Multiple sequence alignment - TraesCS2D01G349700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G349700 chr2D 100.000 3366 0 0 1 3366 447147878 447151243 0.000000e+00 6216.0
1 TraesCS2D01G349700 chr2D 96.522 345 10 2 356 698 547979856 547979512 1.360000e-158 569.0
2 TraesCS2D01G349700 chr2D 96.491 342 11 1 356 696 509938758 509938417 6.300000e-157 564.0
3 TraesCS2D01G349700 chr2D 95.918 343 12 2 354 695 651527243 651526902 3.790000e-154 555.0
4 TraesCS2D01G349700 chr2D 95.906 342 13 1 356 696 569200456 569200115 1.360000e-153 553.0
5 TraesCS2D01G349700 chr2D 81.520 487 80 6 1216 1694 446858922 446858438 3.150000e-105 392.0
6 TraesCS2D01G349700 chr2D 79.508 488 97 3 1209 1695 447161371 447161856 8.940000e-91 344.0
7 TraesCS2D01G349700 chr2D 79.012 486 84 5 1216 1686 446942048 446942530 1.950000e-82 316.0
8 TraesCS2D01G349700 chr2D 73.951 572 111 28 1821 2361 446858327 446857763 2.650000e-46 196.0
9 TraesCS2D01G349700 chr2D 85.380 171 15 3 5 174 360481521 360481682 5.780000e-38 169.0
10 TraesCS2D01G349700 chr2D 74.492 443 88 20 1830 2258 447250427 447249996 5.780000e-38 169.0
11 TraesCS2D01G349700 chr2D 85.606 132 10 4 5 136 594651298 594651420 2.730000e-26 130.0
12 TraesCS2D01G349700 chr2A 92.704 1864 94 22 696 2540 591604399 591606239 0.000000e+00 2651.0
13 TraesCS2D01G349700 chr2A 81.109 487 82 6 1216 1694 591264531 591265015 6.820000e-102 381.0
14 TraesCS2D01G349700 chr2A 80.404 495 88 9 1209 1699 591607984 591608473 5.310000e-98 368.0
15 TraesCS2D01G349700 chr2A 78.926 484 84 11 1216 1684 591278020 591278500 2.520000e-81 313.0
16 TraesCS2D01G349700 chr2A 93.296 179 3 3 2631 2808 591606432 591606602 4.310000e-64 255.0
17 TraesCS2D01G349700 chr2A 74.825 572 106 28 1821 2361 591265114 591265678 1.220000e-54 224.0
18 TraesCS2D01G349700 chr2A 73.529 544 126 17 1831 2364 591775004 591774469 1.230000e-44 191.0
19 TraesCS2D01G349700 chr2A 86.207 174 14 5 7 179 514235637 514235801 2.670000e-41 180.0
20 TraesCS2D01G349700 chr2B 92.123 1828 98 14 739 2547 526840579 526842379 0.000000e+00 2536.0
21 TraesCS2D01G349700 chr2B 74.831 1180 246 43 1209 2366 526844727 526845877 1.400000e-133 486.0
22 TraesCS2D01G349700 chr2B 81.520 487 80 6 1216 1694 526763370 526763854 3.150000e-105 392.0
23 TraesCS2D01G349700 chr2B 78.234 487 86 13 1216 1686 526776248 526776730 9.130000e-76 294.0
24 TraesCS2D01G349700 chr2B 90.783 217 8 5 696 907 535239224 535239433 2.560000e-71 279.0
25 TraesCS2D01G349700 chr2B 74.561 570 111 25 1821 2361 526763964 526764528 5.650000e-53 219.0
26 TraesCS2D01G349700 chr2B 95.000 140 5 2 2660 2798 526842424 526842562 5.650000e-53 219.0
27 TraesCS2D01G349700 chr2B 74.603 441 99 13 1827 2264 526886104 526885674 7.420000e-42 182.0
28 TraesCS2D01G349700 chr2B 95.000 100 5 0 256 355 535239132 535239231 1.250000e-34 158.0
29 TraesCS2D01G349700 chr2B 94.792 96 5 0 256 351 526799731 526799826 2.090000e-32 150.0
30 TraesCS2D01G349700 chr5A 96.137 466 17 1 2902 3366 382783580 382784045 0.000000e+00 760.0
31 TraesCS2D01G349700 chr5A 78.776 490 77 16 1216 1684 582980963 582981446 1.520000e-78 303.0
32 TraesCS2D01G349700 chr5A 87.006 177 13 4 5 180 31463338 31463171 1.230000e-44 191.0
33 TraesCS2D01G349700 chr5A 95.000 40 2 0 2848 2887 382782639 382782678 2.800000e-06 63.9
34 TraesCS2D01G349700 chr3A 95.494 466 20 1 2902 3366 395750748 395750283 0.000000e+00 743.0
35 TraesCS2D01G349700 chr3A 94.231 52 3 0 2849 2900 395751703 395751652 2.780000e-11 80.5
36 TraesCS2D01G349700 chr5D 97.947 341 6 1 356 695 367986775 367987115 1.040000e-164 590.0
37 TraesCS2D01G349700 chr5D 81.776 428 58 15 1216 1627 463087470 463087893 1.160000e-89 340.0
38 TraesCS2D01G349700 chr5D 84.393 173 16 4 5 174 379580254 379580418 3.480000e-35 159.0
39 TraesCS2D01G349700 chr3D 95.965 347 8 2 355 695 296183954 296183608 2.930000e-155 558.0
40 TraesCS2D01G349700 chr3D 80.571 175 24 3 5 178 491639615 491639780 3.530000e-25 126.0
41 TraesCS2D01G349700 chr4D 96.188 341 11 2 356 695 20532516 20532177 1.060000e-154 556.0
42 TraesCS2D01G349700 chr4D 95.665 346 13 2 356 699 220879220 220879565 3.790000e-154 555.0
43 TraesCS2D01G349700 chr6D 95.906 342 13 1 356 696 457068450 457068791 1.360000e-153 553.0
44 TraesCS2D01G349700 chr5B 78.163 490 70 21 1216 1684 569825568 569826041 9.200000e-71 278.0
45 TraesCS2D01G349700 chr5B 80.062 321 58 5 3049 3366 572961671 572961988 2.020000e-57 233.0
46 TraesCS2D01G349700 chr7B 86.932 176 11 5 5 178 592346854 592347019 1.590000e-43 187.0
47 TraesCS2D01G349700 chr7A 76.163 344 73 9 2955 3293 487865808 487865469 4.470000e-39 172.0
48 TraesCS2D01G349700 chr7D 84.091 176 16 5 5 178 392753154 392753319 3.480000e-35 159.0
49 TraesCS2D01G349700 chr7D 97.260 73 2 0 5 77 94126862 94126790 1.270000e-24 124.0
50 TraesCS2D01G349700 chr3B 80.000 160 20 9 21 178 22883093 22883242 1.280000e-19 108.0
51 TraesCS2D01G349700 chr3B 79.878 164 17 11 21 180 715654908 715655059 4.590000e-19 106.0
52 TraesCS2D01G349700 chr1D 79.141 163 20 10 21 180 251990544 251990695 2.140000e-17 100.0
53 TraesCS2D01G349700 chr6B 78.182 165 21 11 18 179 695842142 695841990 1.290000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G349700 chr2D 447147878 447151243 3365 False 6216.000000 6216 100.000000 1 3366 1 chr2D.!!$F3 3365
1 TraesCS2D01G349700 chr2D 446857763 446858922 1159 True 294.000000 392 77.735500 1216 2361 2 chr2D.!!$R6 1145
2 TraesCS2D01G349700 chr2A 591604399 591608473 4074 False 1091.333333 2651 88.801333 696 2808 3 chr2A.!!$F4 2112
3 TraesCS2D01G349700 chr2A 591264531 591265678 1147 False 302.500000 381 77.967000 1216 2361 2 chr2A.!!$F3 1145
4 TraesCS2D01G349700 chr2B 526840579 526845877 5298 False 1080.333333 2536 87.318000 739 2798 3 chr2B.!!$F4 2059
5 TraesCS2D01G349700 chr2B 526763370 526764528 1158 False 305.500000 392 78.040500 1216 2361 2 chr2B.!!$F3 1145
6 TraesCS2D01G349700 chr5A 382782639 382784045 1406 False 411.950000 760 95.568500 2848 3366 2 chr5A.!!$F2 518
7 TraesCS2D01G349700 chr3A 395750283 395751703 1420 True 411.750000 743 94.862500 2849 3366 2 chr3A.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.034476 GGCGGTAGGCTGTTATACCC 59.966 60.0 0.00 0.0 42.94 3.69 F
66 67 0.034476 GGCTGTTATACCCTACCGCC 59.966 60.0 0.00 0.0 37.46 6.13 F
214 215 0.036306 GGGTGTTTGAGTGACCGGAT 59.964 55.0 9.46 0.0 0.00 4.18 F
222 223 0.036388 GAGTGACCGGATTTGCCAGA 60.036 55.0 9.46 0.0 35.94 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1799 0.250234 TCTTGGGCGAATCCAGACAG 59.750 55.000 0.00 0.00 38.17 3.51 R
1812 1838 2.439960 ATGTTATCTGGCGGCCGGA 61.440 57.895 31.31 31.31 43.71 5.14 R
2078 2104 2.479730 CCGAGAACTCCATCTTGTACGG 60.480 54.545 0.00 0.00 0.00 4.02 R
2417 2467 1.273438 TGGACCCCTCTGTAGTTACCC 60.273 57.143 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.749839 TGCGGTAGGGCATGCAAC 60.750 61.111 21.36 13.81 38.17 4.17
22 23 3.518068 GCGGTAGGGCATGCAACC 61.518 66.667 21.36 20.81 0.00 3.77
28 29 2.828549 GGGCATGCAACCCTACCG 60.829 66.667 21.36 0.00 44.68 4.02
29 30 3.518068 GGCATGCAACCCTACCGC 61.518 66.667 21.36 0.00 0.00 5.68
30 31 3.518068 GCATGCAACCCTACCGCC 61.518 66.667 14.21 0.00 0.00 6.13
31 32 2.045438 CATGCAACCCTACCGCCA 60.045 61.111 0.00 0.00 0.00 5.69
32 33 2.114670 CATGCAACCCTACCGCCAG 61.115 63.158 0.00 0.00 0.00 4.85
33 34 3.344137 ATGCAACCCTACCGCCAGG 62.344 63.158 0.00 0.00 45.13 4.45
39 40 2.687566 CCTACCGCCAGGGACCTT 60.688 66.667 0.00 0.00 43.47 3.50
40 41 2.584608 CTACCGCCAGGGACCTTG 59.415 66.667 0.00 0.00 43.47 3.61
41 42 3.006728 TACCGCCAGGGACCTTGG 61.007 66.667 18.34 18.34 43.47 3.61
52 53 2.928396 ACCTTGGCGGTAGGCTGT 60.928 61.111 0.00 0.00 46.73 4.40
53 54 2.351276 CCTTGGCGGTAGGCTGTT 59.649 61.111 0.00 0.00 44.18 3.16
54 55 1.196104 ACCTTGGCGGTAGGCTGTTA 61.196 55.000 0.00 0.00 46.73 2.41
55 56 0.180406 CCTTGGCGGTAGGCTGTTAT 59.820 55.000 0.00 0.00 44.18 1.89
56 57 1.414919 CCTTGGCGGTAGGCTGTTATA 59.585 52.381 0.00 0.00 44.18 0.98
57 58 2.480845 CTTGGCGGTAGGCTGTTATAC 58.519 52.381 0.00 0.00 44.18 1.47
58 59 0.754472 TGGCGGTAGGCTGTTATACC 59.246 55.000 0.00 0.00 44.18 2.73
59 60 0.034476 GGCGGTAGGCTGTTATACCC 59.966 60.000 0.00 0.00 42.94 3.69
60 61 1.046204 GCGGTAGGCTGTTATACCCT 58.954 55.000 0.00 0.00 38.60 4.34
61 62 2.242043 GCGGTAGGCTGTTATACCCTA 58.758 52.381 0.00 0.00 38.60 3.53
62 63 2.029560 GCGGTAGGCTGTTATACCCTAC 60.030 54.545 0.00 7.39 46.60 3.18
64 65 3.930634 GTAGGCTGTTATACCCTACCG 57.069 52.381 0.00 0.00 43.31 4.02
65 66 1.046204 AGGCTGTTATACCCTACCGC 58.954 55.000 0.00 0.00 0.00 5.68
66 67 0.034476 GGCTGTTATACCCTACCGCC 59.966 60.000 0.00 0.00 37.46 6.13
67 68 0.754472 GCTGTTATACCCTACCGCCA 59.246 55.000 0.00 0.00 0.00 5.69
68 69 1.346722 GCTGTTATACCCTACCGCCAT 59.653 52.381 0.00 0.00 0.00 4.40
69 70 2.870435 GCTGTTATACCCTACCGCCATG 60.870 54.545 0.00 0.00 0.00 3.66
70 71 2.631062 CTGTTATACCCTACCGCCATGA 59.369 50.000 0.00 0.00 0.00 3.07
71 72 3.039743 TGTTATACCCTACCGCCATGAA 58.960 45.455 0.00 0.00 0.00 2.57
