Multiple sequence alignment - TraesCS2D01G350200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G350200 chr2D 100.000 3877 0 0 1 3877 448119966 448123842 0.000000e+00 7160
1 TraesCS2D01G350200 chr2D 93.557 357 19 4 2 357 354804148 354803795 2.650000e-146 529
2 TraesCS2D01G350200 chr2D 92.703 370 8 7 7 357 533883951 533884320 2.070000e-142 516
3 TraesCS2D01G350200 chr2D 91.281 367 15 10 7 357 645055664 645056029 5.820000e-133 484
4 TraesCS2D01G350200 chr2D 97.510 241 6 0 117 357 124470300 124470060 2.790000e-111 412
5 TraesCS2D01G350200 chr2B 92.911 2934 106 41 358 3227 527872597 527875492 0.000000e+00 4172
6 TraesCS2D01G350200 chr2B 87.028 609 35 19 3273 3877 527875503 527876071 0.000000e+00 647
7 TraesCS2D01G350200 chr2A 93.050 2259 80 34 358 2563 592690201 592692435 0.000000e+00 3230
8 TraesCS2D01G350200 chr2A 92.640 1318 58 18 2574 3877 592692727 592694019 0.000000e+00 1860
9 TraesCS2D01G350200 chr7A 90.950 895 49 13 1568 2462 10808980 10809842 0.000000e+00 1175
10 TraesCS2D01G350200 chr3B 88.095 462 34 10 1373 1834 275910389 275910829 2.650000e-146 529
11 TraesCS2D01G350200 chr4D 91.914 371 11 12 7 358 434278014 434278384 5.780000e-138 501
12 TraesCS2D01G350200 chr4D 97.510 241 6 0 117 357 75227870 75227630 2.790000e-111 412
13 TraesCS2D01G350200 chr4D 99.107 112 1 0 9 120 378490211 378490322 6.570000e-48 202
14 TraesCS2D01G350200 chr3D 92.120 368 10 9 9 357 431339920 431340287 5.780000e-138 501
15 TraesCS2D01G350200 chr4A 90.984 366 24 4 2004 2369 196611477 196611121 5.820000e-133 484
16 TraesCS2D01G350200 chr4A 94.406 143 8 0 1373 1515 196613216 196613074 1.810000e-53 220
17 TraesCS2D01G350200 chr7D 97.925 241 5 0 117 357 586745481 586745241 5.990000e-113 418
18 TraesCS2D01G350200 chr7D 99.123 114 1 0 7 120 28783278 28783391 5.080000e-49 206
19 TraesCS2D01G350200 chr6D 97.510 241 6 0 117 357 30010068 30010308 2.790000e-111 412
20 TraesCS2D01G350200 chr6D 99.115 113 1 0 8 120 461429125 461429013 1.830000e-48 204
21 TraesCS2D01G350200 chr5D 97.510 241 6 0 117 357 255469655 255469895 2.790000e-111 412
22 TraesCS2D01G350200 chr5D 99.123 114 1 0 7 120 522063600 522063487 5.080000e-49 206
23 TraesCS2D01G350200 chr5D 96.667 120 4 0 1 120 495022207 495022088 2.360000e-47 200
24 TraesCS2D01G350200 chr1D 100.000 112 0 0 9 120 94047559 94047670 1.410000e-49 207
25 TraesCS2D01G350200 chr1D 95.935 123 5 0 9 131 419072798 419072676 2.360000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G350200 chr2D 448119966 448123842 3876 False 7160.0 7160 100.0000 1 3877 1 chr2D.!!$F1 3876
1 TraesCS2D01G350200 chr2B 527872597 527876071 3474 False 2409.5 4172 89.9695 358 3877 2 chr2B.!!$F1 3519
2 TraesCS2D01G350200 chr2A 592690201 592694019 3818 False 2545.0 3230 92.8450 358 3877 2 chr2A.!!$F1 3519
3 TraesCS2D01G350200 chr7A 10808980 10809842 862 False 1175.0 1175 90.9500 1568 2462 1 chr7A.!!$F1 894
4 TraesCS2D01G350200 chr4A 196611121 196613216 2095 True 352.0 484 92.6950 1373 2369 2 chr4A.!!$R1 996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 495 0.031178 ACCGTGTACCAACGACAGTC 59.969 55.0 7.27 0.0 46.49 3.51 F
1320 1384 0.395312 CCAGTACAAGAACACGGGGT 59.605 55.0 0.00 0.0 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 3480 1.379044 CCACTGCCCCCATGTTCTC 60.379 63.158 0.0 0.0 0.00 2.87 R
3271 4850 0.248377 GCGTGAAGATGAAGGCATGC 60.248 55.000 9.9 9.9 34.11 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.766970 TGGTTGCCGGCAAATTTG 57.233 50.000 41.60 14.03 37.70 2.32
18 19 2.127839 TGGTTGCCGGCAAATTTGA 58.872 47.368 41.60 18.64 37.70 2.69
19 20 0.249657 TGGTTGCCGGCAAATTTGAC 60.250 50.000 41.60 28.54 37.70 3.18
20 21 0.249657 GGTTGCCGGCAAATTTGACA 60.250 50.000 41.60 16.94 35.35 3.58
21 22 1.576356 GTTGCCGGCAAATTTGACAA 58.424 45.000 41.60 16.10 35.35 3.18
22 23 1.936547 GTTGCCGGCAAATTTGACAAA 59.063 42.857 41.60 15.25 35.35 2.83
23 24 2.540265 TGCCGGCAAATTTGACAAAT 57.460 40.000 30.74 7.62 35.35 2.32
24 25 2.843701 TGCCGGCAAATTTGACAAATT 58.156 38.095 30.74 18.41 42.62 1.82
37 38 6.539649 TTTGACAAATTTGACCTAGAGACG 57.460 37.500 24.64 0.00 0.00 4.18
38 39 5.462530 TGACAAATTTGACCTAGAGACGA 57.537 39.130 24.64 0.00 0.00 4.20
39 40 5.849510 TGACAAATTTGACCTAGAGACGAA 58.150 37.500 24.64 0.00 0.00 3.85
40 41 6.285224 TGACAAATTTGACCTAGAGACGAAA 58.715 36.000 24.64 0.00 0.00 3.46
41 42 6.934645 TGACAAATTTGACCTAGAGACGAAAT 59.065 34.615 24.64 0.00 0.00 2.17
42 43 7.117812 TGACAAATTTGACCTAGAGACGAAATC 59.882 37.037 24.64 6.30 0.00 2.17
43 44 6.934645 ACAAATTTGACCTAGAGACGAAATCA 59.065 34.615 24.64 0.00 0.00 2.57
44 45 7.444183 ACAAATTTGACCTAGAGACGAAATCAA 59.556 33.333 24.64 0.00 0.00 2.57
45 46 7.979444 AATTTGACCTAGAGACGAAATCAAA 57.021 32.000 0.00 0.00 38.52 2.69
46 47 8.567285 AATTTGACCTAGAGACGAAATCAAAT 57.433 30.769 0.00 0.00 43.55 2.32
47 48 7.596749 TTTGACCTAGAGACGAAATCAAATC 57.403 36.000 0.00 0.00 31.51 2.17
48 49 6.280855 TGACCTAGAGACGAAATCAAATCA 57.719 37.500 0.00 0.00 0.00 2.57
49 50 6.100004 TGACCTAGAGACGAAATCAAATCAC 58.900 40.000 0.00 0.00 0.00 3.06
50 51 6.037786 ACCTAGAGACGAAATCAAATCACA 57.962 37.500 0.00 0.00 0.00 3.58
51 52 6.102663 ACCTAGAGACGAAATCAAATCACAG 58.897 40.000 0.00 0.00 0.00 3.66
52 53 6.071334 ACCTAGAGACGAAATCAAATCACAGA 60.071 38.462 0.00 0.00 0.00 3.41
53 54 6.813649 CCTAGAGACGAAATCAAATCACAGAA 59.186 38.462 0.00 0.00 0.00 3.02
54 55 7.493971 CCTAGAGACGAAATCAAATCACAGAAT 59.506 37.037 0.00 0.00 0.00 2.40
55 56 7.069852 AGAGACGAAATCAAATCACAGAATG 57.930 36.000 0.00 0.00 46.00 2.67
56 57 6.875726 AGAGACGAAATCAAATCACAGAATGA 59.124 34.615 0.00 0.00 43.13 2.57
57 58 7.388776 AGAGACGAAATCAAATCACAGAATGAA 59.611 33.333 0.00 0.00 41.93 2.57
