299 54.545 0.00 0.00 34.98 2.39
2744 2795 0.944386 CAACAGCTTTACCACTGCGT 59.056 50.000 0.00 0.00 37.42 5.24
2810 2861 2.310052 AGCCTTTCCCTACATTTCTGCT 59.690 45.455 0.00 0.00 0.00 4.24
2918 2981 2.919602 ACTCCTCCCCAGCAAAAATAGA 59.080 45.455 0.00 0.00 0.00 1.98
2974 3039 5.416271 AGATTATGAAACACTACACCGGT 57.584 39.130 0.00 0.00 0.00 5.28
2993 3058 9.941664 CGAGCTGTCATTTCATTAAATAAAGAT 57.058 29.630 0.00 0.00 33.45 2.40
3202 3268 3.749064 GCGTGTCGGAGCTCCTCA 61.749 66.667 29.73 23.79 31.08 3.86
3470 3537 8.330993 AGGAAATATTCAAATTCTTGGCCAAAT 58.669 29.630 20.91 8.37 33.01 2.32
3877 3946 4.407621 TGCGAAAATAAGGGGAGATCTGTA 59.592 41.667 0.00 0.00 0.00 2.74
3945 4015 9.383519 TCAACATCTTTATAACCTTGAGATGAC 57.616 33.333 22.34 0.00 43.93 3.06
4007 4077 9.170584 GCAAATAGTCTGAGAAAAACAGTTAAC 57.829 33.333 0.00 0.00 36.81 2.01
4012 4082 8.749499 CAAAAGCAAATAGTCTGAGAAAAACAG 58.251 33.333 0.00 0.00 36.80 3.16
4046 4116 6.257849 TCCTTGTACAAGCGATATCACATTTC 59.742 38.462 27.05 0.00 37.11 2.17
4309 4380 4.657814 ACCAAGGAAATAGAAAGCCAGA 57.342 40.909 0.00 0.00 0.00 3.86
4537 4609 6.981722 TCCTTCAAAGCCAAATCTTCTTTAC 58.018 36.000 0.00 0.00 0.00 2.01
4627 4699 4.846779 TTACTGATTTCACAAAGGTGGC 57.153 40.909 0.00 0.00 45.32 5.01
4817 4889 8.195436 TCTCCAACTCATACCTCTTTATTTACG 58.805 37.037 0.00 0.00 0.00 3.18
5020 5092 2.959030 AGAAACTTTTCCTCCTGCAACC 59.041 45.455 0.00 0.00 37.92 3.77
5261 5334 9.559732 TGGATGTAATGAACTATCCAACTATTG 57.440 33.333 0.00 0.00 40.13 1.90
5430 5506 3.186909 TCAGTCCATCGATAAGCAAACG 58.813 45.455 0.00 0.00 0.00 3.60
5466 5542 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
5467 5543 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
5468 5544 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
5469 5545 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
5472 5548 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
5473 5549 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
5474 5550 7.817962 ACACTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 22.95 0.00 45.69 0.86
5475 5551 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
5476 5552 5.989777 ACACTAGTGTCAAAAACGCTCTTAT 59.010 36.000 22.95 0.00 45.69 1.73
5477 5553 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
5478 5554 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
5479 5555 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