72 73 3.181463 TGTTATACCCTACCGCCATGAAC 60.181 47.826 0.00 0.00 0.00 3.18
73 74 0.763035 ATACCCTACCGCCATGAACC 59.237 55.000 0.00 0.00 0.00 3.62
74 75 1.339644 TACCCTACCGCCATGAACCC 61.340 60.000 0.00 0.00 0.00 4.11
75 76 2.375345 CCCTACCGCCATGAACCCT 61.375 63.158 0.00 0.00 0.00 4.34
76 77 1.153168 CCTACCGCCATGAACCCTG 60.153 63.158 0.00 0.00 0.00 4.45
77 78 1.819632 CTACCGCCATGAACCCTGC 60.820 63.158 0.00 0.00 0.00 4.85
78 79 3.338275 TACCGCCATGAACCCTGCC 62.338 63.158 0.00 0.00 0.00 4.85
79 80 4.738998 CCGCCATGAACCCTGCCA 62.739 66.667 0.00 0.00 0.00 4.92
80 81 2.440796 CGCCATGAACCCTGCCAT 60.441 61.111 0.00 0.00 0.00 4.40
81 82 2.484062 CGCCATGAACCCTGCCATC 61.484 63.158 0.00 0.00 0.00 3.51
82 83 2.129785 GCCATGAACCCTGCCATCC 61.130 63.158 0.00 0.00 0.00 3.51
83 84 1.616921 CCATGAACCCTGCCATCCT 59.383 57.895 0.00 0.00 0.00 3.24
84 85 0.754217 CCATGAACCCTGCCATCCTG 60.754 60.000 0.00 0.00 0.00 3.86
85 86 0.754217 CATGAACCCTGCCATCCTGG 60.754 60.000 0.00 0.00 41.55 4.45
102 103 4.390048 GCGGTAGCAAAAGGGTCA 57.610 55.556 0.00 0.00 44.35 4.02
103 104 2.636299 GCGGTAGCAAAAGGGTCAA 58.364 52.632 0.00 0.00 44.35 3.18
104 105 0.955905 GCGGTAGCAAAAGGGTCAAA 59.044 50.000 0.00 0.00 44.35 2.69
105 106 1.544246 GCGGTAGCAAAAGGGTCAAAT 59.456 47.619 0.00 0.00 44.35 2.32
106 107 2.415491 GCGGTAGCAAAAGGGTCAAATC 60.415 50.000 0.00 0.00 44.35 2.17
107 108 2.163613 CGGTAGCAAAAGGGTCAAATCC 59.836 50.000 0.00 0.00 0.00 3.01
108 109 3.161866 GGTAGCAAAAGGGTCAAATCCA 58.838 45.455 0.00 0.00 0.00 3.41
109 110 3.193479 GGTAGCAAAAGGGTCAAATCCAG 59.807 47.826 0.00 0.00 0.00 3.86
110 111 3.243359 AGCAAAAGGGTCAAATCCAGA 57.757 42.857 0.00 0.00 0.00 3.86
111 112 3.575805 AGCAAAAGGGTCAAATCCAGAA 58.424 40.909 0.00 0.00 0.00 3.02
112 113 3.966665 AGCAAAAGGGTCAAATCCAGAAA 59.033 39.130 0.00 0.00 0.00 2.52
113 114 4.408596 AGCAAAAGGGTCAAATCCAGAAAA 59.591 37.500 0.00 0.00 0.00 2.29
114 115 5.104569 AGCAAAAGGGTCAAATCCAGAAAAA 60.105 36.000 0.00 0.00 0.00 1.94
138 139 7.929941 AAAATTCAGACTAGGGTCAGATTTC 57.070 36.000 0.00 0.00 44.36 2.17
139 140 6.627087 AATTCAGACTAGGGTCAGATTTCA 57.373 37.500 0.00 0.00 44.36 2.69
140 141 6.627087 ATTCAGACTAGGGTCAGATTTCAA 57.373 37.500 0.00 0.00 44.36 2.69
141 142 6.627087 TTCAGACTAGGGTCAGATTTCAAT 57.373 37.500 0.00 0.00 44.36 2.57
142 143 6.627087 TCAGACTAGGGTCAGATTTCAATT 57.373 37.500 0.00 0.00 44.36 2.32
143 144 7.733773 TCAGACTAGGGTCAGATTTCAATTA 57.266 36.000 0.00 0.00 44.36 1.40
144 145 7.556844 TCAGACTAGGGTCAGATTTCAATTAC 58.443 38.462 0.00 0.00 44.36 1.89
145 146 7.400339 TCAGACTAGGGTCAGATTTCAATTACT 59.600 37.037 0.00 0.00 44.36 2.24
146 147 8.043710 CAGACTAGGGTCAGATTTCAATTACTT 58.956 37.037 0.00 0.00 44.36 2.24
147 148 8.606830 AGACTAGGGTCAGATTTCAATTACTTT 58.393 33.333 0.00 0.00 44.36 2.66
148 149 8.794335 ACTAGGGTCAGATTTCAATTACTTTC 57.206 34.615 0.00 0.00 0.00 2.62
149 150 8.383175 ACTAGGGTCAGATTTCAATTACTTTCA 58.617 33.333 0.00 0.00 0.00 2.69
150 151 9.231297 CTAGGGTCAGATTTCAATTACTTTCAA 57.769 33.333 0.00 0.00 0.00 2.69
151 152 8.477419 AGGGTCAGATTTCAATTACTTTCAAA 57.523 30.769 0.00 0.00 0.00 2.69
152 153 8.923270 AGGGTCAGATTTCAATTACTTTCAAAA 58.077 29.630 0.00 0.00 0.00 2.44
153 154 9.541143 GGGTCAGATTTCAATTACTTTCAAAAA 57.459 29.630 0.00 0.00 0.00 1.94
176 177 7.838771 AAAGGATCAAAGCATGAAATTTAGC 57.161 32.000 0.00 0.00 42.54 3.09
177 178 5.910614 AGGATCAAAGCATGAAATTTAGCC 58.089 37.500 0.00 0.00 42.54 3.93
178 179 4.741676 GGATCAAAGCATGAAATTTAGCCG 59.258 41.667 0.00 0.00 42.54 5.52
179 180 3.510719 TCAAAGCATGAAATTTAGCCGC 58.489 40.909 0.00 0.00 34.30 6.53
180 181 3.056962 TCAAAGCATGAAATTTAGCCGCA 60.057 39.130 0.00 0.00 34.30 5.69
181 182 3.806625 AAGCATGAAATTTAGCCGCAT 57.193 38.095 0.00 0.00 0.00 4.73
182 183 3.360249 AGCATGAAATTTAGCCGCATC 57.640 42.857 0.00 0.00 0.00 3.91
183 184 2.035066 AGCATGAAATTTAGCCGCATCC 59.965 45.455 0.00 0.00 0.00 3.51
184 185 2.653890 CATGAAATTTAGCCGCATCCG 58.346 47.619 0.00 0.00 0.00 4.18
194 195 4.663444 CGCATCCGGATTCTCCTC 57.337 61.111 16.19 0.00 33.30 3.71
195 196 1.372251 CGCATCCGGATTCTCCTCG 60.372 63.158 16.19 7.80 33.30 4.63
196 197 1.005630 GCATCCGGATTCTCCTCGG 60.006 63.158 16.19 1.51 44.59 4.63
197 198 1.668294 CATCCGGATTCTCCTCGGG 59.332 63.158 16.19 0.00 43.54 5.14
198 199 1.115930 CATCCGGATTCTCCTCGGGT 61.116 60.000 16.19 0.00 43.54 5.28
199 200 1.115930 ATCCGGATTCTCCTCGGGTG 61.116 60.000 12.38 0.00 43.54 4.61
200 201 2.058595 CCGGATTCTCCTCGGGTGT 61.059 63.158 0.00 0.00 40.07 4.16
201 202 1.614241 CCGGATTCTCCTCGGGTGTT 61.614 60.000 0.00 0.00 40.07 3.32
202 203 0.249398 CGGATTCTCCTCGGGTGTTT 59.751 55.000 0.00 0.00 33.30 2.83
203 204 1.739067 GGATTCTCCTCGGGTGTTTG 58.261 55.000 0.00 0.00 32.53 2.93
204 205 1.278127 GGATTCTCCTCGGGTGTTTGA 59.722 52.381 0.00 0.00 32.53 2.69
205 206 2.622436 GATTCTCCTCGGGTGTTTGAG 58.378 52.381 0.00 0.00 0.00 3.02
206 207 1.420430 TTCTCCTCGGGTGTTTGAGT 58.580 50.000 0.00 0.00 0.00 3.41
207 208 0.679505 TCTCCTCGGGTGTTTGAGTG 59.320 55.000 0.00 0.00 0.00 3.51
208 209 0.679505 CTCCTCGGGTGTTTGAGTGA 59.320 55.000 0.00 0.00 0.00 3.41
209 210 0.391597 TCCTCGGGTGTTTGAGTGAC 59.608 55.000 0.00 0.00 0.00 3.67
210 211 0.602905 CCTCGGGTGTTTGAGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
211 212 0.944311 CTCGGGTGTTTGAGTGACCG 60.944 60.000 0.00 0.00 42.45 4.79
212 213 1.959226 CGGGTGTTTGAGTGACCGG 60.959 63.158 0.00 0.00 37.80 5.28
213 214 1.448497 GGGTGTTTGAGTGACCGGA 59.552 57.895 9.46 0.00 0.00 5.14
214 215 0.036306 GGGTGTTTGAGTGACCGGAT 59.964 55.000 9.46 0.00 0.00 4.18
215 216 1.544759 GGGTGTTTGAGTGACCGGATT 60.545 52.381 9.46 0.00 0.00 3.01
216 217 2.227194 GGTGTTTGAGTGACCGGATTT 58.773 47.619 9.46 0.00 0.00 2.17
217 218 2.031157 GGTGTTTGAGTGACCGGATTTG 60.031 50.000 9.46 0.00 0.00 2.32
218 219 1.606668 TGTTTGAGTGACCGGATTTGC 59.393 47.619 9.46 0.00 0.00 3.68
219 220 1.068541 GTTTGAGTGACCGGATTTGCC 60.069 52.381 9.46 0.00 0.00 4.52
220 221 0.109532 TTGAGTGACCGGATTTGCCA 59.890 50.000 9.46 0.00 35.94 4.92
221 222 0.321564 TGAGTGACCGGATTTGCCAG 60.322 55.000 9.46 0.00 35.94 4.85
222 223 0.036388 GAGTGACCGGATTTGCCAGA 60.036 55.000 9.46 0.00 35.94 3.86
223 224 0.620556 AGTGACCGGATTTGCCAGAT 59.379 50.000 9.46 0.00 35.94 2.90
224 225 1.017387 GTGACCGGATTTGCCAGATC 58.983 55.000 9.46 0.00 35.94 2.75
225 226 0.107214 TGACCGGATTTGCCAGATCC 60.107 55.000 9.46 4.17 39.76 3.36
229 230 3.788672 GGATTTGCCAGATCCGAGT 57.211 52.632 0.00 0.00 34.24 4.18
230 231 1.303309 GGATTTGCCAGATCCGAGTG 58.697 55.000 0.00 0.00 34.24 3.51
231 232 1.407437 GGATTTGCCAGATCCGAGTGT 60.407 52.381 0.00 0.00 34.24 3.55
232 233 2.158957 GGATTTGCCAGATCCGAGTGTA 60.159 50.000 0.00 0.00 34.24 2.90
233 234 2.672961 TTTGCCAGATCCGAGTGTAG 57.327 50.000 0.00 0.00 0.00 2.74
234 235 1.847328 TTGCCAGATCCGAGTGTAGA 58.153 50.000 0.00 0.00 0.00 2.59
235 236 2.073252 TGCCAGATCCGAGTGTAGAT 57.927 50.000 0.00 0.00 0.00 1.98
236 237 1.683385 TGCCAGATCCGAGTGTAGATG 59.317 52.381 0.00 0.00 0.00 2.90
237 238 1.604185 GCCAGATCCGAGTGTAGATGC 60.604 57.143 0.00 0.00 0.00 3.91
238 239 1.959985 CCAGATCCGAGTGTAGATGCT 59.040 52.381 0.00 0.00 0.00 3.79
239 240 2.030363 CCAGATCCGAGTGTAGATGCTC 60.030 54.545 0.00 0.00 0.00 4.26
240 241 2.884012 CAGATCCGAGTGTAGATGCTCT 59.116 50.000 0.00 0.00 0.00 4.09
241 242 4.068599 CAGATCCGAGTGTAGATGCTCTA 58.931 47.826 0.00 0.00 0.00 2.43
242 243 4.517075 CAGATCCGAGTGTAGATGCTCTAA 59.483 45.833 0.00 0.00 29.58 2.10
243 244 4.759693 AGATCCGAGTGTAGATGCTCTAAG 59.240 45.833 0.00 0.00 29.58 2.18
244 245 2.619177 TCCGAGTGTAGATGCTCTAAGC 59.381 50.000 0.00 0.00 42.82 3.09
245 246 2.287909 CCGAGTGTAGATGCTCTAAGCC 60.288 54.545 0.00 0.00 41.51 4.35
246 247 2.359214 CGAGTGTAGATGCTCTAAGCCA 59.641 50.000 0.00 0.00 41.51 4.75
247 248 3.005261 CGAGTGTAGATGCTCTAAGCCAT 59.995 47.826 0.00 0.00 41.51 4.40
248 249 4.555262 GAGTGTAGATGCTCTAAGCCATC 58.445 47.826 0.00 0.00 41.51 3.51
249 250 3.005261 AGTGTAGATGCTCTAAGCCATCG 59.995 47.826 0.00 0.00 41.51 3.84
250 251 2.288457 TGTAGATGCTCTAAGCCATCGC 60.288 50.000 0.00 0.00 41.51 4.58
251 252 0.755079 AGATGCTCTAAGCCATCGCA 59.245 50.000 0.00 0.00 41.51 5.10
252 253 0.864455 GATGCTCTAAGCCATCGCAC 59.136 55.000 0.00 0.00 41.51 5.34
253 254 0.178767 ATGCTCTAAGCCATCGCACA 59.821 50.000 0.00 0.00 41.51 4.57
254 255 0.740868 TGCTCTAAGCCATCGCACAC 60.741 55.000 0.00 0.00 41.51 3.82
255 256 1.432270 GCTCTAAGCCATCGCACACC 61.432 60.000 0.00 0.00 34.48 4.16
256 257 0.811616 CTCTAAGCCATCGCACACCC 60.812 60.000 0.00 0.00 37.52 4.61
257 258 1.078497 CTAAGCCATCGCACACCCA 60.078 57.895 0.00 0.00 37.52 4.51
258 259 0.464373 CTAAGCCATCGCACACCCAT 60.464 55.000 0.00 0.00 37.52 4.00
259 260 0.463654 TAAGCCATCGCACACCCATC 60.464 55.000 0.00 0.00 37.52 3.51
260 261 3.576356 GCCATCGCACACCCATCG 61.576 66.667 0.00 0.00 34.03 3.84
261 262 3.576356 CCATCGCACACCCATCGC 61.576 66.667 0.00 0.00 0.00 4.58
262 263 2.819154 CATCGCACACCCATCGCA 60.819 61.111 0.00 0.00 0.00 5.10
263 264 2.819595 ATCGCACACCCATCGCAC 60.820 61.111 0.00 0.00 0.00 5.34