58 59 7.301054 AGACGAAATCAAATCACAGAATGAAC 58.699 34.615 0.00 0.00 41.93 3.18
59 60 7.173907 AGACGAAATCAAATCACAGAATGAACT 59.826 33.333 0.00 0.00 41.93 3.01
60 61 7.080099 ACGAAATCAAATCACAGAATGAACTG 58.920 34.615 0.00 0.00 41.93 3.16
68 69 3.469008 ACAGAATGAACTGTCCGTGAA 57.531 42.857 0.00 0.00 46.36 3.18
69 70 3.804036 ACAGAATGAACTGTCCGTGAAA 58.196 40.909 0.00 0.00 46.36 2.69
70 71 3.560068 ACAGAATGAACTGTCCGTGAAAC 59.440 43.478 0.00 0.00 46.36 2.78
71 72 3.809832 CAGAATGAACTGTCCGTGAAACT 59.190 43.478 0.00 0.00 39.69 2.66
72 73 4.988540 CAGAATGAACTGTCCGTGAAACTA 59.011 41.667 0.00 0.00 39.69 2.24
73 74 5.639506 CAGAATGAACTGTCCGTGAAACTAT 59.360 40.000 0.00 0.00 39.69 2.12
74 75 6.147821 CAGAATGAACTGTCCGTGAAACTATT 59.852 38.462 0.00 0.00 39.69 1.73
75 76 6.710744 AGAATGAACTGTCCGTGAAACTATTT 59.289 34.615 0.00 0.00 31.75 1.40
76 77 5.917541 TGAACTGTCCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
77 78 5.361427 TGAACTGTCCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
84 85 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
85 86 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
86 87 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
87 88 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
88 89 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
89 90 1.429148 CTATTTCACGCGGCTGACCC 61.429 60.000 12.47 0.00 0.00 4.46
100 101 4.514577 CTGACCCGTGGCGCCTAG 62.515 72.222 29.70 20.71 0.00 3.02
113 114 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
114 115 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
115 116 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
116 117 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
117 118 4.756458 GCTCTCAGGCGCTGCACT 62.756 66.667 7.64 0.00 0.00 4.40
118 119 2.888111 CTCTCAGGCGCTGCACTA 59.112 61.111 7.64 0.00 0.00 2.74
119 120 1.226916 CTCTCAGGCGCTGCACTAG 60.227 63.158 7.64 0.00 0.00 2.57
120 121 2.202851 CTCAGGCGCTGCACTAGG 60.203 66.667 7.64 0.00 0.00 3.02
121 122 4.457496 TCAGGCGCTGCACTAGGC 62.457 66.667 7.64 0.00 45.13 3.93
133 134 3.851976 GCACTAGGCGCTACACTATAT 57.148 47.619 7.64 0.00 0.00 0.86
134 135 4.959596 GCACTAGGCGCTACACTATATA 57.040 45.455 7.64 0.00 0.00 0.86
135 136 4.911053 GCACTAGGCGCTACACTATATAG 58.089 47.826 7.64 8.27 0.00 1.31
136 137 4.395542 GCACTAGGCGCTACACTATATAGT 59.604 45.833 9.71 9.71 36.90 2.12
147 148 4.098055 CACTATATAGTGTGGCGCCTAG 57.902 50.000 29.70 19.62 46.51 3.02
148 149 2.492484 ACTATATAGTGTGGCGCCTAGC 59.508 50.000 29.70 17.93 39.21 3.42
149 150 3.814676 ACTATATAGTGTGGCGCCTAGCT 60.815 47.826 29.70 22.74 39.62 3.32
150 151 5.640544 ACTATATAGTGTGGCGCCTAGCTC 61.641 50.000 29.70 17.44 39.62 4.09
151 152 7.790584 ACTATATAGTGTGGCGCCTAGCTCT 62.791 48.000 29.70 22.85 39.62 4.09
160 161 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
161 162 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
162 163 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
163 164 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
165 166 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
166 167 3.586461 CTCTCAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
167 168 3.420606 CTCAGGCGCTGCACACTG 61.421 66.667 7.64 4.89 0.00 3.66
168 169 3.871248 CTCAGGCGCTGCACACTGA 62.871 63.158 7.64 9.54 37.61 3.41
169 170 3.720193 CAGGCGCTGCACACTGAC 61.720 66.667 7.64 0.00 32.86 3.51
170 171 3.933722 AGGCGCTGCACACTGACT 61.934 61.111 7.64 0.00 0.00 3.41
171 172 2.974698 GGCGCTGCACACTGACTT 60.975 61.111 7.64 0.00 0.00 3.01
172 173 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
173 174 1.630244 GGCGCTGCACACTGACTTAG 61.630 60.000 7.64 0.00 0.00 2.18
174 175 0.946221 GCGCTGCACACTGACTTAGT 60.946 55.000 0.00 0.00 41.36 2.24
175 176 1.668919 GCGCTGCACACTGACTTAGTA 60.669 52.381 0.00 0.00 37.60 1.82
176 177 2.672714 CGCTGCACACTGACTTAGTAA 58.327 47.619 0.00 0.00 37.60 2.24
177 178 3.254060 CGCTGCACACTGACTTAGTAAT 58.746 45.455 0.00 0.00 37.60 1.89
178 179 3.679980 CGCTGCACACTGACTTAGTAATT 59.320 43.478 0.00 0.00 37.60 1.40
179 180 4.152402 CGCTGCACACTGACTTAGTAATTT 59.848 41.667 0.00 0.00 37.60 1.82
180 181 5.334105 CGCTGCACACTGACTTAGTAATTTT 60.334 40.000 0.00 0.00 37.60 1.82
181 182 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
182 183 6.073003 GCTGCACACTGACTTAGTAATTTTCT 60.073 38.462 0.00 0.00 37.60 2.52
183 184 7.189693 TGCACACTGACTTAGTAATTTTCTG 57.810 36.000 0.00 0.00 37.60 3.02
184 185 6.989759 TGCACACTGACTTAGTAATTTTCTGA 59.010 34.615 0.00 0.00 37.60 3.27
185 186 7.661437 TGCACACTGACTTAGTAATTTTCTGAT 59.339 33.333 0.00 0.00 37.60 2.90
186 187 8.171840 GCACACTGACTTAGTAATTTTCTGATC 58.828 37.037 0.00 0.00 37.60 2.92
187 188 9.208022 CACACTGACTTAGTAATTTTCTGATCA 57.792 33.333 0.00 0.00 37.60 2.92
188 189 9.209175 ACACTGACTTAGTAATTTTCTGATCAC 57.791 33.333 0.00 0.00 37.60 3.06
189 190 9.208022 CACTGACTTAGTAATTTTCTGATCACA 57.792 33.333 0.00 0.00 37.60 3.58
190 191 9.209175 ACTGACTTAGTAATTTTCTGATCACAC 57.791 33.333 0.00 0.00 38.04 3.82
191 192 8.239681 TGACTTAGTAATTTTCTGATCACACG 57.760 34.615 0.00 0.00 0.00 4.49
192 193 7.330946 TGACTTAGTAATTTTCTGATCACACGG 59.669 37.037 0.00 0.00 0.00 4.94
193 194 6.594159 ACTTAGTAATTTTCTGATCACACGGG 59.406 38.462 0.00 0.00 0.00 5.28
194 195 4.906618 AGTAATTTTCTGATCACACGGGT 58.093 39.130 0.00 0.00 0.00 5.28
195 196 4.695455 AGTAATTTTCTGATCACACGGGTG 59.305 41.667 12.84 12.84 46.66 4.61
196 197 1.234821 TTTTCTGATCACACGGGTGC 58.765 50.000 14.50 0.00 44.87 5.01
197 198 0.948623 TTTCTGATCACACGGGTGCG 60.949 55.000 14.50 1.20 44.87 5.34
198 199 1.811645 TTCTGATCACACGGGTGCGA 61.812 55.000 14.50 3.83 44.87 5.10
199 200 2.048597 TGATCACACGGGTGCGAC 60.049 61.111 14.50 7.33 44.87 5.19