5480 5556 4.743644 ACTACACTAGTGTCAAAAACGCTC 59.256 41.667 31.11 0.00 45.69 5.03
5493 5569 6.525629 AGAGCATTTTTGACACTACACTAGT 58.474 36.000 0.00 0.00 40.28 2.57
5494 5570 7.426929 AAGAGCATTTTTGACACTACACTAG 57.573 36.000 0.00 0.00 0.00 2.57
5496 5572 7.986085 ATAAGAGCATTTTTGACACTACACT 57.014 32.000 0.00 0.00 0.00 3.55
5512 5588 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
5621 5697 1.546961 CTAACCGTGAGACCTGGTCT 58.453 55.000 28.70 28.70 46.42 3.85
5622 5698 0.108756 GCTAACCGTGAGACCTGGTC 60.109 60.000 19.20 19.20 34.11 4.02
5623 5699 0.830444 TGCTAACCGTGAGACCTGGT 60.830 55.000 0.00 0.00 37.68 4.00
5624 5700 0.537188 ATGCTAACCGTGAGACCTGG 59.463 55.000 0.00 0.00 0.00 4.45
5625 5701 1.066858 ACATGCTAACCGTGAGACCTG 60.067 52.381 0.00 0.00 34.47 4.00
5626 5702 1.066858 CACATGCTAACCGTGAGACCT 60.067 52.381 0.00 0.00 34.47 3.85
5627 5703 1.067142 TCACATGCTAACCGTGAGACC 60.067 52.381 0.00 0.00 34.83 3.85
5628 5704 2.363788 TCACATGCTAACCGTGAGAC 57.636 50.000 0.00 0.00 34.83 3.36
5631 5707 1.067142 GGTCTCACATGCTAACCGTGA 60.067 52.381 0.00 0.00 37.33 4.35
5632 5708 1.359848 GGTCTCACATGCTAACCGTG 58.640 55.000 0.00 0.00 36.50 4.94
5633 5709 0.249398 GGGTCTCACATGCTAACCGT 59.751 55.000 0.00 0.00 0.00 4.83
5634 5710 0.806102 CGGGTCTCACATGCTAACCG 60.806 60.000 0.00 0.00 0.00 4.44
5635 5711 1.090052 GCGGGTCTCACATGCTAACC 61.090 60.000 0.00 0.00 0.00 2.85
5636 5712 1.090052 GGCGGGTCTCACATGCTAAC 61.090 60.000 0.00 0.00 0.00 2.34
5637 5713 1.220749 GGCGGGTCTCACATGCTAA 59.779 57.895 0.00 0.00 0.00 3.09
5638 5714 2.731571 GGGCGGGTCTCACATGCTA 61.732 63.158 0.00 0.00 0.00 3.49
5639 5715 4.101448 GGGCGGGTCTCACATGCT 62.101 66.667 0.00 0.00 0.00 3.79
5640 5716 4.101448 AGGGCGGGTCTCACATGC 62.101 66.667 0.00 0.00 0.00 4.06
5641 5717 1.976132 ATCAGGGCGGGTCTCACATG 61.976 60.000 0.00 0.00 0.00 3.21
5642 5718 1.690633 ATCAGGGCGGGTCTCACAT 60.691 57.895 0.00 0.00 0.00 3.21
5643 5719 2.284625 ATCAGGGCGGGTCTCACA 60.285 61.111 0.00 0.00 0.00 3.58
5644 5720 2.187946 CATCAGGGCGGGTCTCAC 59.812 66.667 0.00 0.00 0.00 3.51
5645 5721 2.896677 ATCCATCAGGGCGGGTCTCA 62.897 60.000 0.00 0.00 36.21 3.27
5646 5722 2.143419 ATCCATCAGGGCGGGTCTC 61.143 63.158 0.00 0.00 36.21 3.36
5647 5723 2.040464 ATCCATCAGGGCGGGTCT 60.040 61.111 0.00 0.00 36.21 3.85
5648 5724 2.111878 CATCCATCAGGGCGGGTC 59.888 66.667 0.00 0.00 36.21 4.46
5649 5725 2.366837 TCATCCATCAGGGCGGGT 60.367 61.111 0.00 0.00 36.21 5.28