264 265 3.604129 ATCGCACACCCATCGCACA 62.604 57.895 0.00 0.00 0.00 4.57
265 266 4.088762 CGCACACCCATCGCACAC 62.089 66.667 0.00 0.00 0.00 3.82
266 267 4.088762 GCACACCCATCGCACACG 62.089 66.667 0.00 0.00 42.01 4.49
267 268 2.664851 CACACCCATCGCACACGT 60.665 61.111 0.00 0.00 41.18 4.49
268 269 2.110213 ACACCCATCGCACACGTT 59.890 55.556 0.00 0.00 41.18 3.99
269 270 1.525077 ACACCCATCGCACACGTTT 60.525 52.632 0.00 0.00 41.18 3.60
270 271 1.206578 CACCCATCGCACACGTTTC 59.793 57.895 0.00 0.00 41.18 2.78
271 272 2.314647 ACCCATCGCACACGTTTCG 61.315 57.895 0.00 0.00 41.18 3.46
272 273 2.202171 CCATCGCACACGTTTCGC 60.202 61.111 0.00 0.00 41.18 4.70
273 274 2.667318 CCATCGCACACGTTTCGCT 61.667 57.895 0.00 0.00 41.18 4.93
274 275 1.204062 CATCGCACACGTTTCGCTT 59.796 52.632 0.00 0.00 41.18 4.68
275 276 0.384230 CATCGCACACGTTTCGCTTT 60.384 50.000 0.00 0.00 41.18 3.51
276 277 0.384230 ATCGCACACGTTTCGCTTTG 60.384 50.000 0.00 0.00 41.18 2.77
277 278 1.297304 CGCACACGTTTCGCTTTGT 60.297 52.632 0.00 0.00 33.53 2.83
278 279 1.520133 CGCACACGTTTCGCTTTGTG 61.520 55.000 0.00 6.90 41.92 3.33
279 280 1.199852 GCACACGTTTCGCTTTGTGG 61.200 55.000 11.23 0.00 39.83 4.17
280 281 1.063488 ACACGTTTCGCTTTGTGGC 59.937 52.632 0.00 0.00 36.67 5.01
281 282 1.063327 CACGTTTCGCTTTGTGGCA 59.937 52.632 0.00 0.00 0.00 4.92
282 283 0.524392 CACGTTTCGCTTTGTGGCAA 60.524 50.000 0.00 0.00 0.00 4.52
283 284 0.171455 ACGTTTCGCTTTGTGGCAAA 59.829 45.000 0.00 0.00 0.00 3.68
284 285 0.570272 CGTTTCGCTTTGTGGCAAAC 59.430 50.000 0.00 0.00 33.89 2.93
285 286 1.634702 GTTTCGCTTTGTGGCAAACA 58.365 45.000 0.00 0.00 35.48 2.83
286 287 1.587946 GTTTCGCTTTGTGGCAAACAG 59.412 47.619 0.00 0.00 40.74 3.16
287 288 0.814457 TTCGCTTTGTGGCAAACAGT 59.186 45.000 0.00 0.00 40.74 3.55
288 289 0.814457 TCGCTTTGTGGCAAACAGTT 59.186 45.000 0.00 0.00 40.74 3.16
289 290 1.199624 CGCTTTGTGGCAAACAGTTC 58.800 50.000 0.00 0.00 40.74 3.01
290 291 1.202290 CGCTTTGTGGCAAACAGTTCT 60.202 47.619 0.00 0.00 40.74 3.01
291 292 2.032799 CGCTTTGTGGCAAACAGTTCTA 59.967 45.455 0.00 0.00 40.74 2.10
292 293 3.304659 CGCTTTGTGGCAAACAGTTCTAT 60.305 43.478 0.00 0.00 40.74 1.98
293 294 4.620982 GCTTTGTGGCAAACAGTTCTATT 58.379 39.130 0.00 0.00 40.74 1.73
294 295 5.049828 GCTTTGTGGCAAACAGTTCTATTT 58.950 37.500 0.00 0.00 40.74 1.40
295 296 5.523552 GCTTTGTGGCAAACAGTTCTATTTT 59.476 36.000 0.00 0.00 40.74 1.82
296 297 6.037062 GCTTTGTGGCAAACAGTTCTATTTTT 59.963 34.615 0.00 0.00 40.74 1.94
297 298 7.532682 TTTGTGGCAAACAGTTCTATTTTTC 57.467 32.000 0.00 0.00 40.74 2.29
298 299 6.463995 TGTGGCAAACAGTTCTATTTTTCT 57.536 33.333 0.00 0.00 33.78 2.52
299 300 7.575414 TGTGGCAAACAGTTCTATTTTTCTA 57.425 32.000 0.00 0.00 33.78 2.10
300 301 7.422399 TGTGGCAAACAGTTCTATTTTTCTAC 58.578 34.615 0.00 0.00 33.78 2.59
301 302 6.861572 GTGGCAAACAGTTCTATTTTTCTACC 59.138 38.462 0.00 0.00 0.00 3.18
302 303 6.084277 GGCAAACAGTTCTATTTTTCTACCG 58.916 40.000 0.00 0.00 0.00 4.02
303 304 6.293790 GGCAAACAGTTCTATTTTTCTACCGT 60.294 38.462 0.00 0.00 0.00 4.83
304 305 6.577427 GCAAACAGTTCTATTTTTCTACCGTG 59.423 38.462 0.00 0.00 0.00 4.94
305 306 7.636326 CAAACAGTTCTATTTTTCTACCGTGT 58.364 34.615 0.00 0.00 0.00 4.49
306 307 6.780706 ACAGTTCTATTTTTCTACCGTGTG 57.219 37.500 0.00 0.00 0.00 3.82
307 308 6.285990 ACAGTTCTATTTTTCTACCGTGTGT 58.714 36.000 0.00 0.00 0.00 3.72
308 309 7.436118 ACAGTTCTATTTTTCTACCGTGTGTA 58.564 34.615 0.00 0.00 0.00 2.90
309 310 7.927629 ACAGTTCTATTTTTCTACCGTGTGTAA 59.072 33.333 0.00 0.00 0.00 2.41
310 311 8.932791 CAGTTCTATTTTTCTACCGTGTGTAAT 58.067 33.333 0.00 0.00 0.00 1.89
311 312 8.932791 AGTTCTATTTTTCTACCGTGTGTAATG 58.067 33.333 0.00 0.00 0.00 1.90
312 313 8.928733 GTTCTATTTTTCTACCGTGTGTAATGA 58.071 33.333 0.00 0.00 0.00 2.57
313 314 9.661563 TTCTATTTTTCTACCGTGTGTAATGAT 57.338 29.630 0.00 0.00 0.00 2.45
314 315 9.661563 TCTATTTTTCTACCGTGTGTAATGATT 57.338 29.630 0.00 0.00 0.00 2.57
315 316 9.916397 CTATTTTTCTACCGTGTGTAATGATTC 57.084 33.333 0.00 0.00 0.00 2.52
316 317 7.731882 TTTTTCTACCGTGTGTAATGATTCA 57.268 32.000 0.00 0.00 0.00 2.57
317 318 7.731882 TTTTCTACCGTGTGTAATGATTCAA 57.268 32.000 0.00 0.00 0.00 2.69
318 319 7.915293 TTTCTACCGTGTGTAATGATTCAAT 57.085 32.000 0.00 0.00 0.00 2.57
319 320 7.534085 TTCTACCGTGTGTAATGATTCAATC 57.466 36.000 0.00 0.00 0.00 2.67
320 321 6.635755 TCTACCGTGTGTAATGATTCAATCA 58.364 36.000 1.59 1.59 44.55 2.57
321 322 5.545658 ACCGTGTGTAATGATTCAATCAC 57.454 39.130 0.98 10.29 43.01 3.06
322 323 5.000591 ACCGTGTGTAATGATTCAATCACA 58.999 37.500 0.98 13.78 43.01 3.58
323 324 5.106712 ACCGTGTGTAATGATTCAATCACAC 60.107 40.000 25.20 25.20 46.47 3.82
336 337 9.485206 TGATTCAATCACACACATATAGATCTG 57.515 33.333 5.18 0.00 33.59 2.90
337 338 9.486497 GATTCAATCACACACATATAGATCTGT 57.514 33.333 5.18 0.16 0.00 3.41
338 339 8.877808 TTCAATCACACACATATAGATCTGTC 57.122 34.615 5.18 0.00 0.00 3.51
339 340 8.242729 TCAATCACACACATATAGATCTGTCT 57.757 34.615 5.18 0.00 38.52 3.41
340 341 8.699130 TCAATCACACACATATAGATCTGTCTT 58.301 33.333 5.18 0.00 35.87 3.01
341 342 8.976471 CAATCACACACATATAGATCTGTCTTC 58.024 37.037 5.18 0.00 35.87 2.87
342 343 7.645058 TCACACACATATAGATCTGTCTTCA 57.355 36.000 5.18 0.00 35.87 3.02
343 344 8.242729 TCACACACATATAGATCTGTCTTCAT 57.757 34.615 5.18 0.00 35.87 2.57
344 345 9.354673 TCACACACATATAGATCTGTCTTCATA 57.645 33.333 5.18 0.00 35.87 2.15
345 346 9.623350 CACACACATATAGATCTGTCTTCATAG 57.377 37.037 5.18 0.00 35.87 2.23
346 347 8.303156 ACACACATATAGATCTGTCTTCATAGC 58.697 37.037 5.18 0.00 35.87 2.97
347 348 7.758980 CACACATATAGATCTGTCTTCATAGCC 59.241 40.741 5.18 0.00 35.87 3.93
348 349 7.093552 ACACATATAGATCTGTCTTCATAGCCC 60.094 40.741 5.18 0.00 35.87 5.19
349 350 6.382570 ACATATAGATCTGTCTTCATAGCCCC 59.617 42.308 5.18 0.00 35.87 5.80
350 351 3.051940 AGATCTGTCTTCATAGCCCCA 57.948 47.619 0.00 0.00 0.00 4.96
351 352 3.596101 AGATCTGTCTTCATAGCCCCAT 58.404 45.455 0.00 0.00 0.00 4.00
352 353 3.582208 AGATCTGTCTTCATAGCCCCATC 59.418 47.826 0.00 0.00 0.00 3.51
353 354 2.050144 TCTGTCTTCATAGCCCCATCC 58.950 52.381 0.00 0.00 0.00 3.51
354 355 2.053244 CTGTCTTCATAGCCCCATCCT 58.947 52.381 0.00 0.00 0.00 3.24
355 356 2.441001 CTGTCTTCATAGCCCCATCCTT 59.559 50.000 0.00 0.00 0.00 3.36
356 357 3.648067 CTGTCTTCATAGCCCCATCCTTA 59.352 47.826 0.00 0.00 0.00 2.69
357 358 3.648067 TGTCTTCATAGCCCCATCCTTAG 59.352 47.826 0.00 0.00 0.00 2.18
358 359 3.648545 GTCTTCATAGCCCCATCCTTAGT 59.351 47.826 0.00 0.00 0.00 2.24
359 360 3.904339 TCTTCATAGCCCCATCCTTAGTC 59.096 47.826 0.00 0.00 0.00 2.59
360 361 2.621070 TCATAGCCCCATCCTTAGTCC 58.379 52.381 0.00 0.00 0.00 3.85
361 362 2.182312 TCATAGCCCCATCCTTAGTCCT 59.818 50.000 0.00 0.00 0.00 3.85
362 363 2.103153 TAGCCCCATCCTTAGTCCTG 57.897 55.000 0.00 0.00 0.00 3.86
363 364 1.149401 GCCCCATCCTTAGTCCTGC 59.851 63.158 0.00 0.00 0.00 4.85
364 365 1.839894 CCCCATCCTTAGTCCTGCC 59.160 63.158 0.00 0.00 0.00 4.85
365 366 0.988145 CCCCATCCTTAGTCCTGCCA 60.988 60.000 0.00 0.00 0.00 4.92
366 367 1.143813 CCCATCCTTAGTCCTGCCAT 58.856 55.000 0.00 0.00 0.00 4.40
367 368 1.072965 CCCATCCTTAGTCCTGCCATC 59.927 57.143 0.00 0.00 0.00 3.51
368 369 2.053244 CCATCCTTAGTCCTGCCATCT 58.947 52.381 0.00 0.00 0.00 2.90
369 370 2.038295 CCATCCTTAGTCCTGCCATCTC 59.962 54.545 0.00 0.00 0.00 2.75
370 371 2.550277 TCCTTAGTCCTGCCATCTCA 57.450 50.000 0.00 0.00 0.00 3.27
371 372 2.392662 TCCTTAGTCCTGCCATCTCAG 58.607 52.381 0.00 0.00 0.00 3.35
412 413 2.520982 GGCCCGGCCCTAAAATCC 60.521 66.667 18.83 0.00 44.06 3.01
413 414 2.277404 GCCCGGCCCTAAAATCCA 59.723 61.111 0.00 0.00 0.00 3.41
414 415 1.828224 GCCCGGCCCTAAAATCCAG 60.828 63.158 0.00 0.00 0.00 3.86
415 416 1.152756 CCCGGCCCTAAAATCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
421 422 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
422 423 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
423 424 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
466 467 2.732289 GCTTGGGCCTGAGTTTTGA 58.268 52.632 4.53 0.00 0.00 2.69
467 468 0.600057 GCTTGGGCCTGAGTTTTGAG 59.400 55.000 4.53 0.00 0.00 3.02
468 469 0.600057 CTTGGGCCTGAGTTTTGAGC 59.400 55.000 4.53 0.00 0.00 4.26
469 470 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
470 471 3.686760 GGCCTGAGTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
471 472 1.228552 GGCCTGAGTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
472 473 0.613012 GGCCTGAGTTTTGAGCCCAT 60.613 55.000 0.00 0.00 37.66 4.00
473 474 0.813821 GCCTGAGTTTTGAGCCCATC 59.186 55.000 0.00 0.00 0.00 3.51
474 475 1.887956 GCCTGAGTTTTGAGCCCATCA 60.888 52.381 0.00 0.00 35.62 3.07
475 476 2.089980 CCTGAGTTTTGAGCCCATCAG 58.910 52.381 0.00 0.00 39.68 2.90
476 477 1.471684 CTGAGTTTTGAGCCCATCAGC 59.528 52.381 0.00 0.00 39.68 4.26
477 478 1.202915 TGAGTTTTGAGCCCATCAGCA 60.203 47.619 0.00 0.00 39.68 4.41
478 479 1.471684 GAGTTTTGAGCCCATCAGCAG 59.528 52.381 0.00 0.00 39.68 4.24
479 480 0.529378 GTTTTGAGCCCATCAGCAGG 59.471 55.000 0.00 0.00 39.68 4.85