200 201 3.179265 GATCACACGGGTGCGACG 61.179 66.667 14.50 0.00 44.87 5.12
217 218 4.436998 GCTGACCGTGTAGCGCCT 62.437 66.667 2.29 0.00 39.71 5.52
218 219 3.060020 GCTGACCGTGTAGCGCCTA 62.060 63.158 2.29 0.00 39.71 3.93
219 220 1.734137 CTGACCGTGTAGCGCCTAT 59.266 57.895 2.29 0.00 39.71 2.57
220 221 0.317938 CTGACCGTGTAGCGCCTATC 60.318 60.000 2.29 0.00 39.71 2.08
221 222 0.750546 TGACCGTGTAGCGCCTATCT 60.751 55.000 2.29 0.00 39.71 1.98
222 223 0.317938 GACCGTGTAGCGCCTATCTG 60.318 60.000 2.29 0.00 39.71 2.90
223 224 1.035932 ACCGTGTAGCGCCTATCTGT 61.036 55.000 2.29 0.00 39.71 3.41
224 225 0.595053 CCGTGTAGCGCCTATCTGTG 60.595 60.000 2.29 0.00 39.71 3.66
225 226 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
226 227 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
227 228 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
233 234 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
234 235 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
235 236 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
236 237 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
238 239 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
239 240 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
240 241 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
241 242 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
242 243 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
243 244 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
244 245 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
245 246 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
247 248 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
248 249 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
249 250 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
250 251 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
251 252 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
252 253 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
253 254 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
254 255 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
255 256 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
256 257 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
257 258 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
258 259 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
259 260 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
267 268 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
268 269 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
269 270 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
270 271 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
271 272 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
272 273 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
273 274 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
274 275 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
275 276 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
276 277 0.316689 GTCGGGCGTCACACAAAAAG 60.317 55.000 0.00 0.00 0.00 2.27
277 278 0.462225 TCGGGCGTCACACAAAAAGA 60.462 50.000 0.00 0.00 0.00 2.52
278 279 0.591170 CGGGCGTCACACAAAAAGAT 59.409 50.000 0.00 0.00 0.00 2.40
279 280 1.399727 CGGGCGTCACACAAAAAGATC 60.400 52.381 0.00 0.00 0.00 2.75
280 281 1.606668 GGGCGTCACACAAAAAGATCA 59.393 47.619 0.00 0.00 0.00 2.92
281 282 2.350772 GGGCGTCACACAAAAAGATCAG 60.351 50.000 0.00 0.00 0.00 2.90
282 283 2.310577 GCGTCACACAAAAAGATCAGC 58.689 47.619 0.00 0.00 0.00 4.26
283 284 2.918131 GCGTCACACAAAAAGATCAGCC 60.918 50.000 0.00 0.00 0.00 4.85
284 285 2.662791 CGTCACACAAAAAGATCAGCCG 60.663 50.000 0.00 0.00 0.00 5.52
285 286 1.266718 TCACACAAAAAGATCAGCCGC 59.733 47.619 0.00 0.00 0.00 6.53
286 287 0.238289 ACACAAAAAGATCAGCCGCG 59.762 50.000 0.00 0.00 0.00 6.46
287 288 0.238289 CACAAAAAGATCAGCCGCGT 59.762 50.000 4.92 0.00 0.00 6.01
288 289 0.238289 ACAAAAAGATCAGCCGCGTG 59.762 50.000 4.92 0.00 0.00 5.34
289 290 0.516877 CAAAAAGATCAGCCGCGTGA 59.483 50.000 4.92 3.05 0.00 4.35
290 291 1.069296 CAAAAAGATCAGCCGCGTGAA 60.069 47.619 4.92 0.00 0.00 3.18
291 292 1.234821 AAAAGATCAGCCGCGTGAAA 58.765 45.000 4.92 0.00 0.00 2.69
292 293 1.453155 AAAGATCAGCCGCGTGAAAT 58.547 45.000 4.92 0.00 0.00 2.17
293 294 2.309528 AAGATCAGCCGCGTGAAATA 57.690 45.000 4.92 0.00 0.00 1.40
294 295 1.858091 AGATCAGCCGCGTGAAATAG 58.142 50.000 4.92 0.00 0.00 1.73
295 296 1.137086 AGATCAGCCGCGTGAAATAGT 59.863 47.619 4.92 0.00 0.00 2.12
296 297 1.933853 GATCAGCCGCGTGAAATAGTT 59.066 47.619 4.92 0.00 0.00 2.24
297 298 1.803334 TCAGCCGCGTGAAATAGTTT 58.197 45.000 4.92 0.00 0.00 2.66
298 299 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
299 300 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
316 317 9.886132 AATAGTTTCACGGATAGTTTATTCTGT 57.114 29.630 0.00 0.00 0.00 3.41
317 318 7.596749 AGTTTCACGGATAGTTTATTCTGTG 57.403 36.000 5.70 5.70 0.00 3.66
318 319 7.383687 AGTTTCACGGATAGTTTATTCTGTGA 58.616 34.615 9.82 9.82 30.74 3.58
319 320 8.041323 AGTTTCACGGATAGTTTATTCTGTGAT 58.959 33.333 13.59 0.00 31.90 3.06
320 321 8.665685 GTTTCACGGATAGTTTATTCTGTGATT 58.334 33.333 13.59 0.00 31.90 2.57
321 322 8.786826 TTCACGGATAGTTTATTCTGTGATTT 57.213 30.769 13.59 0.00 31.90 2.17
322 323 8.196802 TCACGGATAGTTTATTCTGTGATTTG 57.803 34.615 9.82 0.00 29.01 2.32
323 324 8.038351 TCACGGATAGTTTATTCTGTGATTTGA 58.962 33.333 9.82 0.00 29.01 2.69
324 325 8.830580 CACGGATAGTTTATTCTGTGATTTGAT 58.169 33.333 6.09 0.00 0.00 2.57
325 326 9.396022 ACGGATAGTTTATTCTGTGATTTGATT 57.604 29.630 0.00 0.00 0.00 2.57
331 332 9.003658 AGTTTATTCTGTGATTTGATTTCGTCT 57.996 29.630 0.00 0.00 0.00 4.18