5650 5726 2.111878 GTCATCCATCAGGGCGGG 59.888 66.667 0.00 0.00 36.21 6.13
5651 5727 1.524621 GTGTCATCCATCAGGGCGG 60.525 63.158 0.00 0.00 36.21 6.13
5652 5728 1.884464 CGTGTCATCCATCAGGGCG 60.884 63.158 0.00 0.00 36.21 6.13
5653 5729 1.091771 CACGTGTCATCCATCAGGGC 61.092 60.000 7.58 0.00 36.21 5.19
5654 5730 0.462581 CCACGTGTCATCCATCAGGG 60.463 60.000 15.65 0.00 34.83 4.45
5655 5731 1.091771 GCCACGTGTCATCCATCAGG 61.092 60.000 15.65 0.00 0.00 3.86
5656 5732 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
5657 5733 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
5658 5734 1.331756 GAATGCCACGTGTCATCCATC 59.668 52.381 13.12 3.25 0.00 3.51
5659 5735 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
5660 5736 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
5661 5737 0.447801 GTGAATGCCACGTGTCATCC 59.552 55.000 13.12 0.00 35.86 3.51
5662 5738 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
5670 5746 3.676646 GCTTTGAGATTTGTGAATGCCAC 59.323 43.478 0.00 0.00 45.88 5.01
5671 5747 3.321396 TGCTTTGAGATTTGTGAATGCCA 59.679 39.130 0.00 0.00 0.00 4.92
5672 5748 3.916761 TGCTTTGAGATTTGTGAATGCC 58.083 40.909 0.00 0.00 0.00 4.40
5673 5749 5.408356 AGATGCTTTGAGATTTGTGAATGC 58.592 37.500 0.00 0.00 0.00 3.56
5674 5750 9.234384 GATTAGATGCTTTGAGATTTGTGAATG 57.766 33.333 0.00 0.00 0.00 2.67
5675 5751 9.186837 AGATTAGATGCTTTGAGATTTGTGAAT 57.813 29.630 0.00 0.00 0.00 2.57
5676 5752 8.571461 AGATTAGATGCTTTGAGATTTGTGAA 57.429 30.769 0.00 0.00 0.00 3.18
5677 5753 8.045507 AGAGATTAGATGCTTTGAGATTTGTGA 58.954 33.333 0.00 0.00 0.00 3.58
5678 5754 8.211116 AGAGATTAGATGCTTTGAGATTTGTG 57.789 34.615 0.00 0.00 0.00 3.33
5679 5755 7.498570 GGAGAGATTAGATGCTTTGAGATTTGT 59.501 37.037 0.00 0.00 0.00 2.83
5680 5756 7.041235 GGGAGAGATTAGATGCTTTGAGATTTG 60.041 40.741 0.00 0.00 0.00 2.32
5681 5757 6.997476 GGGAGAGATTAGATGCTTTGAGATTT 59.003 38.462 0.00 0.00 0.00 2.17
5682 5758 6.465607 GGGGAGAGATTAGATGCTTTGAGATT 60.466 42.308 0.00 0.00 0.00 2.40
5683 5759 5.012975 GGGGAGAGATTAGATGCTTTGAGAT 59.987 44.000 0.00 0.00 0.00 2.75
5684 5760 4.346418 GGGGAGAGATTAGATGCTTTGAGA 59.654 45.833 0.00 0.00 0.00 3.27
5685 5761 4.504689 GGGGGAGAGATTAGATGCTTTGAG 60.505 50.000 0.00 0.00 0.00 3.02
5686 5762 3.392616 GGGGGAGAGATTAGATGCTTTGA 59.607 47.826 0.00 0.00 0.00 2.69
5687 5763 3.749226 GGGGGAGAGATTAGATGCTTTG 58.251 50.000 0.00 0.00 0.00 2.77
5706 5782 3.288099 CCCACTTGAAATCAGGGGG 57.712 57.895 6.84 6.84 45.21 5.40