485 486 4.517934 CCCATCAGCAGGGCCTGG 62.518 72.222 33.43 18.77 39.96 4.45
486 487 3.414193 CCATCAGCAGGGCCTGGA 61.414 66.667 33.43 23.33 33.64 3.86
487 488 2.124403 CATCAGCAGGGCCTGGAC 60.124 66.667 33.43 18.62 33.64 4.02
488 489 3.790437 ATCAGCAGGGCCTGGACG 61.790 66.667 33.43 10.11 33.64 4.79
499 500 4.351054 CTGGACGGGCTTGGGCTT 62.351 66.667 0.00 0.00 38.73 4.35
500 501 4.659172 TGGACGGGCTTGGGCTTG 62.659 66.667 0.00 0.00 38.73 4.01
505 506 2.043046 GGGCTTGGGCTTGGCATA 60.043 61.111 0.00 0.00 38.73 3.14
506 507 1.458209 GGGCTTGGGCTTGGCATAT 60.458 57.895 0.00 0.00 38.73 1.78
507 508 1.050421 GGGCTTGGGCTTGGCATATT 61.050 55.000 0.00 0.00 38.73 1.28
508 509 0.105408 GGCTTGGGCTTGGCATATTG 59.895 55.000 0.00 0.00 38.73 1.90
509 510 0.105408 GCTTGGGCTTGGCATATTGG 59.895 55.000 0.00 0.00 35.22 3.16
510 511 0.105408 CTTGGGCTTGGCATATTGGC 59.895 55.000 0.00 0.00 44.03 4.52
523 524 6.160576 GGCATATTGGCATTTTAAGGAAGA 57.839 37.500 0.00 0.00 43.14 2.87
524 525 6.218746 GGCATATTGGCATTTTAAGGAAGAG 58.781 40.000 0.00 0.00 43.14 2.85
525 526 6.218746 GCATATTGGCATTTTAAGGAAGAGG 58.781 40.000 0.00 0.00 0.00 3.69
526 527 6.040842 GCATATTGGCATTTTAAGGAAGAGGA 59.959 38.462 0.00 0.00 0.00 3.71
527 528 5.921962 ATTGGCATTTTAAGGAAGAGGAC 57.078 39.130 0.00 0.00 0.00 3.85
528 529 3.697166 TGGCATTTTAAGGAAGAGGACC 58.303 45.455 0.00 0.00 0.00 4.46
529 530 2.683362 GGCATTTTAAGGAAGAGGACCG 59.317 50.000 0.00 0.00 0.00 4.79
530 531 2.683362 GCATTTTAAGGAAGAGGACCGG 59.317 50.000 0.00 0.00 0.00 5.28
531 532 2.484742 TTTTAAGGAAGAGGACCGGC 57.515 50.000 0.00 0.00 0.00 6.13
532 533 0.616891 TTTAAGGAAGAGGACCGGCC 59.383 55.000 0.00 3.58 0.00 6.13
533 534 1.269703 TTAAGGAAGAGGACCGGCCC 61.270 60.000 0.00 0.00 37.37 5.80
534 535 2.465010 TAAGGAAGAGGACCGGCCCA 62.465 60.000 10.37 0.00 37.37 5.36
535 536 4.097361 GGAAGAGGACCGGCCCAC 62.097 72.222 10.37 1.77 37.37 4.61
536 537 4.452733 GAAGAGGACCGGCCCACG 62.453 72.222 10.37 0.00 43.80 4.94
563 564 3.596362 CCCTAAGGGCTTTTCAGGG 57.404 57.895 3.08 3.08 40.10 4.45
564 565 0.704664 CCCTAAGGGCTTTTCAGGGT 59.295 55.000 8.67 0.00 41.00 4.34
565 566 1.077169 CCCTAAGGGCTTTTCAGGGTT 59.923 52.381 8.67 0.00 41.00 4.11
566 567 2.492753 CCCTAAGGGCTTTTCAGGGTTT 60.493 50.000 8.67 0.00 41.00 3.27
567 568 3.239449 CCTAAGGGCTTTTCAGGGTTTT 58.761 45.455 0.00 0.00 0.00 2.43
568 569 3.646162 CCTAAGGGCTTTTCAGGGTTTTT 59.354 43.478 0.00 0.00 0.00 1.94
583 584 3.274601 TTTTTACCAGATGGGCCGG 57.725 52.632 0.00 0.00 42.05 6.13
584 585 0.323908 TTTTTACCAGATGGGCCGGG 60.324 55.000 2.18 0.00 42.05 5.73
585 586 2.847366 TTTTACCAGATGGGCCGGGC 62.847 60.000 22.00 22.00 42.05 6.13
586 587 4.815973 TACCAGATGGGCCGGGCT 62.816 66.667 28.80 9.11 42.05 5.19
597 598 2.600173 CCGGGCTTGGGCTTGAAA 60.600 61.111 0.00 0.00 38.73 2.69
598 599 2.206536 CCGGGCTTGGGCTTGAAAA 61.207 57.895 0.00 0.00 38.73 2.29
611 612 2.985896 CTTGAAAAGTAGGCCCGATGA 58.014 47.619 0.00 0.00 39.70 2.92
612 613 3.343617 CTTGAAAAGTAGGCCCGATGAA 58.656 45.455 0.00 0.00 39.70 2.57
613 614 3.426787 TGAAAAGTAGGCCCGATGAAA 57.573 42.857 0.00 0.00 0.00 2.69
614 615 3.343617 TGAAAAGTAGGCCCGATGAAAG 58.656 45.455 0.00 0.00 0.00 2.62
615 616 2.420058 AAAGTAGGCCCGATGAAAGG 57.580 50.000 0.00 0.00 0.00 3.11
621 622 2.124151 CCCGATGAAAGGGCCTGG 60.124 66.667 6.92 1.76 42.77 4.45
622 623 2.124151 CCGATGAAAGGGCCTGGG 60.124 66.667 6.92 0.00 0.00 4.45
623 624 2.830370 CGATGAAAGGGCCTGGGC 60.830 66.667 6.92 12.58 41.06 5.36
633 634 3.686760 GCCTGGGCCTCAGTTTTC 58.313 61.111 16.96 3.57 41.83 2.29
634 635 1.075659 GCCTGGGCCTCAGTTTTCT 59.924 57.895 16.96 0.00 41.83 2.52
635 636 1.246737 GCCTGGGCCTCAGTTTTCTG 61.247 60.000 16.96 5.05 41.83 3.02
636 637 1.246737 CCTGGGCCTCAGTTTTCTGC 61.247 60.000 16.96 0.00 46.59 4.26
637 638 1.228552 TGGGCCTCAGTTTTCTGCC 60.229 57.895 4.53 0.00 46.59 4.85
638 639 1.228552 GGGCCTCAGTTTTCTGCCA 60.229 57.895 0.84 0.00 46.59 4.92
639 640 0.613012 GGGCCTCAGTTTTCTGCCAT 60.613 55.000 0.84 0.00 46.59 4.40
640 641 0.529378 GGCCTCAGTTTTCTGCCATG 59.471 55.000 0.00 0.00 46.59 3.66
641 642 0.529378 GCCTCAGTTTTCTGCCATGG 59.471 55.000 7.63 7.63 46.59 3.66
642 643 1.180029 CCTCAGTTTTCTGCCATGGG 58.820 55.000 15.13 0.00 46.59 4.00
663 664 3.349879 TTTTTAGGCCCGGTCCAAG 57.650 52.632 3.37 0.00 0.00 3.61
664 665 0.896479 TTTTTAGGCCCGGTCCAAGC 60.896 55.000 3.37 0.00 0.00 4.01
719 720 1.165907 CCTGCAGTGAACGAAGGCAA 61.166 55.000 13.81 0.00 33.58 4.52
809 810 1.810532 GTTGTCTCTCGATCCCGCT 59.189 57.895 0.00 0.00 35.37 5.52
857 858 0.249405 CTGCTGCCTCGAGATCCTTC 60.249 60.000 15.71 0.00 0.00 3.46
862 863 2.102084 CTGCCTCGAGATCCTTCATCAA 59.898 50.000 15.71 0.00 33.29 2.57
870 871 4.501058 CGAGATCCTTCATCAATGAGCAGA 60.501 45.833 0.00 0.00 38.19 4.26
871 872 4.963373 AGATCCTTCATCAATGAGCAGAG 58.037 43.478 0.00 0.00 38.19 3.35
872 873 2.915349 TCCTTCATCAATGAGCAGAGC 58.085 47.619 0.00 0.00 38.19 4.09
873 874 2.237893 TCCTTCATCAATGAGCAGAGCA 59.762 45.455 0.00 0.00 38.19 4.26
874 875 2.614520 CCTTCATCAATGAGCAGAGCAG 59.385 50.000 0.00 0.00 38.19 4.24
927 929 2.827322 TCAGCTAGTGCGTACCCTAAAA 59.173 45.455 0.00 0.00 45.42 1.52
931 933 3.370061 GCTAGTGCGTACCCTAAAACTTG 59.630 47.826 0.00 0.00 0.00 3.16
943 945 4.324254 CCCTAAAACTTGGATCACAGCCTA 60.324 45.833 0.00 0.00 0.00 3.93
948 950 3.177228 ACTTGGATCACAGCCTACTCTT 58.823 45.455 0.00 0.00 0.00 2.85
962 964 4.036852 GCCTACTCTTGTTTTCAAAGCACT 59.963 41.667 0.00 0.00 39.47 4.40
1004 1006 4.341099 CGTAAGACAGGAACGTAGATGAC 58.659 47.826 0.00 0.00 43.02 3.06
1031 1033 1.280421 GGGAAGAGAGATGGTGCAAGT 59.720 52.381 0.00 0.00 0.00 3.16
1039 1041 1.303317 ATGGTGCAAGTTCCCCGTC 60.303 57.895 0.00 0.00 0.00 4.79
1154 1156 5.664294 TTCATTTCTAGTGCATGGCATTT 57.336 34.783 0.00 0.00 41.91 2.32
1188 1190 0.819259 TTAATCATGCCGGGAGCTGC 60.819 55.000 2.18 0.00 44.23 5.25
1197 1199 1.883084 CGGGAGCTGCGTTATGTCC 60.883 63.158 0.00 0.00 0.00 4.02
1313 1315 3.039988 CGATACCGCGATGGGAGT 58.960 61.111 8.23 0.00 44.64 3.85
1422 1424 4.796231 CAACGAGGCCTCCGTCCG 62.796 72.222 27.20 17.88 39.57 4.79
1636 1644 3.085296 ACCGTCCATAACCCCGGG 61.085 66.667 15.80 15.80 44.57 5.73
1702 1720 2.208349 AAGACCCTCCTGCCACCT 59.792 61.111 0.00 0.00 0.00 4.00
1773 1799 6.653183 TCAGTATAGCTACGTACGTGATTTC 58.347 40.000 30.25 13.77 32.82 2.17
1777 1803 3.756069 AGCTACGTACGTGATTTCTGTC 58.244 45.455 30.25 8.45 0.00 3.51
1812 1838 9.813446 CCCAAGATAACTAACGAAATACTTACT 57.187 33.333 0.00 0.00 0.00 2.24
2032 2058 3.357079 GTGCAGCTGGTGTTCGGG 61.357 66.667 17.12 0.00 0.00 5.14
2287 2328 3.735208 CGAGCTACAACATGAAGTCCGAT 60.735 47.826 0.00 0.00 0.00 4.18
2417 2467 3.412981 TGGTTTGTGACACGAACAATG 57.587 42.857 30.72 0.00 42.82 2.82
2418 2468 2.098280 TGGTTTGTGACACGAACAATGG 59.902 45.455 30.72 0.00 42.82 3.16
2436 2505 1.273438 TGGGTAACTACAGAGGGGTCC 60.273 57.143 0.00 0.00 0.00 4.46
2541 2610 7.571080 TTAAGTATTCTTTTCACGTTTGGGT 57.429 32.000 0.00 0.00 35.36 4.51
2544 2613 0.741915 TCTTTTCACGTTTGGGTGGC 59.258 50.000 0.00 0.00 38.46 5.01
2545 2614 0.457851 CTTTTCACGTTTGGGTGGCA 59.542 50.000 0.00 0.00 38.46 4.92
2547 2616 0.173708 TTTCACGTTTGGGTGGCAAC 59.826 50.000 0.00 0.00 38.46 4.17
2563 2787 2.415512 GGCAACTAGGCAAGTAACTTCG 59.584 50.000 0.00 0.00 43.51 3.79
2572 2796 5.741011 AGGCAAGTAACTTCGGAATGATAA 58.259 37.500 0.00 0.00 0.00 1.75
2582 2806 3.680490 TCGGAATGATAAAACACCAGCA 58.320 40.909 0.00 0.00 0.00 4.41
2583 2807 4.075682 TCGGAATGATAAAACACCAGCAA 58.924 39.130 0.00 0.00 0.00 3.91
2584 2808 4.155826 TCGGAATGATAAAACACCAGCAAG 59.844 41.667 0.00 0.00 0.00 4.01
2585 2809 4.082787 CGGAATGATAAAACACCAGCAAGT 60.083 41.667 0.00 0.00 0.00 3.16
2586 2810 5.564651 CGGAATGATAAAACACCAGCAAGTT 60.565 40.000 0.00 0.00 0.00 2.66
2587 2811 6.223120 GGAATGATAAAACACCAGCAAGTTT 58.777 36.000 0.00 0.00 39.46 2.66
2588 2812 6.705825 GGAATGATAAAACACCAGCAAGTTTT 59.294 34.615 8.15 8.15 46.30 2.43
2589 2813 7.226523 GGAATGATAAAACACCAGCAAGTTTTT 59.773 33.333 8.34 8.19 43.26 1.94
2616 2840 8.669946 TTTGTTTTGAAAATGAGAATTACCCC 57.330 30.769 0.00 0.00 0.00 4.95
2617 2841 6.764379 TGTTTTGAAAATGAGAATTACCCCC 58.236 36.000 0.00 0.00 0.00 5.40
2618 2842 6.327626 TGTTTTGAAAATGAGAATTACCCCCA 59.672 34.615 0.00 0.00 0.00 4.96
2619 2843 6.603940 TTTGAAAATGAGAATTACCCCCAG 57.396 37.500 0.00 0.00 0.00 4.45
2620 2844 5.269554 TGAAAATGAGAATTACCCCCAGT 57.730 39.130 0.00 0.00 0.00 4.00
2621 2845 5.650283 TGAAAATGAGAATTACCCCCAGTT 58.350 37.500 0.00 0.00 0.00 3.16
2622 2846 6.081356 TGAAAATGAGAATTACCCCCAGTTT 58.919 36.000 0.00 0.00 0.00 2.66
2623 2847 6.210584 TGAAAATGAGAATTACCCCCAGTTTC 59.789 38.462 0.00 0.00 40.22 2.78
2624 2848 5.536497 AATGAGAATTACCCCCAGTTTCT 57.464 39.130 0.00 0.00 29.87 2.52
2625 2849 4.301072 TGAGAATTACCCCCAGTTTCTG 57.699 45.455 0.00 0.00 27.81 3.02
2626 2850 3.017442 GAGAATTACCCCCAGTTTCTGC 58.983 50.000 0.00 0.00 27.81 4.26
2627 2851 2.378547 AGAATTACCCCCAGTTTCTGCA 59.621 45.455 0.00 0.00 26.80 4.41
2628 2852 2.990740 ATTACCCCCAGTTTCTGCAA 57.009 45.000 0.00 0.00 0.00 4.08