336 337 8.648557 TTCTGTGATTTGATTTCGTCTATAGG 57.351 34.615 0.00 0.00 0.00 2.57
337 338 7.782049 TCTGTGATTTGATTTCGTCTATAGGT 58.218 34.615 0.00 0.00 0.00 3.08
338 339 8.258007 TCTGTGATTTGATTTCGTCTATAGGTT 58.742 33.333 0.00 0.00 0.00 3.50
339 340 9.529325 CTGTGATTTGATTTCGTCTATAGGTTA 57.471 33.333 0.00 0.00 0.00 2.85
340 341 9.878667 TGTGATTTGATTTCGTCTATAGGTTAA 57.121 29.630 0.00 0.00 0.00 2.01
367 368 0.179062 AAATTTGCCTTGGTTGCGCA 60.179 45.000 5.66 5.66 0.00 6.09
392 393 1.098050 AAGCAACGGCATTCTCATCC 58.902 50.000 0.00 0.00 44.61 3.51
403 404 3.270027 CATTCTCATCCGGTTAACTGCA 58.730 45.455 9.06 0.00 0.00 4.41
464 478 6.456718 CGACTTACTACTACTACTGCAGAACC 60.457 46.154 23.35 0.00 0.00 3.62
474 488 0.865769 CTGCAGAACCGTGTACCAAC 59.134 55.000 8.42 0.00 0.00 3.77
479 493 1.134226 GAACCGTGTACCAACGACAG 58.866 55.000 7.27 0.00 46.49 3.51
480 494 0.461135 AACCGTGTACCAACGACAGT 59.539 50.000 7.27 0.00 46.49 3.55
481 495 0.031178 ACCGTGTACCAACGACAGTC 59.969 55.000 7.27 0.00 46.49 3.51
482 496 0.665369 CCGTGTACCAACGACAGTCC 60.665 60.000 7.27 0.00 46.49 3.85
519 533 6.184789 TGGGCCAAGTAAAGACTTTATTAGG 58.815 40.000 2.13 12.60 43.70 2.69
557 571 4.692228 CTTTGGTGGTAAACAAACATGCT 58.308 39.130 0.00 0.00 33.45 3.79
558 572 4.314740 TTGGTGGTAAACAAACATGCTC 57.685 40.909 0.00 0.00 0.00 4.26
560 574 2.550606 GGTGGTAAACAAACATGCTCGA 59.449 45.455 0.00 0.00 0.00 4.04
561 575 3.190535 GGTGGTAAACAAACATGCTCGAT 59.809 43.478 0.00 0.00 0.00 3.59
600 627 2.243957 GCAAAACCCGCTGCAAACC 61.244 57.895 0.00 0.00 38.48 3.27
674 703 1.975660 GTGAACCTTAACCACCAGCA 58.024 50.000 0.00 0.00 0.00 4.41
769 812 5.221263 GGGAGGATATATGTACATACTGGCG 60.221 48.000 17.69 0.00 0.00 5.69
933 993 2.095718 GCCGAATCCAAGAAAGACACAC 60.096 50.000 0.00 0.00 0.00 3.82
1253 1317 5.075858 TGGATTTTCCAGCAATCATCAAC 57.924 39.130 0.00 0.00 42.67 3.18
1258 1322 2.621338 TCCAGCAATCATCAACTCGTC 58.379 47.619 0.00 0.00 0.00 4.20
1320 1384 0.395312 CCAGTACAAGAACACGGGGT 59.605 55.000 0.00 0.00 0.00 4.95
1736 1827 6.430000 ACATCCATTATTAATTCCACCGCTAC 59.570 38.462 0.00 0.00 0.00 3.58
1777 2156 3.675698 CGAGAGAGCAGTGGTAAGAAAAC 59.324 47.826 0.00 0.00 0.00 2.43
2229 3492 4.210331 CCTTAATCTTGAGAACATGGGGG 58.790 47.826 0.00 0.00 0.00 5.40
2230 3493 2.149973 AATCTTGAGAACATGGGGGC 57.850 50.000 0.00 0.00 0.00 5.80
2231 3494 1.002069 ATCTTGAGAACATGGGGGCA 58.998 50.000 0.00 0.00 0.00 5.36
2264 3527 5.877012 GTGGAAATTGCTGACTAATCTGAGA 59.123 40.000 0.00 0.00 0.00 3.27
2440 3706 2.455674 TGACTGTGAATCCGACTTGG 57.544 50.000 0.00 0.00 40.09 3.61
2592 4152 2.610727 CCGAGAGAGAGTTGAAACCACC 60.611 54.545 0.00 0.00 0.00 4.61
2635 4203 2.543653 GCTTGTGTTGGTTGATGGACAC 60.544 50.000 0.00 0.00 41.97 3.67
2636 4204 1.304254 TGTGTTGGTTGATGGACACG 58.696 50.000 0.00 0.00 43.93 4.49
2637 4205 0.040425 GTGTTGGTTGATGGACACGC 60.040 55.000 0.00 0.00 33.88 5.34
2638 4206 0.464554 TGTTGGTTGATGGACACGCA 60.465 50.000 0.00 0.00 0.00 5.24
2684 4252 1.594293 CAAGACGTCCAAGGTGCGT 60.594 57.895 13.01 10.13 41.81 5.24
2773 4341 4.776322 CGGCCTCACCATCGCCAA 62.776 66.667 0.00 0.00 43.17 4.52
2916 4487 4.609018 CCTACATGGAGGCGGCGG 62.609 72.222 12.18 0.00 38.35 6.13
2948 4520 5.625150 AGAGAATTAATTTGGAGCGGCTAT 58.375 37.500 0.60 0.00 0.00 2.97
3019 4591 3.191371 GGCGAATTTGAGGATTCTGTTGT 59.809 43.478 0.00 0.00 34.58 3.32
3020 4592 4.321230 GGCGAATTTGAGGATTCTGTTGTT 60.321 41.667 0.00 0.00 34.58 2.83
3023 4595 6.861055 GCGAATTTGAGGATTCTGTTGTTAAA 59.139 34.615 0.00 0.00 34.58 1.52
3024 4596 7.381139 GCGAATTTGAGGATTCTGTTGTTAAAA 59.619 33.333 0.00 0.00 34.58 1.52
3025 4597 9.243637 CGAATTTGAGGATTCTGTTGTTAAAAA 57.756 29.630 0.00 0.00 34.58 1.94
3061 4633 2.490903 CGGTATAGGATACGGAACAGGG 59.509 54.545 0.00 0.00 46.39 4.45
3209 4788 5.068723 TCCTCTTTTACCTGTACATCGATCC 59.931 44.000 0.00 0.00 0.00 3.36
3227 4806 7.838079 TCGATCCATTTTATTCCATTCCATT 57.162 32.000 0.00 0.00 0.00 3.16
3228 4807 7.885297 TCGATCCATTTTATTCCATTCCATTC 58.115 34.615 0.00 0.00 0.00 2.67
3229 4808 7.039784 TCGATCCATTTTATTCCATTCCATTCC 60.040 37.037 0.00 0.00 0.00 3.01
3230 4809 7.255906 CGATCCATTTTATTCCATTCCATTCCA 60.256 37.037 0.00 0.00 0.00 3.53
3231 4810 7.934354 TCCATTTTATTCCATTCCATTCCAT 57.066 32.000 0.00 0.00 0.00 3.41
3247 4826 3.843893 TCCATGATGGATTCACGACAT 57.156 42.857 10.75 0.00 42.67 3.06
3251 4830 3.183793 TGATGGATTCACGACATCAGG 57.816 47.619 0.00 0.00 44.19 3.86
3252 4831 2.765699 TGATGGATTCACGACATCAGGA 59.234 45.455 0.00 0.00 44.19 3.86
3254 4833 1.899142 TGGATTCACGACATCAGGACA 59.101 47.619 0.00 0.00 0.00 4.02
3268 4847 1.072505 GGACAGCCCTTTGGTCGAA 59.927 57.895 0.00 0.00 32.39 3.71
3271 4850 0.609131 ACAGCCCTTTGGTCGAATGG 60.609 55.000 0.00 0.00 0.00 3.16
3304 4883 1.600636 CACGCCTGAGCTTTTCCCA 60.601 57.895 0.00 0.00 36.60 4.37
3353 4933 0.681175 AAGGCTGCAAATGTTGGTCC 59.319 50.000 0.50 0.00 0.00 4.46
3389 4969 5.971763 TCTTGCTGAAAGAGATCTAAGTCC 58.028 41.667 0.00 0.00 40.09 3.85
3390 4970 5.481824 TCTTGCTGAAAGAGATCTAAGTCCA 59.518 40.000 0.00 0.00 40.09 4.02
3392 4972 7.343057 TCTTGCTGAAAGAGATCTAAGTCCATA 59.657 37.037 0.00 0.00 40.09 2.74
3393 4973 7.423844 TGCTGAAAGAGATCTAAGTCCATAA 57.576 36.000 0.00 0.00 34.07 1.90
3398 4978 6.739331 AAGAGATCTAAGTCCATAACAGGG 57.261 41.667 0.00 0.00 0.00 4.45
3406 4986 4.584638 AGTCCATAACAGGGCATTAACA 57.415 40.909 0.00 0.00 35.10 2.41
3410 4990 3.381272 CCATAACAGGGCATTAACACAGG 59.619 47.826 0.00 0.00 0.00 4.00
3416 4996 1.474077 GGGCATTAACACAGGAGCAAG 59.526 52.381 0.00 0.00 0.00 4.01
3430 5010 3.137176 AGGAGCAAGATTTAGGCTATGCA 59.863 43.478 16.80 0.00 38.15 3.96
3447 5027 6.531594 GGCTATGCATTCTAAGGAAACAAAAC 59.468 38.462 3.54 0.00 34.90 2.43