5708 5784 3.288099 CCCCCACTTGAAATCAGGG 57.712 57.895 0.00 0.00 39.29 4.45
5724 5800 3.238197 AAAGCATCCACCCCACCCC 62.238 63.158 0.00 0.00 0.00 4.95
5725 5801 1.984026 CAAAGCATCCACCCCACCC 60.984 63.158 0.00 0.00 0.00 4.61
5726 5802 1.228862 ACAAAGCATCCACCCCACC 60.229 57.895 0.00 0.00 0.00 4.61
5727 5803 0.539438 TCACAAAGCATCCACCCCAC 60.539 55.000 0.00 0.00 0.00 4.61
5728 5804 0.409092 ATCACAAAGCATCCACCCCA 59.591 50.000 0.00 0.00 0.00 4.96
5729 5805 1.560505 AATCACAAAGCATCCACCCC 58.439 50.000 0.00 0.00 0.00 4.95
5730 5806 2.299867 ACAAATCACAAAGCATCCACCC 59.700 45.455 0.00 0.00 0.00 4.61
5731 5807 3.005684 TCACAAATCACAAAGCATCCACC 59.994 43.478 0.00 0.00 0.00 4.61
5732 5808 4.241590 TCACAAATCACAAAGCATCCAC 57.758 40.909 0.00 0.00 0.00 4.02
5733 5809 4.933505 TTCACAAATCACAAAGCATCCA 57.066 36.364 0.00 0.00 0.00 3.41
5734 5810 4.092383 GCATTCACAAATCACAAAGCATCC 59.908 41.667 0.00 0.00 0.00 3.51
5735 5811 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
5736 5812 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
5737 5813 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
5738 5814 3.391965 TGGCATTCACAAATCACAAAGC 58.608 40.909 0.00 0.00 0.00 3.51
5739 5815 4.992319 ACATGGCATTCACAAATCACAAAG 59.008 37.500 0.00 0.00 0.00 2.77
5740 5816 4.750598 CACATGGCATTCACAAATCACAAA 59.249 37.500 0.00 0.00 0.00 2.83
5741 5817 4.202233 ACACATGGCATTCACAAATCACAA 60.202 37.500 0.00 0.00 0.00 3.33
5742 5818 3.321396 ACACATGGCATTCACAAATCACA 59.679 39.130 0.00 0.00 0.00 3.58
5743 5819 3.916761 ACACATGGCATTCACAAATCAC 58.083 40.909 0.00 0.00 0.00 3.06
5744 5820 3.573110 TGACACATGGCATTCACAAATCA 59.427 39.130 0.00 0.00 0.00 2.57
5745 5821 4.177165 TGACACATGGCATTCACAAATC 57.823 40.909 0.00 0.00 0.00 2.17
5746 5822 4.382254 GGATGACACATGGCATTCACAAAT 60.382 41.667 0.78 0.00 45.42 2.32
5747 5823 3.056678 GGATGACACATGGCATTCACAAA 60.057 43.478 0.78 0.00 45.42 2.83
5748 5824 2.492881 GGATGACACATGGCATTCACAA 59.507 45.455 0.78 0.00 45.42 3.33
5749 5825 2.093890 GGATGACACATGGCATTCACA 58.906 47.619 0.78 0.00 45.42 3.58
5750 5826 2.093890 TGGATGACACATGGCATTCAC 58.906 47.619 4.43 0.00 43.95 3.18
5751 5827 2.510928 TGGATGACACATGGCATTCA 57.489 45.000 4.43 4.43 46.54 2.57
5752 5828 2.953648 TGATGGATGACACATGGCATTC 59.046 45.455 0.78 0.00 45.42 2.67
5753 5829 2.956333 CTGATGGATGACACATGGCATT 59.044 45.455 0.78 0.00 45.42 3.56
5755 5831 1.409101 CCTGATGGATGACACATGGCA 60.409 52.381 0.00 0.00 37.54 4.92