2629 2853 2.990740 TTACCCCCAGTTTCTGCAAT 57.009 45.000 0.00 0.00 0.00 3.56
2630 2854 2.507407 TACCCCCAGTTTCTGCAATC 57.493 50.000 0.00 0.00 0.00 2.67
2631 2855 0.482446 ACCCCCAGTTTCTGCAATCA 59.518 50.000 0.00 0.00 0.00 2.57
2632 2856 1.180029 CCCCCAGTTTCTGCAATCAG 58.820 55.000 0.00 0.00 41.67 2.90
2633 2857 0.529378 CCCCAGTTTCTGCAATCAGC 59.471 55.000 0.00 0.00 45.96 4.26
2658 2882 4.335400 TGCAAGACACATAGTTCTGTCA 57.665 40.909 0.00 0.00 39.49 3.58
2659 2883 4.898320 TGCAAGACACATAGTTCTGTCAT 58.102 39.130 0.00 0.00 39.49 3.06
2818 3076 1.937191 GGGAAAGAAATTGCCTCCCA 58.063 50.000 14.20 0.00 45.56 4.37
2819 3077 2.256306 GGGAAAGAAATTGCCTCCCAA 58.744 47.619 14.20 0.00 45.56 4.12
2820 3078 2.028112 GGGAAAGAAATTGCCTCCCAAC 60.028 50.000 14.20 0.00 45.56 3.77
2821 3079 2.352715 GGAAAGAAATTGCCTCCCAACG 60.353 50.000 0.00 0.00 35.99 4.10
2833 3091 3.230245 CCAACGGCAGCCCCAAAA 61.230 61.111 5.63 0.00 0.00 2.44
2834 3092 2.339712 CAACGGCAGCCCCAAAAG 59.660 61.111 5.63 0.00 0.00 2.27
2835 3093 3.615709 AACGGCAGCCCCAAAAGC 61.616 61.111 5.63 0.00 0.00 3.51
2836 3094 4.912395 ACGGCAGCCCCAAAAGCA 62.912 61.111 5.63 0.00 0.00 3.91
2838 3096 2.601367 GGCAGCCCCAAAAGCAGA 60.601 61.111 0.00 0.00 0.00 4.26
2839 3097 2.643232 GGCAGCCCCAAAAGCAGAG 61.643 63.158 0.00 0.00 0.00 3.35
2842 3100 0.964358 CAGCCCCAAAAGCAGAGGAG 60.964 60.000 0.00 0.00 0.00 3.69
2844 3102 0.679321 GCCCCAAAAGCAGAGGAGAG 60.679 60.000 0.00 0.00 0.00 3.20
2845 3103 0.987294 CCCCAAAAGCAGAGGAGAGA 59.013 55.000 0.00 0.00 0.00 3.10
2846 3104 1.352352 CCCCAAAAGCAGAGGAGAGAA 59.648 52.381 0.00 0.00 0.00 2.87
2891 3174 3.402681 CCCTCCACACATCCCGCT 61.403 66.667 0.00 0.00 0.00 5.52
2897 3180 3.731728 ACACATCCCGCTGCCCAT 61.732 61.111 0.00 0.00 0.00 4.00
2900 3183 4.552365 CATCCCGCTGCCCATCGT 62.552 66.667 0.00 0.00 0.00 3.73
3013 6758 1.112315 AGGAGGAGGCGTATCAGCTG 61.112 60.000 7.63 7.63 37.29 4.24
3131 6974 4.194720 GGACATCTCCGTCGCGCT 62.195 66.667 5.56 0.00 36.73 5.92
3244 7087 4.802051 TTCAGCTCCGGCCATGGC 62.802 66.667 29.47 29.47 39.73 4.40
3246 7089 4.809496 CAGCTCCGGCCATGGCTT 62.809 66.667 34.70 11.92 41.60 4.35
3273 7116 1.377987 GGGCGGCAACAAGGTATGA 60.378 57.895 12.47 0.00 0.00 2.15
3310 7153 0.447801 AGTGATTGATCGTTTGCCGC 59.552 50.000 0.00 0.00 36.19 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.749839 GTTGCATGCCCTACCGCA 60.750 61.111 16.68 0.00 44.35 5.69
5 6 3.518068 GGTTGCATGCCCTACCGC 61.518 66.667 16.68 0.00 0.00 5.68
6 7 2.828549 GGGTTGCATGCCCTACCG 60.829 66.667 16.68 0.00 42.81 4.02
11 12 2.828549 CGGTAGGGTTGCATGCCC 60.829 66.667 16.68 16.67 46.43 5.36
12 13 3.518068 GCGGTAGGGTTGCATGCC 61.518 66.667 16.68 0.00 0.00 4.40
13 14 3.518068 GGCGGTAGGGTTGCATGC 61.518 66.667 11.82 11.82 0.00 4.06
14 15 2.045438 TGGCGGTAGGGTTGCATG 60.045 61.111 0.00 0.00 0.00 4.06
15 16 2.272146 CTGGCGGTAGGGTTGCAT 59.728 61.111 0.00 0.00 0.00 3.96
16 17 4.028490 CCTGGCGGTAGGGTTGCA 62.028 66.667 0.00 0.00 34.06 4.08
22 23 2.687566 AAGGTCCCTGGCGGTAGG 60.688 66.667 0.00 0.00 37.59 3.18
23 24 2.584608 CAAGGTCCCTGGCGGTAG 59.415 66.667 0.00 0.00 0.00 3.18
24 25 3.006728 CCAAGGTCCCTGGCGGTA 61.007 66.667 0.00 0.00 0.00 4.02
37 38 2.480845 GTATAACAGCCTACCGCCAAG 58.519 52.381 0.00 0.00 38.78 3.61
38 39 1.139455 GGTATAACAGCCTACCGCCAA 59.861 52.381 0.00 0.00 38.78 4.52
39 40 0.754472 GGTATAACAGCCTACCGCCA 59.246 55.000 0.00 0.00 38.78 5.69
40 41 0.034476 GGGTATAACAGCCTACCGCC 59.966 60.000 0.00 0.00 41.95 6.13
41 42 3.601277 GGGTATAACAGCCTACCGC 57.399 57.895 0.00 0.00 41.95 5.68
47 48 0.034476 GGCGGTAGGGTATAACAGCC 59.966 60.000 1.03 1.03 46.91 4.85
48 49 0.754472 TGGCGGTAGGGTATAACAGC 59.246 55.000 0.00 0.00 36.28 4.40
49 50 2.631062 TCATGGCGGTAGGGTATAACAG 59.369 50.000 0.00 0.00 0.00 3.16
50 51 2.680251 TCATGGCGGTAGGGTATAACA 58.320 47.619 0.00 0.00 0.00 2.41
51 52 3.396560 GTTCATGGCGGTAGGGTATAAC 58.603 50.000 0.00 0.00 0.00 1.89
52 53 2.369532 GGTTCATGGCGGTAGGGTATAA 59.630 50.000 0.00 0.00 0.00 0.98
53 54 1.972795 GGTTCATGGCGGTAGGGTATA 59.027 52.381 0.00 0.00 0.00 1.47
54 55 0.763035 GGTTCATGGCGGTAGGGTAT 59.237 55.000 0.00 0.00 0.00 2.73
55 56 1.339644 GGGTTCATGGCGGTAGGGTA 61.340 60.000 0.00 0.00 0.00 3.69
56 57 2.676265 GGGTTCATGGCGGTAGGGT 61.676 63.158 0.00 0.00 0.00 4.34
57 58 2.192175 GGGTTCATGGCGGTAGGG 59.808 66.667 0.00 0.00 0.00 3.53
58 59 1.153168 CAGGGTTCATGGCGGTAGG 60.153 63.158 0.00 0.00 0.00 3.18
59 60 1.819632 GCAGGGTTCATGGCGGTAG 60.820 63.158 0.00 0.00 0.00 3.18
60 61 2.270850 GCAGGGTTCATGGCGGTA 59.729 61.111 0.00 0.00 0.00 4.02
61 62 4.740822 GGCAGGGTTCATGGCGGT 62.741 66.667 0.00 0.00 33.23 5.68
62 63 4.738998 TGGCAGGGTTCATGGCGG 62.739 66.667 0.00 0.00 45.63 6.13
63 64 2.440796 ATGGCAGGGTTCATGGCG 60.441 61.111 0.00 0.00 45.63 5.69
64 65 2.129785 GGATGGCAGGGTTCATGGC 61.130 63.158 0.00 0.00 43.16 4.40
65 66 0.754217 CAGGATGGCAGGGTTCATGG 60.754 60.000 0.00 0.00 0.00 3.66
66 67 2.803203 CAGGATGGCAGGGTTCATG 58.197 57.895 0.00 0.00 0.00 3.07
78 79 0.734889 CTTTTGCTACCGCCAGGATG 59.265 55.000 0.00 0.00 41.02 3.51
79 80 0.394352 CCTTTTGCTACCGCCAGGAT 60.394 55.000 0.00 0.00 41.02 3.24
80 81 1.002624 CCTTTTGCTACCGCCAGGA 60.003 57.895 0.00 0.00 41.02 3.86
81 82 2.046285 CCCTTTTGCTACCGCCAGG 61.046 63.158 0.00 0.00 45.13 4.45
82 83 1.303317 ACCCTTTTGCTACCGCCAG 60.303 57.895 0.00 0.00 34.43 4.85
83 84 1.302993 GACCCTTTTGCTACCGCCA 60.303 57.895 0.00 0.00 34.43 5.69
84 85 0.891904 TTGACCCTTTTGCTACCGCC 60.892 55.000 0.00 0.00 34.43 6.13
85 86 0.955905 TTTGACCCTTTTGCTACCGC 59.044 50.000 0.00 0.00 0.00 5.68
86 87 2.163613 GGATTTGACCCTTTTGCTACCG 59.836 50.000 0.00 0.00 0.00 4.02
87 88 3.161866 TGGATTTGACCCTTTTGCTACC 58.838 45.455 0.00 0.00 0.00 3.18
88 89 4.079253 TCTGGATTTGACCCTTTTGCTAC 58.921 43.478 0.00 0.00 0.00 3.58
89 90 4.380843 TCTGGATTTGACCCTTTTGCTA 57.619 40.909 0.00 0.00 0.00 3.49
90 91 3.243359 TCTGGATTTGACCCTTTTGCT 57.757 42.857 0.00 0.00 0.00 3.91
91 92 4.335400 TTTCTGGATTTGACCCTTTTGC 57.665 40.909 0.00 0.00 0.00 3.68
120 121 7.560368 AGTAATTGAAATCTGACCCTAGTCTG 58.440 38.462 0.00 0.00 43.91 3.51
121 122 7.741554 AGTAATTGAAATCTGACCCTAGTCT 57.258 36.000 0.00 0.00 43.91 3.24
122 123 8.794335 AAAGTAATTGAAATCTGACCCTAGTC 57.206 34.615 0.00 0.00 43.83 2.59
123 124 8.383175 TGAAAGTAATTGAAATCTGACCCTAGT 58.617 33.333 0.00 0.00 0.00 2.57
124 125 8.792830 TGAAAGTAATTGAAATCTGACCCTAG 57.207 34.615 0.00 0.00 0.00 3.02
125 126 9.581289 TTTGAAAGTAATTGAAATCTGACCCTA 57.419 29.630 0.00 0.00 0.00 3.53
126 127 8.477419 TTTGAAAGTAATTGAAATCTGACCCT 57.523 30.769 0.00 0.00 0.00 4.34
127 128 9.541143 TTTTTGAAAGTAATTGAAATCTGACCC 57.459 29.630 0.00 0.00 0.00 4.46
150 151 8.724229 GCTAAATTTCATGCTTTGATCCTTTTT 58.276 29.630 0.00 0.00 33.34 1.94
151 152 7.335171 GGCTAAATTTCATGCTTTGATCCTTTT 59.665 33.333 0.00 0.00 33.34 2.27
152 153 6.820152 GGCTAAATTTCATGCTTTGATCCTTT 59.180 34.615 0.00 0.00 33.34 3.11
153 154 6.343703 GGCTAAATTTCATGCTTTGATCCTT 58.656 36.000 0.00 0.00 33.34 3.36
154 155 5.450965 CGGCTAAATTTCATGCTTTGATCCT 60.451 40.000 0.00 0.00 33.34 3.24
155 156 4.741676 CGGCTAAATTTCATGCTTTGATCC 59.258 41.667 0.00 0.00 33.34 3.36
156 157 4.207841 GCGGCTAAATTTCATGCTTTGATC 59.792 41.667 0.00 0.00 33.34 2.92
157 158 4.114794 GCGGCTAAATTTCATGCTTTGAT 58.885 39.130 0.00 0.00 33.34 2.57
158 159 3.056962 TGCGGCTAAATTTCATGCTTTGA 60.057 39.130 0.00 0.00 0.00 2.69
159 160 3.252400 TGCGGCTAAATTTCATGCTTTG 58.748 40.909 0.00 0.00 0.00 2.77
160 161 3.591196 TGCGGCTAAATTTCATGCTTT 57.409 38.095 0.00 0.00 0.00 3.51
161 162 3.491447 GGATGCGGCTAAATTTCATGCTT 60.491 43.478 0.00 0.00 0.00 3.91
162 163 2.035066 GGATGCGGCTAAATTTCATGCT 59.965 45.455 0.00 0.00 0.00 3.79
163 164 2.397549 GGATGCGGCTAAATTTCATGC 58.602 47.619 0.00 0.00 0.00 4.06
164 165 2.605338 CCGGATGCGGCTAAATTTCATG 60.605 50.000 14.38 0.00 0.00 3.07
165 166 1.608590 CCGGATGCGGCTAAATTTCAT 59.391 47.619 14.38 0.00 0.00 2.57
166 167 1.021202 CCGGATGCGGCTAAATTTCA 58.979 50.000 14.38 0.00 0.00 2.69
167 168 1.305201 TCCGGATGCGGCTAAATTTC 58.695 50.000 22.35 0.00 0.00 2.17
168 169 1.981256 ATCCGGATGCGGCTAAATTT 58.019 45.000 22.35 0.00 0.00 1.82
169 170 1.880027 GAATCCGGATGCGGCTAAATT 59.120 47.619 22.35 15.19 0.00 1.82
170 171 1.072331 AGAATCCGGATGCGGCTAAAT 59.928 47.619 22.35 6.23 0.00 1.40
171 172 0.468226 AGAATCCGGATGCGGCTAAA 59.532 50.000 22.35 3.60 0.00 1.85
172 173 0.033504 GAGAATCCGGATGCGGCTAA 59.966 55.000 22.35 4.03 0.00 3.09
173 174 1.666011 GAGAATCCGGATGCGGCTA 59.334 57.895 22.35 4.91 0.00 3.93
174 175 2.423446 GAGAATCCGGATGCGGCT 59.577 61.111 22.35 12.64 0.00 5.52
185 186 2.028020 ACTCAAACACCCGAGGAGAATC 60.028 50.000 0.00 0.00 33.36 2.52
186 187 1.978580 ACTCAAACACCCGAGGAGAAT 59.021 47.619 0.00 0.00 33.36 2.40
187 188 1.070134 CACTCAAACACCCGAGGAGAA 59.930 52.381 0.00 0.00 33.36 2.87
188 189 0.679505 CACTCAAACACCCGAGGAGA 59.320 55.000 0.00 0.00 33.36 3.71
189 190 0.679505 TCACTCAAACACCCGAGGAG 59.320 55.000 0.00 0.00 33.36 3.69
190 191 0.391597 GTCACTCAAACACCCGAGGA 59.608 55.000 0.00 0.00 33.36 3.71