3470 5050 4.322057 AAAGGTGCACCCAGAATAGAAT 57.678 40.909 32.29 6.70 36.42 2.40
3471 5051 4.322057 AAGGTGCACCCAGAATAGAATT 57.678 40.909 32.29 12.90 36.42 2.17
3541 5121 1.742761 CCGACATGGTTCAGCTTCAT 58.257 50.000 0.00 0.00 0.00 2.57
3561 5141 4.821260 TCATCTATCAGTCTCTCACTCTGC 59.179 45.833 0.00 0.00 30.26 4.26
3562 5142 4.227864 TCTATCAGTCTCTCACTCTGCA 57.772 45.455 0.00 0.00 30.26 4.41
3563 5143 4.790937 TCTATCAGTCTCTCACTCTGCAT 58.209 43.478 0.00 0.00 30.26 3.96
3565 5145 6.360618 TCTATCAGTCTCTCACTCTGCATTA 58.639 40.000 0.00 0.00 30.26 1.90
3662 5242 2.999507 AGAAGTACTCACACTCTGCG 57.000 50.000 0.00 0.00 0.00 5.18
3700 5280 1.244019 AACTTGCGACTGAATGGGGC 61.244 55.000 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.249657 GTCAAATTTGCCGGCAACCA 60.250 50.000 40.36 27.87 35.46 3.67
1 2 0.249657 TGTCAAATTTGCCGGCAACC 60.250 50.000 40.36 22.51 35.46 3.77
2 3 1.576356 TTGTCAAATTTGCCGGCAAC 58.424 45.000 40.36 28.31 35.46 4.17
3 4 2.315925 TTTGTCAAATTTGCCGGCAA 57.684 40.000 37.30 37.30 0.00 4.52
4 5 2.540265 ATTTGTCAAATTTGCCGGCA 57.460 40.000 29.03 29.03 0.00 5.69
5 6 3.894782 AAATTTGTCAAATTTGCCGGC 57.105 38.095 27.61 22.73 46.30 6.13
12 13 7.444183 TCGTCTCTAGGTCAAATTTGTCAAATT 59.556 33.333 16.26 16.26 42.62 1.82
13 14 6.934645 TCGTCTCTAGGTCAAATTTGTCAAAT 59.065 34.615 17.47 4.91 0.00 2.32
14 15 6.285224 TCGTCTCTAGGTCAAATTTGTCAAA 58.715 36.000 17.47 0.00 0.00 2.69
15 16 5.849510 TCGTCTCTAGGTCAAATTTGTCAA 58.150 37.500 17.47 4.22 0.00 3.18
16 17 5.462530 TCGTCTCTAGGTCAAATTTGTCA 57.537 39.130 17.47 0.00 0.00 3.58
17 18 6.780706 TTTCGTCTCTAGGTCAAATTTGTC 57.219 37.500 17.47 12.07 0.00 3.18
18 19 6.934645 TGATTTCGTCTCTAGGTCAAATTTGT 59.065 34.615 17.47 1.67 0.00 2.83
19 20 7.364522 TGATTTCGTCTCTAGGTCAAATTTG 57.635 36.000 12.15 12.15 0.00 2.32
20 21 7.979444 TTGATTTCGTCTCTAGGTCAAATTT 57.021 32.000 0.00 0.00 0.00 1.82
21 22 7.979444 TTTGATTTCGTCTCTAGGTCAAATT 57.021 32.000 0.00 0.00 31.46 1.82
22 23 7.824289 TGATTTGATTTCGTCTCTAGGTCAAAT 59.176 33.333 9.41 9.41 43.48 2.32
23 24 7.117812 GTGATTTGATTTCGTCTCTAGGTCAAA 59.882 37.037 0.00 0.00 38.14 2.69
24 25 6.590292 GTGATTTGATTTCGTCTCTAGGTCAA 59.410 38.462 0.00 0.00 0.00 3.18
25 26 6.100004 GTGATTTGATTTCGTCTCTAGGTCA 58.900 40.000 0.00 0.00 0.00 4.02
26 27 6.100004 TGTGATTTGATTTCGTCTCTAGGTC 58.900 40.000 0.00 0.00 0.00 3.85
27 28 6.037786 TGTGATTTGATTTCGTCTCTAGGT 57.962 37.500 0.00 0.00 0.00 3.08
28 29 6.333416 TCTGTGATTTGATTTCGTCTCTAGG 58.667 40.000 0.00 0.00 0.00 3.02
29 30 7.818493 TTCTGTGATTTGATTTCGTCTCTAG 57.182 36.000 0.00 0.00 0.00 2.43
30 31 8.034804 TCATTCTGTGATTTGATTTCGTCTCTA 58.965 33.333 0.00 0.00 0.00 2.43
31 32 6.875726 TCATTCTGTGATTTGATTTCGTCTCT 59.124 34.615 0.00 0.00 0.00 3.10
32 33 7.065216 TCATTCTGTGATTTGATTTCGTCTC 57.935 36.000 0.00 0.00 0.00 3.36
33 34 7.173907 AGTTCATTCTGTGATTTGATTTCGTCT 59.826 33.333 0.00 0.00 36.54 4.18
34 35 7.269937 CAGTTCATTCTGTGATTTGATTTCGTC 59.730 37.037 0.00 0.00 36.54 4.20
35 36 7.080099 CAGTTCATTCTGTGATTTGATTTCGT 58.920 34.615 0.00 0.00 36.54 3.85
36 37 7.080099 ACAGTTCATTCTGTGATTTGATTTCG 58.920 34.615 0.00 0.00 45.40 3.46
37 38 7.540055 GGACAGTTCATTCTGTGATTTGATTTC 59.460 37.037 4.06 0.00 46.81 2.17
38 39 7.373493 GGACAGTTCATTCTGTGATTTGATTT 58.627 34.615 4.06 0.00 46.81 2.17
39 40 6.348786 CGGACAGTTCATTCTGTGATTTGATT 60.349 38.462 4.06 0.00 46.81 2.57
40 41 5.122869 CGGACAGTTCATTCTGTGATTTGAT 59.877 40.000 4.06 0.00 46.81 2.57
41 42 4.452114 CGGACAGTTCATTCTGTGATTTGA 59.548 41.667 4.06 0.00 46.81 2.69
42 43 4.214119 ACGGACAGTTCATTCTGTGATTTG 59.786 41.667 4.06 0.00 46.81 2.32
43 44 4.389374 ACGGACAGTTCATTCTGTGATTT 58.611 39.130 4.06 0.00 46.81 2.17
44 45 4.008074 ACGGACAGTTCATTCTGTGATT 57.992 40.909 4.06 0.00 46.81 2.57
45 46 3.685139 ACGGACAGTTCATTCTGTGAT 57.315 42.857 4.06 0.00 46.81 3.06
47 48 2.754472 TCACGGACAGTTCATTCTGTG 58.246 47.619 4.06 4.48 46.81 3.66
49 50 3.809832 AGTTTCACGGACAGTTCATTCTG 59.190 43.478 0.00 0.00 40.80 3.02
50 51 4.073293 AGTTTCACGGACAGTTCATTCT 57.927 40.909 0.00 0.00 0.00 2.40
51 52 6.481954 AATAGTTTCACGGACAGTTCATTC 57.518 37.500 0.00 0.00 0.00 2.67
52 53 6.485313 TGAAATAGTTTCACGGACAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
53 54 5.995282 TGAAATAGTTTCACGGACAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
54 55 5.361427 TGAAATAGTTTCACGGACAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
55 56 5.917541 TGAAATAGTTTCACGGACAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
65 66 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
66 67 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
67 68 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
68 69 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
69 70 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
70 71 1.429148 GGGTCAGCCGCGTGAAATAG 61.429 60.000 4.92 0.00 34.97 1.73
71 72 1.448893 GGGTCAGCCGCGTGAAATA 60.449 57.895 4.92 0.00 34.97 1.40
72 73 2.746277 GGGTCAGCCGCGTGAAAT 60.746 61.111 4.92 0.00 34.97 2.17
83 84 4.514577 CTAGGCGCCACGGGTCAG 62.515 72.222 31.54 9.46 0.00 3.51
88 89 4.577246 GAGAGCTAGGCGCCACGG 62.577 72.222 31.54 18.60 40.39 4.94
89 90 3.764810 CTGAGAGCTAGGCGCCACG 62.765 68.421 31.54 19.97 40.39 4.94
90 91 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
91 92 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
100 101 3.362399 TAGTGCAGCGCCTGAGAGC 62.362 63.158 2.29 0.00 39.42 4.09
101 102 1.226916 CTAGTGCAGCGCCTGAGAG 60.227 63.158 2.29 0.00 32.44 3.20
102 103 2.714991 CCTAGTGCAGCGCCTGAGA 61.715 63.158 2.29 0.00 32.44 3.27
103 104 2.202851 CCTAGTGCAGCGCCTGAG 60.203 66.667 2.29 0.00 32.44 3.35
104 105 4.457496 GCCTAGTGCAGCGCCTGA 62.457 66.667 2.29 0.00 40.77 3.86