5756 5832 1.134007 TCCTGATGGATGACACATGGC 60.134 52.381 0.00 0.00 37.46 4.40
5757 5833 2.569059 GTCCTGATGGATGACACATGG 58.431 52.381 0.00 0.00 45.29 3.66
5765 5841 0.390860 GAGACCCGTCCTGATGGATG 59.609 60.000 6.98 0.00 45.29 3.51
5766 5842 1.109920 CGAGACCCGTCCTGATGGAT 61.110 60.000 6.98 0.00 45.29 3.41
5767 5843 1.753078 CGAGACCCGTCCTGATGGA 60.753 63.158 6.98 0.00 39.90 3.41
5768 5844 2.808315 CGAGACCCGTCCTGATGG 59.192 66.667 0.00 0.00 37.23 3.51
5769 5845 2.105128 GCGAGACCCGTCCTGATG 59.895 66.667 0.00 0.00 41.15 3.07
5770 5846 3.518998 CGCGAGACCCGTCCTGAT 61.519 66.667 0.00 0.00 41.15 2.90
5772 5848 4.778415 CACGCGAGACCCGTCCTG 62.778 72.222 15.93 0.00 41.15 3.86
5774 5850 4.477975 CTCACGCGAGACCCGTCC 62.478 72.222 15.93 0.00 42.34 4.79
5775 5851 3.429141 TCTCACGCGAGACCCGTC 61.429 66.667 15.93 0.00 43.55 4.79
5781 5857 2.282251 ACCAGGTCTCACGCGAGA 60.282 61.111 15.93 10.37 46.28 4.04
5782 5858 2.179517 GACCAGGTCTCACGCGAG 59.820 66.667 15.93 4.59 40.98 5.03
5783 5859 2.282251 AGACCAGGTCTCACGCGA 60.282 61.111 17.31 0.00 38.71 5.87
5790 5866 6.882768 AAAGAATTCTATGAGACCAGGTCT 57.117 37.500 23.18 23.18 46.42 3.85
5791 5867 6.540551 GGAAAAGAATTCTATGAGACCAGGTC 59.459 42.308 12.25 12.25 0.00 3.85
5792 5868 6.418946 GGAAAAGAATTCTATGAGACCAGGT 58.581 40.000 8.75 0.00 0.00 4.00
5793 5869 5.825151 GGGAAAAGAATTCTATGAGACCAGG 59.175 44.000 8.75 0.00 0.00 4.45
5794 5870 5.825151 GGGGAAAAGAATTCTATGAGACCAG 59.175 44.000 8.75 0.00 0.00 4.00
5795 5871 5.492524 AGGGGAAAAGAATTCTATGAGACCA 59.507 40.000 8.75 0.00 0.00 4.02
5796 5872 6.007485 AGGGGAAAAGAATTCTATGAGACC 57.993 41.667 8.75 7.54 0.00 3.85
5797 5873 7.629437 GCAAAGGGGAAAAGAATTCTATGAGAC 60.629 40.741 8.75 0.00 0.00 3.36
5798 5874 6.378280 GCAAAGGGGAAAAGAATTCTATGAGA 59.622 38.462 8.75 0.00 0.00 3.27
5799 5875 6.406288 GGCAAAGGGGAAAAGAATTCTATGAG 60.406 42.308 8.75 0.00 0.00 2.90
5800 5876 5.422012 GGCAAAGGGGAAAAGAATTCTATGA 59.578 40.000 8.75 0.00 0.00 2.15
5801 5877 5.395657 GGGCAAAGGGGAAAAGAATTCTATG 60.396 44.000 8.75 0.00 0.00 2.23
5802 5878 4.716784 GGGCAAAGGGGAAAAGAATTCTAT 59.283 41.667 8.75 0.41 0.00 1.98
5803 5879 4.093743 GGGCAAAGGGGAAAAGAATTCTA 58.906 43.478 8.75 0.00 0.00 2.10
5804 5880 2.906389 GGGCAAAGGGGAAAAGAATTCT 59.094 45.455 0.88 0.88 0.00 2.40
5805 5881 2.637382 TGGGCAAAGGGGAAAAGAATTC 59.363 45.455 0.00 0.00 0.00 2.17
5806 5882 2.371841 GTGGGCAAAGGGGAAAAGAATT 59.628 45.455 0.00 0.00 0.00 2.17