191 192 0.602905 GGTCACTCAAACACCCGAGG 60.603 60.000 0.00 0.00 33.36 4.63
192 193 0.944311 CGGTCACTCAAACACCCGAG 60.944 60.000 0.00 0.00 37.66 4.63
193 194 1.068417 CGGTCACTCAAACACCCGA 59.932 57.895 0.00 0.00 37.66 5.14
194 195 1.959226 CCGGTCACTCAAACACCCG 60.959 63.158 0.00 0.00 35.32 5.28
195 196 0.036306 ATCCGGTCACTCAAACACCC 59.964 55.000 0.00 0.00 0.00 4.61
196 197 1.892209 AATCCGGTCACTCAAACACC 58.108 50.000 0.00 0.00 0.00 4.16
197 198 2.604614 GCAAATCCGGTCACTCAAACAC 60.605 50.000 0.00 0.00 0.00 3.32
198 199 1.606668 GCAAATCCGGTCACTCAAACA 59.393 47.619 0.00 0.00 0.00 2.83
199 200 1.068541 GGCAAATCCGGTCACTCAAAC 60.069 52.381 0.00 0.00 0.00 2.93
200 201 1.243902 GGCAAATCCGGTCACTCAAA 58.756 50.000 0.00 0.00 0.00 2.69
201 202 0.109532 TGGCAAATCCGGTCACTCAA 59.890 50.000 0.00 0.00 37.80 3.02
202 203 0.321564 CTGGCAAATCCGGTCACTCA 60.322 55.000 0.00 0.00 36.43 3.41
203 204 0.036388 TCTGGCAAATCCGGTCACTC 60.036 55.000 0.00 0.00 42.13 3.51
204 205 0.620556 ATCTGGCAAATCCGGTCACT 59.379 50.000 0.00 0.00 42.13 3.41
205 206 1.017387 GATCTGGCAAATCCGGTCAC 58.983 55.000 0.00 0.00 42.13 3.67
206 207 0.107214 GGATCTGGCAAATCCGGTCA 60.107 55.000 3.66 0.00 42.13 4.02
207 208 2.707902 GGATCTGGCAAATCCGGTC 58.292 57.895 3.66 0.00 42.13 4.79
208 209 4.986467 GGATCTGGCAAATCCGGT 57.014 55.556 3.66 0.00 42.13 5.28
211 212 1.303309 CACTCGGATCTGGCAAATCC 58.697 55.000 9.92 9.92 39.51 3.01
212 213 2.029838 ACACTCGGATCTGGCAAATC 57.970 50.000 0.62 0.00 0.00 2.17
213 214 2.766263 TCTACACTCGGATCTGGCAAAT 59.234 45.455 0.62 0.00 0.00 2.32
214 215 2.176045 TCTACACTCGGATCTGGCAAA 58.824 47.619 0.62 0.00 0.00 3.68
215 216 1.847328 TCTACACTCGGATCTGGCAA 58.153 50.000 0.62 0.00 0.00 4.52
216 217 1.683385 CATCTACACTCGGATCTGGCA 59.317 52.381 0.62 0.00 0.00 4.92
217 218 1.604185 GCATCTACACTCGGATCTGGC 60.604 57.143 0.62 0.00 0.00 4.85
218 219 1.959985 AGCATCTACACTCGGATCTGG 59.040 52.381 0.62 0.00 0.00 3.86
219 220 3.281341 GAGCATCTACACTCGGATCTG 57.719 52.381 0.00 0.00 0.00 2.90
228 229 6.810407 TGCGATGGCTTAGAGCATCTACAC 62.810 50.000 0.15 0.00 44.75 2.90
229 230 4.809614 TGCGATGGCTTAGAGCATCTACA 61.810 47.826 0.15 0.00 44.75 2.74
230 231 2.288457 TGCGATGGCTTAGAGCATCTAC 60.288 50.000 0.15 0.00 44.75 2.59
231 232 1.963515 TGCGATGGCTTAGAGCATCTA 59.036 47.619 0.15 0.00 44.75 1.98
232 233 0.755079 TGCGATGGCTTAGAGCATCT 59.245 50.000 0.15 0.00 44.75 2.90
233 234 0.864455 GTGCGATGGCTTAGAGCATC 59.136 55.000 0.15 0.00 44.75 3.91
234 235 0.178767 TGTGCGATGGCTTAGAGCAT 59.821 50.000 0.15 0.00 44.75 3.79
235 236 0.740868 GTGTGCGATGGCTTAGAGCA 60.741 55.000 0.15 0.00 44.75 4.26
236 237 1.432270 GGTGTGCGATGGCTTAGAGC 61.432 60.000 0.15 0.00 41.46 4.09
237 238 0.811616 GGGTGTGCGATGGCTTAGAG 60.812 60.000 0.15 0.00 40.82 2.43
238 239 1.220749 GGGTGTGCGATGGCTTAGA 59.779 57.895 0.15 0.00 40.82 2.10
239 240 0.464373 ATGGGTGTGCGATGGCTTAG 60.464 55.000 0.15 0.00 40.82 2.18
240 241 0.463654 GATGGGTGTGCGATGGCTTA 60.464 55.000 0.15 0.00 40.82 3.09
241 242 1.750399 GATGGGTGTGCGATGGCTT 60.750 57.895 0.15 0.00 40.82 4.35
242 243 2.124570 GATGGGTGTGCGATGGCT 60.125 61.111 0.15 0.00 40.82 4.75
243 244 3.576356 CGATGGGTGTGCGATGGC 61.576 66.667 0.00 0.00 40.52 4.40
244 245 3.576356 GCGATGGGTGTGCGATGG 61.576 66.667 0.00 0.00 0.00 3.51
245 246 2.819154 TGCGATGGGTGTGCGATG 60.819 61.111 0.00 0.00 0.00 3.84
246 247 2.819595 GTGCGATGGGTGTGCGAT 60.820 61.111 0.00 0.00 0.00 4.58
247 248 4.306967 TGTGCGATGGGTGTGCGA 62.307 61.111 0.00 0.00 0.00 5.10
248 249 4.088762 GTGTGCGATGGGTGTGCG 62.089 66.667 0.00 0.00 0.00 5.34
249 250 4.088762 CGTGTGCGATGGGTGTGC 62.089 66.667 0.00 0.00 41.33 4.57
250 251 1.781025 AAACGTGTGCGATGGGTGTG 61.781 55.000 0.00 0.00 42.00 3.82
251 252 1.503818 GAAACGTGTGCGATGGGTGT 61.504 55.000 0.00 0.00 42.00 4.16
252 253 1.206578 GAAACGTGTGCGATGGGTG 59.793 57.895 0.00 0.00 42.00 4.61
253 254 2.314647 CGAAACGTGTGCGATGGGT 61.315 57.895 0.00 0.00 42.00 4.51
254 255 2.474266 CGAAACGTGTGCGATGGG 59.526 61.111 0.00 0.00 42.00 4.00
255 256 2.170260 AAGCGAAACGTGTGCGATGG 62.170 55.000 8.83 0.00 42.00 3.51
256 257 0.384230 AAAGCGAAACGTGTGCGATG 60.384 50.000 8.83 0.00 42.00 3.84
257 258 0.384230 CAAAGCGAAACGTGTGCGAT 60.384 50.000 8.83 0.00 42.00 4.58
258 259 1.011684 CAAAGCGAAACGTGTGCGA 60.012 52.632 8.83 0.00 42.00 5.10
259 260 1.297304 ACAAAGCGAAACGTGTGCG 60.297 52.632 0.00 0.00 44.93 5.34
260 261 1.199852 CCACAAAGCGAAACGTGTGC 61.200 55.000 0.00 0.00 40.02 4.57
261 262 1.199852 GCCACAAAGCGAAACGTGTG 61.200 55.000 0.00 0.00 40.83 3.82
262 263 1.063488 GCCACAAAGCGAAACGTGT 59.937 52.632 0.00 0.00 0.00 4.49
263 264 0.524392 TTGCCACAAAGCGAAACGTG 60.524 50.000 0.00 0.00 34.65 4.49
264 265 0.171455 TTTGCCACAAAGCGAAACGT 59.829 45.000 0.00 0.00 33.13 3.99
265 266 0.570272 GTTTGCCACAAAGCGAAACG 59.430 50.000 0.00 0.00 37.88 3.60
266 267 1.587946 CTGTTTGCCACAAAGCGAAAC 59.412 47.619 0.00 0.00 37.88 2.78
267 268 1.203523 ACTGTTTGCCACAAAGCGAAA 59.796 42.857 0.00 0.00 37.88 3.46
268 269 0.814457 ACTGTTTGCCACAAAGCGAA 59.186 45.000 0.00 0.00 33.87 4.70
269 270 0.814457 AACTGTTTGCCACAAAGCGA 59.186 45.000 0.00 0.00 33.87 4.93
270 271 1.199624 GAACTGTTTGCCACAAAGCG 58.800 50.000 0.00 0.00 33.87 4.68
271 272 2.584492 AGAACTGTTTGCCACAAAGC 57.416 45.000 0.00 0.00 33.87 3.51
272 273 7.492344 AGAAAAATAGAACTGTTTGCCACAAAG 59.508 33.333 0.00 0.00 33.87 2.77
273 274 7.327214 AGAAAAATAGAACTGTTTGCCACAAA 58.673 30.769 0.00 0.00 33.87 2.83
274 275 6.872920 AGAAAAATAGAACTGTTTGCCACAA 58.127 32.000 0.00 0.00 33.87 3.33
275 276 6.463995 AGAAAAATAGAACTGTTTGCCACA 57.536 33.333 0.00 0.00 0.00 4.17
276 277 6.861572 GGTAGAAAAATAGAACTGTTTGCCAC 59.138 38.462 0.00 0.00 0.00 5.01
277 278 6.293735 CGGTAGAAAAATAGAACTGTTTGCCA 60.294 38.462 0.00 0.00 0.00 4.92
278 279 6.084277 CGGTAGAAAAATAGAACTGTTTGCC 58.916 40.000 0.00 0.00 0.00 4.52
279 280 6.577427 CACGGTAGAAAAATAGAACTGTTTGC 59.423 38.462 0.00 0.00 0.00 3.68
280 281 7.586300 CACACGGTAGAAAAATAGAACTGTTTG 59.414 37.037 0.00 0.00 0.00 2.93
281 282 7.281549 ACACACGGTAGAAAAATAGAACTGTTT 59.718 33.333 0.00 0.00 0.00 2.83
282 283 6.764560 ACACACGGTAGAAAAATAGAACTGTT 59.235 34.615 0.00 0.00 0.00 3.16
283 284 6.285990 ACACACGGTAGAAAAATAGAACTGT 58.714 36.000 0.00 0.00 0.00 3.55
284 285 6.780706 ACACACGGTAGAAAAATAGAACTG 57.219 37.500 0.00 0.00 0.00 3.16
285 286 8.932791 CATTACACACGGTAGAAAAATAGAACT 58.067 33.333 0.00 0.00 32.49 3.01
286 287 8.928733 TCATTACACACGGTAGAAAAATAGAAC 58.071 33.333 0.00 0.00 32.49 3.01
287 288 9.661563 ATCATTACACACGGTAGAAAAATAGAA 57.338 29.630 0.00 0.00 32.49 2.10
288 289 9.661563 AATCATTACACACGGTAGAAAAATAGA 57.338 29.630 0.00 0.00 32.49 1.98
289 290 9.916397 GAATCATTACACACGGTAGAAAAATAG 57.084 33.333 0.00 0.00 32.49 1.73
290 291 9.438228 TGAATCATTACACACGGTAGAAAAATA 57.562 29.630 0.00 0.00 32.49 1.40
291 292 8.330466 TGAATCATTACACACGGTAGAAAAAT 57.670 30.769 0.00 0.00 32.49 1.82
292 293 7.731882 TGAATCATTACACACGGTAGAAAAA 57.268 32.000 0.00 0.00 32.49 1.94
293 294 7.731882 TTGAATCATTACACACGGTAGAAAA 57.268 32.000 0.00 0.00 32.49 2.29
294 295 7.604545 TGATTGAATCATTACACACGGTAGAAA 59.395 33.333 3.29 0.00 33.59 2.52
295 296 7.064134 GTGATTGAATCATTACACACGGTAGAA 59.936 37.037 11.46 0.00 42.04 2.10
296 297 6.533723 GTGATTGAATCATTACACACGGTAGA 59.466 38.462 11.46 0.00 42.04 2.59
297 298 6.312672 TGTGATTGAATCATTACACACGGTAG 59.687 38.462 11.46 0.00 42.04 3.18
298 299 6.091577 GTGTGATTGAATCATTACACACGGTA 59.908 38.462 21.64 2.29 44.76 4.02
299 300 5.000591 TGTGATTGAATCATTACACACGGT 58.999 37.500 11.46 0.00 42.04 4.83
300 301 5.323900 GTGTGATTGAATCATTACACACGG 58.676 41.667 21.64 0.00 44.76 4.94
310 311 9.485206 CAGATCTATATGTGTGTGATTGAATCA 57.515 33.333 3.29 3.29 36.84 2.57
311 312 9.486497 ACAGATCTATATGTGTGTGATTGAATC 57.514 33.333 0.00 0.00 38.14 2.52
312 313 9.486497 GACAGATCTATATGTGTGTGATTGAAT 57.514 33.333 0.00 0.00 39.56 2.57
313 314 8.699130 AGACAGATCTATATGTGTGTGATTGAA 58.301 33.333 0.00 0.00 39.56 2.69
314 315 8.242729 AGACAGATCTATATGTGTGTGATTGA 57.757 34.615 0.00 0.00 39.56 2.57
315 316 8.883954 AAGACAGATCTATATGTGTGTGATTG 57.116 34.615 0.00 0.00 39.56 2.67
316 317 8.699130 TGAAGACAGATCTATATGTGTGTGATT 58.301 33.333 0.00 0.00 39.56 2.57
317 318 8.242729 TGAAGACAGATCTATATGTGTGTGAT 57.757 34.615 0.00 0.00 39.56 3.06
318 319 7.645058 TGAAGACAGATCTATATGTGTGTGA 57.355 36.000 0.00 0.00 39.56 3.58
319 320 9.623350 CTATGAAGACAGATCTATATGTGTGTG 57.377 37.037 0.00 0.00 39.56 3.82
320 321 8.303156 GCTATGAAGACAGATCTATATGTGTGT 58.697 37.037 0.00 0.00 39.56 3.72
321 322 7.758980 GGCTATGAAGACAGATCTATATGTGTG 59.241 40.741 0.00 0.00 39.56 3.82
322 323 7.093552 GGGCTATGAAGACAGATCTATATGTGT 60.094 40.741 0.00 0.00 41.99 3.72
323 324 7.264221 GGGCTATGAAGACAGATCTATATGTG 58.736 42.308 0.00 0.00 31.49 3.21
324 325 6.382570 GGGGCTATGAAGACAGATCTATATGT 59.617 42.308 0.00 0.00 34.49 2.29
325 326 6.382282 TGGGGCTATGAAGACAGATCTATATG 59.618 42.308 0.00 0.00 33.57 1.78
326 327 6.506661 TGGGGCTATGAAGACAGATCTATAT 58.493 40.000 0.00 0.00 33.57 0.86