110 111 2.167861 GTGTAGCGCCTAGTGCAGC 61.168 63.158 2.29 8.69 42.00 5.25
111 112 0.738975 TAGTGTAGCGCCTAGTGCAG 59.261 55.000 2.29 0.50 42.00 4.41
112 113 1.399714 ATAGTGTAGCGCCTAGTGCA 58.600 50.000 2.29 0.00 42.00 4.57
113 114 3.851976 ATATAGTGTAGCGCCTAGTGC 57.148 47.619 2.29 0.00 39.59 4.40
114 115 5.870444 CACTATATAGTGTAGCGCCTAGTG 58.130 45.833 27.86 6.84 46.51 2.74
127 128 2.492484 GCTAGGCGCCACACTATATAGT 59.508 50.000 31.54 9.71 36.90 2.12
128 129 2.755655 AGCTAGGCGCCACACTATATAG 59.244 50.000 31.54 19.15 40.39 1.31
129 130 2.753452 GAGCTAGGCGCCACACTATATA 59.247 50.000 31.54 8.52 40.39 0.86
130 131 1.546476 GAGCTAGGCGCCACACTATAT 59.454 52.381 31.54 7.63 40.39 0.86
131 132 0.959553 GAGCTAGGCGCCACACTATA 59.040 55.000 31.54 10.17 40.39 1.31
132 133 0.757188 AGAGCTAGGCGCCACACTAT 60.757 55.000 31.54 16.52 40.39 2.12
133 134 1.379977 AGAGCTAGGCGCCACACTA 60.380 57.895 31.54 11.42 40.39 2.74
134 135 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
135 136 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
136 137 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
137 138 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
138 139 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
148 149 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
149 150 3.619767 AGTGTGCAGCGCCTGAGA 61.620 61.111 2.29 0.00 32.44 3.27
150 151 3.420606 CAGTGTGCAGCGCCTGAG 61.421 66.667 15.59 0.00 32.44 3.35
151 152 3.927548 TCAGTGTGCAGCGCCTGA 61.928 61.111 18.04 18.04 32.44 3.86
152 153 3.720193 GTCAGTGTGCAGCGCCTG 61.720 66.667 2.29 14.85 34.12 4.85
153 154 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
154 155 1.630244 CTAAGTCAGTGTGCAGCGCC 61.630 60.000 2.29 0.00 0.00 6.53
155 156 0.946221 ACTAAGTCAGTGTGCAGCGC 60.946 55.000 0.00 0.00 35.62 5.92
156 157 2.347697 TACTAAGTCAGTGTGCAGCG 57.652 50.000 0.00 0.00 38.24 5.18
157 158 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
158 159 7.171508 TCAGAAAATTACTAAGTCAGTGTGCAG 59.828 37.037 0.00 0.00 38.24 4.41
159 160 6.989759 TCAGAAAATTACTAAGTCAGTGTGCA 59.010 34.615 0.00 0.00 38.24 4.57
160 161 7.421530 TCAGAAAATTACTAAGTCAGTGTGC 57.578 36.000 0.00 0.00 38.24 4.57
161 162 9.208022 TGATCAGAAAATTACTAAGTCAGTGTG 57.792 33.333 0.00 0.00 38.24 3.82
162 163 9.209175 GTGATCAGAAAATTACTAAGTCAGTGT 57.791 33.333 0.00 0.00 38.24 3.55
163 164 9.208022 TGTGATCAGAAAATTACTAAGTCAGTG 57.792 33.333 0.00 0.00 38.24 3.66
164 165 9.209175 GTGTGATCAGAAAATTACTAAGTCAGT 57.791 33.333 0.00 0.00 41.62 3.41
165 166 8.376203 CGTGTGATCAGAAAATTACTAAGTCAG 58.624 37.037 0.00 0.00 0.00 3.51
166 167 7.330946 CCGTGTGATCAGAAAATTACTAAGTCA 59.669 37.037 0.00 0.00 0.00 3.41
167 168 7.201530 CCCGTGTGATCAGAAAATTACTAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
168 169 6.594159 CCCGTGTGATCAGAAAATTACTAAGT 59.406 38.462 0.00 0.00 0.00 2.24
169 170 6.594159 ACCCGTGTGATCAGAAAATTACTAAG 59.406 38.462 0.00 0.00 0.00 2.18
170 171 6.370442 CACCCGTGTGATCAGAAAATTACTAA 59.630 38.462 0.00 0.00 45.76 2.24
171 172 5.872617 CACCCGTGTGATCAGAAAATTACTA 59.127 40.000 0.00 0.00 45.76 1.82
172 173 4.695455 CACCCGTGTGATCAGAAAATTACT 59.305 41.667 0.00 0.00 45.76 2.24
173 174 4.671766 GCACCCGTGTGATCAGAAAATTAC 60.672 45.833 0.90 0.00 45.76 1.89
174 175 3.438781 GCACCCGTGTGATCAGAAAATTA 59.561 43.478 0.90 0.00 45.76 1.40
175 176 2.228822 GCACCCGTGTGATCAGAAAATT 59.771 45.455 0.90 0.00 45.76 1.82
176 177 1.812571 GCACCCGTGTGATCAGAAAAT 59.187 47.619 0.90 0.00 45.76 1.82
177 178 1.234821 GCACCCGTGTGATCAGAAAA 58.765 50.000 0.90 0.00 45.76 2.29
178 179 0.948623 CGCACCCGTGTGATCAGAAA 60.949 55.000 0.90 0.00 45.76 2.52
179 180 1.374125 CGCACCCGTGTGATCAGAA 60.374 57.895 0.90 0.00 45.76 3.02
180 181 2.261361 CGCACCCGTGTGATCAGA 59.739 61.111 0.90 0.00 45.76 3.27
181 182 2.261361 TCGCACCCGTGTGATCAG 59.739 61.111 0.90 0.00 45.76 2.90
193 194 3.884581 TACACGGTCAGCGTCGCAC 62.885 63.158 21.09 9.66 0.00 5.34
194 195 3.604494 CTACACGGTCAGCGTCGCA 62.604 63.158 21.09 0.00 0.00 5.10
195 196 2.874780 CTACACGGTCAGCGTCGC 60.875 66.667 9.80 9.80 0.00 5.19
196 197 2.874780 GCTACACGGTCAGCGTCG 60.875 66.667 0.00 0.00 0.00 5.12
200 201 2.351336 ATAGGCGCTACACGGTCAGC 62.351 60.000 7.64 1.95 43.93 4.26
201 202 0.317938 GATAGGCGCTACACGGTCAG 60.318 60.000 7.64 0.00 43.93 3.51
202 203 0.750546 AGATAGGCGCTACACGGTCA 60.751 55.000 7.64 0.00 43.93 4.02
203 204 0.317938 CAGATAGGCGCTACACGGTC 60.318 60.000 7.64 0.00 43.93 4.79
204 205 1.035932 ACAGATAGGCGCTACACGGT 61.036 55.000 7.64 1.25 43.93 4.83
205 206 0.595053 CACAGATAGGCGCTACACGG 60.595 60.000 7.64 0.58 43.93 4.94
207 208 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
208 209 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
209 210 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
215 216 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
216 217 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
217 218 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
218 219 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
219 220 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
221 222 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
222 223 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
223 224 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
224 225 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
225 226 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
226 227 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
227 228 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
228 229 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
229 230 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