5807 5883 1.977854 GTGGGCAAAGGGGAAAAGAAT 59.022 47.619 0.00 0.00 0.00 2.40
5808 5884 1.343478 TGTGGGCAAAGGGGAAAAGAA 60.343 47.619 0.00 0.00 0.00 2.52
5809 5885 0.263172 TGTGGGCAAAGGGGAAAAGA 59.737 50.000 0.00 0.00 0.00 2.52
5810 5886 1.127343 TTGTGGGCAAAGGGGAAAAG 58.873 50.000 0.00 0.00 0.00 2.27
5811 5887 1.584724 TTTGTGGGCAAAGGGGAAAA 58.415 45.000 0.00 0.00 39.43 2.29
5812 5888 1.488393 CTTTTGTGGGCAAAGGGGAAA 59.512 47.619 0.00 0.00 44.32 3.13
5813 5889 1.127343 CTTTTGTGGGCAAAGGGGAA 58.873 50.000 0.00 0.00 44.32 3.97
5814 5890 1.406860 GCTTTTGTGGGCAAAGGGGA 61.407 55.000 4.78 0.00 44.32 4.81
5815 5891 1.071299 GCTTTTGTGGGCAAAGGGG 59.929 57.895 4.78 0.00 44.32 4.79
5816 5892 0.397564 ATGCTTTTGTGGGCAAAGGG 59.602 50.000 4.78 0.00 44.32 3.95
5817 5893 1.345415 AGATGCTTTTGTGGGCAAAGG 59.655 47.619 0.00 0.00 44.32 3.11
5818 5894 2.611224 GGAGATGCTTTTGTGGGCAAAG 60.611 50.000 0.00 0.00 44.32 2.77
5819 5895 1.344114 GGAGATGCTTTTGTGGGCAAA 59.656 47.619 0.00 0.00 41.90 3.68
5820 5896 0.968405 GGAGATGCTTTTGTGGGCAA 59.032 50.000 0.00 0.00 41.90 4.52
5821 5897 0.178967 TGGAGATGCTTTTGTGGGCA 60.179 50.000 0.00 0.00 42.80 5.36
5822 5898 1.134907 CATGGAGATGCTTTTGTGGGC 60.135 52.381 0.00 0.00 0.00 5.36
5823 5899 2.953466 CATGGAGATGCTTTTGTGGG 57.047 50.000 0.00 0.00 0.00 4.61
5840 5916 6.446318 TGTTCGCTTCTCTTTTAATTTGCAT 58.554 32.000 0.00 0.00 0.00 3.96
5844 5920 6.981722 ACCATGTTCGCTTCTCTTTTAATTT 58.018 32.000 0.00 0.00 0.00 1.82
5921 5998 8.418597 AAAGTTGAAGGTAGTGATCACTAGTA 57.581 34.615 31.31 13.78 43.84 1.82
5922 5999 6.919775 AAGTTGAAGGTAGTGATCACTAGT 57.080 37.500 31.31 20.48 43.84 2.57
5923 6000 7.607250 AGAAAGTTGAAGGTAGTGATCACTAG 58.393 38.462 31.31 0.00 43.84 2.57
5924 6001 7.540474 AGAAAGTTGAAGGTAGTGATCACTA 57.460 36.000 27.96 27.96 42.54 2.74
6272 6382 8.489990 TCTCTTTCTCTAATTTCTGAAGCATG 57.510 34.615 0.00 0.00 0.00 4.06
6523 7889 0.461961 CTGCTTCTACCTCTTCCGGG 59.538 60.000 0.00 0.00 0.00 5.73
6690 8062 7.012704 GGCACATGAGCAGATAAAATCTAAGAA 59.987 37.037 17.11 0.00 37.58 2.52
6694 8066 5.933617 AGGCACATGAGCAGATAAAATCTA 58.066 37.500 17.11 0.00 37.58 1.98
6782 8154 2.617274 GCGCCGTTTCTTCTGGCTT 61.617 57.895 0.00 0.00 46.67 4.35
6786 8158 3.414700 AGCGCGCCGTTTCTTCTG 61.415 61.111 30.33 0.00 0.00 3.02
6787 8159 3.414700 CAGCGCGCCGTTTCTTCT 61.415 61.111 30.33 1.73 0.00 2.85
6788 8160 2.240612 AATCAGCGCGCCGTTTCTTC 62.241 55.000 30.33 0.00 0.00 2.87