327 328 5.903923 TGGGGCTATGAAGACAGATCTATA 58.096 41.667 0.00 0.00 33.57 1.31
328 329 4.756564 TGGGGCTATGAAGACAGATCTAT 58.243 43.478 0.00 0.00 33.57 1.98
329 330 4.199002 TGGGGCTATGAAGACAGATCTA 57.801 45.455 0.00 0.00 33.57 1.98
330 331 3.051940 TGGGGCTATGAAGACAGATCT 57.948 47.619 0.00 0.00 36.42 2.75
331 332 3.307339 GGATGGGGCTATGAAGACAGATC 60.307 52.174 0.00 0.00 29.10 2.75
332 333 2.641815 GGATGGGGCTATGAAGACAGAT 59.358 50.000 0.00 0.00 29.10 2.90
333 334 2.050144 GGATGGGGCTATGAAGACAGA 58.950 52.381 0.00 0.00 29.10 3.41
334 335 2.053244 AGGATGGGGCTATGAAGACAG 58.947 52.381 0.00 0.00 29.10 3.51
335 336 2.196742 AGGATGGGGCTATGAAGACA 57.803 50.000 0.00 0.00 29.10 3.41
336 337 3.648545 ACTAAGGATGGGGCTATGAAGAC 59.351 47.826 0.00 0.00 0.00 3.01
337 338 3.904339 GACTAAGGATGGGGCTATGAAGA 59.096 47.826 0.00 0.00 0.00 2.87
338 339 3.008485 GGACTAAGGATGGGGCTATGAAG 59.992 52.174 0.00 0.00 0.00 3.02
339 340 2.979678 GGACTAAGGATGGGGCTATGAA 59.020 50.000 0.00 0.00 0.00 2.57
340 341 2.182312 AGGACTAAGGATGGGGCTATGA 59.818 50.000 0.00 0.00 0.00 2.15
341 342 2.304180 CAGGACTAAGGATGGGGCTATG 59.696 54.545 0.00 0.00 0.00 2.23
342 343 2.625639 CAGGACTAAGGATGGGGCTAT 58.374 52.381 0.00 0.00 0.00 2.97
343 344 2.040144 GCAGGACTAAGGATGGGGCTA 61.040 57.143 0.00 0.00 0.00 3.93
344 345 1.348775 GCAGGACTAAGGATGGGGCT 61.349 60.000 0.00 0.00 0.00 5.19
345 346 1.149401 GCAGGACTAAGGATGGGGC 59.851 63.158 0.00 0.00 0.00 5.80
346 347 0.988145 TGGCAGGACTAAGGATGGGG 60.988 60.000 0.00 0.00 0.00 4.96
347 348 1.072965 GATGGCAGGACTAAGGATGGG 59.927 57.143 0.00 0.00 0.00 4.00
348 349 2.038295 GAGATGGCAGGACTAAGGATGG 59.962 54.545 0.00 0.00 0.00 3.51
349 350 2.702478 TGAGATGGCAGGACTAAGGATG 59.298 50.000 0.00 0.00 0.00 3.51
350 351 2.971330 CTGAGATGGCAGGACTAAGGAT 59.029 50.000 0.00 0.00 32.26 3.24
351 352 2.392662 CTGAGATGGCAGGACTAAGGA 58.607 52.381 0.00 0.00 32.26 3.36
352 353 2.906691 CTGAGATGGCAGGACTAAGG 57.093 55.000 0.00 0.00 32.26 2.69
396 397 1.828224 CTGGATTTTAGGGCCGGGC 60.828 63.158 22.00 22.00 0.00 6.13
397 398 1.152756 CCTGGATTTTAGGGCCGGG 60.153 63.158 2.18 0.00 41.55 5.73
398 399 4.579127 CCTGGATTTTAGGGCCGG 57.421 61.111 0.00 0.00 0.00 6.13
403 404 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
404 405 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
448 449 0.600057 CTCAAAACTCAGGCCCAAGC 59.400 55.000 0.00 0.00 38.76 4.01
449 450 0.600057 GCTCAAAACTCAGGCCCAAG 59.400 55.000 0.00 0.00 0.00 3.61
450 451 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
451 452 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
452 453 3.686760 GGCTCAAAACTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
454 455 0.813821 GATGGGCTCAAAACTCAGGC 59.186 55.000 0.00 0.00 34.44 4.85
455 456 2.089980 CTGATGGGCTCAAAACTCAGG 58.910 52.381 6.98 0.00 32.14 3.86
456 457 1.471684 GCTGATGGGCTCAAAACTCAG 59.528 52.381 10.08 10.08 32.14 3.35
457 458 1.202915 TGCTGATGGGCTCAAAACTCA 60.203 47.619 0.00 0.00 32.14 3.41
458 459 1.471684 CTGCTGATGGGCTCAAAACTC 59.528 52.381 0.00 0.00 32.14 3.01
459 460 1.542492 CTGCTGATGGGCTCAAAACT 58.458 50.000 0.00 0.00 32.14 2.66
460 461 0.529378 CCTGCTGATGGGCTCAAAAC 59.471 55.000 0.00 0.00 32.14 2.43
461 462 0.612732 CCCTGCTGATGGGCTCAAAA 60.613 55.000 0.00 0.00 37.99 2.44
462 463 1.000521 CCCTGCTGATGGGCTCAAA 60.001 57.895 0.00 0.00 37.99 2.69
463 464 2.679092 CCCTGCTGATGGGCTCAA 59.321 61.111 0.00 0.00 37.99 3.02
469 470 3.414193 TCCAGGCCCTGCTGATGG 61.414 66.667 4.81 0.00 0.00 3.51
470 471 2.124403 GTCCAGGCCCTGCTGATG 60.124 66.667 4.81 0.00 0.00 3.07
471 472 3.790437 CGTCCAGGCCCTGCTGAT 61.790 66.667 4.81 0.00 0.00 2.90
482 483 4.351054 AAGCCCAAGCCCGTCCAG 62.351 66.667 0.00 0.00 41.25 3.86
483 484 4.659172 CAAGCCCAAGCCCGTCCA 62.659 66.667 0.00 0.00 41.25 4.02
488 489 1.050421 AATATGCCAAGCCCAAGCCC 61.050 55.000 0.00 0.00 41.25 5.19
489 490 0.105408 CAATATGCCAAGCCCAAGCC 59.895 55.000 0.00 0.00 41.25 4.35
490 491 0.105408 CCAATATGCCAAGCCCAAGC 59.895 55.000 0.00 0.00 40.32 4.01
491 492 0.105408 GCCAATATGCCAAGCCCAAG 59.895 55.000 0.00 0.00 0.00 3.61
492 493 0.616964 TGCCAATATGCCAAGCCCAA 60.617 50.000 0.00 0.00 0.00 4.12
493 494 0.398806 ATGCCAATATGCCAAGCCCA 60.399 50.000 0.00 0.00 0.00 5.36
494 495 0.760572 AATGCCAATATGCCAAGCCC 59.239 50.000 0.00 0.00 0.00 5.19
495 496 2.625695 AAATGCCAATATGCCAAGCC 57.374 45.000 0.00 0.00 0.00 4.35
496 497 4.512571 CCTTAAAATGCCAATATGCCAAGC 59.487 41.667 0.00 0.00 0.00 4.01
497 498 5.916318 TCCTTAAAATGCCAATATGCCAAG 58.084 37.500 0.00 0.00 0.00 3.61
498 499 5.946942 TCCTTAAAATGCCAATATGCCAA 57.053 34.783 0.00 0.00 0.00 4.52
499 500 5.660417 TCTTCCTTAAAATGCCAATATGCCA 59.340 36.000 0.00 0.00 0.00 4.92
500 501 6.160576 TCTTCCTTAAAATGCCAATATGCC 57.839 37.500 0.00 0.00 0.00 4.40
501 502 6.040842 TCCTCTTCCTTAAAATGCCAATATGC 59.959 38.462 0.00 0.00 0.00 3.14
502 503 7.428826 GTCCTCTTCCTTAAAATGCCAATATG 58.571 38.462 0.00 0.00 0.00 1.78
503 504 6.551227 GGTCCTCTTCCTTAAAATGCCAATAT 59.449 38.462 0.00 0.00 0.00 1.28
504 505 5.891551 GGTCCTCTTCCTTAAAATGCCAATA 59.108 40.000 0.00 0.00 0.00 1.90
505 506 4.711846 GGTCCTCTTCCTTAAAATGCCAAT 59.288 41.667 0.00 0.00 0.00 3.16
506 507 4.086457 GGTCCTCTTCCTTAAAATGCCAA 58.914 43.478 0.00 0.00 0.00 4.52
507 508 3.697166 GGTCCTCTTCCTTAAAATGCCA 58.303 45.455 0.00 0.00 0.00 4.92
508 509 2.683362 CGGTCCTCTTCCTTAAAATGCC 59.317 50.000 0.00 0.00 0.00 4.40
509 510 2.683362 CCGGTCCTCTTCCTTAAAATGC 59.317 50.000 0.00 0.00 0.00 3.56
510 511 2.683362 GCCGGTCCTCTTCCTTAAAATG 59.317 50.000 1.90 0.00 0.00 2.32
511 512 2.356844 GGCCGGTCCTCTTCCTTAAAAT 60.357 50.000 1.90 0.00 0.00 1.82
512 513 1.003928 GGCCGGTCCTCTTCCTTAAAA 59.996 52.381 1.90 0.00 0.00 1.52
513 514 0.616891 GGCCGGTCCTCTTCCTTAAA 59.383 55.000 1.90 0.00 0.00 1.52
514 515 1.269703 GGGCCGGTCCTCTTCCTTAA 61.270 60.000 20.78 0.00 34.39 1.85
515 516 1.688187 GGGCCGGTCCTCTTCCTTA 60.688 63.158 20.78 0.00 34.39 2.69
516 517 3.009714 GGGCCGGTCCTCTTCCTT 61.010 66.667 20.78 0.00 34.39 3.36
517 518 4.332543 TGGGCCGGTCCTCTTCCT 62.333 66.667 28.64 0.00 34.39 3.36
518 519 4.097361 GTGGGCCGGTCCTCTTCC 62.097 72.222 28.64 4.84 34.39 3.46
519 520 4.452733 CGTGGGCCGGTCCTCTTC 62.453 72.222 28.64 12.93 34.39 2.87
546 547 2.604912 AACCCTGAAAAGCCCTTAGG 57.395 50.000 0.00 0.00 0.00 2.69
547 548 4.955811 AAAAACCCTGAAAAGCCCTTAG 57.044 40.909 0.00 0.00 0.00 2.18
565 566 0.323908 CCCGGCCCATCTGGTAAAAA 60.324 55.000 0.00 0.00 39.73 1.94
566 567 1.304952 CCCGGCCCATCTGGTAAAA 59.695 57.895 0.00 0.00 39.73 1.52
567 568 3.003230 CCCGGCCCATCTGGTAAA 58.997 61.111 0.00 0.00 39.73 2.01
568 569 3.804329 GCCCGGCCCATCTGGTAA 61.804 66.667 0.00 0.00 39.73 2.85
569 570 4.815973 AGCCCGGCCCATCTGGTA 62.816 66.667 5.55 0.00 39.73 3.25
580 581 2.158561 CTTTTCAAGCCCAAGCCCGG 62.159 60.000 0.00 0.00 41.25 5.73
581 582 1.290009 CTTTTCAAGCCCAAGCCCG 59.710 57.895 0.00 0.00 41.25 6.13
582 583 1.546029 CTACTTTTCAAGCCCAAGCCC 59.454 52.381 0.00 0.00 41.25 5.19
583 584 1.546029 CCTACTTTTCAAGCCCAAGCC 59.454 52.381 0.00 0.00 41.25 4.35
584 585 1.067565 GCCTACTTTTCAAGCCCAAGC 60.068 52.381 0.00 0.00 40.32 4.01
585 586 1.546029 GGCCTACTTTTCAAGCCCAAG 59.454 52.381 0.00 0.00 37.66 3.61
586 587 1.627864 GGCCTACTTTTCAAGCCCAA 58.372 50.000 0.00 0.00 37.66 4.12
587 588 3.356814 GGCCTACTTTTCAAGCCCA 57.643 52.632 0.00 0.00 37.66 5.36
589 590 0.322187 TCGGGCCTACTTTTCAAGCC 60.322 55.000 0.84 0.00 43.09 4.35
590 591 1.401905 CATCGGGCCTACTTTTCAAGC 59.598 52.381 0.84 0.00 0.00 4.01
591 592 2.985896 TCATCGGGCCTACTTTTCAAG 58.014 47.619 0.84 0.00 0.00 3.02
592 593 3.426787 TTCATCGGGCCTACTTTTCAA 57.573 42.857 0.84 0.00 0.00 2.69
593 594 3.343617 CTTTCATCGGGCCTACTTTTCA 58.656 45.455 0.84 0.00 0.00 2.69
594 595 2.683362 CCTTTCATCGGGCCTACTTTTC 59.317 50.000 0.84 0.00 0.00 2.29
595 596 2.620627 CCCTTTCATCGGGCCTACTTTT 60.621 50.000 0.84 0.00 34.32 2.27
596 597 1.064685 CCCTTTCATCGGGCCTACTTT 60.065 52.381 0.84 0.00 34.32 2.66
597 598 0.546598 CCCTTTCATCGGGCCTACTT 59.453 55.000 0.84 0.00 34.32 2.24
598 599 2.221918 CCCTTTCATCGGGCCTACT 58.778 57.895 0.84 0.00 34.32 2.57
599 600 4.878878 CCCTTTCATCGGGCCTAC 57.121 61.111 0.84 0.00 34.32 3.18
604 605 2.124151 CCAGGCCCTTTCATCGGG 60.124 66.667 0.00 0.00 44.89 5.14
605 606 2.124151 CCCAGGCCCTTTCATCGG 60.124 66.667 0.00 0.00 0.00 4.18
606 607 2.830370 GCCCAGGCCCTTTCATCG 60.830 66.667 0.00 0.00 34.56 3.84
619 620 1.228552 GGCAGAAAACTGAGGCCCA 60.229 57.895 0.00 0.00 38.70 5.36
620 621 0.613012 ATGGCAGAAAACTGAGGCCC 60.613 55.000 0.00 0.00 43.96 5.80
621 622 0.529378 CATGGCAGAAAACTGAGGCC 59.471 55.000 0.00 0.00 44.82 5.19
622 623 0.529378 CCATGGCAGAAAACTGAGGC 59.471 55.000 0.00 0.00 0.00 4.70
623 624 1.180029 CCCATGGCAGAAAACTGAGG 58.820 55.000 6.09 0.00 0.00 3.86
645 646 0.896479 GCTTGGACCGGGCCTAAAAA 60.896 55.000 30.93 12.95 0.00 1.94
646 647 1.303806 GCTTGGACCGGGCCTAAAA 60.304 57.895 30.93 13.39 0.00 1.52
647 648 2.353573 GCTTGGACCGGGCCTAAA 59.646 61.111 30.93 14.26 0.00 1.85