230 231 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
231 232 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
232 233 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
233 234 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
234 235 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
235 236 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
236 237 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
237 238 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
238 239 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
239 240 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
240 241 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
241 242 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
242 243 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
250 251 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
251 252 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
252 253 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
253 254 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
254 255 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
255 256 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
256 257 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
257 258 0.316689 CTTTTTGTGTGACGCCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
258 259 0.462225 TCTTTTTGTGTGACGCCCGA 60.462 50.000 0.00 0.00 0.00 5.14
259 260 0.591170 ATCTTTTTGTGTGACGCCCG 59.409 50.000 0.00 0.00 0.00 6.13
260 261 1.606668 TGATCTTTTTGTGTGACGCCC 59.393 47.619 0.00 0.00 0.00 6.13
261 262 2.918131 GCTGATCTTTTTGTGTGACGCC 60.918 50.000 0.00 0.00 0.00 5.68
262 263 2.310577 GCTGATCTTTTTGTGTGACGC 58.689 47.619 0.00 0.00 0.00 5.19
263 264 2.662791 CGGCTGATCTTTTTGTGTGACG 60.663 50.000 0.00 0.00 0.00 4.35
264 265 2.918131 GCGGCTGATCTTTTTGTGTGAC 60.918 50.000 0.00 0.00 0.00 3.67
265 266 1.266718 GCGGCTGATCTTTTTGTGTGA 59.733 47.619 0.00 0.00 0.00 3.58
266 267 1.689959 GCGGCTGATCTTTTTGTGTG 58.310 50.000 0.00 0.00 0.00 3.82
267 268 0.238289 CGCGGCTGATCTTTTTGTGT 59.762 50.000 0.00 0.00 0.00 3.72
268 269 0.238289 ACGCGGCTGATCTTTTTGTG 59.762 50.000 12.47 0.00 0.00 3.33
269 270 0.238289 CACGCGGCTGATCTTTTTGT 59.762 50.000 12.47 0.00 0.00 2.83
270 271 0.516877 TCACGCGGCTGATCTTTTTG 59.483 50.000 12.47 0.00 0.00 2.44
271 272 1.234821 TTCACGCGGCTGATCTTTTT 58.765 45.000 12.47 0.00 0.00 1.94
272 273 1.234821 TTTCACGCGGCTGATCTTTT 58.765 45.000 12.47 0.00 0.00 2.27
273 274 1.453155 ATTTCACGCGGCTGATCTTT 58.547 45.000 12.47 0.00 0.00 2.52
274 275 2.205074 CTATTTCACGCGGCTGATCTT 58.795 47.619 12.47 0.00 0.00 2.40
275 276 1.137086 ACTATTTCACGCGGCTGATCT 59.863 47.619 12.47 0.00 0.00 2.75
276 277 1.571919 ACTATTTCACGCGGCTGATC 58.428 50.000 12.47 0.00 0.00 2.92
277 278 2.024176 AACTATTTCACGCGGCTGAT 57.976 45.000 12.47 1.51 0.00 2.90
278 279 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
279 280 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
280 281 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
290 291 9.886132 ACAGAATAAACTATCCGTGAAACTATT 57.114 29.630 0.00 0.00 31.75 1.73
291 292 9.314321 CACAGAATAAACTATCCGTGAAACTAT 57.686 33.333 0.00 0.00 31.75 2.12
292 293 8.525316 TCACAGAATAAACTATCCGTGAAACTA 58.475 33.333 0.00 0.00 31.75 2.24
293 294 7.383687 TCACAGAATAAACTATCCGTGAAACT 58.616 34.615 0.00 0.00 31.75 2.66
294 295 7.591006 TCACAGAATAAACTATCCGTGAAAC 57.409 36.000 0.00 0.00 0.00 2.78
295 296 8.786826 AATCACAGAATAAACTATCCGTGAAA 57.213 30.769 0.00 0.00 35.92 2.69
296 297 8.664798 CAAATCACAGAATAAACTATCCGTGAA 58.335 33.333 0.00 0.00 35.92 3.18
297 298 8.038351 TCAAATCACAGAATAAACTATCCGTGA 58.962 33.333 0.00 0.00 36.65 4.35
298 299 8.196802 TCAAATCACAGAATAAACTATCCGTG 57.803 34.615 0.00 0.00 0.00 4.94
299 300 8.964476 ATCAAATCACAGAATAAACTATCCGT 57.036 30.769 0.00 0.00 0.00 4.69
305 306 9.003658 AGACGAAATCAAATCACAGAATAAACT 57.996 29.630 0.00 0.00 0.00 2.66
310 311 9.265901 CCTATAGACGAAATCAAATCACAGAAT 57.734 33.333 0.00 0.00 0.00 2.40
311 312 8.258007 ACCTATAGACGAAATCAAATCACAGAA 58.742 33.333 0.00 0.00 0.00 3.02
312 313 7.782049 ACCTATAGACGAAATCAAATCACAGA 58.218 34.615 0.00 0.00 0.00 3.41
313 314 8.425577 AACCTATAGACGAAATCAAATCACAG 57.574 34.615 0.00 0.00 0.00 3.66
314 315 9.878667 TTAACCTATAGACGAAATCAAATCACA 57.121 29.630 0.00 0.00 0.00 3.58
332 333 9.791801 AAGGCAAATTTGACAAATTTAACCTAT 57.208 25.926 33.87 26.54 46.34 2.57
333 334 9.050601 CAAGGCAAATTTGACAAATTTAACCTA 57.949 29.630 33.87 6.69 46.34 3.08
334 335 7.013178 CCAAGGCAAATTTGACAAATTTAACCT 59.987 33.333 31.38 31.38 46.34 3.50
335 336 7.138081 CCAAGGCAAATTTGACAAATTTAACC 58.862 34.615 29.34 29.35 46.34 2.85
336 337 7.702386 ACCAAGGCAAATTTGACAAATTTAAC 58.298 30.769 29.34 24.58 46.34 2.01
337 338 7.872113 ACCAAGGCAAATTTGACAAATTTAA 57.128 28.000 29.34 0.00 46.34 1.52
338 339 7.680588 GCAACCAAGGCAAATTTGACAAATTTA 60.681 33.333 29.34 0.00 46.34 1.40
340 341 5.450274 GCAACCAAGGCAAATTTGACAAATT 60.450 36.000 25.59 18.41 42.62 1.82
341 342 4.036616 GCAACCAAGGCAAATTTGACAAAT 59.963 37.500 25.59 7.62 39.18 2.32
342 343 3.376546 GCAACCAAGGCAAATTTGACAAA 59.623 39.130 25.59 2.48 39.18 2.83
343 344 2.941720 GCAACCAAGGCAAATTTGACAA 59.058 40.909 25.59 0.00 39.18 3.18
344 345 2.559440 GCAACCAAGGCAAATTTGACA 58.441 42.857 25.59 0.00 39.18 3.58
345 346 1.526464 CGCAACCAAGGCAAATTTGAC 59.474 47.619 22.31 19.61 36.08 3.18
346 347 1.863267 CGCAACCAAGGCAAATTTGA 58.137 45.000 22.31 0.00 0.00 2.69
347 348 0.235404 GCGCAACCAAGGCAAATTTG 59.765 50.000 14.03 14.03 0.00 2.32
348 349 0.179062 TGCGCAACCAAGGCAAATTT 60.179 45.000 8.16 0.00 33.01 1.82
349 350 0.600782 CTGCGCAACCAAGGCAAATT 60.601 50.000 13.05 0.00 36.06 1.82