6901 8289 5.050567 GTCACGAGAAAAATACTGACCGTTT 60.051 40.000 0.00 0.00 0.00 3.60
6902 8290 4.446719 GTCACGAGAAAAATACTGACCGTT 59.553 41.667 0.00 0.00 0.00 4.44
6903 8291 3.985925 GTCACGAGAAAAATACTGACCGT 59.014 43.478 0.00 0.00 0.00 4.83
6955 8349 2.915463 CTGTTTACGCCTCACTAACGAG 59.085 50.000 0.00 0.00 0.00 4.18
6975 8370 2.808543 GGATGTTGAAACTTCAGTCGCT 59.191 45.455 10.23 0.00 38.61 4.93
7142 8552 1.073722 CTCTCCCCACTTGCAAGCA 59.926 57.895 26.27 4.57 0.00 3.91
7143 8553 1.073897 ACTCTCCCCACTTGCAAGC 59.926 57.895 26.27 0.00 0.00 4.01
7144 8554 0.109342 ACACTCTCCCCACTTGCAAG 59.891 55.000 24.84 24.84 0.00 4.01
7145 8555 1.429930 TACACTCTCCCCACTTGCAA 58.570 50.000 0.00 0.00 0.00 4.08
7374 8797 0.106967 GTTCATCTCAGGCCCTTCCC 60.107 60.000 0.00 0.00 34.51 3.97
7375 8798 0.915364 AGTTCATCTCAGGCCCTTCC 59.085 55.000 0.00 0.00 0.00 3.46
7447 8874 2.236395 ACATTACCTTTCCTCCAGACGG 59.764 50.000 0.00 0.00 0.00 4.79
7453 8880 8.803397 AACTAACATTACATTACCTTTCCTCC 57.197 34.615 0.00 0.00 0.00 4.30
7467 8894 9.821662 AAACTCGCAGAAAATAACTAACATTAC 57.178 29.630 0.00 0.00 34.09 1.89
7469 8896 8.784043 AGAAACTCGCAGAAAATAACTAACATT 58.216 29.630 0.00 0.00 34.09 2.71
7471 8898 7.307751 CCAGAAACTCGCAGAAAATAACTAACA 60.308 37.037 0.00 0.00 34.09 2.41
7472 8899 7.015877 CCAGAAACTCGCAGAAAATAACTAAC 58.984 38.462 0.00 0.00 34.09 2.34
7473 8900 6.708949 ACCAGAAACTCGCAGAAAATAACTAA 59.291 34.615 0.00 0.00 34.09 2.24
7517 8945 5.163550 GGGACCATTCTTTGTGCCTTATTAC 60.164 44.000 0.00 0.00 39.63 1.89
7518 8946 4.953579 GGGACCATTCTTTGTGCCTTATTA 59.046 41.667 0.00 0.00 39.63 0.98
7519 8947 3.769300 GGGACCATTCTTTGTGCCTTATT 59.231 43.478 0.00 0.00 39.63 1.40
7570 8998 3.378427 GGAGTAATGGTCAGAAACATGGC 59.622 47.826 0.00 0.00 0.00 4.40
7634 9062 2.838202 TCATGAGAAGGTAGGGTTCACC 59.162 50.000 0.00 0.00 40.67 4.02
7641 9069 4.184629 CGGAGTTTTCATGAGAAGGTAGG 58.815 47.826 0.00 0.00 34.71 3.18
7662 9090 8.920665 TGTTAAAATTGCTACAATTGATTTCCG 58.079 29.630 13.59 0.00 0.00 4.30
7722 9150 2.223803 ATCCTCCGTGAGAACTCAGT 57.776 50.000 4.67 0.00 40.75 3.41
7749 9177 2.429610 CCATCTTTGGCAAGAATCTGGG 59.570 50.000 0.00 0.00 42.53 4.45
7770 9198 3.719173 ACCGAGAATGCTTAGCTACTC 57.281 47.619 5.60 10.16 0.00 2.59
7771 9199 4.401519 TGTTACCGAGAATGCTTAGCTACT 59.598 41.667 5.60 1.97 0.00 2.57
7772 9200 4.679662 TGTTACCGAGAATGCTTAGCTAC 58.320 43.478 5.60 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.