648 649 3.723922 GGCTTGGACCGGGCCTAA 61.724 66.667 30.93 19.10 42.31 2.69
679 680 1.371467 TGGGTATATCTGGCCATGGG 58.629 55.000 15.13 0.00 0.00 4.00
680 681 2.092212 GGATGGGTATATCTGGCCATGG 60.092 54.545 5.51 7.63 0.00 3.66
681 682 2.848694 AGGATGGGTATATCTGGCCATG 59.151 50.000 5.51 0.00 0.00 3.66
682 683 2.848694 CAGGATGGGTATATCTGGCCAT 59.151 50.000 5.51 0.00 0.00 4.40
683 684 2.269023 CAGGATGGGTATATCTGGCCA 58.731 52.381 4.71 4.71 0.00 5.36
684 685 1.065126 GCAGGATGGGTATATCTGGCC 60.065 57.143 0.00 0.00 35.86 5.36
685 686 1.630369 TGCAGGATGGGTATATCTGGC 59.370 52.381 0.00 0.00 35.86 4.85
686 687 2.909006 ACTGCAGGATGGGTATATCTGG 59.091 50.000 19.93 0.00 35.86 3.86
687 688 3.580022 TCACTGCAGGATGGGTATATCTG 59.420 47.826 19.93 2.07 35.86 2.90
688 689 3.861846 TCACTGCAGGATGGGTATATCT 58.138 45.455 19.93 0.00 35.86 1.98
689 690 4.319177 GTTCACTGCAGGATGGGTATATC 58.681 47.826 19.93 0.00 35.86 1.63
690 691 3.244215 CGTTCACTGCAGGATGGGTATAT 60.244 47.826 19.93 0.00 35.86 0.86
691 692 2.102420 CGTTCACTGCAGGATGGGTATA 59.898 50.000 19.93 0.00 35.86 1.47
692 693 1.134401 CGTTCACTGCAGGATGGGTAT 60.134 52.381 19.93 0.00 35.86 2.73
693 694 0.249120 CGTTCACTGCAGGATGGGTA 59.751 55.000 19.93 0.00 35.86 3.69
694 695 1.003355 CGTTCACTGCAGGATGGGT 60.003 57.895 19.93 0.00 35.86 4.51
809 810 3.006859 CAGAGTTGACCACTGTATCACCA 59.993 47.826 0.00 0.00 35.01 4.17
857 858 2.327200 TCCTGCTCTGCTCATTGATG 57.673 50.000 0.00 0.00 0.00 3.07
862 863 1.481772 GAGACTTCCTGCTCTGCTCAT 59.518 52.381 0.00 0.00 0.00 2.90
874 875 5.068067 GTGTCCACTTATAGAGGAGACTTCC 59.932 48.000 11.42 0.00 42.91 3.46
907 909 2.928116 GTTTTAGGGTACGCACTAGCTG 59.072 50.000 12.95 0.00 39.10 4.24
921 923 3.690460 AGGCTGTGATCCAAGTTTTAGG 58.310 45.455 0.00 0.00 0.00 2.69
927 929 2.826488 AGAGTAGGCTGTGATCCAAGT 58.174 47.619 0.00 0.00 0.00 3.16
931 933 3.618690 AACAAGAGTAGGCTGTGATCC 57.381 47.619 0.00 0.00 0.00 3.36
943 945 6.124088 CAGTAGTGCTTTGAAAACAAGAGT 57.876 37.500 0.00 0.00 0.00 3.24
1004 1006 1.327303 CATCTCTCTTCCCCTCCTCG 58.673 60.000 0.00 0.00 0.00 4.63
1095 1097 2.154854 CTTGAAAGCTCTCACCGTCA 57.845 50.000 0.00 0.00 0.00 4.35
1124 1126 5.585500 TGCACTAGAAATGAAACACGTAC 57.415 39.130 0.00 0.00 0.00 3.67
1127 1129 4.406069 CCATGCACTAGAAATGAAACACG 58.594 43.478 0.00 0.00 0.00 4.49
1154 1156 5.406477 GCATGATTAATCAGCTCGTCATACA 59.594 40.000 21.97 0.00 40.64 2.29
1205 1207 0.549950 AGGAGGCCTGATGAACATGG 59.450 55.000 12.00 0.00 29.57 3.66
1306 1308 2.606587 GCACCCACAGGACTCCCAT 61.607 63.158 0.00 0.00 36.73 4.00
1313 1315 3.625897 CTCCACGCACCCACAGGA 61.626 66.667 0.00 0.00 36.73 3.86
1636 1644 2.228914 GGCGGCGTCTTCATCGTAC 61.229 63.158 9.37 0.00 0.00 3.67
1702 1720 4.435425 AGTACGTACAGTTGCTTTGTTGA 58.565 39.130 26.55 0.00 0.00 3.18
1773 1799 0.250234 TCTTGGGCGAATCCAGACAG 59.750 55.000 0.00 0.00 38.17 3.51
1777 1803 3.199880 AGTTATCTTGGGCGAATCCAG 57.800 47.619 0.00 0.00 38.17 3.86
1812 1838 2.439960 ATGTTATCTGGCGGCCGGA 61.440 57.895 31.31 31.31 43.71 5.14
2078 2104 2.479730 CCGAGAACTCCATCTTGTACGG 60.480 54.545 0.00 0.00 0.00 4.02
2417 2467 1.273438 TGGACCCCTCTGTAGTTACCC 60.273 57.143 0.00 0.00 0.00 3.69
2418 2468 2.242882 TGGACCCCTCTGTAGTTACC 57.757 55.000 0.00 0.00 0.00 2.85
2530 2599 0.180642 TAGTTGCCACCCAAACGTGA 59.819 50.000 0.00 0.00 35.68 4.35
2538 2607 0.326927 TACTTGCCTAGTTGCCACCC 59.673 55.000 0.00 0.00 38.33 4.61
2541 2610 3.408634 GAAGTTACTTGCCTAGTTGCCA 58.591 45.455 0.93 0.00 38.33 4.92
2544 2613 3.921677 TCCGAAGTTACTTGCCTAGTTG 58.078 45.455 0.93 0.00 38.33 3.16
2545 2614 4.612264 TTCCGAAGTTACTTGCCTAGTT 57.388 40.909 0.93 0.00 38.33 2.24
2547 2616 4.755411 TCATTCCGAAGTTACTTGCCTAG 58.245 43.478 0.93 0.00 0.00 3.02
2562 2786 4.082787 ACTTGCTGGTGTTTTATCATTCCG 60.083 41.667 0.00 0.00 0.00 4.30
2563 2787 5.391312 ACTTGCTGGTGTTTTATCATTCC 57.609 39.130 0.00 0.00 0.00 3.01
2590 2814 9.114952 GGGGTAATTCTCATTTTCAAAACAAAA 57.885 29.630 0.00 0.00 0.00 2.44
2591 2815 7.717436 GGGGGTAATTCTCATTTTCAAAACAAA 59.283 33.333 0.00 0.00 0.00 2.83
2592 2816 7.147479 TGGGGGTAATTCTCATTTTCAAAACAA 60.147 33.333 0.00 0.00 0.00 2.83
2593 2817 6.327626 TGGGGGTAATTCTCATTTTCAAAACA 59.672 34.615 0.00 0.00 0.00 2.83
2594 2818 6.764379 TGGGGGTAATTCTCATTTTCAAAAC 58.236 36.000 0.00 0.00 0.00 2.43
2595 2819 6.556874 ACTGGGGGTAATTCTCATTTTCAAAA 59.443 34.615 0.00 0.00 0.00 2.44
2596 2820 6.081356 ACTGGGGGTAATTCTCATTTTCAAA 58.919 36.000 0.00 0.00 0.00 2.69
2597 2821 5.650283 ACTGGGGGTAATTCTCATTTTCAA 58.350 37.500 0.00 0.00 0.00 2.69
2598 2822 5.269554 ACTGGGGGTAATTCTCATTTTCA 57.730 39.130 0.00 0.00 0.00 2.69
2599 2823 6.437477 AGAAACTGGGGGTAATTCTCATTTTC 59.563 38.462 0.00 0.00 31.55 2.29
2600 2824 6.211384 CAGAAACTGGGGGTAATTCTCATTTT 59.789 38.462 0.00 0.00 0.00 1.82
2601 2825 5.716703 CAGAAACTGGGGGTAATTCTCATTT 59.283 40.000 0.00 0.00 0.00 2.32
2602 2826 5.264395 CAGAAACTGGGGGTAATTCTCATT 58.736 41.667 0.00 0.00 0.00 2.57
2603 2827 4.860022 CAGAAACTGGGGGTAATTCTCAT 58.140 43.478 0.00 0.00 0.00 2.90
2604 2828 3.561313 GCAGAAACTGGGGGTAATTCTCA 60.561 47.826 0.00 0.00 31.21 3.27
2605 2829 3.017442 GCAGAAACTGGGGGTAATTCTC 58.983 50.000 0.00 0.00 31.21 2.87
2606 2830 2.378547 TGCAGAAACTGGGGGTAATTCT 59.621 45.455 0.00 0.00 31.21 2.40
2607 2831 2.802719 TGCAGAAACTGGGGGTAATTC 58.197 47.619 0.00 0.00 31.21 2.17
2608 2832 2.990740 TGCAGAAACTGGGGGTAATT 57.009 45.000 0.00 0.00 31.21 1.40
2609 2833 2.990740 TTGCAGAAACTGGGGGTAAT 57.009 45.000 0.00 0.00 31.21 1.89
2610 2834 2.109128 TGATTGCAGAAACTGGGGGTAA 59.891 45.455 0.00 0.00 31.21 2.85
2611 2835 1.707989 TGATTGCAGAAACTGGGGGTA 59.292 47.619 0.00 0.00 31.21 3.69
2612 2836 0.482446 TGATTGCAGAAACTGGGGGT 59.518 50.000 0.00 0.00 31.21 4.95
2613 2837 1.180029 CTGATTGCAGAAACTGGGGG 58.820 55.000 0.00 0.00 45.17 5.40
2614 2838 0.529378 GCTGATTGCAGAAACTGGGG 59.471 55.000 0.00 0.00 45.17 4.96
2624 2848 5.636082 GTGTCTTGCACTTGCTGATTGCA 62.636 47.826 2.33 2.48 46.10 4.08
2625 2849 1.001048 TGTCTTGCACTTGCTGATTGC 60.001 47.619 2.33 0.00 42.66 3.56
2626 2850 2.658285 GTGTCTTGCACTTGCTGATTG 58.342 47.619 2.33 0.00 44.41 2.67
2633 2857 7.669244 TGACAGAACTATGTGTCTTGCACTTG 61.669 42.308 7.49 0.00 46.94 3.16
2645 2869 2.418746 GCCACGGATGACAGAACTATGT 60.419 50.000 0.00 0.00 35.68 2.29
2653 2877 1.742761 AAATCTGCCACGGATGACAG 58.257 50.000 0.00 0.00 28.96 3.51
2654 2878 2.027653 TGTAAATCTGCCACGGATGACA 60.028 45.455 0.00 0.00 28.96 3.58
2655 2879 2.351726 GTGTAAATCTGCCACGGATGAC 59.648 50.000 0.00 0.00 28.96 3.06
2656 2880 2.627945 GTGTAAATCTGCCACGGATGA 58.372 47.619 0.00 0.00 28.96 2.92
2657 2881 1.327460 CGTGTAAATCTGCCACGGATG 59.673 52.381 3.66 0.00 45.97 3.51
2658 2882 1.651987 CGTGTAAATCTGCCACGGAT 58.348 50.000 3.66 0.00 45.97 4.18
2659 2883 3.131326 CGTGTAAATCTGCCACGGA 57.869 52.632 3.66 0.00 45.97 4.69
2759 2984 1.339929 TGTCAACTCGCTCTGCTGTAA 59.660 47.619 0.00 0.00 0.00 2.41
2804 3062 2.961424 CCGTTGGGAGGCAATTTCT 58.039 52.632 0.00 0.00 34.06 2.52
2816 3074 3.225069 CTTTTGGGGCTGCCGTTGG 62.225 63.158 13.40 0.00 0.00 3.77
2817 3075 2.339712 CTTTTGGGGCTGCCGTTG 59.660 61.111 13.40 0.00 0.00 4.10
2818 3076 3.615709 GCTTTTGGGGCTGCCGTT 61.616 61.111 13.40 0.00 0.00 4.44
2819 3077 4.912395 TGCTTTTGGGGCTGCCGT 62.912 61.111 13.40 0.00 0.00 5.68
2820 3078 4.060038 CTGCTTTTGGGGCTGCCG 62.060 66.667 13.40 0.00 0.00 5.69
2821 3079 2.601367 TCTGCTTTTGGGGCTGCC 60.601 61.111 11.05 11.05 0.00 4.85
2823 3081 0.964358 CTCCTCTGCTTTTGGGGCTG 60.964 60.000 0.00 0.00 0.00 4.85
2824 3082 1.136329 TCTCCTCTGCTTTTGGGGCT 61.136 55.000 0.00 0.00 0.00 5.19
2827 3085 2.867109 TTCTCTCCTCTGCTTTTGGG 57.133 50.000 0.00 0.00 0.00 4.12
2828 3086 4.082354 CCATTTTCTCTCCTCTGCTTTTGG 60.082 45.833 0.00 0.00 0.00 3.28
2829 3087 4.617762 GCCATTTTCTCTCCTCTGCTTTTG 60.618 45.833 0.00 0.00 0.00 2.44
2830 3088 3.509184 GCCATTTTCTCTCCTCTGCTTTT 59.491 43.478 0.00 0.00 0.00 2.27
2831 3089 3.087781 GCCATTTTCTCTCCTCTGCTTT 58.912 45.455 0.00 0.00 0.00 3.51
2832 3090 2.308275 AGCCATTTTCTCTCCTCTGCTT 59.692 45.455 0.00 0.00 0.00 3.91
2833 3091 1.914798 AGCCATTTTCTCTCCTCTGCT 59.085 47.619 0.00 0.00 0.00 4.24
2834 3092 2.093021 AGAGCCATTTTCTCTCCTCTGC 60.093 50.000 0.00 0.00 36.21 4.26
2835 3093 3.795877 GAGAGCCATTTTCTCTCCTCTG 58.204 50.000 8.42 0.00 46.68 3.35
2842 3100 2.428890 TCGAGAGGAGAGCCATTTTCTC 59.571 50.000 0.00 0.00 40.25 2.87
2844 3102 2.820330 CTCGAGAGGAGAGCCATTTTC 58.180 52.381 6.58 0.00 46.23 2.29
2845 3103 2.977772 CTCGAGAGGAGAGCCATTTT 57.022 50.000 6.58 0.00 46.23 1.82
2882 3140 4.552365 CGATGGGCAGCGGGATGT 62.552 66.667 0.00 0.00 36.46 3.06
2987 6732 4.292178 CGCCTCCTCCTCCATCGC 62.292 72.222 0.00 0.00 0.00 4.58
3013 6758 1.520342 GGAGCAGCGACATGGTCTC 60.520 63.158 12.54 0.00 45.03 3.36
3131 6974 2.325484 TGTAGTCTTCAGGGAAGCACA 58.675 47.619 1.14 3.31 39.29 4.57
3253 7096 3.987954 ATACCTTGTTGCCGCCCGG 62.988 63.158 1.59 1.59 38.57 5.73
3310 7153 0.259647 TCCCAATCCCAGGCATTCAG 59.740 55.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.