350 351 1.005867 CTGCGCAACCAAGGCAAAT 60.006 52.632 13.05 0.00 36.06 2.32
351 352 2.348605 GACTGCGCAACCAAGGCAAA 62.349 55.000 13.05 0.00 36.06 3.68
352 353 2.832661 ACTGCGCAACCAAGGCAA 60.833 55.556 13.05 0.00 36.06 4.52
353 354 3.286751 GACTGCGCAACCAAGGCA 61.287 61.111 13.05 0.00 35.07 4.75
354 355 3.286751 TGACTGCGCAACCAAGGC 61.287 61.111 13.05 0.92 0.00 4.35
355 356 1.723608 TTGTGACTGCGCAACCAAGG 61.724 55.000 13.05 0.00 39.43 3.61
356 357 0.317269 CTTGTGACTGCGCAACCAAG 60.317 55.000 13.05 16.19 39.43 3.61
367 368 0.593128 GAATGCCGTTGCTTGTGACT 59.407 50.000 0.00 0.00 38.71 3.41
392 393 1.206578 CCACGCTTGCAGTTAACCG 59.793 57.895 0.88 0.00 0.00 4.44
403 404 1.595357 GGCACCTACTACCACGCTT 59.405 57.895 0.00 0.00 0.00 4.68
464 478 1.000233 CGGACTGTCGTTGGTACACG 61.000 60.000 1.07 0.00 39.29 4.49
482 496 2.106332 GCCCATCTCCCGTACACG 59.894 66.667 0.00 0.00 39.44 4.49
519 533 2.804828 AAAGCTACGCTGGCTCCACC 62.805 60.000 0.00 0.00 39.62 4.61
557 571 5.181811 ACTTGATGTGATTGCAGAAAATCGA 59.818 36.000 0.00 0.00 39.06 3.59
558 572 5.396484 ACTTGATGTGATTGCAGAAAATCG 58.604 37.500 0.00 0.00 39.06 3.34
583 609 1.948635 CGGTTTGCAGCGGGTTTTG 60.949 57.895 0.00 0.00 40.35 2.44
600 627 4.481112 GCCAATCCTTGCACCGCG 62.481 66.667 0.00 0.00 0.00 6.46
674 703 2.779755 TATCGTGCTGTGTTGGGATT 57.220 45.000 0.00 0.00 0.00 3.01
769 812 4.285149 CGAATGCCGTAGCGCTGC 62.285 66.667 22.90 19.41 44.31 5.25
915 975 3.882888 TGTGGTGTGTCTTTCTTGGATTC 59.117 43.478 0.00 0.00 0.00 2.52
918 978 2.421388 CCTGTGGTGTGTCTTTCTTGGA 60.421 50.000 0.00 0.00 0.00 3.53
1258 1322 2.356793 GGATCAGATCAGGCGGCG 60.357 66.667 12.66 0.51 0.00 6.46
1320 1384 2.973899 GAAGCTCCACTGGCTCGA 59.026 61.111 0.00 0.00 39.30 4.04
1736 1827 5.960113 TCTCGAGGAGAAGAGAAAATGAAG 58.040 41.667 13.56 0.00 40.18 3.02
1808 2190 1.404035 GACACAAACCAACCCACAGAC 59.596 52.381 0.00 0.00 0.00 3.51
2217 3480 1.379044 CCACTGCCCCCATGTTCTC 60.379 63.158 0.00 0.00 0.00 2.87
2229 3492 2.472816 CAATTTCCACACAACCACTGC 58.527 47.619 0.00 0.00 0.00 4.40
2230 3493 2.101249 AGCAATTTCCACACAACCACTG 59.899 45.455 0.00 0.00 0.00 3.66
2231 3494 2.101249 CAGCAATTTCCACACAACCACT 59.899 45.455 0.00 0.00 0.00 4.00
2264 3527 2.629617 CAGCCAAGGAACCAAAAGTGAT 59.370 45.455 0.00 0.00 0.00 3.06
2440 3706 7.248437 GGCATGTGGAAATTACACTTAACTAC 58.752 38.462 10.00 0.00 39.52 2.73
2684 4252 0.971386 GGTACCAGTTCCAGAACCGA 59.029 55.000 7.15 0.00 42.06 4.69
2732 4300 3.950794 GACGTTGGCCATGGCGAGA 62.951 63.158 29.90 15.44 43.06 4.04
2773 4341 1.381872 ATGTAGGCGCTCACCTCCT 60.382 57.895 7.64 0.00 41.50 3.69
2916 4487 7.570324 GCTCCAAATTAATTCTCTCTATGCGAC 60.570 40.741 0.10 0.00 0.00 5.19
3061 4633 1.281899 GCTTAGCGACATCAGTCACC 58.718 55.000 0.00 0.00 45.23 4.02
3137 4709 0.966179 CAAAAGGCAGGGGGTACAAC 59.034 55.000 0.00 0.00 0.00 3.32
3209 4788 9.214957 CATCATGGAATGGAATGGAATAAAATG 57.785 33.333 0.00 0.00 46.73 2.32
3228 4807 3.469739 TGATGTCGTGAATCCATCATGG 58.530 45.455 0.00 0.00 43.93 3.66
3229 4808 3.497262 CCTGATGTCGTGAATCCATCATG 59.503 47.826 0.00 0.00 42.79 3.07
3230 4809 3.389002 TCCTGATGTCGTGAATCCATCAT 59.611 43.478 0.00 0.00 42.79 2.45
3231 4810 2.765699 TCCTGATGTCGTGAATCCATCA 59.234 45.455 0.00 0.00 41.85 3.07
3251 4830 0.804989 CATTCGACCAAAGGGCTGTC 59.195 55.000 0.00 0.00 37.90 3.51
3252 4831 0.609131 CCATTCGACCAAAGGGCTGT 60.609 55.000 0.00 0.00 37.90 4.40
3254 4833 4.743018 CCATTCGACCAAAGGGCT 57.257 55.556 0.00 0.00 37.90 5.19
3268 4847 2.029623 GTGAAGATGAAGGCATGCCAT 58.970 47.619 37.18 27.80 38.92 4.40
3271 4850 0.248377 GCGTGAAGATGAAGGCATGC 60.248 55.000 9.90 9.90 34.11 4.06
3304 4883 5.533903 ACATGTTTTCATTGCTCTCTCAGTT 59.466 36.000 0.00 0.00 38.64 3.16
3353 4933 2.286025 TCAGCAAGATCGAATGATTGCG 59.714 45.455 16.44 12.99 41.26 4.85
3382 4962 6.038271 GTGTTAATGCCCTGTTATGGACTTAG 59.962 42.308 0.00 0.00 0.00 2.18
3385 4965 4.263727 TGTGTTAATGCCCTGTTATGGACT 60.264 41.667 0.00 0.00 0.00 3.85
3386 4966 4.013728 TGTGTTAATGCCCTGTTATGGAC 58.986 43.478 0.00 0.00 0.00 4.02
3387 4967 4.269183 CTGTGTTAATGCCCTGTTATGGA 58.731 43.478 0.00 0.00 0.00 3.41
3389 4969 4.269183 TCCTGTGTTAATGCCCTGTTATG 58.731 43.478 0.00 0.00 0.00 1.90
3390 4970 4.526970 CTCCTGTGTTAATGCCCTGTTAT 58.473 43.478 0.00 0.00 0.00 1.89
3392 4972 2.795329 CTCCTGTGTTAATGCCCTGTT 58.205 47.619 0.00 0.00 0.00 3.16
3393 4973 1.614317 GCTCCTGTGTTAATGCCCTGT 60.614 52.381 0.00 0.00 0.00 4.00
3398 4978 4.708726 AATCTTGCTCCTGTGTTAATGC 57.291 40.909 0.00 0.00 0.00 3.56
3406 4986 4.712476 CATAGCCTAAATCTTGCTCCTGT 58.288 43.478 0.00 0.00 36.57 4.00
3410 4990 5.472820 AGAATGCATAGCCTAAATCTTGCTC 59.527 40.000 0.00 0.00 36.57 4.26
3416 4996 7.986085 TTCCTTAGAATGCATAGCCTAAATC 57.014 36.000 0.00 0.00 0.00 2.17
3430 5010 7.279981 GCACCTTTTGTTTTGTTTCCTTAGAAT 59.720 33.333 0.00 0.00 0.00 2.40
3447 5027 3.420893 TCTATTCTGGGTGCACCTTTTG 58.579 45.455 33.91 20.54 41.11 2.44
3471 5051 4.664150 AAATGCTCGGTGGAAAGAAAAA 57.336 36.364 0.00 0.00 0.00 1.94
3541 5121 4.227864 TGCAGAGTGAGAGACTGATAGA 57.772 45.455 0.00 0.00 33.83 1.98
3561 5141 5.760253 ACCTTTCTCGAATATGGTGCTAATG 59.240 40.000 3.94 0.00 0.00 1.90
3562 5142 5.930135 ACCTTTCTCGAATATGGTGCTAAT 58.070 37.500 3.94 0.00 0.00 1.73
3563 5143 5.353394 ACCTTTCTCGAATATGGTGCTAA 57.647 39.130 3.94 0.00 0.00 3.09
3565 5145 3.914426 ACCTTTCTCGAATATGGTGCT 57.086 42.857 3.94 0.00 0.00 4.40
3636 5216 4.218852 AGAGTGTGAGTACTTCTTACCAGC 59.781 45.833 0.00 0.00 32.58 4.85
3662 5242 4.925068 AGTTTGTTGCAGAACTGATGAAC 58.075 39.130 10.29 5.66 34.96 3.18
3700 5280 2.028130 AGCAGTCCTCTAGAATGTCGG 58.972 52.381 0.00 0.00 42.63 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.